Citrus Sinensis ID: 047325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH
Secondary Structure (PSIPRED)
cccccccEEEccccccEEcccccccccccccccccEEEEEEcccccEEEEEEEccEEEEEcccccEEEEEccccEEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccEEEEEEEEEcccccEEEEEEccccccEEEEEccccEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccccccEEccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEcccccccccEEEEEccccEEEEccccccEEEEcccccEEEEEEEcccccccEEEEEEcccccccccccccEEEEEcccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEccccEEEEEEEEcccccEEEEEccccccEEEEEEcccccEEcccccEEEEEEcccccEEEcccccc
Coil and Loop (DISEMBL)
mscegspmtmspwnqtgpfsnpgwsqfeenlpqngligslvreeghIYSLAASKdllytgsdskniRVWKNLKEFCGFKASSGLVKAIVISGekiftghqdgkirvwkispknqsvhkragtlptlkdifkssikpsnyiEVRRHRTALWIRHsdavscmsldqdcgllytASWDRTFKVWRISDSKCLESVSAHDDAVnsvvsssegliftgsadgtVKVWkreqhgkgtkHSLAQTLLKQECAVTALVVSSSRSivycgssdglvNFWEREKqlshggvlkghKLAVLCLAAAGklvfsgsadkticvwrrdgaihtclsvltghtgpvkclaveedrdsssstsscaqRWIVYsgsldksdddvh
Flexible Loop (DISEMBL)
mscegspmtmspwnqTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAAskdllytgsDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEkiftghqdgkirvwkispknqsvhkragtlptlkdifkssikpsnyieVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVvsssegliftgsadgtvKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEedrdsssstsscaqrwivysgsldksdddvh
Low Complexity Region (SEG)
MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDsssstssCAQRWIVYSGSLDKSDDDVH
Disordered region (IsUnstruct)
********************************QNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV********************************
Disordered Region (DISOPRED)
MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS*****
Disordered Region (DISEMBL)
**********SPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKR**********LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV*************AQRWIVYSGSL********
Disordered Region (DISPRO)
****GSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
P90648	732	Myosin heavy chain kinase	yes	no	0.665	0.334	0.274	3e-17
Q86TI4	376	WD repeat-containing prot	yes	no	0.695	0.680	0.265	1e-16
Q61FW2	589	F-box/WD repeat-containin	N/A	no	0.497	0.310	0.334	3e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.649	0.156	0.259	2e-15
Q00808	1356	Vegetative incompatibilit	no	no	0.793	0.215	0.267	5e-15
Q5SRY7	542	F-box/WD repeat-containin	no	no	0.480	0.326	0.303	2e-13
Q9UKB1	542	F-box/WD repeat-containin	no	no	0.480	0.326	0.303	3e-13
Q09990	665	F-box/WD repeat-containin	yes	no	0.510	0.282	0.285	4e-13
Q9FE91	419	Zinc finger CCCH domain-c	no	no	0.532	0.467	0.267	5e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.451	0.098	0.311	5e-13

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 128/295 (43%), Gaps = 50/295 (16%)

Query: 50  LAASKDLLYTGSDSKNIRVW----KNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIR 105
           L    +LL+TG    +IRV+    +N++     K   G V++I  + + +F+G  D  I+
Sbjct: 466 LCICDNLLFTGCSDNSIRVYDYKSQNMECVQTLKGHEGPVESICYNDQYLFSGSSDHSIK 525

Query: 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165
           VW +        K+   + TL+                         H   V  + L+  
Sbjct: 526 VWDL--------KKLRCIFTLEG------------------------HDKPVHTVLLNDK 553

Query: 166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKRE 225
              L++ S D+T KVW +   +C  ++ +H  AV ++  S + L F+GS D T+KVW  +
Sbjct: 554 --YLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYL-FSGSNDKTIKVWDLK 610

Query: 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH 285
                       TL      VT + +  +   +Y GS D  +  W   K L     L+GH
Sbjct: 611 TF------RCNYTLKGHTKWVTTICILGTN--LYSGSYDKTIRVWNL-KSLECSATLRGH 661

Query: 286 KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
              V  +    KL+F+ S D TI +W  D     C + L GH   V+CLAV ED+
Sbjct: 662 DRWVEHMVICDKLLFTASDDNTIKIW--DLETLRCNTTLEGHNATVQCLAVWEDK 714

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7

>sp|Q86TI4|WDR86_HUMAN WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 131/298 (43%), Gaps = 42/298 (14%)

Query: 92  GEKIFTGHQDGKIRVWKISPKNQSV----HKRAGTLPTLKDIFKSSIKPSNYIEVRR--- 144
           G+++ TG +DG  R+W  +          H+   T   L+D  +++   S    +RR   
Sbjct: 27  GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED--EAAFTCSADCTIRRWDV 84

Query: 145 ---HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS 201
                  ++  H+  V+ + +  +   L+++S+DRT +VW +   +       H + V +
Sbjct: 85  LTGQCLQVYRGHTSIVNRILVANN--QLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLT 142

Query: 202 VVSSSE---------------GLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246
           +  S+                GL+ TGS DGT KVW   Q   G  H   QTL     AV
Sbjct: 143 LAYSAPWDLPSTPCAEEAAAGGLLVTGSTDGTAKVW---QVASGCCH---QTLRGHTGAV 196

Query: 247 TALVVSSSRSIVYCGSSDGLVNFWE--REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304
             LV+ +     + GS+D  +  W+    +QL    V + H+ +V+CL    +LV+SGSA
Sbjct: 197 LCLVLDTPGHTAFTGSTDATIRAWDILSGEQLR---VFREHRGSVICLELVNRLVYSGSA 253

Query: 305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK 362
           D+T+  W  D     C+   T H   V  L        + S  +CA+ +   SG L +
Sbjct: 254 DRTVKCWLADTG--ECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRR 309

Homo sapiens (taxid: 9606)

>sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGS 214
            ++CM +  D  LL T S D T KVW I D +   +++ H   V  S +S     I +GS
Sbjct: 260 VITCMQIHND--LLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGS 317

Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274
            D TVKVW+ E         L  TL      V  + +++  + +  GS D  +  W+ E 
Sbjct: 318 TDRTVKVWRAED------GFLLHTLQGHTSTVRCMAMAN--TTLVTGSRDCTLRVWDIET 369

Query: 275 QLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL 334
            L H   L+GH+ AV C+   G +V SG  D T+ +W  D     CL  L GH+  V  L
Sbjct: 370 GL-HVRTLQGHQAAVRCVQFDGNIVVSGGYDFTVKIW--DAFSGKCLRTLIGHSNRVYSL 426

Query: 335 AVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363
             E +R             IV SGSLD S
Sbjct: 427 LYESERS------------IVCSGSLDTS 443

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 54/293 (18%)

Query: 57   LYTGSDSKNIRVWK--NLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPK 112
            L +GS  + +R+W+  + K  C F+  +  V ++V +  G  + +G  D  +R+W IS  
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDIS-S 1273

Query: 113  NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172
            ++ +H   G                               H++ V+ ++ + D  +L + 
Sbjct: 1274 SKCLHTFQG-------------------------------HTNWVNSVAFNPDGSMLASG 1302

Query: 173  SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231
            S D+T ++W IS SKCL +   H   V+SV  S +G ++ +GS D TV++W        +
Sbjct: 1303 SGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSI------S 1356

Query: 232  KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---VLKGHK-- 286
                  T L     V +++ S   +I+  GS D  V  W     +S G     L+GH   
Sbjct: 1357 SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLW----SISSGKCLYTLQGHNNW 1412

Query: 287  LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
            +  +  +  G L+ SGS D+T+ +W        CL  L GH   V+ +A   D
Sbjct: 1413 VGSIVFSPDGTLLASGSDDQTVRLWNISSG--ECLYTLHGHINSVRSVAFSSD 1463

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 63/355 (17%)

Query: 44   EGH---IYSLAASKDL--LYTGSDSKNIRVWKNLKEFCG--FKASSGLVKAIVIS--GEK 94
            EGH   ++S+A S D   + +GSD K I++W      C    +   G V+++  S  G++
Sbjct: 880  EGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQR 939

Query: 95   IFTGHQDGKIRVWK---------------------ISPKNQSVHKRAGTLPTLKDIFKSS 133
            + +G  D  I++W                       SP  Q V   +G   T+K    +S
Sbjct: 940  VASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGD-KTIKIWDTAS 998

Query: 134  IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS 193
               +  +E           H  +V  ++   D   + + S D+T K+W  +   C +++ 
Sbjct: 999  GTCTQTLE----------GHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE 1048

Query: 194  AHDDAVNSVVSSSEGL-IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS 252
             H   V SVV S +G  + +GS D T+K+W           +  QTL     +V ++  S
Sbjct: 1049 GHGGWVQSVVFSPDGQRVASGSDDHTIKIWD------AVSGTCTQTLEGHGDSVWSVAFS 1102

Query: 253  SSRSIVYCGSSDGLVNFWE------REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK 306
                 V  GS DG +  W+       +    HGG +  H +A    +  G+ V SGS D 
Sbjct: 1103 PDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWV--HSVA---FSPDGQRVASGSIDG 1157

Query: 307  TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED--RDSSSSTSSCAQRWIVYSGS 359
            TI +W  D A  TC   L GH G V+ +A   D  R +S S+    + W   SG+
Sbjct: 1158 TIKIW--DAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGT 1210

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q5SRY7|FBW1B_MOUSE F-box/WD repeat-containing protein 11 OS=Mus musculus GN=Fbxw11 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
           H+ +V C+  D+   ++ T S D T +VW ++  + L ++  H++AV  +   S GL+ T
Sbjct: 279 HTGSVLCLQYDE--RVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHL-RFSNGLMVT 335

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
            S D ++ VW        T  +L + L+    AV   VV      +   S D  +  W  
Sbjct: 336 CSKDRSIAVW---DMASATDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWS- 389

Query: 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332
                    L GHK  + CL    +LV SGS+D TI +W  D     CL VL GH   V+
Sbjct: 390 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVR 447

Query: 333 CLAVEEDR 340
           C+  +  R
Sbjct: 448 CIRFDNKR 455

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. Mediates also the ubiquitination of IFNAR1 and targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced ubiquitin-mediated decrease of RCAN1. Promotes the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint (By similarity). Involved in the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2.

Mus musculus (taxid: 10090)

>sp|Q9UKB1|FBW1B_HUMAN F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
           H+ +V C+  D+   ++ T S D T +VW ++  + L ++  H++AV  +   S GL+ T
Sbjct: 279 HTGSVLCLQYDE--RVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHL-RFSNGLMVT 335

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
            S D ++ VW        T  +L + L+    AV   VV      +   S D  +  W  
Sbjct: 336 CSKDRSIAVW---DMASATDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWS- 389

Query: 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332
                    L GHK  + CL    +LV SGS+D TI +W  D     CL VL GH   V+
Sbjct: 390 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVR 447

Query: 333 CLAVEEDR 340
           C+  +  R
Sbjct: 448 CIRFDNKR 455

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(FBXW11) mediates the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. SCF(FBXW11) mediates the ubiquitination of IFNAR1. Targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced a ubiquitin-mediated decrease in RCAN1. Mediates the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Is target of human immunodeficiency virus type 1 (HIV-1) protein VPU to polyubiquitinate and deplete BST2 from cells and antagonize its antiviral action.

Homo sapiens (taxid: 9606)

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 15/203 (7%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
           H+ +V C+  D    ++ + S D T +VW +   +C++++  H +AV  +   + G++ T
Sbjct: 261 HTGSVLCLQYDN--RVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHL-RFANGIMVT 317

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
            S D ++ VW        T   + + L+    AV   VV      +   S D  +  W  
Sbjct: 318 CSKDRSIAVWDMVSPRDIT---IRRVLVGHRAAVN--VVDFDDRYIVSASGDRTIKVWSM 372

Query: 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT--CLSVLTGHTGP 330
           +  L     L GH+  + CL   G+LV SGS+D TI +W     IH+  CL VL GH   
Sbjct: 373 DT-LEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLW----DIHSGVCLRVLEGHEEL 427

Query: 331 VKCLAVEEDRDSSSSTSSCAQRW 353
           V+C+  +E R  S +     + W
Sbjct: 428 VRCIRFDEKRIVSGAYDGKIKVW 450

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 36/232 (15%)

Query: 83  GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV 142
           G V A+ I+   +F G   G I VWK +  ++S            D FK           
Sbjct: 213 GQVNAMTIANGMLFAGTSSGSILVWKATTDSES------------DPFK----------- 249

Query: 143 RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV 202
             + T+L   HS  V+C ++     +LY+ S D+T K+W ++  +C+ ++  H   V S+
Sbjct: 250 --YLTSL-EGHSGEVTCFAVGGQ--MLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSL 304

Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV---SSSRSIVY 259
           +   + LI + S DGT+KVW   ++G      + QT  +++ +V AL     + ++ I++
Sbjct: 305 LCWDKCLI-SSSLDGTIKVWAYSENG---ILKVVQTRRQEQSSVHALSGMHDAEAKPIIF 360

Query: 260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVW 311
           C   +G V  ++       G +   H +A L +   G L+FSG     + VW
Sbjct: 361 CSYQNGTVGIFDLPSFQERGRMFSTHTIATLTIGPQG-LLFSGDESGNLRVW 411

Arabidopsis thaliana (taxid: 3702)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 153  HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL-IF 211
            H DAV  +S   D   + +   D+T K+W+ SD   L++++ H+  VN+V  S +G  + 
Sbjct: 1112 HEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLA 1171

Query: 212  TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
            + S+D ++K+W        T   L  TL      V  +  S     +  GS D  V  W 
Sbjct: 1172 SASSDHSIKLWDT------TSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWH 1225

Query: 272  REKQLSHGGVLK---GHK--LAVLCLAAAGKLVFSGSADKTICVWR-RDGAIHTCLSVLT 325
            R+     G +LK   GH+  +  L  +  GK + S SADKTI +WR  DG +   +  L 
Sbjct: 1226 RQD----GKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKL---VKTLK 1278

Query: 326  GHTGPV 331
            GH   V
Sbjct: 1279 GHNDSV 1284

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
255538504	470	F-box and wd40 domain protein, putative	0.978	0.765	0.834	0.0
15225317	465	WD40 domain-containing protein [Arabidop	0.978	0.774	0.790	1e-171
225458438	456	PREDICTED: vegetative incompatibility pr	0.975	0.787	0.823	1e-171
147815410	456	hypothetical protein VITISV_003189 [Viti	0.975	0.787	0.820	1e-170
224136642	448	predicted protein [Populus trichocarpa]	0.972	0.799	0.801	1e-169
224067294	413	predicted protein [Populus trichocarpa]	0.972	0.866	0.801	1e-168
357438041	470	Guanine nucleotide-binding protein G(I)/	0.978	0.765	0.772	1e-167
356562315	466	PREDICTED: uncharacterized WD repeat-con	0.983	0.776	0.754	1e-161
449460171	462	PREDICTED: vegetative incompatibility pr	0.978	0.779	0.777	1e-161
225428610	445	PREDICTED: vegetative incompatibility pr	0.972	0.804	0.723	1e-154

>gi|255538504|ref|XP_002510317.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223551018|gb|EEF52504.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/363 (83%), Positives = 335/363 (92%), Gaps = 3/363 (0%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           +SCEGSPMTMSPWN T PF+   W+ FEEN+PQNGLIGSLVREEGHIYSLAA KDLLYTG
Sbjct: 64  LSCEGSPMTMSPWNNTSPFTKSPWANFEENIPQNGLIGSLVREEGHIYSLAAKKDLLYTG 123

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF GFK+SSGLVKAI+ISGEKIFTGHQDGKIRVWK+SPKN SVHKR+
Sbjct: 124 SDSKNIRVWKNLKEFSGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVSPKNLSVHKRS 183

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLKDIFKSSIKPSNY++VR HR+ALWI+HSDAVSC+S ++D  LLY+ASWDRTFKV
Sbjct: 184 GTLPTLKDIFKSSIKPSNYVQVRNHRSALWIKHSDAVSCLSFNEDQTLLYSASWDRTFKV 243

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRISDSKCLES+SAHDDAVNSVV+++EG++FTGSADGTVKVWKREQ GK TKH++ QTLL
Sbjct: 244 WRISDSKCLESISAHDDAVNSVVATTEGMVFTGSADGTVKVWKREQPGKTTKHNMVQTLL 303

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQECAVTAL V++S S++YCGSSDG+VN+WEREKQLSHGGVLKGHKLAVLCLAAAG LVF
Sbjct: 304 KQECAVTALAVNTSGSVLYCGSSDGVVNYWEREKQLSHGGVLKGHKLAVLCLAAAGNLVF 363

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVWRRDG IHTCLSVLTGHTGPVKCLAVEEDR+ S       QRW+VYSGSL
Sbjct: 364 SGSADKTICVWRRDGNIHTCLSVLTGHTGPVKCLAVEEDREQSKPGD---QRWVVYSGSL 420

Query: 361 DKS 363
           DKS
Sbjct: 421 DKS 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225317|ref|NP_180217.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|2739374|gb|AAC14498.1| En/Spm-like transposon protein [Arabidopsis thaliana] gi|50253512|gb|AAT71958.1| At2g26490 [Arabidopsis thaliana] gi|53850519|gb|AAU95436.1| At2g26490 [Arabidopsis thaliana] gi|330252750|gb|AEC07844.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/363 (79%), Positives = 323/363 (88%), Gaps = 3/363 (0%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           MSCEGSPM MSPWNQ  PF+   WS  EENLPQNGLIGSLVREEGHIYSLAA+KDLLYTG
Sbjct: 53  MSCEGSPMMMSPWNQATPFTQTQWSTVEENLPQNGLIGSLVREEGHIYSLAATKDLLYTG 112

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF  FK +SGLVKAIVISGEKIFTGHQDGKIRVWK+SPKNQS+HKR+
Sbjct: 113 SDSKNIRVWKNLKEFSAFKCNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNQSLHKRS 172

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLKDIFK+S+KP NY+EV++HRTALWI+H+DAVSC+SL+ + GLLY+ASWDRT KV
Sbjct: 173 GTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKV 232

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRI+DSKCLES+ AHDDAVNSVVS++E ++F+GSADGTVK WKR+Q GK TKH+L QTL 
Sbjct: 233 WRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLT 292

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQE AVTAL VS + + VY GSSDGLVNFWEREKQL++GG+LKGHKLAVLCL  AG LVF
Sbjct: 293 KQESAVTALAVSKNGAAVYFGSSDGLVNFWEREKQLNYGGILKGHKLAVLCLEVAGSLVF 352

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVW+RDG IHTCLSVLTGHTGPVKCLAVE DR++S       ++WIVYSGSL
Sbjct: 353 SGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCLAVEADREASERRD---KKWIVYSGSL 409

Query: 361 DKS 363
           DKS
Sbjct: 410 DKS 412

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458438|ref|XP_002283775.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/363 (82%), Positives = 334/363 (92%), Gaps = 4/363 (1%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           +S EGSPMTMSPWNQT   +   WS+FEENLPQNGLIGSL REEGHIYSLAA+ +LLYTG
Sbjct: 52  LSGEGSPMTMSPWNQTSSEAKSSWSRFEENLPQNGLIGSLTREEGHIYSLAATGELLYTG 111

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF GFK++SGLVKAIVISGEKIFTGHQDGKIRVWK+SPKN SVHKRA
Sbjct: 112 SDSKNIRVWKNLKEFSGFKSNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNASVHKRA 171

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLKDIFKSSI PSNY+EVRR R+ALWIRHSDA+SC+SL+++ GLLY+ASWDRTFKV
Sbjct: 172 GTLPTLKDIFKSSINPSNYVEVRRRRSALWIRHSDAISCLSLNEEQGLLYSASWDRTFKV 231

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRISDSKCLES+SAHDDAVNSVV+SSEG++FTGSADG+VKVW+RE HGKGTKH+  QTLL
Sbjct: 232 WRISDSKCLESISAHDDAVNSVVASSEGMVFTGSADGSVKVWRRELHGKGTKHAFVQTLL 291

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQECAVTAL V++S S+VYCGSSDGLVNFWEREKQLSHGGVL+GHK+AVLCLAAA  LVF
Sbjct: 292 KQECAVTALCVNTSGSVVYCGSSDGLVNFWEREKQLSHGGVLRGHKVAVLCLAAAANLVF 351

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVWRR+G +HTCLSVLTGHTGPVKCLAV ED++S++      QRW+VYSGSL
Sbjct: 352 SGSADKTICVWRREGVVHTCLSVLTGHTGPVKCLAVGEDKESTAKN----QRWVVYSGSL 407

Query: 361 DKS 363
           DKS
Sbjct: 408 DKS 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815410|emb|CAN61238.1| hypothetical protein VITISV_003189 [Vitis vinifera]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/363 (82%), Positives = 333/363 (91%), Gaps = 4/363 (1%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           +S E SPMTMSPWNQT   +   WS+FEENLPQNGLIGSL REEGHIYSLAA+ +LLYTG
Sbjct: 52  LSXESSPMTMSPWNQTSSEAKSSWSRFEENLPQNGLIGSLTREEGHIYSLAATGELLYTG 111

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF GFK++SGLVKAIVISGEKIFTGHQDGKIRVWK+SPKN SVHKRA
Sbjct: 112 SDSKNIRVWKNLKEFSGFKSNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNASVHKRA 171

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLKDIFKSSI PSNY+EVRR R+ALWIRHSDA+SC+SL+++ GLLY+ASWDRTFKV
Sbjct: 172 GTLPTLKDIFKSSINPSNYVEVRRRRSALWIRHSDAISCLSLNEEQGLLYSASWDRTFKV 231

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRISDSKCLES+SAHDDAVNSVV+SSEG++FTGSADG+VKVW+RE HGKGTKH+  QTLL
Sbjct: 232 WRISDSKCLESISAHDDAVNSVVASSEGMVFTGSADGSVKVWRRELHGKGTKHAFVQTLL 291

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQECAVTAL V++S S+VYCGSSDGLVNFWEREKQLSHGGVL+GHK+AVLCLAAA  LVF
Sbjct: 292 KQECAVTALCVNTSGSVVYCGSSDGLVNFWEREKQLSHGGVLRGHKVAVLCLAAAANLVF 351

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVWRR+G +HTCLSVLTGHTGPVKCLAV ED++S++      QRW+VYSGSL
Sbjct: 352 SGSADKTICVWRREGVVHTCLSVLTGHTGPVKCLAVGEDKESTAKN----QRWVVYSGSL 407

Query: 361 DKS 363
           DKS
Sbjct: 408 DKS 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136642|ref|XP_002326910.1| predicted protein [Populus trichocarpa] gi|222835225|gb|EEE73660.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/363 (80%), Positives = 327/363 (90%), Gaps = 5/363 (1%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           MSCEGSPMTMSPWNQTG  SN  WS  EENLPQNGLIGSLVREEGHIYSLAA+KDLLYTG
Sbjct: 50  MSCEGSPMTMSPWNQTGAGSNFPWS-IEENLPQNGLIGSLVREEGHIYSLAATKDLLYTG 108

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF GFK+SSGLVKAI+I+GEKIFTGHQDGKIRVWK+ PKN +VHKR+
Sbjct: 109 SDSKNIRVWKNLKEFSGFKSSSGLVKAIIIAGEKIFTGHQDGKIRVWKVIPKNPTVHKRS 168

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLK++FKSSI+PS Y++VR +R+ALWI+HSDA+SC++L++D  LLY+ASWDRTFKV
Sbjct: 169 GTLPTLKEVFKSSIRPSAYVQVR-NRSALWIKHSDAISCLTLNEDRTLLYSASWDRTFKV 227

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRISDSKCLES++AHDDAVNSVV+S +GL+FTGSADGTVKVWKREQ GK TKHS  QTLL
Sbjct: 228 WRISDSKCLESINAHDDAVNSVVASLDGLVFTGSADGTVKVWKREQQGKRTKHSPVQTLL 287

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQE AVTAL V++S S+VYCGSSDG+VN+WE EKQL+HGGVLKGHKLAVLCLA+AG LVF
Sbjct: 288 KQESAVTALAVNTSGSVVYCGSSDGMVNYWECEKQLTHGGVLKGHKLAVLCLASAGNLVF 347

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVWRRD  IH C+SVLTGH GPVKCLAVEED + S       QRW+VYSGSL
Sbjct: 348 SGSADKTICVWRRDDKIHACMSVLTGHNGPVKCLAVEEDHEKSKDGD---QRWVVYSGSL 404

Query: 361 DKS 363
           DKS
Sbjct: 405 DKS 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067294|ref|XP_002302452.1| predicted protein [Populus trichocarpa] gi|222844178|gb|EEE81725.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/363 (80%), Positives = 326/363 (89%), Gaps = 5/363 (1%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
           MSCEGSPMTMSPWNQTG  SN  WS FEENLPQNGLIGSLVREEGHIYSLAA+KDLLYTG
Sbjct: 48  MSCEGSPMTMSPWNQTGGGSNFPWS-FEENLPQNGLIGSLVREEGHIYSLAATKDLLYTG 106

Query: 61  SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
           SDSKNIRVWKNLKEF GFK+SSGLVKAI+I+GEKIFTGHQDGKIRVWK+ PKN ++HKR+
Sbjct: 107 SDSKNIRVWKNLKEFSGFKSSSGLVKAIIIAGEKIFTGHQDGKIRVWKVIPKNPTIHKRS 166

Query: 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
           GTLPTLK+I KSSI+PS Y++VR +R+ALWI+H DA+SC++L +D  LLY+ASWDRTFKV
Sbjct: 167 GTLPTLKEILKSSIRPSAYVQVR-NRSALWIKHCDAISCLTLSEDKTLLYSASWDRTFKV 225

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WRISDS+CLES++AHDDAVNSVV+S EGL+FTGSADGTVKVWKREQ GK TKHS  QTLL
Sbjct: 226 WRISDSRCLESINAHDDAVNSVVASLEGLVFTGSADGTVKVWKREQQGKTTKHSPVQTLL 285

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
           KQE AVT+L V++S S+VYCGSSDG+VN+WE EKQLSHGGVLKGHKLAVLCLAAAG LVF
Sbjct: 286 KQESAVTSLAVNTSGSVVYCGSSDGMVNYWECEKQLSHGGVLKGHKLAVLCLAAAGNLVF 345

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360
           SGSADKTICVWRRDG +H C+SVLTGHTGPVKCLAVE D + S       QRW+VYSGSL
Sbjct: 346 SGSADKTICVWRRDGKLHACISVLTGHTGPVKCLAVEVDHEKSKDGD---QRWVVYSGSL 402

Query: 361 DKS 363
           DKS
Sbjct: 403 DKS 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438041|ref|XP_003589296.1| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Medicago truncatula] gi|355478344|gb|AES59547.1| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Medicago truncatula]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/365 (77%), Positives = 322/365 (88%), Gaps = 5/365 (1%)

Query: 1   MSCEGSPMTMSPWNQT--GPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLY 58
           +S EGSPM MSPWNQT   PFS P WSQ E+  PQN LIGSLVREEGHIYSLAAS DLLY
Sbjct: 64  LSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGDLLY 123

Query: 59  TGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK 118
           TGSDSKNIRVWKNL+E+CGFK++SGLVKAI+ISG+KIFTGHQDGKIRVWK+S KN SVHK
Sbjct: 124 TGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHK 183

Query: 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178
           RAGTLPTLKDIFKSSIKPSNY+EVR+HRTALWI+HSDAVSC+SL  D   LY+ASWDRT 
Sbjct: 184 RAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTV 243

Query: 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQT 238
           KVWRI+DSKCLES+++H+DAVN+VV  ++G++F+GSADGTVKVW+RE  GK TKH + + 
Sbjct: 244 KVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREPRGKATKHVMVKQ 303

Query: 239 LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKL 298
           LLKQECAVTAL + S+ S+VYCG+SDGLVNFWER+KQ  HGGVLKGHKLAVLCLA+AG L
Sbjct: 304 LLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNL 363

Query: 299 VFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSG 358
           VFSGSADKTICVW+RDG IHTC+SVLTGH GPVKCLAVE+DR+S +      QRWI+YSG
Sbjct: 364 VFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRESDARGD---QRWILYSG 420

Query: 359 SLDKS 363
           SLDKS
Sbjct: 421 SLDKS 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562315|ref|XP_003549417.1| PREDICTED: uncharacterized WD repeat-containing protein all2124-like [Glycine max]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/366 (75%), Positives = 317/366 (86%), Gaps = 4/366 (1%)

Query: 1   MSCEGSPMTMSPWNQT--GPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLY 58
           +S EGSPMTMSPWNQT   PFS P WSQ + ++PQN L+GSLVREEGHIYSLAAS DLLY
Sbjct: 50  LSGEGSPMTMSPWNQTTNSPFSKPQWSQEQNSVPQNALVGSLVREEGHIYSLAASGDLLY 109

Query: 59  TGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK 118
           TGSDSKNIRVWKNL+E+ GFK++SGLVK I++SG+KIFTGHQDGKIRVWK+SPKN S+HK
Sbjct: 110 TGSDSKNIRVWKNLEEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSLHK 169

Query: 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178
           RAGTLPTLKDIFKSSIKPSNY+EVRRH+TALWIRHSDAVSC+SL  D   LY+ASWDRT 
Sbjct: 170 RAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSADKTYLYSASWDRTI 229

Query: 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQT 238
           KVWRISDSKCLES+ AHDDAVN+VV    G++F+GSADGTVKVW+RE  GKG KH+  +T
Sbjct: 230 KVWRISDSKCLESIHAHDDAVNAVVCGDGGVMFSGSADGTVKVWRREPRGKGLKHAPVKT 289

Query: 239 LLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297
           LLKQECAVTAL + ++  S+VYCG+SDGLVNFWE +K  +HGGVLKGHKLAVLCL AAG 
Sbjct: 290 LLKQECAVTALAMDAAGGSMVYCGASDGLVNFWESDKNYAHGGVLKGHKLAVLCLTAAGT 349

Query: 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYS 357
           LVFSGSADKTICVW+R+G IHTC+SVLTGH GPVKCLAVEEDR +++      + W +YS
Sbjct: 350 LVFSGSADKTICVWKREGLIHTCMSVLTGHDGPVKCLAVEEDRKAAAKGDR-ERLWSLYS 408

Query: 358 GSLDKS 363
           GSLDKS
Sbjct: 409 GSLDKS 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460171|ref|XP_004147819.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus] gi|449524816|ref|XP_004169417.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/364 (77%), Positives = 319/364 (87%), Gaps = 4/364 (1%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENL-PQNGLIGSLVREEGHIYSLAASKDLLYT 59
           MS EGSPMTMSPWNQT  F+   WSQ EEN  PQNGLIGSLVREEGHIYSLAAS +LLYT
Sbjct: 53  MSGEGSPMTMSPWNQTSMFAKSPWSQVEENSGPQNGLIGSLVREEGHIYSLAASGELLYT 112

Query: 60  GSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119
           GSDSKNIRVWKNLKE+  FK+SSGLVKAI+ISGEKIFTGHQDGKIRVWK+S KN S HKR
Sbjct: 113 GSDSKNIRVWKNLKEYAAFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVSQKNPSDHKR 172

Query: 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179
           AGTLPTLKDIFKSSI P+NY+E R  R ALWI+HSDAVSC+SL +D  LLY+ASWDRT K
Sbjct: 173 AGTLPTLKDIFKSSINPNNYVEGRGRRRALWIKHSDAVSCLSLTEDKLLLYSASWDRTLK 232

Query: 180 VWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239
           VWRI+DSKCLES++ HDDAVNSVV+S EGL+FTGSADGTVKVWKRE  GK TKH+L ++L
Sbjct: 233 VWRIADSKCLESLNVHDDAVNSVVASVEGLVFTGSADGTVKVWKREAKGKATKHTLLESL 292

Query: 240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLV 299
           LKQECAVTAL V+++ ++VYCGSSDG+VNFWER+ +L+HGGVLKGHKL VLCL A G +V
Sbjct: 293 LKQECAVTALAVTAAGTVVYCGSSDGMVNFWERKGKLTHGGVLKGHKLTVLCLVAVGSMV 352

Query: 300 FSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGS 359
           FSGSADKTICVWRR+GA+HTCLSVLTGHTGPVKCLA EED +SS +     ++WIVYSGS
Sbjct: 353 FSGSADKTICVWRREGAVHTCLSVLTGHTGPVKCLAAEEDNESSKNGD---RQWIVYSGS 409

Query: 360 LDKS 363
           LDKS
Sbjct: 410 LDKS 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428610|ref|XP_002281238.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/365 (72%), Positives = 305/365 (83%), Gaps = 7/365 (1%)

Query: 2   SCEGSPMTMSPWNQ-TGPFSNPGWSQFEE--NLPQNGLIGSLVREEGHIYSLAASKDLLY 58
           S E SP+ MSPWN  + PF+   W++      LPQNGLIGS+VREEGH+YSLAA+ +LLY
Sbjct: 52  SGENSPLVMSPWNHPSSPFAKSPWTKSSSPMGLPQNGLIGSMVREEGHVYSLAATGNLLY 111

Query: 59  TGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK 118
           TGSDSKNIRVWKNLK + GFK++SGLVKAIVISGEKIFTGHQDGKIRVW++SPKN  +HK
Sbjct: 112 TGSDSKNIRVWKNLKAYSGFKSNSGLVKAIVISGEKIFTGHQDGKIRVWRVSPKNPKLHK 171

Query: 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178
           R G+LPT KD  KSSI P NY++VRR R+ L I+H DAVSC+SLDQD GLLY+ SWD+T 
Sbjct: 172 RIGSLPTFKDFLKSSINPKNYVKVRRKRSVLRIKHFDAVSCLSLDQDQGLLYSGSWDKTL 231

Query: 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQT 238
           KVWRISDSKCLES+ AHDDA+N+VV+   GL+FTGSADGTVKVW R+ HGKGTKH   QT
Sbjct: 232 KVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSADGTVKVWHRQLHGKGTKHLFLQT 291

Query: 239 LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKL 298
           LL QE A+T+L V++  +I+YCGSSDGLVNFWEREK L HGGVL+GHK AVLCLA AG L
Sbjct: 292 LLNQETAITSLAVNTEGAIIYCGSSDGLVNFWEREKHLKHGGVLRGHKHAVLCLATAGNL 351

Query: 299 VFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSG 358
           VFSGSADK+ICVWRR+G IHTCLSVLTGHTGPVKCLAVEED++S+       QRWIVYSG
Sbjct: 352 VFSGSADKSICVWRREGGIHTCLSVLTGHTGPVKCLAVEEDQESTKRD----QRWIVYSG 407

Query: 359 SLDKS 363
           SLDKS
Sbjct: 408 SLDKS 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.978	0.774	0.787	4.8e-158
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.975	0.725	0.664	4e-129
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.964	0.750	0.629	3.9e-125
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.970	0.757	0.623	4e-122
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.885	0.928	0.705	9.5e-121
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.961	0.754	0.621	6e-119
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.763	0.724	0.426	5.3e-71
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.894	0.792	0.435	3.3e-70
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.836	0.742	0.423	9.7e-64
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.720	0.633	0.447	7.1e-61

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
 Identities = 286/363 (78%), Positives = 321/363 (88%)

Query:     1 MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTG 60
             MSCEGSPM MSPWNQ  PF+   WS  EENLPQNGLIGSLVREEGHIYSLAA+KDLLYTG
Sbjct:    53 MSCEGSPMMMSPWNQATPFTQTQWSTVEENLPQNGLIGSLVREEGHIYSLAATKDLLYTG 112

Query:    61 SDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120
             SDSKNIRVWKNLKEF  FK +SGLVKAIVISGEKIFTGHQDGKIRVWK+SPKNQS+HKR+
Sbjct:   113 SDSKNIRVWKNLKEFSAFKCNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNQSLHKRS 172

Query:   121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180
             GTLPTLKDIFK+S+KP NY+EV++HRTALWI+H+DAVSC+SL+ + GLLY+ASWDRT KV
Sbjct:   173 GTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKV 232

Query:   181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
             WRI+DSKCLES+ AHDDAVNSVVS++E ++F+GSADGTVK WKR+Q GK TKH+L QTL 
Sbjct:   233 WRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLT 292

Query:   241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
             KQE AVTAL VS + + VY GSSDGLVNFWEREKQL++GG+LKGHKLAVLCL  AG LVF
Sbjct:   293 KQESAVTALAVSKNGAAVYFGSSDGLVNFWEREKQLNYGGILKGHKLAVLCLEVAGSLVF 352

Query:   301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDXXXXXXXCAQRWIVYSGSL 360
             SGSADKTICVW+RDG IHTCLSVLTGHTGPVKCLAVE DR+         ++WIVYSGSL
Sbjct:   353 SGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCLAVEADREASERRD---KKWIVYSGSL 409

Query:   361 DKS 363
             DKS
Sbjct:   410 DKS 412

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 246/370 (66%), Positives = 288/370 (77%)

Query:     2 SCEGSPMTMSPWNQTGPFSNPGWSQFEEN--LPQNGLIGSLVREEGHIYSLAASKDLLYT 59
             S EGSP  MSPW +  P   P  + F E+  L  NGLIGS+VR+EGHIYSLAAS DLLYT
Sbjct:    84 SGEGSPCVMSPWARVSP---PWGADFNEDNVLETNGLIGSIVRKEGHIYSLAASGDLLYT 140

Query:    60 GSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119
             GSDSKNIRVWKNLKE  GFK+SSGL+KAIVI G++IFTGHQDGKIR+WK+S +    HKR
Sbjct:   141 GSDSKNIRVWKNLKEHAGFKSSSGLIKAIVIFGDRIFTGHQDGKIRIWKVSKRKPGKHKR 200

Query:   120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179
              GTLPT K + KSS+ P +++EVRR+R ++  +H+DAVS +SLD + GLLY++SWD T K
Sbjct:   201 VGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIK 260

Query:   180 VWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239
             VWRI+DSKCLES+ AHDDA+NSV+S  + L+FTGSADGTVKVWKRE  GKGTKH+LAQ L
Sbjct:   261 VWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGSADGTVKVWKRELQGKGTKHTLAQVL 320

Query:   240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLV 299
             LKQE AVTAL V S  SIVYCGSSDGLVN+WER K+   GG+LKGHK AVLCL  AG L+
Sbjct:   321 LKQENAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGIAGNLL 380

Query:   300 FSGSADKTICVWRRDGA--IHTCLSVLTGHTGPVKCLAVEEDRDXXXXXXXCA----QRW 353
              SGSADK ICVWRRD +   H CLSVLTGH GPVKCLAVEE+R              ++W
Sbjct:   381 LSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCLAVEEERACHQGAKASVAEGDRKW 440

Query:   354 IVYSGSLDKS 363
             I+YSGSLDKS
Sbjct:   441 IIYSGSLDKS 450

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
 Identities = 228/362 (62%), Positives = 277/362 (76%)

Query:     8 MTMSPWNQT-GPFSNPGWSQFEENLPQ---NGLIGSLVREEGHIYSLAASKDLLYTGSDS 63
             M+ SPWNQT  P+    W     N+     NGLIG++VR++GH+YSLAAS DLL+TGSDS
Sbjct:    98 MSPSPWNQTYSPYYKSPWIYQTRNIDDDTDNGLIGTIVRQDGHVYSLAASGDLLFTGSDS 157

Query:    64 KNIRVWKNLKEFCGFKASSGLVKAIVISGE-KIFTGHQDGKIRVWKISPKNQSVHKRAGT 122
             KNIRVWK+LK+  GFK++SGLVKAIVI+G+ +IFTGHQDGKIRVW+ S +    + R G+
Sbjct:   158 KNIRVWKDLKDHTGFKSTSGLVKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGGYSRIGS 217

Query:   123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182
             LPTLK+    S+ P NY+EVRR +  L IRH DAVSC+SL+++ GLLY+ SWD+T KVWR
Sbjct:   218 LPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWR 277

Query:   183 ISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ 242
             +SDSKCLES+ AHDDA+N+V +  + L+FTGSADGT+KVWKRE  GKGTKH L   L+KQ
Sbjct:   278 LSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQ 337

Query:   243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302
             E AVTAL V+ + ++VYCGSSDG VNFWE +K LSHGG L+GH+LAVLCLAAAG LV SG
Sbjct:   338 ENAVTALAVNITAAVVYCGSSDGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSLVLSG 397

Query:   303 SADKTICVWRRDG-AIHTCLSVLTGHTGPVKCLAVEEDRDXXXXXXXCAQRWIVYSGSLD 361
              ADK ICVWRR+G   H+CLSVL  H GPVKCL   ED D         Q+WIVYSGSLD
Sbjct:   398 GADKNICVWRRNGDGSHSCLSVLMDHVGPVKCLTAVED-DGEGHREKGDQKWIVYSGSLD 456

Query:   362 KS 363
             KS
Sbjct:   457 KS 458

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 232/372 (62%), Positives = 281/372 (75%)

Query:     6 SPMTMSPWNQT-GPFSNPGW------SQFEENLPQNGLIGSLVREEGHIYSLAASKDLLY 58
             S +T SPWNQT  P+    W      S FE++ P NGLIG++VR+EGH+YSLAAS DLL+
Sbjct:    90 SSVTQSPWNQTYSPYHKSPWIYQTRNSDFEDD-PDNGLIGTVVRQEGHVYSLAASGDLLF 148

Query:    59 TGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGE-KIFTGHQDGKIRVWKISPKNQSVH 117
             TGSDSKNIRVWK+LK+F GFK++SG VKAIV++ + ++FTGHQDGKIRVW+ S KN   +
Sbjct:   149 TGSDSKNIRVWKDLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPEKY 208

Query:   118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRT 177
              R G+LPTLK+    S+ P NY+EVRR +  L IRH DAVSC+SL++D GLLY+ SWD+T
Sbjct:   209 SRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLGLLYSGSWDKT 268

Query:   178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ 237
              KVWR+SDSKCLES+ AHDDAVN+VVS  + L+FTGSADGT+KVWKRE  GK  KH L Q
Sbjct:   269 LKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKEMKHVLVQ 328

Query:   238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297
              L+KQE AVTAL V+ + ++VYCGSSDG VNFWER+K L+H G + GH++AVLCLA AG 
Sbjct:   329 VLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQKYLTHKGTIHGHRMAVLCLATAGS 388

Query:   298 LVFSGSADKTICVWRRDG-AIHTCLSVLTGHTGPVKCLAV----EEDR-DXXXXXXXCAQ 351
             L+ SG ADK ICVW+R+G   HTCLSVL  H GPVKCLA     EED  D         Q
Sbjct:   389 LLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHNDGDDGGEKGDQ 448

Query:   352 RWIVYSGSLDKS 363
             RWIVYSGSLD S
Sbjct:   449 RWIVYSGSLDNS 460

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 235/333 (70%), Positives = 269/333 (80%)

Query:    34 NGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGE 93
             + L+G +VREEGHIYSLAA+ DLLYTGSD+  IRVWKNL EF GFK++SGLVKAIVIS E
Sbjct:    14 DSLVGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNSGLVKAIVISRE 73

Query:    94 -KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152
              K+FTGHQDGKIRVWK S KN  V+ RAG+LP LKD+ KSS+KPSNY+EVRR RTALWI+
Sbjct:    74 AKVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIK 133

Query:   153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
             HSDAVSC+SL +D GLLY+ASWDRT KVWRI D KC+ES+ AHDDAVNSV +++E L+FT
Sbjct:   134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSV-TTAESLVFT 192

Query:   213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
             GSADGTVKVWKRE  GK T HSL QTLLKQE AVTALV  +S   VY GSSDG VNFWE 
Sbjct:   193 GSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALV--TSHMAVYSGSSDGAVNFWEM 250

Query:   273 --EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP 330
               +K L H  V K H+LAVLC+AAAGKL+FSG+ADK ICVWRR+G +HTC+SVLTGHTGP
Sbjct:   251 GDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGKVHTCVSVLTGHTGP 310

Query:   331 VKCLAVEEDRDXXXXXXXCAQRWIVYSGSLDKS 363
             VKCLAV E             R ++YSGSLDKS
Sbjct:   311 VKCLAVVEPSGGEEEDGGDG-RLVLYSGSLDKS 342

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
 Identities = 233/375 (62%), Positives = 282/375 (75%)

Query:     6 SPMTMSPWN-QTGPFS--NPGWS---------QFEENLPQNGLIGSLVREEGHIYSLAAS 53
             SP++ SPW+ Q  P +  +P  S         +   N   N L+GSLVREEGHIYSLA S
Sbjct:    48 SPLSKSPWSVQVDPSAVDSPYHSVKVTTDTTKEKSTNHSPNILLGSLVREEGHIYSLATS 107

Query:    54 KDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKN 113
              DLLYTGSDSKNIRVWKN  EF  FK++SGLVKAIV++G+KIFTGHQDGKIRVWK + K 
Sbjct:   108 GDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAASKE 167

Query:   114 QSVHKRAGTLPTLKDIFKSSIKPSNYIE-VRRHRT--ALWIRHSDAVSCMSLDQDCGLLY 170
              +VH+R GT+P L D  ++SI PS+Y    RR+R+  AL  RH DA+SC++L +D  LLY
Sbjct:   168 SNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLY 227

Query:   171 TASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG 230
             + SWD+TFKVWR+SD +C+ESV+AH+DAVN+VVS  +GL+FTGSADGTVKVW+RE   K 
Sbjct:   228 SGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKD 287

Query:   231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL 290
             TKH  ++TLLKQ+CAVTA+ V  S ++VYCGSSDG VNFWERE  + +GGVLKGHKLAVL
Sbjct:   288 TKHFFSETLLKQDCAVTAIAVDQSATLVYCGSSDGTVNFWERENNMKNGGVLKGHKLAVL 347

Query:   291 CLAAAGKLVFSGSADKTICVWRRD--GAIHTCLSVLTGHTGPVKCLAVEEDRDXXXXXXX 348
             CL AAG L+FSGSAD  I VWRR   G  H CLSVLTGH GPVKCLAVE D++       
Sbjct:   348 CLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERDQESVSGE-- 405

Query:   349 CAQRWIVYSGSLDKS 363
               +RWIVYSGSLD+S
Sbjct:   406 --RRWIVYSGSLDRS 418

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 127/298 (42%), Positives = 180/298 (60%)

Query:    77 GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPK-NQSV----HKRAGTLPTLKDIFK 131
             G +   G VK++VI  +K+FT HQD KIRVWKI+    + V    +    T+PT+ D F 
Sbjct:    83 GERGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFA 142

Query:   132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191
               + P N +E+RRH+ A W+ H DAVS ++L +D  LLY+ SWDRT K+WR +D KCLES
Sbjct:   143 KCLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLES 202

Query:   192 -VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKR----EQHGKGTKHSLAQTLLKQECAV 246
               +AHDDA+N+V  S  G I+TGS+D  +KVW++    E   K  KHSL   L +    +
Sbjct:   203 FTNAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGI 262

Query:   247 TALVVSSSR-SIVYCGSSDGLVNFWEREK--QLSHGGVLKGHKLAVLCLAAAGKLVFSGS 303
              AL +S +  S+++ G SDG +  WER+    +   G+L+GH  +VLCLA    ++ SGS
Sbjct:   263 NALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDILCSGS 322

Query:   304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDXXXXXXXCAQRWIVYSGSLD 361
             ADKT+ +W+     ++CL++L GH GPVKCL     RD           + +YSG LD
Sbjct:   323 ADKTVRLWKCSAKDYSCLAMLEGHLGPVKCLT-GAFRDSRKADEAS---YHIYSGGLD 376

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 158/363 (43%), Positives = 215/363 (59%)

Query:    26 QFEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKAS---- 81
             Q + +   +  + +L  +  ++ SLA S  LLYTGS +  IRVW     F    ++    
Sbjct:    51 QHQSSSVDHHCLATLKDKSSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPEYSTGDDR 110

Query:    82 ------SGLVKAIVISGEKIFTGHQDGKIRVWKI---SPKNQSVHKRAGTLPTLKDIFKS 132
                   +G VK++VI G+K+ + HQD KIRVWKI   S +    +K   TLPT+ D FK+
Sbjct:   111 NVVANGNGGVKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKT 170

Query:   133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV 192
                  +Y+EVRRH+   W+ H DAVS ++L QD  LLY+ASWDR+FK+WR SD KCL+S+
Sbjct:   171 LFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSI 230

Query:   193 S-AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251
               AHDDA+N++V S +G ++TGSAD  +KVW +    K  KHSL  TL K   AV AL +
Sbjct:   231 EKAHDDAINAIVVSKDGFVYTGSADKKIKVWNK----KDKKHSLVATLTKHLSAVNALAI 286

Query:   252 SSSRSIVYCGSSDGLVNFWER-------EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304
             S    ++Y G+ D  +  WER       E  +S  G L+GH+ A++CLA A  LV SGSA
Sbjct:   287 SEDGKVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSA 346

Query:   305 DKTICVWRRDGAI----HTCLSVLTGHTGPVKCLAVEEDRDXXXXXXXCAQRWIVYSGSL 360
             DK++ VWRR G +    ++CL+VL GHT PVK LAV            C    +VYSGSL
Sbjct:   347 DKSLRVWRR-GLMEKEGYSCLAVLEGHTKPVKSLAVSVSDSDSNSDYSC----MVYSGSL 401

Query:   361 DKS 363
             D S
Sbjct:   402 DLS 404

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 143/338 (42%), Positives = 203/338 (60%)

Query:    45 GHIYSLAASKDLLYTGSDSKNIRVWK--NLKEFCGFKASSGLVKAIVISGEKIFTGHQDG 102
             G + SLA   + L + S  K+I VW+  +LK F  F    G VKA+V  G K+FT HQD 
Sbjct:    62 GSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSVGSKVFTAHQDS 121

Query:   103 KIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS 161
             +IRVWK+S +N ++  +   TLPT KD     +K SNY++ RR+   LWI H+D++SC++
Sbjct:   122 RIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISCLA 181

Query:   162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKV 221
             +    G++Y+ SWD+T KVWR+SD KCLES+ AHDDA+N +V+  +G +++ SADG VK+
Sbjct:   182 VH--AGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAG-DGRVYSASADGKVKI 238

Query:   222 W---KREQ-----HGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
             W   KR+Q         + H L  TL  + E +V ++VVS   + VY G SDG V  WE+
Sbjct:   239 WGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGWEK 298

Query:   273 -EKQLSH-----GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTC-LSVLT 325
              EK+        G   +GH +AVLC+   G++V SGSADK+I +WRR+     C   V+ 
Sbjct:   299 KEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGVIH 358

Query:   326 GHTGPVKCLAVEEDRDXXXXXXXCAQRWIVYSGSLDKS 363
             GH GPVKCL    +             +++YSG LDKS
Sbjct:   359 GHEGPVKCLQASPNN--------VGAGFMLYSGGLDKS 388

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 123/275 (44%), Positives = 177/275 (64%)

Query:    71 NLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130
             +L  F G    SG VK++  SGEKIFT HQDGKI VWK++ K  S +K+  TLPTL D  
Sbjct:   114 HLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWKLTAK--SGYKQLTTLPTLNDRL 171

Query:   131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE 190
             +    P NY++VRRH+  LWI H+DAV+ +++    G +Y+ SWD+T K+WR SD +C E
Sbjct:   172 RRFALPKNYVQVRRHKKRLWIEHADAVTALAVSD--GFIYSVSWDKTLKIWRASDLRCKE 229

Query:   191 SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250
             S+ AHDDAVN++  S+ G ++TGSAD  ++VW +    K  +H+L  TL K + AV AL 
Sbjct:   230 SIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEK--RHTLVATLEKHKSAVNALA 287

Query:   251 VSSSRSIVYCGSSDGLVNFWEREKQLSH---GGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
             ++   S+++ GS D  +  WERE   ++    G L+GH  A+L L     L+ SGSAD+T
Sbjct:   288 LNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRT 347

Query:   308 ICVWRRD-GAIHTCLSVLTGHTGPVKCLAVEEDRD 341
             + +WRR   + ++CL VL+GHT PVK LA   +++
Sbjct:   348 VRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKE 382

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  138 bits (349), Expect = 2e-38
 Identities = 90/332 (27%), Positives = 132/332 (39%), Gaps = 65/332 (19%)

Query: 44  EGH---IYSLAASKD--LLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVIS--GEK 94
           +GH   +  +A S D  LL TGS    I+VW  +  +     K  +G V+ +  S  G  
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 95  IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154
           + +G  D  IR+W +    + V    G                               H+
Sbjct: 66  LASGSSDKTIRLWDLE-TGECVRTLTG-------------------------------HT 93

Query: 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIFTG 213
             VS ++   D  +L ++S D+T KVW +   KCL ++  H D VNSV  S     + + 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273
           S DGT+K+W               TL      V ++  S     +   SSDG +  W+  
Sbjct: 154 SQDGTIKLW------DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Query: 274 KQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
                 G L+GH+  V  +A +  G L+ SGS D TI VW        C+  L+GHT  V
Sbjct: 208 TG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSV 264

Query: 332 KCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363
             LA   D               + SGS D +
Sbjct: 265 TSLAWSPDGK------------RLASGSADGT 284

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.5 bits (215), Expect = 7e-19
 Identities = 86/338 (25%), Positives = 138/338 (40%), Gaps = 30/338 (8%)

Query: 52  ASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP 111
            S  LL        + +             S    A    GE + +G  DG I++W +  
Sbjct: 37  ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN 96

Query: 112 KNQ-----------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTAL-----WIRHSD 155
             +           SV K A + P    I  +S      +++    T          HS+
Sbjct: 97  GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156

Query: 156 AVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFT 212
           +V+ ++   D  LL + S  D T K+W +   K L +++ H D V+S+  S +G  LI +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
           GS+DGT+++W        +   L ++ L           S   S++  GSSDG +  W+ 
Sbjct: 217 GSSDGTIRLW------DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL 270

Query: 273 EKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP 330
               S    L GH  +VL +A    GKL+ SGS+D T+ +W  +         L GH GP
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330

Query: 331 VKCLAVEEDRD---SSSSTSSCAQRWIVYSGSLDKSDD 365
           V  L+   D     S  S     + W + +G   K+ +
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 21/213 (9%)

Query: 30  NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCG--FKASSGLV 85
           +L     + +L     ++ S+A S D  +L + S  K I+VW      C    +  +  V
Sbjct: 79  DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138

Query: 86  KAIVISGEK--IFTGHQDGKIRVWKISP----KNQSVHKRAGT----LPTLKDIFKSSIK 135
            ++  S +   + +  QDG I++W +         + H          P  + +  SS  
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-- 196

Query: 136 PSNYIEVRRHRTALWIR----HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191
               I++    T   +     H + V+ ++   D  LL + S D T +VW +   +C+++
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256

Query: 192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223
           +S H ++V S+  S +G  + +GSADGT+++W 
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.9 bits (185), Expect = 5e-15
 Identities = 86/327 (26%), Positives = 127/327 (38%), Gaps = 49/327 (14%)

Query: 33  QNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKA 87
              LI +L      + SLA S D   L    S    I++W  +  K        +  V +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 88  IVISGEK---IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR 144
           +  S +    I +G  DG IR+W +S                                  
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGK------------------------------L 233

Query: 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI-SDSKCLESVSAHDDAVNSV- 202
            R+ L       VS  S D    LL + S D T ++W + S S  L ++S H  +V SV 
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291

Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCG 261
            S    L+ +GS+DGTV++W  E     +      TL   E  V++L  S   S +V  G
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSL----TLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321
           S DG +  W+         +     +  +  +  G++V SGS D T+ +W       + L
Sbjct: 348 SDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST--GSLL 405

Query: 322 SVLTGHTGPVKCLAVEEDRDSSSSTSS 348
             L GHT  V  L    D  S +S SS
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSS 432

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 3e-10
 Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 27/270 (10%)

Query: 30  NLPQNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVK 86
           +L     + +L      + SLA S D   L+ +GS    IR+W            SG   
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 87  AIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI------------- 129
           ++V S    G  + +G  DG IR+W +   +  +   +G   ++  +             
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKC 188
              +++  +    +   +     H   VS +S   D  LL +  S D T ++W +   K 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 189 LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248
           L+++  H + ++   S    ++ +GS DGTV++W           SL + L      VT+
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLS------TGSLLRNLDGHTSRVTS 417

Query: 249 LVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278
           L  S     +  GSSD  +  W+ +  L  
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA- 293
           L +TL      VT +  S    ++  GS DG +  W+ E        LKGH   V  +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAA 59

Query: 294 -AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352
            A G  + SGS+DKTI +W  +     C+  LTGHT  V  +A   D             
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGR----------- 106

Query: 353 WIVYSGSLDKS 363
            I+ S S DK+
Sbjct: 107 -ILSSSSRDKT 116

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 187 KCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWK 223
           K L ++  H   V SV  S    L+ +GS DGTV+VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 185 DSKCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWK 223
             + L+++  H   V SV  S     + +GS DGT+K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
           H+  V+ ++   D  LL + S D T +VW
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
           H+  V+ ++   D   L + S D T K+W
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 280 GVLKGHKLAVLCLA--AAGKLVFSGSADKTICVW 311
             LKGH   V  +A    G L+ SGS D T+ VW
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PTZ00421	493	coronin; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1334	559	consensus WD40 repeat protein [General function pr	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.73
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.66
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.49
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.48
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.44
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.4
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.21
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.17
PRK01029	428	tolB translocation protein TolB; Provisional	99.17
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.12
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
KOG2695	425	consensus WD40 repeat protein [General function pr	99.03
KOG2314	698	consensus Translation initiation factor 3, subunit	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
KOG3621	726	consensus WD40 repeat-containing protein [General	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
PRK04043	419	tolB translocation protein TolB; Provisional	98.82
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.81
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.68
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.58
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.56
KOG3621	726	consensus WD40 repeat-containing protein [General	98.53
KOG2314	698	consensus Translation initiation factor 3, subunit	98.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.4
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.29
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.27
PRK02888	635	nitrous-oxide reductase; Validated	98.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.22
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.17
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.05
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.91
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.87
KOG2444	238	consensus WD40 repeat protein [General function pr	97.87
PHA02713	557	hypothetical protein; Provisional	97.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.73
PRK02888	635	nitrous-oxide reductase; Validated	97.72
KOG2395	644	consensus Protein involved in vacuole import and d	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.64
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.61
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.54
COG3391	381	Uncharacterized conserved protein [Function unknow	97.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.52
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.47
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.34
KOG2444	238	consensus WD40 repeat protein [General function pr	97.27
PHA02713	557	hypothetical protein; Provisional	97.26
KOG2395	644	consensus Protein involved in vacuole import and d	97.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.15
PHA03098	534	kelch-like protein; Provisional	97.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.02
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.95
PRK13616	591	lipoprotein LpqB; Provisional	96.94
PRK13616	591	lipoprotein LpqB; Provisional	96.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.85
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.84
PHA03098	534	kelch-like protein; Provisional	96.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.63
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.55
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	96.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.38
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.33
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.23
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.21
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.11
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.99
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.97
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.77
PHA02790	480	Kelch-like protein; Provisional	95.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.72
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.71
COG4590	733	ABC-type uncharacterized transport system, permeas	95.42
KOG2247	615	consensus WD40 repeat-containing protein [General	95.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.41
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.39
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.2
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.07
PRK13684	334	Ycf48-like protein; Provisional	95.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.99
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.99
PHA02790	480	Kelch-like protein; Provisional	94.99
PLN02193	470	nitrile-specifier protein	94.96
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.84
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.76
PLN02153	341	epithiospecifier protein	94.67
COG5167	776	VID27 Protein involved in vacuole import and degra	94.67
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.45
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.3
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.22
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.21
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.06
COG5276	370	Uncharacterized conserved protein [Function unknow	94.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.88
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.58
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.5
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.45
KOG2247	615	consensus WD40 repeat-containing protein [General	93.38
COG5276	370	Uncharacterized conserved protein [Function unknow	93.3
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.78
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.69
PRK10115	686	protease 2; Provisional	92.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.23
COG5167	776	VID27 Protein involved in vacuole import and degra	92.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.72
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.29
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.03
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.87
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.5
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.01
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.73
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.49
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.37
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	89.17
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	88.95
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.94
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.55
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.47
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.47
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.05
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.31
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.98
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.69
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.5
KOG2714	465	consensus SETA binding protein SB1 and related pro	85.27
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.17
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	84.78
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.93
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.3
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.3
PRK13684	334	Ycf48-like protein; Provisional	83.04
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.7
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.33
COG4590	733	ABC-type uncharacterized transport system, permeas	81.81
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.46
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	81.24
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	80.46
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.39

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-53  Score=326.19  Aligned_cols=289  Identities=25%  Similarity=0.373  Sum_probs=254.3

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ...-.++.||.++|.|++|+|+  .|+||+.|.++|+||+.  ++..+.++|...|.|++|+  |..|++|+.||+|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            4455679999999999999976  99999999999999976  4566789999999999998  8899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-----CCCEEEEEeCCCcEEEEE
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-----DCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd  182 (368)
                      |..++++....                               +.+|...|++++|.|     ..++|++++.||.|+|||
T Consensus       185 dpktg~~~g~~-------------------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  185 DPKTGQQIGRA-------------------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCCCCccccc-------------------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            99998764433                               345999999999976     567999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC--------------------------------
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG--------------------------------  230 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------------------  230 (368)
                      +..++++..+.+|..+|+|+.|..+|++++|+.|++|++|+...+...                                
T Consensus       234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~  313 (480)
T KOG0271|consen  234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK  313 (480)
T ss_pred             ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence            999999999999999999999999999999999999999986542100                                


Q ss_pred             -----------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          231 -----------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       231 -----------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                                                               ...+++....+|+.-|+.+.|+||++++|+++-|..|++
T Consensus       314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL  393 (480)
T ss_pred             CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence                                                     011223355678889999999999999999999999999


Q ss_pred             EeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ||.++++.+ ..+.+|-..|+.+++  |.++|++|+.|.++++|++.+.  +....+.+|.+.|.++.|+|||+      
T Consensus       394 W~g~tGk~l-asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk--Kl~~DLpGh~DEVf~vDwspDG~------  464 (480)
T KOG0271|consen  394 WDGRTGKFL-ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK--KLKQDLPGHADEVFAVDWSPDGQ------  464 (480)
T ss_pred             eeCCCcchh-hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee--eecccCCCCCceEEEEEecCCCc------
Confidence            999998776 688899999976665  7889999999999999999887  77889999999999999999999      


Q ss_pred             cceEEEEEeeCCcccccccCC
Q 047325          348 SCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       348 ~~~~~w~l~sg~~D~~v~i~h  368 (368)
                            .+++|+.|+.+|+|.
T Consensus       465 ------rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 ------RVASGGKDKVLRLWR  479 (480)
T ss_pred             ------eeecCCCceEEEeec
Confidence                  899999999999983

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-50  Score=315.18  Aligned_cols=284  Identities=23%  Similarity=0.325  Sum_probs=253.1

Q ss_pred             CCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe----CCEEEEEeCCCe
Q 047325           32 PQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS----GEKIFTGHQDGK  103 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~  103 (368)
                      .+-.+...-.+-+.+|..+.|+.  +.|+|||.+|.+++|+..  ..++.+.+|...|.++.|.    +..+++|+.||+
T Consensus       163 ~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt  242 (459)
T KOG0272|consen  163 QSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT  242 (459)
T ss_pred             hhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence            33445556667788999988874  499999999999999987  4577899999999999998    348999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      +++|++++......                                +.+|...|..++|+|+|++|++++.|.+-++||+
T Consensus       243 vklw~~~~e~~l~~--------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  243 VKLWKLSQETPLQD--------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             eeeeccCCCcchhh--------------------------------hhcchhhheeeeecCCCceeeecccccchhhccc
Confidence            99999988754333                                3459999999999999999999999999999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      ++++.+...++|...|.+++|.+|| .+++|+.|..-+|||+|++      .++..+.+|...|.+++|+|+|..||+|+
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg------r~im~L~gH~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG------RCIMFLAGHIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC------cEEEEecccccceeeEeECCCceEEeecC
Confidence            9999999999999999999999999 9999999999999999988      35778889999999999999999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEE--EEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      .|++++|||++.... ...+.+|..-|  ++++| .|.+|++++.|++++||..++  ..+++.+.||.+.|.++..+++
T Consensus       365 ~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d  441 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPD  441 (459)
T ss_pred             CCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccC
Confidence            999999999998666 47888999888  55666 589999999999999995554  5899999999999999999999


Q ss_pred             CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          340 RDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ++            .++|++.|+++|+|-
T Consensus       442 ~~------------~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 SQ------------AIATSSFDRTIKLWR  458 (459)
T ss_pred             Cc------------eEEEeccCceeeecc
Confidence            99            789999999999993

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-45  Score=274.14  Aligned_cols=285  Identities=22%  Similarity=0.329  Sum_probs=244.7

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      ..++|+||.+.|.++.|.++  +|+++|.||.+.|||..+  ....++.....|..++|+  ++++++|+.|....||++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            34789999999999999866  999999999999999764  455566778889988887  899999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      .+.+.....                          ...+.+.+|.+-+.|+.|.+| ..|++++.|.++.+||+++++.+
T Consensus       127 s~~d~~g~~--------------------------~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  127 STRDAEGNV--------------------------RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             ccccccccc--------------------------eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence            865321111                          123345679999999999885 57889999999999999999999


Q ss_pred             EEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          190 ESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       190 ~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      ..|.+|.+.|.++.++| ++ .+++|+.|+..++||+|.+      .+.+.+.+|+..|++++|.|+|.-+++|+.|++.
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------ceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence            99999999999999999 55 9999999999999999987      4789999999999999999999999999999999


Q ss_pred             EEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          268 NFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      ++||++..+.+.....   ......++|+..|++|++|..|.++.+||.-..  +.+..+.+|.+.|+++..+|||.   
T Consensus       254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~--e~vg~L~GHeNRvScl~~s~DG~---  328 (343)
T KOG0286|consen  254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG--ERVGVLAGHENRVSCLGVSPDGM---  328 (343)
T ss_pred             EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc--ceEEEeeccCCeeEEEEECCCCc---
Confidence            9999998655532221   112233566778999999999999999976555  77888999999999999999999   


Q ss_pred             cCCcceEEEEEeeCCcccccccC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                               -++|||.|.++|||
T Consensus       329 ---------av~TgSWDs~lriW  342 (343)
T KOG0286|consen  329 ---------AVATGSWDSTLRIW  342 (343)
T ss_pred             ---------EEEecchhHheeec
Confidence                     79999999999999

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-43  Score=263.27  Aligned_cols=277  Identities=23%  Similarity=0.372  Sum_probs=227.0

Q ss_pred             ceeeeccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           35 GLIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      .+..++.+|++.|..++..   ++.+++++.|.++.+|++..       ....+.+|...|..+..+  +++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            4567899999999999875   55999999999999998752       366789999999999887  89999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      ++++||+.+++.                                .+.|.||...|.+++|++|...+++|+.|.+|++|+
T Consensus        86 ~lrlWDl~~g~~--------------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   86 TLRLWDLATGES--------------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             eEEEEEecCCcE--------------------------------EEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            999999998853                                345667999999999999999999999999999999


Q ss_pred             ccCCeEEEEeecC--CCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325          183 ISDSKCLESVSAH--DDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI  257 (368)
Q Consensus       183 ~~~~~~~~~~~~~--~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  257 (368)
                      .... +..++..+  ...|.|+.|+|+.   +|++++.|++|++||+++.      +....+.+|.+.++.++++|||..
T Consensus       134 t~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  134 TLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSL  206 (315)
T ss_pred             eccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCE
Confidence            8644 44444433  7889999999984   9999999999999999876      456778899999999999999999


Q ss_pred             EEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee----cc----
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT----GH----  327 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h----  327 (368)
                      .++|+.||.+.+||++.++.+.  ..+|...|  ++|+|+.-.|+.+. +..|+|||+++.  ..+..++    +.    
T Consensus       207 casGgkdg~~~LwdL~~~k~ly--sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~--~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK--AVVEELKLDGIGPSSKA  281 (315)
T ss_pred             EecCCCCceEEEEEccCCceeE--eccCCCeEeeEEecCCceeEeecc-CCceEEEeccch--hhhhhcccccccccccc
Confidence            9999999999999999887753  33444555  66666666666655 445999999876  3443332    11    


Q ss_pred             -ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          328 -TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       328 -~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                       ...-.+++|++||+            .|+.|-.|+.||+|
T Consensus       282 ~~~~clslaws~dG~------------tLf~g~td~~irv~  310 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQ------------TLFAGYTDNVIRVW  310 (315)
T ss_pred             CCcEEEEEEEcCCCc------------EEEeeecCCcEEEE
Confidence             22356789999999            67788888888877

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-44  Score=283.21  Aligned_cols=245  Identities=23%  Similarity=0.357  Sum_probs=223.8

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQ  100 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  100 (368)
                      -+.++...+.+|.||.+.|.++.|+|.    .+|||+.||++++|++.  +.+..+.+|...|..++|+  |++|+|++.
T Consensus       202 W~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  202 WSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             eecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc
Confidence            345667889999999999999999854    89999999999999987  4678899999999999998  999999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      |.+-++||++++.......                                ||...|.+++|++||.++++|+.|..-+|
T Consensus       282 D~tWRlWD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  282 DSTWRLWDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             ccchhhcccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhhe
Confidence            9999999999988655443                                49999999999999999999999999999


Q ss_pred             EEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEE
Q 047325          181 WRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIV  258 (368)
Q Consensus       181 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  258 (368)
                      ||+++++++..+.+|..+|.++.|+|+| .|++|+.|++++|||++...      .+..+..|..-|+.++|+| .|.+|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------ELYTIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------cceecccccchhhheEecccCCeEE
Confidence            9999999999999999999999999999 99999999999999999763      4788899999999999999 78899


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEe
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~  312 (368)
                      ++++.|+++++|..++..+. ..+.+|...|++  ++++++++++++.|.++++|.
T Consensus       404 ~TasyD~t~kiWs~~~~~~~-ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  404 VTASYDNTVKIWSTRTWSPL-KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEcccCcceeeecCCCcccc-hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999887655 788899999865  457999999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=267.96  Aligned_cols=287  Identities=21%  Similarity=0.348  Sum_probs=255.3

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      +-+|+..+...+.+|..+|+.+-|.|.  ++++++.|++|++||..+.  ...+++|...+..+.|+  |.+|++++.|=
T Consensus        93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen   93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc
Confidence            346777888889999999999999988  7888999999999998754  55789999999999998  89999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      .+++||+++......                               .+.+|...|.++.|-|.|.++++++.|.+|+.|+
T Consensus       173 ~~~LWd~~~~~~c~k-------------------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIK-------------------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE  221 (406)
T ss_pred             chhheeHHHHHHHHH-------------------------------HhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence            999999986422111                               2234899999999999999999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-------
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-------  254 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------  254 (368)
                      +.++-++.++.+|...|..++.+.|| ++++++.|.++++|-+.+.      .+...+..|+.+|.+++|.|.       
T Consensus       222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~  295 (406)
T KOG0295|consen  222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSIS  295 (406)
T ss_pred             cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchh
Confidence            99999999999999999999999999 9999999999999999765      356778889999999999773       


Q ss_pred             --------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325          255 --------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       255 --------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  324 (368)
                              ++++.+++.|++|++||+.++.++ ..+.+|...|.  +|+|.|+||+++.+|+++++||+.+.  +++..+
T Consensus       296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cmk~~  372 (406)
T KOG0295|consen  296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCMKTL  372 (406)
T ss_pred             hccCCCCCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eeeecc
Confidence                    258999999999999999998776 67889999884  55667999999999999999999887  889999


Q ss_pred             eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          325 TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       325 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..|..-|+++.|..+..            +++||+.|.++++|
T Consensus       373 ~ah~hfvt~lDfh~~~p------------~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  373 EAHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVW  403 (406)
T ss_pred             CCCcceeEEEecCCCCc------------eEEeccccceeeee
Confidence            99999999999999998            79999999999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-41  Score=249.42  Aligned_cols=262  Identities=21%  Similarity=0.386  Sum_probs=217.5

Q ss_pred             EEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      +|+++|.|.+||+|...++++  +++...+.|+.+...  +..|++++ ...||+||+++++..                
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~----------------   74 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPN----------------   74 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCC----------------
Confidence            899999999999999987765  566678889999987  45566655 569999999988642                


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI  210 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  210 (368)
                                    +...+.+|++.|+++.|..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+|+. .|
T Consensus        75 --------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   75 --------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             --------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence                          344566799999999999999999999999999999999976666665 67999999999998 99


Q ss_pred             EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-----cccceeeecc
Q 047325          211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-----LSHGGVLKGH  285 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~  285 (368)
                      ++|..+|.|++||+....-     ...........|.++...|+|.+++.+...|..++|++-+.     ..+...++.|
T Consensus       140 is~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH  214 (311)
T ss_pred             EeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence            9999999999999986532     11223344578999999999999999999999999998643     3344556777


Q ss_pred             ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325          286 KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       286 ~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~  363 (368)
                      ...+  .-++||+++|++++.|.+++||+.+.. .+....+.+|...+++.+||.||+            +|+||+.|+.
T Consensus       215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~------------YlvTassd~~  281 (311)
T KOG0315|consen  215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGE------------YLVTASSDHT  281 (311)
T ss_pred             cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCcc------------EEEecCCCCc
Confidence            7776  457899999999999999999998876 567778899999999999999999            5666666666


Q ss_pred             cccC
Q 047325          364 DDDV  367 (368)
Q Consensus       364 v~i~  367 (368)
                      +|+|
T Consensus       282 ~rlW  285 (311)
T KOG0315|consen  282 ARLW  285 (311)
T ss_pred             eeec
Confidence            6666

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-41  Score=249.15  Aligned_cols=283  Identities=22%  Similarity=0.314  Sum_probs=237.5

Q ss_pred             ceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc---ee---cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           35 GLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE---FC---GFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~---~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      ..+..+.+|+++|..+++++.   .||||+.|+.||+|+....   .+   .-.+|...|.+++|+  |++|++|+.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            346789999999999999866   8999999999999998731   11   124799999999997  999999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      +.||.-..++..                              ....+.||.++|.|++|+++|++||+|+.|..|-||.+
T Consensus        85 ~~Iw~k~~~efe------------------------------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   85 VVIWKKEDGEFE------------------------------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             EEEeecCCCcee------------------------------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            999987655421                              13456789999999999999999999999999999998


Q ss_pred             cC---CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325          184 SD---SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       184 ~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      ..   .++...++.|...|..+.|+|.. +|++++.|.+|++|+-...   ....+...+.+|...|.+++|+|.|..|+
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---ddW~c~~tl~g~~~TVW~~~F~~~G~rl~  211 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---DDWECVQTLDGHENTVWSLAFDNIGSRLV  211 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC---CCeeEEEEecCccceEEEEEecCCCceEE
Confidence            74   35788999999999999999987 9999999999999997642   45567889999999999999999999999


Q ss_pred             EecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC----ceeeeE-eeeccccCeeEE
Q 047325          260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA----IHTCLS-VLTGHTGPVKCL  334 (368)
Q Consensus       260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~-~~~~h~~~v~~l  334 (368)
                      +++.|++++||-....     ....|...++.+.++...|++++.|+.|++|.-...    ....+. .-..|...|+++
T Consensus       212 s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             EecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence            9999999999986632     334567778888888889999999999999976432    112222 335689999999


Q ss_pred             EEecC-CeeeecCCcceEEEEEeeCCcccccccC
Q 047325          335 AVEED-RDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       335 ~~~~~-~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|+|. ..            +|++|+.||.|++|
T Consensus       287 ~w~p~~~~------------~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  287 QWNPKVSN------------RLASGGDDGIVNFW  308 (312)
T ss_pred             EEcCCCCC------------ceeecCCCceEEEE
Confidence            99995 34            68999999999998

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-41  Score=260.95  Aligned_cols=284  Identities=20%  Similarity=0.346  Sum_probs=245.7

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      .+-++.+.+.+|.+.|.|++++|.  .|+||+.|++|+|||+.+.  ..++.+|...|..++++  ..||++++.|+.|+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            445667789999999999999854  9999999999999999865  45678999999999999  66999999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      .||++.++.+..                                +.||-+.|.|++.+|.-..|++|+.|.++++||+++
T Consensus       219 CwDLe~nkvIR~--------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  219 CWDLEYNKVIRH--------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EEechhhhhHHH--------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            999998875433                                445999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ...+..+.+|..+|..+.+.|-+ .+++|+.|++|++||++.+.      ....+..|...+.+++.+|....+++++.|
T Consensus       267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvral~lhP~e~~fASas~d  340 (460)
T KOG0285|consen  267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVRALCLHPKENLFASASPD  340 (460)
T ss_pred             cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceeeEEecCCchhhhhccCCc
Confidence            99999999999999999998866 99999999999999999873      467788899999999999999999999887


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCc-eeeeEeee-----ccccCeeEEEEe
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAI-HTCLSVLT-----GHTGPVKCLAVE  337 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~-----~h~~~v~~l~~~  337 (368)
                      . |+-|++..+..+.. +.+|..-+.+++.+ ..++++|+++|.+.+||.+++- .+..++..     ..+..|.+.+|.
T Consensus       341 n-ik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  341 N-IKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             c-ceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence            5 99999998877754 88999999999874 6799999999999999987651 11121111     123468999999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..|.            .|+||..|++|++|
T Consensus       419 ktg~------------rlit~eadKtIk~~  436 (460)
T KOG0285|consen  419 KTGS------------RLITGEADKTIKMY  436 (460)
T ss_pred             ccCc------------eEEeccCCcceEEE
Confidence            9998            79999999999988

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.2e-43  Score=279.75  Aligned_cols=285  Identities=15%  Similarity=0.269  Sum_probs=246.0

Q ss_pred             CCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKI  104 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  104 (368)
                      +...+.++.||+..|.++.|.+.   +|++++.|+.|+||++-   ..+++|.+|..+|.+++|+  |..+++++.|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            56778899999999999999763   99999999999999975   4578999999999999999  8899999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRI  183 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~  183 (368)
                      ++||++++++.....                                 ....++|+.|+|++ +.|++|+.|+.|+.||+
T Consensus       283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi  329 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI  329 (503)
T ss_pred             eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence            999999998765554                                 34567899999988 89999999999999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      ++++.++.+..|-+.|..+.|-++| .+++.+.|+.+++|+.+.+-.     .............++..+|+++++++-+
T Consensus       330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeehhhc
Confidence            9999999999999999999999999 999999999999999986522     2222233445577899999999999999


Q ss_pred             CCCcEEEEeCCCccc--cceeeeccceE----EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325          263 SDGLVNFWEREKQLS--HGGVLKGHKLA----VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV  336 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~--~~~~~~~~~~~----~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~  336 (368)
                      .|+.|.+|.+.....  ....+.+|...    -+.++|||++|++|+.||.+.+||..+.  +.+..+++|.+++..+.|
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccCCcceEEEEe
Confidence            999999999764322  22455566543    2678899999999999999999998876  778889999999999999


Q ss_pred             ecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          337 EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       337 ~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +|....           .++||+.||.|++|+
T Consensus       483 HP~e~S-----------kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVEPS-----------KVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCcc-----------eeEecccCceeEecC
Confidence            998764           799999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.6e-42  Score=269.70  Aligned_cols=273  Identities=23%  Similarity=0.291  Sum_probs=235.6

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      -+..|..+.|.|+  .|++|+..|...+|+...-  ...++.|..+|.++.|+  +.++++|+.+|.|++|+..-.....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            3456888888755  9999999999999997532  33567899999999998  8899999999999999987654322


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD  196 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  196 (368)
                      ....                                |...|++++|+|+...|++|+.||+|+|||....+....+.+|.
T Consensus       175 ~~ah--------------------------------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg  222 (464)
T KOG0284|consen  175 IQAH--------------------------------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG  222 (464)
T ss_pred             hhHh--------------------------------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC
Confidence            2221                                66999999999999999999999999999999999989999999


Q ss_pred             CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      -.|.+++|+|.. ++++|+.|..|++||.+++      .++..+..|+..|..+.|+|++++|++++.|..+++||+++.
T Consensus       223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m  296 (464)
T KOG0284|consen  223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM  296 (464)
T ss_pred             CCcceeccCCccceeEEccCCceeEeecCCCc------chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence            999999999987 9999999999999999987      468888999999999999999999999999999999999965


Q ss_pred             cccceeeeccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          276 LSHGGVLKGHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      +.+ ..+++|...+.++.  | ...+|.+|+.||.|..|.+.... .....-.+|...|++++|+|-|.           
T Consensus       297 kEl-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~AHd~~iwsl~~hPlGh-----------  363 (464)
T KOG0284|consen  297 KEL-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PLGEIPPAHDGEIWSLAYHPLGH-----------  363 (464)
T ss_pred             HHH-HHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-cccCCCcccccceeeeeccccce-----------
Confidence            554 67888999887774  4 57899999999999999987431 22233357999999999999999           


Q ss_pred             EEEeeCCcccccccC
Q 047325          353 WIVYSGSLDKSDDDV  367 (368)
Q Consensus       353 w~l~sg~~D~~v~i~  367 (368)
                       +|++|+.|+++|.|
T Consensus       364 -il~tgsnd~t~rfw  377 (464)
T KOG0284|consen  364 -ILATGSNDRTVRFW  377 (464)
T ss_pred             -eEeecCCCcceeee
Confidence             78899999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-42  Score=265.02  Aligned_cols=240  Identities=23%  Similarity=0.375  Sum_probs=203.9

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|.++|.++.|+  +.+|++|+.|.++|+||+.+..+..                                +..+
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------------------------------t~Kg  155 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------------------------------TCKG  155 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--------------------------------eecC
Confidence            34578999999999998  7899999999999999999876433                                3345


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE-EEeecCCCceEEEEeCCC-----C-eEEEEcCCCeEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL-ESVSAHDDAVNSVVSSSE-----G-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~-----~-~l~~~~~dg~i~i~d~~  225 (368)
                      |...|.|++|+||++.|++|+.||+|++||..+|+++ ..+.+|...|++++|.|-     . +|++++.||.++|||+.
T Consensus       156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK  235 (480)
T ss_pred             CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence            9999999999999999999999999999999998765 678999999999999763     2 89999999999999997


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC----------
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA----------  295 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------  295 (368)
                      .+      .++..+.+|..+|+|++|--+ .++++|+.|++|++|+...+... ..+.+|...|..++.+          
T Consensus       236 ~~------~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~-r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  236 LG------TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLC-RELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             Cc------eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHH-Hhhcccchheeeeeccchhhhhcccc
Confidence            65      468889999999999999754 58999999999999999887655 6778887777544322          


Q ss_pred             ---C-------------------------CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          296 ---G-------------------------KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       296 ---~-------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                         +                         +.|++|++|.++.+|+-... .+++..+.+|...|+.+.|+||++      
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-kkpi~rmtgHq~lVn~V~fSPd~r------  380 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-KKPITRMTGHQALVNHVSFSPDGR------  380 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-ccchhhhhchhhheeeEEECCCcc------
Confidence               3                         35999999999999976443 367888899999999999999999      


Q ss_pred             cceEEEEEeeCCcccccccC
Q 047325          348 SCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       348 ~~~~~w~l~sg~~D~~v~i~  367 (368)
                            +++++|.|+.||+|
T Consensus       381 ------~IASaSFDkSVkLW  394 (480)
T KOG0271|consen  381 ------YIASASFDKSVKLW  394 (480)
T ss_pred             ------EEEEeecccceeee
Confidence                  56667777777766

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.3e-41  Score=252.04  Aligned_cols=280  Identities=23%  Similarity=0.361  Sum_probs=237.2

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ..++..+.+|++.|+.+.|+|+  .||||+.|..|.+|++.   +....+++|.+.|..+.|.  ++.+++++.|.+++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            3455678999999999999876  99999999999999975   3456778999999999998  889999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  185 (368)
                      ||.++++.....+.                                |.+-|+.+.-+.-| .++.+++.|+++++||+++
T Consensus       117 wD~~tG~~~rk~k~--------------------------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen  117 WDAETGKRIRKHKG--------------------------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             Eecccceeeehhcc--------------------------------ccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            99999986655443                                88889988854433 4677888999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ...++++. ..-.++++.|...+ .+++|+-|+.|++||++.+.      ....+.+|...|+.+..+|+|.++.+-+.|
T Consensus       165 k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------~~~~lsGh~DtIt~lsls~~gs~llsnsMd  237 (338)
T KOG0265|consen  165 KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------GLYTLSGHADTITGLSLSRYGSFLLSNSMD  237 (338)
T ss_pred             cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc------ceEEeecccCceeeEEeccCCCcccccccc
Confidence            99888875 45678999999988 99999999999999998763      578889999999999999999999999999


Q ss_pred             CcEEEEeCCCc---cccceeeeccce------EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325          265 GLVNFWEREKQ---LSHGGVLKGHKL------AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA  335 (368)
Q Consensus       265 g~i~i~d~~~~---~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~  335 (368)
                      .++++||++..   +.....+.+|.-      --.+++|++..+.+|+.|..+++||....  ..+..+.+|.+.|++++
T Consensus       238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~gsvn~~~  315 (338)
T KOG0265|consen  238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHYGSVNEVD  315 (338)
T ss_pred             ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcceeEEEee
Confidence            99999998842   232344444432      22677889999999999999999987665  78899999999999999


Q ss_pred             EecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          336 VEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       336 ~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      |+|...            .+.+++.|++|.+
T Consensus       316 Fhp~e~------------iils~~sdk~i~l  334 (338)
T KOG0265|consen  316 FHPTEP------------IILSCSSDKTIYL  334 (338)
T ss_pred             ecCCCc------------EEEEeccCceeEe
Confidence            999999            6777777777653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-40  Score=262.88  Aligned_cols=274  Identities=22%  Similarity=0.310  Sum_probs=235.4

Q ss_pred             ccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc------ceeccc----------CCCCCeeEEEEe--CCEEEEE
Q 047325           40 LVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK------EFCGFK----------ASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~------~~~~~~----------~~~~~v~~~~~~--~~~l~s~   98 (368)
                      +..|+.+|.+.+|+|.   ++++|+.|-+.++|++..      ....++          ..+..|++++|+  |..|++|
T Consensus       174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG  253 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG  253 (524)
T ss_pred             eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence            3349999999999975   889999999999999764      111111          124679999999  9999999


Q ss_pred             eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF  178 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  178 (368)
                      +.||.+++|+.......                                 .+..|+++|.++.|+..|.+|++++.|+++
T Consensus       254 ~~~G~~riw~~~G~l~~---------------------------------tl~~HkgPI~slKWnk~G~yilS~~vD~tt  300 (524)
T KOG0273|consen  254 SEDGEARIWNKDGNLIS---------------------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTT  300 (524)
T ss_pred             ecCcEEEEEecCchhhh---------------------------------hhhccCCceEEEEEcCCCCEEEeccCCccE
Confidence            99999999998765321                                 222399999999999999999999999999


Q ss_pred             EEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      .+||..+++..+.+..|..+-..+.|-.+..+++.+.|+.|+++.+...      .+..++.+|.+.|.++.|.|.+.+|
T Consensus       301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~LL  374 (524)
T KOG0273|consen  301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGSLL  374 (524)
T ss_pred             EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCceE
Confidence            9999999999999999998878899998889999999999999999754      4678889999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-----------CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-----------AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      ++++.|++++||........ ..+..|...|+.+.+           .+..+++++.|++|++||+..+  .++..+..|
T Consensus       375 aS~SdD~TlkiWs~~~~~~~-~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH  451 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSV-HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKH  451 (524)
T ss_pred             EEecCCCeeEeeecCCCcch-hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccC
Confidence            99999999999998765444 567788887766653           2568999999999999999887  888999999


Q ss_pred             ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..+|.+++|+|+|+            ++++|+.||.|.+|
T Consensus       452 ~~pVysvafS~~g~------------ylAsGs~dg~V~iw  479 (524)
T KOG0273|consen  452 QEPVYSVAFSPNGR------------YLASGSLDGCVHIW  479 (524)
T ss_pred             CCceEEEEecCCCc------------EEEecCCCCeeEec
Confidence            99999999999999            67888888888877

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.1e-40  Score=239.61  Aligned_cols=271  Identities=18%  Similarity=0.369  Sum_probs=233.9

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----cceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      ...+....+++...+.|+.|...++  .||+|+. -.||+||+.    .++..+.+|+..|+++.|.  |+.+++|++||
T Consensus        27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg  105 (311)
T KOG0315|consen   27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG  105 (311)
T ss_pred             hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence            3456777888888888999998766  7776665 679999986    3678899999999999998  89999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      +++|||++.........                                 |..+|+++..+|+...|++|..+|.|++||
T Consensus       106 t~kIWdlR~~~~qR~~~---------------------------------~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen  106 TVKIWDLRSLSCQRNYQ---------------------------------HNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             eEEEEeccCcccchhcc---------------------------------CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            99999999855433332                                 789999999999999999999999999999


Q ss_pred             ccCCeEEEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          183 ISDSKCLESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       183 ~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      +....+...+- ....+|.++...|+| +++.+...|..++|++-.........++.++..|.+.+..+.++|++++|++
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat  232 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT  232 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence            99887766553 455789999999999 8999999999999999876666677788889999999999999999999999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      ++.|.+++||+.+........+.+|...+  ..|+.|++||++|+.|+.+++|++..+  +.+..+.+|..+..+++..
T Consensus       233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~--k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG--KEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC--ceeeecCCcccccEEEEee
Confidence            99999999999998766667788897776  677789999999999999999999887  7788899999998888764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.3e-42  Score=262.43  Aligned_cols=268  Identities=26%  Similarity=0.449  Sum_probs=228.2

Q ss_pred             CCcEEEEEecCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCC
Q 047325           44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAG  121 (368)
Q Consensus        44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  121 (368)
                      ...|+|+.++.+.+++|..|.+|+|||....  ...+.+|++.|.|+.|+...+++|+.|.+|++||++++++...    
T Consensus       197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t----  272 (499)
T KOG0281|consen  197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT----  272 (499)
T ss_pred             CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH----
Confidence            4669999999999999999999999998754  5678899999999999999999999999999999999986443    


Q ss_pred             ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCCCc
Q 047325          122 TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHDDA  198 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~  198 (368)
                                                  +.+|.+.|..+.|+.  .++++++.|.+|.+||+.+..   +...+.+|...
T Consensus       273 ----------------------------lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  273 ----------------------------LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             ----------------------------HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence                                        334999999999975  499999999999999998754   33567799999


Q ss_pred             eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325          199 VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       199 v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      |+.+.|... ++++++.|.+|++|++.+.      ..++.+.+|+..|.|+.+  .++++++|++|.+|++||++.+..+
T Consensus       323 VNvVdfd~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  323 VNVVDFDDK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             eeeeccccc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence            999999755 9999999999999999876      468889999999999988  5899999999999999999998777


Q ss_pred             ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee-------eeEeeeccccCeeEEEEecCCeeeec-CCcce
Q 047325          279 GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT-------CLSVLTGHTGPVKCLAVEEDRDSSSS-TSSCA  350 (368)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~~-~~~~~  350 (368)
                       ..+.+|..-+.|+.+|.+.+++|+.||+|++||+......       ++..+..|++.|..+.|..- +.+++ -+..+
T Consensus       394 -RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtI  471 (499)
T KOG0281|consen  394 -RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI  471 (499)
T ss_pred             -HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeE
Confidence             7889999999999999999999999999999999765333       56677789999999999643 22222 23335


Q ss_pred             EEEEEe
Q 047325          351 QRWIVY  356 (368)
Q Consensus       351 ~~w~l~  356 (368)
                      -+|.+.
T Consensus       472 LiWdFl  477 (499)
T KOG0281|consen  472 LIWDFL  477 (499)
T ss_pred             EEEEcC
Confidence            555543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-38  Score=253.82  Aligned_cols=319  Identities=17%  Similarity=0.257  Sum_probs=249.7

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceeccc---CCCCCeeEEEEe--CCEEEEEeCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFK---ASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~---~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      =|+.++..++..|..-|.|+.|+|+  +++|++.||+|.+||-.+  .+..+.   +|.+.|.+++|+  +..+++++.|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            4677888899999999999999876  999999999999999653  344444   899999999998  7799999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCcee-----------Ee-cccceeeeeecCCCEeEEEEcCCCCEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYI-----------EV-RRHRTALWIRHSDAVSCMSLDQDCGLL  169 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l  169 (368)
                      .+++|||+.+.+.......... ........-.....++           .. ......+..||...|+++..+|++++|
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence            9999999999876655544433 1111111111111111           11 122456778999999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCeEE-----------E--------------------Ee--------------------------
Q 047325          170 YTASWDRTFKVWRISDSKCL-----------E--------------------SV--------------------------  192 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~-----------~--------------------~~--------------------------  192 (368)
                      ++|+.||.|.-||..++..-           .                    .+                          
T Consensus       336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence            99999999999998664210           0                    00                          


Q ss_pred             ----------------ecC--------CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          193 ----------------SAH--------DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       193 ----------------~~~--------~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                                      +.+        .-...+++++|++ .+++|+.|+.|++|.+.....    ........|.++|+
T Consensus       416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l----~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL----KEEAKLLEHRAAIT  491 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc----cceeeeecccCCce
Confidence                            000        0123467788888 999999999999999986532    23445678999999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +++++||+.+|++|...+.+.+||..+.+.......-|...|.|++  |+..++|+|+-|-.|.||+++.+... +....
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~ikn  570 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIKN  570 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh-eEecc
Confidence            9999999999999999999999999988776666667888886655  67899999999999999999876434 66677


Q ss_pred             ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +|...|+.+.|-.+..             +++.+.|..||+||
T Consensus       571 AH~~gVn~v~wlde~t-------------vvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  571 AHLGGVNSVAWLDEST-------------VVSSGQDANIKVWN  600 (603)
T ss_pred             ccccCceeEEEecCce-------------EEeccCcceeEEec
Confidence            8999999999988875             78889999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-39  Score=239.01  Aligned_cols=253  Identities=21%  Similarity=0.393  Sum_probs=208.2

Q ss_pred             CccccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEE
Q 047325           23 GWSQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIF   96 (368)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~   96 (368)
                      .|.....+.+-+..++.+.||+..|..+..+  +++.++++.|+++|+||+..  ..+.|.+|...|.+++|+  +..++
T Consensus        42 ~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv  121 (315)
T KOG0279|consen   42 VWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV  121 (315)
T ss_pred             EEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee
Confidence            3777777788889999999999999999876  55999999999999999985  466789999999999998  67999


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASW  174 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  174 (368)
                      +|+.|.+|++|+............                               ++.+.|.|+.|+|+  ..+|++++.
T Consensus       122 SGSrDkTiklwnt~g~ck~t~~~~-------------------------------~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen  122 SGSRDKTIKLWNTLGVCKYTIHED-------------------------------SHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             cCCCcceeeeeeecccEEEEEecC-------------------------------CCcCcEEEEEEcCCCCCcEEEEccC
Confidence            999999999999876543222211                               14789999999997  789999999


Q ss_pred             CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      |++|++||+++.+....+.+|.+.++.++++||| ++++|+.||.+.+||++....      + ....+...|.+++|+|
T Consensus       171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~------l-ysl~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN------L-YSLEAFDIVNSLCFSP  243 (315)
T ss_pred             CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce------e-EeccCCCeEeeEEecC
Confidence            9999999999999999999999999999999999 999999999999999987632      2 3346778899999999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCccccceeee---cc-----ceE--EEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GH-----KLA--VLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-----~~~--~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +...|+.+. +..|+|||++++........   +.     ...  .++++.||..|++|-.|+.|++|.+.
T Consensus       244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  244 NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            876666654 45599999997654422111   11     112  24555689999999999999999764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.4e-40  Score=276.55  Aligned_cols=266  Identities=24%  Similarity=0.364  Sum_probs=214.9

Q ss_pred             CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      .-...++|..|+  +..||.|..|..|++|.+...+.............. ...........-.........+.||.++|
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCce
Confidence            334567888887  568888889999999999865322211111111110 00000011111122233445688999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      ....|+|+.++|++++.|+++++|.+.+..++..+++|..+|.++.|+|.| ++++++.|++.++|.....      .+.
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------~Pl  528 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------KPL  528 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC------Cch
Confidence            999999999999999999999999999999999999999999999999999 9999999999999998764      468


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +.+.+|-+.|.|+.|+|+.+++++|+.|.+|++||..++... +.+.+|..+|  ++++|+|++|++|+.||.|.+||+.
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            888999999999999999999999999999999999998775 7788999888  5567899999999999999999998


Q ss_pred             CCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++  ..+..+.+|.+.|.+|.|+.+|.            .|++||.|.+|++|
T Consensus       608 ~~--~~v~~l~~Ht~ti~SlsFS~dg~------------vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  608 NG--SLVKQLKGHTGTIYSLSFSRDGN------------VLASGGADNSVRLW  646 (707)
T ss_pred             CC--cchhhhhcccCceeEEEEecCCC------------EEEecCCCCeEEEE
Confidence            87  78889999999999999999999            56666666666665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-39  Score=253.66  Aligned_cols=281  Identities=21%  Similarity=0.314  Sum_probs=234.5

Q ss_pred             CceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCC-----cceecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325           34 NGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNL-----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKI  104 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  104 (368)
                      .+..+.+..|++.|+-+.|++  .+|||++.|.+..+|++.     +...++.+|..+|..+.|+  .++|++|+.|..+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            344567889999999999974  499999999999999864     2255788999999999999  7799999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      .+||..++........+                               +...+.+.+|.||+..+++|+.|+.|..||+.
T Consensus       294 ~lwDv~tgd~~~~y~~~-------------------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSG-------------------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeccCCcchhhhhcccC-------------------------------cCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            99999999865544432                               56789999999999999999999999999985


Q ss_pred             CCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          185 DSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       185 ~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                       |..+...++- ...|.+++..+|| ++++.+.|..|++++....       ....+...+.+|++++.+.+++++++.-
T Consensus       343 -gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-------~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  343 -GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-------VDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             -cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-------hhhccccccCceeEEEEcCCCcEEEEEc
Confidence             4555555543 3569999999999 8888889999999998754       2233455677899999999999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEE----EEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAV----LCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      .+..+++||++....+ ..+.+|...-    .||.. +..++++|++|+.|+||+..++  +++..+.||...|++++|+
T Consensus       415 ~~qei~LWDl~e~~lv-~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--kll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLV-RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--KLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             ccCeeEEeecchhhHH-HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--ceeEeecCCcceeeEEecC
Confidence            9999999999965544 5556665443    33333 4689999999999999988776  8899999999999999999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |....           .+|+||+||+||||
T Consensus       492 P~~p~-----------m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  492 PADPE-----------MFASASDDGTIRIW  510 (519)
T ss_pred             CCCHH-----------HhhccCCCCeEEEe
Confidence            98874           78999999999999

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.3e-39  Score=269.86  Aligned_cols=267  Identities=22%  Similarity=0.332  Sum_probs=227.3

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc---------------------------------ceecccC
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK---------------------------------EFCGFKA   80 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~---------------------------------~~~~~~~   80 (368)
                      +..++..-...++|..|+++  +||.|-.|..|++|.+..                                 ....+.+
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            34445445566899999866  999999999999996431                                 1223678


Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      |.++|....|+  .++|++++.|+++|+|.+.+.....                                .+.||..+|.
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------------------------~y~GH~~PVw  497 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------------------------IYKGHLAPVW  497 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------------------------EecCCCccee
Confidence            99999999998  7799999999999999999876433                                3446999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      ++.|+|.|-+||+++.|++-++|.....++++.+.+|...|.|+.|+|+. ++++|+.|.++++||+.++.      .++
T Consensus       498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------~VR  571 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------SVR  571 (707)
T ss_pred             eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc------EEE
Confidence            99999999999999999999999999999999999999999999999999 99999999999999998874      578


Q ss_pred             eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCC
Q 047325          238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++... ..+.+|...+.+  |+.+|..|++|+.|++|++||+..
T Consensus       572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            88999999999999999999999999999999999987666 566778887755  556899999999999999999854


Q ss_pred             Ccee----------------------eeEeeeccccCeeEEEEecCCe
Q 047325          316 AIHT----------------------CLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       316 ~~~~----------------------~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ....                      .+..+..-..+|..+.|.....
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl  698 (707)
T KOG0263|consen  651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL  698 (707)
T ss_pred             hcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence            3222                      4555556667888888877665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-37  Score=249.20  Aligned_cols=342  Identities=19%  Similarity=0.280  Sum_probs=247.1

Q ss_pred             ccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEE
Q 047325           26 QFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s   97 (368)
                      .+..++.+......+..|..+++-..|+|.  ++|+|...|+|||||....    ..+++.-.++|..++|+  +.+|++
T Consensus        41 v~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a  120 (603)
T KOG0318|consen   41 VIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA  120 (603)
T ss_pred             EEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence            344556666667778899888888878765  9999999999999997652    23566778899999998  667776


Q ss_pred             EeCC----CeEEEEeecCCCcccccc-----CCccccceeeeeccCCCCceeEecccce----eeeeecCCCEeEEEEcC
Q 047325           98 GHQD----GKIRVWKISPKNQSVHKR-----AGTLPTLKDIFKSSIKPSNYIEVRRHRT----ALWIRHSDAVSCMSLDQ  164 (368)
Q Consensus        98 ~~~d----g~i~vw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~  164 (368)
                      .++.    |.+.+||-.+..-...-.     ...+.....+-.......+.+.....+.    ..+..|..-|.|+.|+|
T Consensus       121 vGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP  200 (603)
T KOG0318|consen  121 VGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP  200 (603)
T ss_pred             EecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC
Confidence            6542    346667654321111100     0011111111111122222222222222    23456999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEee---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC----------
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVS---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG----------  230 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----------  230 (368)
                      ||.++++++.||.|.+||-.+++.+..+.   +|.+.|.++.|+||+ ++++++.|.+++|||+......          
T Consensus       201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            99999999999999999999999999998   899999999999999 9999999999999998765321          


Q ss_pred             ---------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---
Q 047325          231 ---------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---  280 (368)
Q Consensus       231 ---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---  280 (368)
                                                 ....+...+.+|...|+++..+|++++|++|+.||.|.-|+..++.....   
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~  360 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK  360 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence                                       11123456778999999999999999999999999999999653321100   


Q ss_pred             ---------------------------------------------------------------------eee--------
Q 047325          281 ---------------------------------------------------------------------VLK--------  283 (368)
Q Consensus       281 ---------------------------------------------------------------------~~~--------  283 (368)
                                                                                           .+.        
T Consensus       361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~  440 (603)
T KOG0318|consen  361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI  440 (603)
T ss_pred             cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee
Confidence                                                                                 000        


Q ss_pred             --ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE---------
Q 047325          284 --GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR---------  352 (368)
Q Consensus       284 --~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~---------  352 (368)
                        +-.....+++|++..++.|+.||.|+||.+.............|.++|++++++||+.++|+++...++         
T Consensus       441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence              001122456678999999999999999999876545555667899999999999999999999854332         


Q ss_pred             -----E-----------------EEeeCCcccccccC
Q 047325          353 -----W-----------------IVYSGSLDKSDDDV  367 (368)
Q Consensus       353 -----w-----------------~l~sg~~D~~v~i~  367 (368)
                           |                 .++|||.|-+|.||
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence                 1                 37888888888877

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.6e-38  Score=241.80  Aligned_cols=286  Identities=18%  Similarity=0.256  Sum_probs=237.7

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ...+.+|..|++.|++++.+|+  +++||+.|..-.+|+..++  ...+.+|...|+++.|+  |.+|+||+.+|.|+||
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            5667889999999999999876  9999999999999998754  56788999999999998  8899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      +..++........                                .-+.+.-+.|+|.+..|++|+.||.+-.|.+.++.
T Consensus       134 ~~stg~~~~~~~~--------------------------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQ--------------------------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             EcccCceEEEeec--------------------------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            9998875443321                                34567789999999999999999999999999988


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc--------c-----------------------
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS--------L-----------------------  235 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------~-----------------------  235 (368)
                      ..+.+.+|..++++=.|.|+| .++++..||+|++||+.+........        +                       
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            899999999999999999999 99999999999999998764311100        0                       


Q ss_pred             ------ceeec--------cccccEEEEE---EcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCC-C
Q 047325          236 ------AQTLL--------KQECAVTALV---VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAG-K  297 (368)
Q Consensus       236 ------~~~~~--------~~~~~i~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~  297 (368)
                            +....        .++..+.++.   ++..-.+.|+|+.||+|.|||+.....  +....|...|+.+.+.+ .
T Consensus       262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~  339 (399)
T KOG0296|consen  262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTD  339 (399)
T ss_pred             cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcc
Confidence                  00000        1122233333   333446789999999999999987543  45667888899988876 8


Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|++++.||.|+.||.+++  +++.++.+|..+|.+++++|+++            +++|+|.|++.+||
T Consensus       340 ~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~~Il~f~ls~~~~------------~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  340 YLLTACANGKVRQWDARTG--QLKFTYTGHQMGILDFALSPQKR------------LVVTVSDDNTALVF  395 (399)
T ss_pred             hheeeccCceEEeeecccc--ceEEEEecCchheeEEEEcCCCc------------EEEEecCCCeEEEE
Confidence            9999999999999998887  88999999999999999999999            78999999998887

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-38  Score=228.12  Aligned_cols=267  Identities=19%  Similarity=0.310  Sum_probs=226.9

Q ss_pred             eeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325           37 IGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~  110 (368)
                      .+.+..|+++|.++.|+  |++.++++.|.+||+||+.+.  +.++.+|...|..++.+  +..+++|+.|..+.+||++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            45688999999999997  569999999999999998754  67899999999988876  7799999999999999999


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC--CeE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD--SKC  188 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~  188 (368)
                      +++....                                |.+|...|+.++|+.+...+++|+.|..+++||.++  .++
T Consensus        90 TGkv~Rr--------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP  137 (307)
T KOG0316|consen   90 TGKVDRR--------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP  137 (307)
T ss_pred             cCeeeee--------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence            9985443                                445999999999999999999999999999999875  568


Q ss_pred             EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          189 LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ++.+......|.++..... .+++|+.||+++.||+|.+..      .  ......+|++++|+++++..+.++.|++++
T Consensus       138 iQildea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l------~--sDy~g~pit~vs~s~d~nc~La~~l~stlr  208 (307)
T KOG0316|consen  138 IQILDEAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTL------S--SDYFGHPITSVSFSKDGNCSLASSLDSTLR  208 (307)
T ss_pred             cchhhhhcCceeEEEeccc-EEEeeccCCcEEEEEeeccee------e--hhhcCCcceeEEecCCCCEEEEeeccceee
Confidence            8999888889999987643 799999999999999997732      2  233456799999999999999999999999


Q ss_pred             EEeCCCccccceeeeccceEE----EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-eeEEEEecCCeee
Q 047325          269 FWEREKQLSHGGVLKGHKLAV----LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-VKCLAVEEDRDSS  343 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~  343 (368)
                      +.|-++++.+ ..+.+|...-    .++......+++|++||.|++||+...  ..+..+..+... |++++++|...-+
T Consensus       209 LlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~~~v~v~dl~~hp~~~~f  285 (307)
T KOG0316|consen  209 LLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVVSTVIVTDLSCHPTMDDF  285 (307)
T ss_pred             ecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccCCceeEEeeecccCccce
Confidence            9999998777 5677887655    344446779999999999999999776  667777777777 8999999988754


Q ss_pred             ecCC
Q 047325          344 SSTS  347 (368)
Q Consensus       344 ~~~~  347 (368)
                      .++.
T Consensus       286 ~~A~  289 (307)
T KOG0316|consen  286 ITAT  289 (307)
T ss_pred             eEec
Confidence            4443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.9e-38  Score=249.69  Aligned_cols=267  Identities=21%  Similarity=0.309  Sum_probs=226.8

Q ss_pred             CcEEEEEec--CCEEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           45 GHIYSLAAS--KDLLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        45 ~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      ..|++|+|+  |++||+|+.||.+|+|+... .+..+..|.++|.++.|+  |+||++++.||++.+||..++.......
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            459999998  67999999999999999874 567889999999999999  8899999999999999998887544433


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV  199 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  199 (368)
                      .                                |..+-..+.|-.+ ..|++++.|+.|+++.+....++.++.+|.++|
T Consensus       316 ~--------------------------------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V  362 (524)
T KOG0273|consen  316 F--------------------------------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV  362 (524)
T ss_pred             e--------------------------------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence            3                                6666677888654 579999999999999999999999999999999


Q ss_pred             EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---------CEEEEecCCCcEEE
Q 047325          200 NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---------SIVYCGSSDGLVNF  269 (368)
Q Consensus       200 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i  269 (368)
                      .++.|.|.+ +|++++.|++++||.....      .....+..|...|..+.|+|.+         ..+++++.|++|++
T Consensus       363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  363 NALKWNPTGSLLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             EEEEECCCCceEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence            999999999 9999999999999998655      3567788999999999999954         47999999999999


Q ss_pred             EeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ||...+.++ ..+..|..+|+++  +|+++++++|+.||.|++|+..++  +..+.+. -.+.|..++|+.+|.      
T Consensus       437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~--~l~~s~~-~~~~Ifel~Wn~~G~------  506 (524)
T KOG0273|consen  437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG--KLVKSYQ-GTGGIFELCWNAAGD------  506 (524)
T ss_pred             EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch--heeEeec-CCCeEEEEEEcCCCC------
Confidence            999998776 5677788888655  567999999999999999987776  6666665 456699999999998      


Q ss_pred             cceEEEEEeeCCccccccc
Q 047325          348 SCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       348 ~~~~~w~l~sg~~D~~v~i  366 (368)
                            .|..+-.|+.+++
T Consensus       507 ------kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  507 ------KLGACASDGSVCV  519 (524)
T ss_pred             ------EEEEEecCCCceE
Confidence                  4555555555543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5e-37  Score=253.41  Aligned_cols=279  Identities=31%  Similarity=0.491  Sum_probs=233.5

Q ss_pred             eeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325           37 IGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~  110 (368)
                      +.++.+|.++|.++++++  ++|++++.||.|++|+...  ....+..|...+..+.|.  ++++++++.||.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            456789999999999986  5999999999999999874  355677888999899988  5689999999999999998


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE  190 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (368)
                      +++...                                .+..|...+.++.|+++++++++++.|+.|.+||+.+++...
T Consensus        82 ~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          82 TGECVR--------------------------------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             cccceE--------------------------------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence            753222                                222377899999999998888888889999999999999999


Q ss_pred             EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          191 SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       191 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                      .+..|...+.++.++|++ ++++++.|+.|++||++...      ....+..+...+.++.|+|+++.+++++.++.|++
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence            999899999999999988 77777779999999998542      34555677889999999999999999999999999


Q ss_pred             EeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ||++..... ..+..|...+.+  +++++.++++++.||.|++|++...  .....+..|...|.+++|+|++.      
T Consensus       204 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~------  274 (289)
T cd00200         204 WDLSTGKCL-GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGK------  274 (289)
T ss_pred             EECCCCcee-cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECCCCC------
Confidence            999875544 344456655644  4456788888888999999998865  56677778999999999999988      


Q ss_pred             cceEEEEEeeCCcccccccCC
Q 047325          348 SCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       348 ~~~~~w~l~sg~~D~~v~i~h  368 (368)
                            .+++++.|+.|++|.
T Consensus       275 ------~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 ------RLASGSADGTIRIWD  289 (289)
T ss_pred             ------EEEEecCCCeEEecC
Confidence                  788999999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.1e-37  Score=267.19  Aligned_cols=283  Identities=26%  Similarity=0.434  Sum_probs=234.1

Q ss_pred             ceeeeccCc-CCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           35 GLIGSLVRE-EGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        35 ~~~~~~~~h-~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      .+...+.+| ...|.++.|+++  .+++++.|+.+++|+...    ....+.+|...|.+++|+  +.++++++.|++|+
T Consensus       149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir  228 (456)
T KOG0266|consen  149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR  228 (456)
T ss_pred             eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence            334555555 678999998744  999999999999999842    344557899999999998  77999999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||+.....                               ...++.+|...|++++|+|+++++++|+.|++|++||+++
T Consensus       229 iwd~~~~~~-------------------------------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  229 IWDLKDDGR-------------------------------NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             EeeccCCCe-------------------------------EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            999944321                               2334556999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEEEec
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~  262 (368)
                      ++++..+.+|...|.+++|++++ +|++++.|+.|++||+..+...    +...+..+..  ++++++|+|++.+++++.
T Consensus       278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            99999999999999999999999 9999999999999999876421    2334444443  599999999999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEEEE-----EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEE
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCL-----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAV  336 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~  336 (368)
                      .|+.+++||++..... ....+|...+.++     .+.+.++++|+.|+.|++|++.+.  ..+..+.+| ...+..+++
T Consensus       354 ~d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~--~~~~~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG--GILQRLEGHSKAAVSDLSS  430 (456)
T ss_pred             CCCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--chhhhhcCCCCCceecccc
Confidence            9999999999987665 4555565543333     357999999999999999999875  777888999 889999999


Q ss_pred             ecCCeeeecCCcceEEEEEeeCC--cccccccC
Q 047325          337 EEDRDSSSSTSSCAQRWIVYSGS--LDKSDDDV  367 (368)
Q Consensus       337 ~~~~~~~~~~~~~~~~w~l~sg~--~D~~v~i~  367 (368)
                      +|...            ++++++  .|+.+++|
T Consensus       431 ~~~~~------------~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  431 HPTEN------------LIASSSFEGDGLIRLW  451 (456)
T ss_pred             CCCcC------------eeeecCcCCCceEEEe
Confidence            99999            555555  67777776

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-38  Score=264.60  Aligned_cols=291  Identities=23%  Similarity=0.314  Sum_probs=248.0

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee-cccCCCCCeeEEE-Ee-CCEEEEEeCCC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIV-IS-GEKIFTGHQDG  102 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~-~~-~~~l~s~~~dg  102 (368)
                      -+....++.+.+.|..+.|.++.|-|   ++||.++..+.+|+++..+..+ .+.+|...|.++. ++ |..|+||+.|.
T Consensus       308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~  387 (775)
T KOG0319|consen  308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK  387 (775)
T ss_pred             EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc
Confidence            34566778888999999999999976   4999999999999998876544 5789999999999 44 77999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVW  181 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw  181 (368)
                      ++++|.++++......                            .....+|.+.|.+++++..+ .+|++++.|+++++|
T Consensus       388 svilWr~~~~~~~~~~----------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  388 SVILWRLNNNCSKSLC----------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             eEEEEEecCCcchhhh----------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            9999999554322111                            12234599999999997744 589999999999999


Q ss_pred             EccCCeE-----EE----EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325          182 RISDSKC-----LE----SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV  251 (368)
Q Consensus       182 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  251 (368)
                      ++...+.     ..    ....|+..|+|++.+|+. ++++|+.|.+.++|++.+.      .....+.+|...+.++.|
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------eEEEEeeCCccceEEEEe
Confidence            9976321     11    234699999999999999 9999999999999999854      467889999999999999


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG  329 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~  329 (368)
                      +|..+.+++++.|++|+||.+.+..+. ..+.+|...|...++  ++..|++++.||.|++|++.+.  .++.++.+|.+
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~--eC~~tlD~H~D  590 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN--ECEMTLDAHND  590 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch--hhhhhhhhccc
Confidence            999999999999999999999997666 788999999976665  8999999999999999999887  89999999999


Q ss_pred             CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          330 PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       330 ~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      .|++++.+|...            .++||+.||.|-+||
T Consensus       591 rvWaL~~~~~~~------------~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  591 RVWALSVSPLLD------------MFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeEEEeecCccc------------eeEecCCCeEEEEee
Confidence            999999999998            677888888888875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.3e-38  Score=242.72  Aligned_cols=277  Identities=24%  Similarity=0.371  Sum_probs=233.6

Q ss_pred             CcCCcEEEEEecCCEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--C---CEEEEEeCCCeEEEEeecCCCcc
Q 047325           42 REEGHIYSLAASKDLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--G---EKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        42 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~---~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      -|.+-|.++.-.++.++||+.||.+++||.. +....+.+|.++|.++++-  +   ..+++++.|.++++|.++.++..
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            4778888888888899999999999999987 4567889999999998885  3   35999999999999999887654


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC----------
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD----------  185 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------  185 (368)
                      .....                            .-.||...|-++...+++..+++|+.|..|.+|+..+          
T Consensus       183 ~~~~~----------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  183 VKALK----------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             hhHHh----------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            33221                            1126999999999999999999999999999999321          


Q ss_pred             ---------------CeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325          186 ---------------SKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       186 ---------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  250 (368)
                                     +.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+..++.      ... ......+.++.
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~------~~~-~~~~ksl~~i~  307 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL------KST-LTTNKSLNCIS  307 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc------eee-eecCcceeEee
Confidence                           23677888999999999999977999999999999999988743      222 23456789999


Q ss_pred             EcCCCCEEEEecCCCcEEEEeCCCc--cccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          251 VSSSRSIVYCGSSDGLVNFWEREKQ--LSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       251 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      ++|..++|++|+.|..+++||.+++  ......+.+|...|.++.+   +...|++|+.|+++++||++.. ..++..+.
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~  386 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIA  386 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeec
Confidence            9999999999999999999999864  4555678899999866665   4668999999999999999886 24789999


Q ss_pred             ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|...|.++.|+..+             .+++||.|.+|||+
T Consensus       387 ~h~DKvl~vdW~~~~-------------~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  387 GHNDKVLSVDWNEGG-------------LIVSGGADNKLRIF  415 (423)
T ss_pred             cCCceEEEEeccCCc-------------eEEeccCcceEEEe
Confidence            999999999998765             48899999999987

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-38  Score=231.27  Aligned_cols=279  Identities=17%  Similarity=0.259  Sum_probs=232.6

Q ss_pred             ccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325           40 LVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        40 ~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      ++||+.+++.+.|+  |++|.+++.|.+..+|-..  +.+-++.+|.+.|.++..+  ...+++|+.|.++++||+++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            78999999999997  6799999999999999653  5577899999999999988  7899999999999999999998


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEcc----
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRIS----  184 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~----  184 (368)
                      +.....                                 ...+|..+.|++++++++.+..     .+.|.++|++    
T Consensus        86 ~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   86 QLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             EEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence            655444                                 4578999999999998887753     4689999998    


Q ss_pred             ---CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          185 ---DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       185 ---~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                         +.++...+..+...++.+-|.|-+ .|++|..||.|.+||.+++..     .+.....|...|+.++++|+..++++
T Consensus       133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-----~v~s~~~h~~~Ind~q~s~d~T~FiT  207 (327)
T KOG0643|consen  133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-----LVDSDEEHSSKINDLQFSRDRTYFIT  207 (327)
T ss_pred             hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-----eeechhhhccccccccccCCcceEEe
Confidence               456788888899999999999999 999999999999999997643     45566778889999999999999999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc------------eeeeEeeeccc
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI------------HTCLSVLTGHT  328 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~  328 (368)
                      ++.|.+-++||.++-..++......+....+++|....++.|+.....-|=-.....            .+.+..+++|-
T Consensus       208 ~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF  287 (327)
T KOG0643|consen  208 GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF  287 (327)
T ss_pred             cccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence            999999999999988777666666677778888976666666544333222211111            24466778999


Q ss_pred             cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          329 GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       329 ~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +||++++|+|+|.            ..++|++||.||+-|
T Consensus       288 GPINsvAfhPdGk------------sYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  288 GPINSVAFHPDGK------------SYSSGGEDGYVRLHH  315 (327)
T ss_pred             cCcceeEECCCCc------------ccccCCCCceEEEEE
Confidence            9999999999999            788999999999865

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=260.12  Aligned_cols=325  Identities=21%  Similarity=0.332  Sum_probs=247.5

Q ss_pred             ccccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEE
Q 047325           28 EENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        28 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~   98 (368)
                      ..++..+...+.|+||.+.|.++.|+|+    .|++|..|+++++||+...   +.....|.+.|+++.+.  +..++++
T Consensus       131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEe
Confidence            4556778889999999999999999877    7899999999999998732   45678899999999987  6678888


Q ss_pred             eCCCeEEEEeecCCCccc----------------------------------------------cccCCccccceee---
Q 047325           99 HQDGKIRVWKISPKNQSV----------------------------------------------HKRAGTLPTLKDI---  129 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~---  129 (368)
                      ++|..+.+||+.+-+...                                              .......+.....   
T Consensus       211 ~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~  290 (775)
T KOG0319|consen  211 GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAI  290 (775)
T ss_pred             ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceec
Confidence            888888888874322111                                              0000000000000   


Q ss_pred             ---------------eec-----------------------------------cCCCCceeEecccceeeeeecCCCEeE
Q 047325          130 ---------------FKS-----------------------------------SIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus       130 ---------------~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                                     +..                                   ......++.........+.||.+.|.+
T Consensus       291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlS  370 (775)
T KOG0319|consen  291 ESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLS  370 (775)
T ss_pred             cccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheee
Confidence                           000                                   000000112223334567899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-
Q 047325          160 MSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK-  232 (368)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-  232 (368)
                      +....+|.+|++|+.|.++++|.++.+    .++....+|...|.+++++..+  .|++++.|+++++|++........ 
T Consensus       371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~  450 (775)
T KOG0319|consen  371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP  450 (775)
T ss_pred             eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence            997777889999999999999987443    3456677899999999998777  999999999999999986322111 


Q ss_pred             --cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeE
Q 047325          233 --HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTI  308 (368)
Q Consensus       233 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i  308 (368)
                        .........|...|++++++|+.+++++|+.|.+.++|+++. ......+.+|...+.++++  ..+.++++|.|++|
T Consensus       451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv  529 (775)
T KOG0319|consen  451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV  529 (775)
T ss_pred             ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence              111224456889999999999999999999999999999995 4555889999988866654  67899999999999


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +||.+.+.  .+++++.||...|..+.|-.++.            .|+|++.||-+|+|
T Consensus       530 KIW~is~f--SClkT~eGH~~aVlra~F~~~~~------------qliS~~adGliKlW  574 (775)
T KOG0319|consen  530 KIWSISTF--SCLKTFEGHTSAVLRASFIRNGK------------QLISAGADGLIKLW  574 (775)
T ss_pred             EEEEeccc--eeeeeecCccceeEeeeeeeCCc------------EEEeccCCCcEEEE
Confidence            99999887  89999999999999999999999            56677777777766

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=253.41  Aligned_cols=318  Identities=23%  Similarity=0.358  Sum_probs=243.6

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--c--eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--E--FCGFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      .+++..+.+++.+|.+.|.++.|+.+  +|++||.|-++|+|.+..  .  ...+.+|...|.+..|.  ...+++.+.|
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd  210 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD  210 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence            56777888999999999999999865  999999999999998763  2  45688999999999997  5679999999


Q ss_pred             CeEEEEeecCCCcccccc--------------CCccccc----------------eeeeeccCCCCceeEecccceeee-
Q 047325          102 GKIRVWKISPKNQSVHKR--------------AGTLPTL----------------KDIFKSSIKPSNYIEVRRHRTALW-  150 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~--------------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~-  150 (368)
                      |.+.+|............              .+.....                ..+.....++...+.........+ 
T Consensus       211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~  290 (893)
T KOG0291|consen  211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG  290 (893)
T ss_pred             ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence            999999887331111110              0000000                001111111111111110000000 


Q ss_pred             -e-------ec-----CCCEeEEEEcCCCCEEEEEeCC-CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC
Q 047325          151 -I-------RH-----SDAVSCMSLDQDCGLLYTASWD-RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA  215 (368)
Q Consensus       151 -~-------~~-----~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  215 (368)
                       .       -|     ..+|..+.|+..|..|+.|+.. |.+.+|+..+..-+...++|...+++++++||| ++++|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence             0       02     2456777888888888888753 688999988888888889999999999999999 9999999


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--  293 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--  293 (368)
                      ||.|++||.+.+      .+..++..|...|+.+.|+..++.+++.+.||+|+.||+...........+.+..-.|++  
T Consensus       371 DgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  371 DGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             CCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            999999999876      578899999999999999999999999999999999999876666444444444444555  


Q ss_pred             eCCCEEEEeeCCCe-EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          294 AAGKLVFSGSADKT-ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       294 ~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |.|.++++|+.|.- |.+|++.++  +.+-.+.||++||.+++|+|++.            .|+|||.|++||+|
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~qTG--qllDiLsGHEgPVs~l~f~~~~~------------~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSVQTG--QLLDILSGHEGPVSGLSFSPDGS------------LLASGSWDKTVRIW  505 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEeecC--eeeehhcCCCCcceeeEEccccC------------eEEeccccceEEEE
Confidence            55999999998875 999999887  88889999999999999999999            78888888888888

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.2e-37  Score=230.74  Aligned_cols=242  Identities=17%  Similarity=0.237  Sum_probs=206.9

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+++|.+.|.++.|.  .++|++++.||.+.|||.-+..+......                                
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--------------------------------   95 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--------------------------------   95 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence            46789999999999998  77999999999999999987765443332                                


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC------eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS------KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~  226 (368)
                      ....|..++|+|.++++++|+.|+...||++.+.      +..+.+.+|.+.+.|+.|.+|+.|++++.|.+..+||+++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence            5578999999999999999999999999999865      3556788999999999999999999999999999999998


Q ss_pred             CCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEee
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGS  303 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~  303 (368)
                      +      +....+.+|.+.|.++.++| +++.+++|+.|+..++||++.+... +.+.+|...|  ++|.|+|.-+++|+
T Consensus       176 g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  176 G------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             c------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCeeeecC
Confidence            7      35788899999999999999 9999999999999999999998554 7888998877  56678999999999


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|++.++||++......++.-..-..+|++++||..|+            +|+.|..|.++.+|
T Consensus       249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR------------lLfagy~d~~c~vW  300 (343)
T KOG0286|consen  249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR------------LLFAGYDDFTCNVW  300 (343)
T ss_pred             CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc------------EEEeeecCCceeEe
Confidence            99999999999874444444444556899999999999            45555555555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2e-36  Score=280.10  Aligned_cols=278  Identities=15%  Similarity=0.235  Sum_probs=220.7

Q ss_pred             eccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce----------ecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325           39 SLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF----------CGFKASSGLVKAIVIS---GEKIFTGHQDGK  103 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~----------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~  103 (368)
                      .+..|.+.|.+++|+++  +||+|+.|+.|+|||.....          ..+ .+...+.+++|+   +.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence            35569999999999854  99999999999999975311          112 234678899986   679999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEE
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd  182 (368)
                      |++||+.+++...                                .+.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus       557 v~lWd~~~~~~~~--------------------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd  604 (793)
T PLN00181        557 VQVWDVARSQLVT--------------------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS  604 (793)
T ss_pred             EEEEECCCCeEEE--------------------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence            9999998765322                                2334999999999997 788999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      +++++.+..+..+ ..+.++.|++ ++ .+++|+.||.|++||++....     ....+.+|...|.++.|. ++.+|++
T Consensus       605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs  677 (793)
T PLN00181        605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVS  677 (793)
T ss_pred             CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEE
Confidence            9999998888754 6789999954 56 999999999999999986421     345567899999999997 6789999


Q ss_pred             ecCCCcEEEEeCCCcc-----ccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE-----------
Q 047325          261 GSSDGLVNFWEREKQL-----SHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS-----------  322 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------  322 (368)
                      ++.|+.|++||++...     .....+.+|...+  +++++++.+|++|+.|+.|++|+..........           
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            9999999999997531     2334566776654  667788999999999999999997644211111           


Q ss_pred             eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          323 VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       323 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ....|...|.+++|+|++.            .|++|+.||.|++|.
T Consensus       758 ~~~~~~~~V~~v~ws~~~~------------~lva~~~dG~I~i~~  791 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSS------------TLVAANSTGNIKILE  791 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCC------------eEEEecCCCcEEEEe
Confidence            1233556799999999999            788999999999883

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=244.51  Aligned_cols=245  Identities=22%  Similarity=0.366  Sum_probs=214.9

Q ss_pred             CCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~  109 (368)
                      .....++.+.||++.|.|+.|+...+++|+.|.+|++||..+  .+.++-+|...|..+.|+++++++++.|.++.+||+
T Consensus       225 n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  225 NSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             ccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEec
Confidence            344567789999999999999999999999999999999875  467889999999999999999999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      ........                             ..++.||...|+.+.|+.  +++++++.|.+|++|++.+++.+
T Consensus       305 ~sps~it~-----------------------------rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efv  353 (499)
T KOG0281|consen  305 ASPTDITL-----------------------------RRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFV  353 (499)
T ss_pred             cCchHHHH-----------------------------HHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeee
Confidence            87652211                             234567999999999964  59999999999999999999999


Q ss_pred             EEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          190 ESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       190 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                      .++.+|...|.|+.+. +.++++|+.|.+|++||+..+      .+++.+.+|+.-|.++.|  +.+.+++|..||+|++
T Consensus       354 Rtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  354 RTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV  424 (499)
T ss_pred             hhhhcccccceehhcc-CeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheee--cCceeeeccccceEEE
Confidence            9999999999988763 338999999999999999877      578899999999999999  4678999999999999


Q ss_pred             EeCCCcccc--------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          270 WEREKQLSH--------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       270 ~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ||+.....+        ......|.+.|..+.+|...+++++.|.+|.|||+..+
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence            999865443        23455789999999999999999999999999999765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-38  Score=230.69  Aligned_cols=275  Identities=20%  Similarity=0.297  Sum_probs=231.1

Q ss_pred             eccCcCCcEEEEEecC---C--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           39 SLVREEGHIYSLAASK---D--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~---~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      +-.||+.+|..++|++   +  +|++++.||.-.+-+-.  .-+-+|.+|.+.|.+...+  ...-++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            3569999999999973   3  89999999987776544  4477899999999999988  346778899999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-E
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-C  188 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~  188 (368)
                      -++..+..+.                                 |..-|..++|+.|.++|++|+.+..+++||++..+ +
T Consensus        89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence            9887655544                                 88899999999999999999999999999998754 5


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      ...+.+|.+.|..+.|.... .+++.+.|++||+||.+++..      .+.+ ....+|+++.++++|++|.++. .+.|
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~sL-~~~s~VtSlEvs~dG~ilTia~-gssV  207 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQSL-EFNSPVTSLEVSQDGRILTIAY-GSSV  207 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EEEE-ecCCCCcceeeccCCCEEEEec-Ccee
Confidence            67888999999999987766 888889999999999998732      3332 3456799999999999887764 5679


Q ss_pred             EEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecC
Q 047325          268 NFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      .+||..+-..+............+++|+...+++|++|..++.||+.++  ..+..+ ++|.++|.++.|+|+|.     
T Consensus       208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE-----  280 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGE-----  280 (334)
T ss_pred             EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCc-----
Confidence            9999998776655555566666889999999999999999999999987  445554 89999999999999999     


Q ss_pred             CcceEEEEEeeCCcccccccCC
Q 047325          347 SSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       347 ~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                             ..++||+||+||+|.
T Consensus       281 -------~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  281 -------LYASGSEDGTIRLWQ  295 (334)
T ss_pred             -------eeeccCCCceEEEEE
Confidence                   788899999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=239.12  Aligned_cols=284  Identities=18%  Similarity=0.237  Sum_probs=234.4

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGK  103 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~  103 (368)
                      +.+-..+++..|.||.+.|.|++-+++   .+++|+.||.|++||+.+  ....++.|.+.|..|++..+.+++++.|.+
T Consensus        51 eR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKt  130 (433)
T KOG0268|consen   51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKT  130 (433)
T ss_pred             HHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcc
Confidence            345667899999999999999999877   689999999999999985  466899999999999999999999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |+.|.++... ....                                 .....+..+.-+..++.+++||.  .|.|||.
T Consensus       131 vK~wk~~~~p-~~ti---------------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~  174 (433)
T KOG0268|consen  131 VKQWKIDGPP-LHTI---------------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDE  174 (433)
T ss_pred             eeeeeccCCc-ceee---------------------------------eccccccccccccccccccccCc--eeeeccc
Confidence            9999987631 0000                                 03455677777777788999986  5999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ....++..+.-....|.++.|+|..  .|++++.|+.|.+||+++...      +.... ....-+.|+|+|+.-.+++|
T Consensus       175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPEAFNFVAA  247 (433)
T ss_pred             ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceee-eeccccceecCccccceeec
Confidence            9999999999888899999999987  889999999999999998743      22221 23345789999988889999


Q ss_pred             cCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ++|..++.||++.-..+.....+|...++++  +|.|+-+++||.|.+|+||..+.+...-+.- ...-+.|.++.|+-|
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMD  326 (433)
T ss_pred             cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEecc
Confidence            9999999999998888888899999999665  5679999999999999999887652222211 112356999999999


Q ss_pred             CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          340 RDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      .+            ++++||+|++||+|.
T Consensus       327 sk------------yi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  327 SK------------YIISGSDDGNVRLWK  343 (433)
T ss_pred             cc------------EEEecCCCcceeeee
Confidence            99            799999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-35  Score=244.94  Aligned_cols=281  Identities=20%  Similarity=0.319  Sum_probs=229.2

Q ss_pred             ccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCC-CcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325           28 EENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDS-KNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ  100 (368)
Q Consensus        28 ~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~d-g~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~  100 (368)
                      ..++|...+++.+.--..+|..++++  |+.||.|+.. |.+-||+...+  +...++|...+++++++  |+++++|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence            56789999999998888999999998  8888888765 89999998765  44567899999999998  779999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ||.|+|||...+-+...                                +..|++.|+.+.|+..++.+++++.||+|+.
T Consensus       371 DgKVKvWn~~SgfC~vT--------------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVT--------------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             CCcEEEEeccCceEEEE--------------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            99999999988765333                                3449999999999999999999999999999


Q ss_pred             EEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcCCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325          181 WRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI  257 (368)
Q Consensus       181 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  257 (368)
                      ||+...+.-+++..+. ....|++..|.| .+++|+.|. .|.+|+++++      +.+..+.+|+++|.+++|+|.++.
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcceeeEEccccCe
Confidence            9999999998887654 356788999999 666777665 6999999987      467888999999999999999999


Q ss_pred             EEEecCCCcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee-----------------
Q 047325          258 VYCGSSDGLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT-----------------  319 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------  319 (368)
                      |++++.|.+|++||+-...... .....|...-.+|.|+|+.|+++.-||.|.+||.......                 
T Consensus       493 LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D  572 (893)
T KOG0291|consen  493 LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD  572 (893)
T ss_pred             EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccc
Confidence            9999999999999986543322 2333455556788899999999999999999997643111                 


Q ss_pred             -eeEeeeccccCeeEEEEecCCeeeecC
Q 047325          320 -CLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       320 -~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                       ....-.......+.+++++||..+.++
T Consensus       573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAg  600 (893)
T KOG0291|consen  573 RITAENSAKGKTFTTICYSADGKCILAG  600 (893)
T ss_pred             eeehhhcccCCceEEEEEcCCCCEEEec
Confidence             001111234579999999999954444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-36  Score=248.08  Aligned_cols=240  Identities=23%  Similarity=0.335  Sum_probs=216.0

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+..+...|.++.++  ...++++-.+|.|.||+.++......+..                                ..
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~~   55 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------SE   55 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------cc
Confidence            455688899999998  56888999999999999998775554443                                55


Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      .+|++..|-+..+.+++|+.|..|++|+..+++.+..+.+|...|++++.+|.. ++++++.|-.|++||.+.     ..
T Consensus        56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----~w  130 (794)
T KOG0276|consen   56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----EW  130 (794)
T ss_pred             cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----ce
Confidence            678889999988999999999999999999999999999999999999999998 999999999999999984     34


Q ss_pred             ccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe----CCCEEEEeeCCCeE
Q 047325          234 SLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA----AGKLVFSGSADKTI  308 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i  308 (368)
                      .+.+.+.+|...|.+++|.| |.+.+++++-|++|++|.+.+.... ..+.+|...|.|+.+    |..+|++|++|.+|
T Consensus       131 a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  131 ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-eeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence            57889999999999999999 6789999999999999999986554 678899999988886    45699999999999


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +|||+.+.  .+++++.+|...|..+.|+|.-.            .++|||+||+|||||
T Consensus       210 KvWDyQtk--~CV~TLeGHt~Nvs~v~fhp~lp------------iiisgsEDGTvriWh  255 (794)
T KOG0276|consen  210 KVWDYQTK--SCVQTLEGHTNNVSFVFFHPELP------------IIISGSEDGTVRIWN  255 (794)
T ss_pred             EEeecchH--HHHHHhhcccccceEEEecCCCc------------EEEEecCCccEEEec
Confidence            99999887  89999999999999999999998            799999999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-36  Score=238.00  Aligned_cols=238  Identities=23%  Similarity=0.393  Sum_probs=208.6

Q ss_pred             eccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC-cceecccC-CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325           39 SLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL-KEFCGFKA-SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~-~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      .++.|..+|.++.++  +.++++|+.+|.|++|+.. ..+..+.. |...|.+++|+  +..+++++.||+|+|||....
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            367899999999997  4599999999999999976 34455554 45999999999  679999999999999999866


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      .+.                                .++.||.-.|++++|+|...+|++++.|..|++||.++++++.++
T Consensus       213 kee--------------------------------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  213 KEE--------------------------------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             chh--------------------------------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            532                                234569999999999999999999999999999999999999999


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEE
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~  270 (368)
                      .+|+..|..+.|.+++ +|++++.|..++++|++..      +.+..+.+|+..++++.|+| ...+|.+|+.||.|..|
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence            9999999999999999 9999999999999999954      35777889999999999999 66789999999999999


Q ss_pred             eCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecC
Q 047325          271 EREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       271 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .+...+.+.....+|...|.+++  |-|.+|++|+.|.++++|.-.
T Consensus       335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99866666667778988886665  569999999999999999653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-36  Score=230.36  Aligned_cols=245  Identities=21%  Similarity=0.364  Sum_probs=218.6

Q ss_pred             cccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc---ceecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK---EFCGFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      -+...+++...++||++.|.+++|+  |.+|++++.|-.+++||..+   .+....+|...|.+++|-  |+++++++.|
T Consensus       135 ~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD  214 (406)
T KOG0295|consen  135 FDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD  214 (406)
T ss_pred             EEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence            3466778888999999999999997  56999999999999999875   455678999999999987  9999999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      .+|+.|++.++-+..                                .+.+|...|..++.+.||.++++++.|.+|++|
T Consensus       215 ~tik~We~~tg~cv~--------------------------------t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  215 NTIKAWECDTGYCVK--------------------------------TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             cceeEEecccceeEE--------------------------------eccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            999999999987544                                344599999999999999999999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCC--------------C--eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSE--------------G--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA  245 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  245 (368)
                      -+.++++...++.|+.+|.|++|.|.              +  .+.+++.|++|++||+.++      .++.++.+|...
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnw  336 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNW  336 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------eEEEEEecccce
Confidence            99999999999999999999999653              2  7899999999999999887      578899999999


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEe
Q 047325          246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWR  312 (368)
Q Consensus       246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~  312 (368)
                      |..++|+|.|++|+++.+|+++++||+++.++. ..+..|+..+.++.+  +..++++|+-|..+++|.
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999999999999999999999999999987776 455588888877776  467999999999999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-35  Score=243.67  Aligned_cols=271  Identities=20%  Similarity=0.297  Sum_probs=229.9

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      +.+.+..|+.+|.++.++|.  .++++-.+|.|.|||.+++  ...+.-..-+|.+..|-  .+.+++|+.|..|+||+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34556778999999999977  8888999999999998765  55677778889888887  678999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KC  188 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~  188 (368)
                      ++.+...                                .+..|.+-|++++.+|...++++++.|-.|++||-+.+ .+
T Consensus        85 nt~ekV~--------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~  132 (794)
T KOG0276|consen   85 NTGEKVK--------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC  132 (794)
T ss_pred             ccceeeE--------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee
Confidence            9987543                                44459999999999999999999999999999998754 67


Q ss_pred             EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC--CEEEEecCC
Q 047325          189 LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR--SIVYCGSSD  264 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d  264 (368)
                      .+++.+|...|.+++|+|..  .+++++-|++|++|.+.++      .+..++.+|+..|+++++-+.|  .+|++|+.|
T Consensus       133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD  206 (794)
T KOG0276|consen  133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD  206 (794)
T ss_pred             eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence            89999999999999999987  9999999999999999766      4577888999999999998844  699999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      ..+++||.++..+. ..+.+|...+  .+++|.-.++++|++||+++||+-.+.  +...++.-.-+.|++++-.+.+..
T Consensus       207 ~tiKvWDyQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty--~lE~tLn~gleRvW~I~~~k~~~~  283 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY--KLEKTLNYGLERVWCIAAHKGDGK  283 (794)
T ss_pred             ceEEEeecchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce--ehhhhhhcCCceEEEEeecCCCCe
Confidence            99999999987665 6788888777  455567789999999999999965554  555566666778999998887775


Q ss_pred             eecCC
Q 047325          343 SSSTS  347 (368)
Q Consensus       343 ~~~~~  347 (368)
                      ++.+.
T Consensus       284 i~vG~  288 (794)
T KOG0276|consen  284 IAVGF  288 (794)
T ss_pred             EEEec
Confidence            54443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-33  Score=213.32  Aligned_cols=280  Identities=20%  Similarity=0.306  Sum_probs=223.9

Q ss_pred             eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC--CCeEEEEee
Q 047325           38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ--DGKIRVWKI  109 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~vw~~  109 (368)
                      +.+..-.+.|+++.|+  |+.|++++.|.++++||...+  ......+.-.|..++|.  .+.++.++.  |.+|+..++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            3444567889999997  559999999999999998754  45566666678888887  666766666  889999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      .+++.                                .+.+.||...|++++.+|-+..+++++.|++|++||++..++.
T Consensus        88 ~dNky--------------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   88 HDNKY--------------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             ecCce--------------------------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence            98874                                3455679999999999999999999999999999999988888


Q ss_pred             EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          190 ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       190 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ..+.....+  .+++.|+| .+|++.....|++||+|..+++.-.... ...+.....+.+.|+|+|++++.+...+.++
T Consensus       136 g~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~  212 (311)
T KOG1446|consen  136 GLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDEAEWTDLEFSPDGKSILLSTNASFIY  212 (311)
T ss_pred             eEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence            777644443  47899999 6777776669999999987553221111 1124467789999999999999999999999


Q ss_pred             EEeCCCccccceeeeccce-----EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCee
Q 047325          269 FWEREKQLSHGGVLKGHKL-----AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDS  342 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~  342 (368)
                      +.|.-.+... ..+..+..     --.++.||++++++|+.||+|++|+++++  ..+..+.+ +.+++.++.|+|...+
T Consensus       213 ~lDAf~G~~~-~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg--~~v~~~~~~~~~~~~~~~fnP~~~m  289 (311)
T KOG1446|consen  213 LLDAFDGTVK-STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG--KKVAVLRGPNGGPVSCVRFNPRYAM  289 (311)
T ss_pred             EEEccCCcEe-eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC--cEeeEecCCCCCCccccccCCceee
Confidence            9998777644 33333322     23778899999999999999999999877  66777777 7899999999999999


Q ss_pred             eecCCcceEEEEE
Q 047325          343 SSSTSSCAQRWIV  355 (368)
Q Consensus       343 ~~~~~~~~~~w~l  355 (368)
                      +++++...-.|..
T Consensus       290 f~sa~s~l~fw~p  302 (311)
T KOG1446|consen  290 FVSASSNLVFWLP  302 (311)
T ss_pred             eeecCceEEEEec
Confidence            9999999988854

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-35  Score=227.01  Aligned_cols=277  Identities=23%  Similarity=0.332  Sum_probs=232.2

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      -.+.+..+.|..|+|+  +|++|+.||.|.+||..++          ...+.-+..+|.|+.|+  .+.|++|+.||.|+
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            3456677888888866  9999999999999997532          12355688999999999  67899999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +|.++++.+...+...                               |+..|+|+.|+.|+..+++++.|.++++.-+.+
T Consensus       289 vWri~tG~ClRrFdrA-------------------------------HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRA-------------------------------HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             EEEEecchHHHHhhhh-------------------------------hccCeeEEEEccCcchhhcccccceEEEecccc
Confidence            9999999987776643                               999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec--cccccEEEEEEcC-CCCEEEEe
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL--KQECAVTALVVSS-SRSIVYCG  261 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~  261 (368)
                      |+++..+++|...|+...|.++| .+++++.||+|++|+..+..      +...+.  +...+|.++..-| +...++.+
T Consensus       338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE------CLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh------hhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            99999999999999999999999 99999999999999998764      333332  3556788888777 55688888


Q ss_pred             cCCCcEEEEeCCCccccceeee----ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          262 SSDGLVNFWEREKQLSHGGVLK----GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      ...+++++.++...... ....    +..--..+++|.|.++++.++|+.++.|.+.++  ....++..|...|..++-+
T Consensus       412 Nrsntv~imn~qGQvVr-sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG--~LE~tl~VhEkdvIGl~HH  488 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVR-SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG--KLERTLPVHEKDVIGLTHH  488 (508)
T ss_pred             cCCCeEEEEeccceEEe-eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC--ceeeeeecccccccccccC
Confidence            89999999998754222 2211    112223678899999999999999999988776  6667788899999999999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      |..+            .+++-++||.+++|.
T Consensus       489 PHqN------------llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQN------------LLASYSEDGLLKLWK  507 (508)
T ss_pred             cccc------------hhhhhcccchhhhcC
Confidence            9988            789999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-35  Score=227.37  Aligned_cols=230  Identities=23%  Similarity=0.382  Sum_probs=202.2

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ..+.+|.+.|.|++++  ++.+++|+.|++|+|||+.+++...                                .+.||
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------------------------tltGh  192 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------------------------TLTGH  192 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------------------------eecch
Confidence            3467899999999998  7799999999999999999987433                                34569


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      ...|..+++++-..++++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|..+++||+|+..    
T Consensus       193 i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~----  268 (460)
T KOG0285|consen  193 IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA----  268 (460)
T ss_pred             hheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----
Confidence            9999999999999999999999999999999999999999999999999999987 99999999999999999763    


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEE
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~i  310 (368)
                        .+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..|...+.  ++.|....+++++.| .|+-
T Consensus       269 --~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-nik~  344 (460)
T KOG0285|consen  269 --SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-NIKQ  344 (460)
T ss_pred             --eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-ccee
Confidence              47888999999999999998889999999999999999988766 46667777775  455777888888887 5999


Q ss_pred             EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      |++..+  ..+..+.+|...|++++...|+-++..++
T Consensus       345 w~~p~g--~f~~nlsgh~~iintl~~nsD~v~~~G~d  379 (460)
T KOG0285|consen  345 WKLPEG--EFLQNLSGHNAIINTLSVNSDGVLVSGGD  379 (460)
T ss_pred             ccCCcc--chhhccccccceeeeeeeccCceEEEcCC
Confidence            988776  67777999999999999999997555444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-35  Score=214.99  Aligned_cols=233  Identities=22%  Similarity=0.283  Sum_probs=201.5

Q ss_pred             cCCcEEEEEecCC---EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCC
Q 047325           43 EEGHIYSLAASKD---LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        43 h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      -.+.++.++++++   .+++++.||++++||+.   .++..++.|...|.++.|+   ++.+++++.||+|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            3567889999754   89999999999999965   5678899999999999998   6778889999999999987655


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      .                                ...+.||...|...+|+| ..+.+++++.|+++++||++..-....+
T Consensus       139 S--------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i  186 (311)
T KOG0277|consen  139 S--------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI  186 (311)
T ss_pred             c--------------------------------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence            2                                344667999999999999 5789999999999999999865444448


Q ss_pred             ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEE
Q 047325          193 SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNF  269 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i  269 (368)
                      ..|...|.|+.|+.-+  .+++|+.|+.|+.||++...     .++..+.+|.-.|+.+.|+|. ...|++++.|-+++|
T Consensus       187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             EeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence            9999999999999866  99999999999999999754     367788999999999999995 468999999999999


Q ss_pred             EeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEe
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWR  312 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~  312 (368)
                      ||...+.........|...+..+.+   ++.++++.+.|+.++||+
T Consensus       262 w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  262 WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9999877777778889888876665   588999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=9.4e-34  Score=223.68  Aligned_cols=273  Identities=21%  Similarity=0.297  Sum_probs=232.4

Q ss_pred             CcEEEEEecC--CEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325           45 GHIYSLAASK--DLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        45 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~  118 (368)
                      -.|.++...+  +.++||+.|.++.++|..  +.+..+++|...|+.+.++  ...+++++.|-.|+||...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            3477887776  599999999999999976  4577899999999999998  567899999999999998776533322


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CC
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA--HD  196 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~  196 (368)
                      .                                .|..+|+.+..+|.|.||++++.|++..+.|++++..+.....  ..
T Consensus       300 ~--------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~  347 (506)
T KOG0289|consen  300 R--------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD  347 (506)
T ss_pred             c--------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence            2                                2999999999999999999999999999999999998877764  33


Q ss_pred             CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      -.+++.+|+||| .+.+|..|+.|++||+..+.      ....+.+|.++|..++|+.+|-+|++++.|+.|++||+|+.
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            468999999999 88999999999999998764      46778899999999999999999999999999999999987


Q ss_pred             cccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325          276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW  353 (368)
Q Consensus       276 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w  353 (368)
                      +............+  ++|...|.+|+.++.|=.|++++-.+..+..+..+..|.+..+.+.|....+            
T Consensus       422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq------------  489 (506)
T KOG0289|consen  422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ------------  489 (506)
T ss_pred             cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce------------
Confidence            65544444443344  5555669999999998888888777778889999999999999999999998            


Q ss_pred             EEeeCCcccccccC
Q 047325          354 IVYSGSLDKSDDDV  367 (368)
Q Consensus       354 ~l~sg~~D~~v~i~  367 (368)
                      +++++|.|..+|++
T Consensus       490 ~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  490 YLASTSMDAILRLY  503 (506)
T ss_pred             EEeeccchhheEEe
Confidence            78899999888875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.7e-34  Score=246.19  Aligned_cols=273  Identities=29%  Similarity=0.494  Sum_probs=232.3

Q ss_pred             cCCcEEEEEecCCEEEEccCCCcEEEEcCCcc--ee-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           43 EEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE--FC-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        43 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      |...+.+..+.++++++++.|++|++||..+.  +. .+.+|.+.|.++++.  +++|++|+.|.++++||..++++.. 
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-  285 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-  285 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-
Confidence            56678899999899999999999999998754  33 488999999999999  9999999999999999999888543 


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                                                     ++.+|.+.|.++...+  ..+++|+.|.+|++|+++++..+..+.+|..
T Consensus       286 -------------------------------~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  286 -------------------------------SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             -------------------------------EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence                                           3445999999998865  4788899999999999999999999999999


Q ss_pred             ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          198 AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       198 ~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      +|+++... .+.+++|+.|++|++||++..      +++..+.+|...|.++.+.+. +.+++|+.|+.|++||+++...
T Consensus       333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~  404 (537)
T KOG0274|consen  333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK  404 (537)
T ss_pred             cEEEEEec-CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence            99999998 559999999999999999865      578999999999999988765 8999999999999999999845


Q ss_pred             cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeeeecCCcceEEEEEe
Q 047325          278 HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSSSSTSSCAQRWIVY  356 (368)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~  356 (368)
                      ....+.+|...+..+...+++|++++.|+.|++||..++  .++..+.+ |...|..+++..+--+.++-++..++|.+-
T Consensus       405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             hhhhhcCCcccccccccccceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence            557888999999999999999999999999999998877  77888887 678899999872222222333445555554


Q ss_pred             eCC
Q 047325          357 SGS  359 (368)
Q Consensus       357 sg~  359 (368)
                      ++.
T Consensus       483 ~~~  485 (537)
T KOG0274|consen  483 SGT  485 (537)
T ss_pred             cCc
Confidence            443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=211.07  Aligned_cols=241  Identities=21%  Similarity=0.296  Sum_probs=208.7

Q ss_pred             ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325           74 EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI  151 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (368)
                      ....+..+.++|.++.|+  |+|.++++.|.+|++|+...+..+                                ..+.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------------------------------ktYs   56 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------------------------------KTYS   56 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------------------------------eeec
Confidence            445677899999999999  999999999999999998777543                                3455


Q ss_pred             ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      +|..+|..++.+.|+..|++|+.|..+.+||+.+|+.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.|.... 
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-  135 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-  135 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence            699999999999999999999999999999999999999999999999999999988 999999999999999997543 


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                         .+++.+......|.++...  +..+++|+.||+++.||++.+... ....+|+....+++++++..++++.|+++++
T Consensus       136 ---ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  136 ---EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             ---CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence               5677778888899999885  567999999999999999988765 4566889999999999999999999999999


Q ss_pred             EecCCCceeeeEeeeccccCe--eEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          311 WRRDGAIHTCLSVLTGHTGPV--KCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|-+++  +.++.+++|.+.=  ...+++....            .+++||+||.|.+|
T Consensus       210 lDk~tG--klL~sYkGhkn~eykldc~l~qsdt------------hV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  210 LDKETG--KLLKSYKGHKNMEYKLDCCLNQSDT------------HVFSGSEDGKVYFW  254 (307)
T ss_pred             cccchh--HHHHHhcccccceeeeeeeecccce------------eEEeccCCceEEEE
Confidence            987776  8899999998753  3445666666            57777777777766

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=236.99  Aligned_cols=312  Identities=17%  Similarity=0.288  Sum_probs=233.7

Q ss_pred             CCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ......++.||+.+|+++.|+  |..|++||.|+.|.+||+.  .++..+.+|...|+..-|.  .+.+++.+.|+.|++
T Consensus        96 s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~  175 (888)
T KOG0306|consen   96 SEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF  175 (888)
T ss_pred             CCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence            336778899999999999998  5699999999999999975  4566778888888888776  467888888888888


Q ss_pred             EeecCCCccccccCCc---------------------cc--------------------------------cc-------
Q 047325          107 WKISPKNQSVHKRAGT---------------------LP--------------------------------TL-------  126 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~---------------------~~--------------------------------~~-------  126 (368)
                      ||+++..+........                     ..                                ..       
T Consensus       176 WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s  255 (888)
T KOG0306|consen  176 WDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS  255 (888)
T ss_pred             EecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence            8887644321100000                     00                                00       


Q ss_pred             eeeeec----------------------------------------------------------------------cCCC
Q 047325          127 KDIFKS----------------------------------------------------------------------SIKP  136 (368)
Q Consensus       127 ~~~~~~----------------------------------------------------------------------~~~~  136 (368)
                      ..++.+                                                                      ...+
T Consensus       256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~  335 (888)
T KOG0306|consen  256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE  335 (888)
T ss_pred             ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence            000000                                                                      0000


Q ss_pred             Cc----------eeEecc-c---------ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325          137 SN----------YIEVRR-H---------RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD  196 (368)
Q Consensus       137 ~~----------~~~~~~-~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  196 (368)
                      ..          +..+.. .         ......||...|.+++++.+...+++|+ .+.|++|+..+.++++++... 
T Consensus       336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-  413 (888)
T KOG0306|consen  336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-  413 (888)
T ss_pred             eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-
Confidence            00          000000 0         0123467999999999999887777776 478999999999999999743 


Q ss_pred             CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                       .+.+..|.|.+ ++++|...|.+.+||+...      ..+.....|.+.|.+++.+||+..+++|+.|.+|++||..--
T Consensus       414 -y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  414 -YILASKFVPGDRYIVLGTKNGELQVFDLASA------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             -cEEEEEecCCCceEEEeccCCceEEEEeehh------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence             78888999988 9999999999999999765      346677799999999999999999999999999999997521


Q ss_pred             cc-----cc-------ee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          276 LS-----HG-------GV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       276 ~~-----~~-------~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      ..     ..       .. ......-...++||+++|+++--|++++||-+++.  +....+.||.-||.+|..+||+. 
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~DSk-  563 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSK-  563 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccCCcC-
Confidence            11     00       00 11122333567789999999999999999999886  66778899999999999999999 


Q ss_pred             eecCCcceEEEEEeeCCcccccccC
Q 047325          343 SSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       343 ~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                 .++|||.|++||||
T Consensus       564 -----------livTgSADKnVKiW  577 (888)
T KOG0306|consen  564 -----------LIVTGSADKNVKIW  577 (888)
T ss_pred             -----------eEEeccCCCceEEe
Confidence                       89999999999999

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-34  Score=244.14  Aligned_cols=276  Identities=20%  Similarity=0.322  Sum_probs=235.2

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      +...+.+|..++|+|.  .++++-..|.|++||..  ..+..|..|.++|..++|.  ...+++|+.|-.|+||+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            4455678899999987  89999999999999976  5677899999999999998  6799999999999999998877


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (368)
                      +...                                +.||-+-|..+.|++.-..+++++.|.+|+||+..+++++..+.
T Consensus        85 clft--------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   85 CLFT--------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             ehhh--------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence            5443                                34599999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc-----------------------ccccceeeccccccEEEE
Q 047325          194 AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT-----------------------KHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       194 ~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~  249 (368)
                      +|...|.|..|+|.. .+++++-|.+|++||+....+..                       .......+.+|...|+-+
T Consensus       133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa  212 (1202)
T KOG0292|consen  133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA  212 (1202)
T ss_pred             cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence            999999999999966 99999999999999986432210                       111234567899999999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCc-cccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  326 (368)
                      +|+|.-..+++|+.|..|++|.+... .-......+|...|.++-  |..+++++.|+|++|+|||+...  ..+++++.
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR--t~v~tfrr  290 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR--TSVQTFRR  290 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc--cceeeeec
Confidence            99999999999999999999998743 233356778988886655  45689999999999999999876  77888887


Q ss_pred             cccCeeEEEEecCCeeeecCCcc
Q 047325          327 HTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       327 h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      ..+.-+.++-+|..+++|.+..+
T Consensus       291 endRFW~laahP~lNLfAAgHDs  313 (1202)
T KOG0292|consen  291 ENDRFWILAAHPELNLFAAGHDS  313 (1202)
T ss_pred             cCCeEEEEEecCCcceeeeecCC
Confidence            88899999999999977776443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-33  Score=207.10  Aligned_cols=265  Identities=16%  Similarity=0.222  Sum_probs=220.0

Q ss_pred             eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEe
Q 047325           38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~  108 (368)
                      +.+++|.+.|.+++|+  |..|++|+.|+++++|++...    .....+|.+.|..++|+   ++.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5688999999999996  669999999999999998743    23567899999999998   78999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      +..+++.....                                 .+..-.-+.|+|+++++++++.|..|...|.++.+.
T Consensus        94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence            99888654443                                 233344688999999999999999999999999888


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      +...+ ....+..+.|+.++ +++.....|.|.|...-..      +++..+..|.....|+.|+|+|++||+|+.|..+
T Consensus       141 ~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  141 VNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             eehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeecccccee
Confidence            77665 34556778887666 6666677899999887543      5688889999999999999999999999999999


Q ss_pred             EEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          268 NFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .+||++.-.+. +.+..+.-+|  ++|+.||++||+|++|..|-|=+++++  ..+..++ +.++...++|+|...+||.
T Consensus       214 SLWD~~ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG--d~~~eI~-~~~~t~tVAWHPk~~LLAy  289 (313)
T KOG1407|consen  214 SLWDVDELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG--DRVWEIP-CEGPTFTVAWHPKRPLLAY  289 (313)
T ss_pred             eccChhHhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccC--CeEEEee-ccCCceeEEecCCCceeeE
Confidence            99999875444 5555566666  556668999999999999999988887  5566664 8899999999999998775


Q ss_pred             C
Q 047325          346 T  346 (368)
Q Consensus       346 ~  346 (368)
                      +
T Consensus       290 A  290 (313)
T KOG1407|consen  290 A  290 (313)
T ss_pred             E
Confidence            4

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-33  Score=207.78  Aligned_cols=243  Identities=21%  Similarity=0.321  Sum_probs=198.1

Q ss_pred             ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      .+..+++|.+.+..++|+   |..|++|+.|+.|++|+...+......                            ...-
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck----------------------------~vld   57 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK----------------------------TVLD   57 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE----------------------------Eecc
Confidence            345678999999999999   338999999999999999853211110                            0011


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC--CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD--SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      .+|+..|++++|+|.|++|++++.|.++.||.-..  .+++..+++|+..|.|++|+++| +|++++.|..|-||.+...
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            24999999999999999999999999999998654  46889999999999999999999 9999999999999999854


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC--CccccceeeeccceEEEEEE--eCCCEEEEee
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE--KQLSHGGVLKGHKLAVLCLA--AAGKLVFSGS  303 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~  303 (368)
                         .++.+...+..|...|..+.|+|...+|++++.|++|++|+-.  ..-.....+.+|...+.++.  +.|..|++++
T Consensus       138 ---dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  138 ---DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             ---CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence               5566788899999999999999999999999999999999866  23344567888987776554  5689999999


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|++++||.....      .-..|+.++..++|. ++             .++|++.|+.||+|
T Consensus       215 dD~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~~-------------~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  215 DDGTVSIWRLYTD------LSGMHSRALYDVPWD-NG-------------VIASGGGDDAIRLF  258 (312)
T ss_pred             CCcceEeeeeccC------cchhcccceEeeeec-cc-------------ceEeccCCCEEEEE
Confidence            9999999964432      112478899999999 55             46777777777765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-34  Score=209.86  Aligned_cols=257  Identities=19%  Similarity=0.287  Sum_probs=212.8

Q ss_pred             CCcEEEEcCC--cceeccc--CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325           63 SKNIRVWKNL--KEFCGFK--ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK  135 (368)
Q Consensus        63 dg~i~iw~~~--~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (368)
                      .|++.|-++.  +.+....  .-...+..++|+   .+.+++++.||++++||+.....                     
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------------------   95 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------------------   95 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------------
Confidence            5788888874  3333322  235678899998   67899999999999999654332                     


Q ss_pred             CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEE
Q 047325          136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFT  212 (368)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~  212 (368)
                                +...++.|..+|.++.|++ ++..+++++.|++|++||...++.+.++.+|...|....|+|..  .+++
T Consensus        96 ----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen   96 ----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             ----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence                      2233445999999999998 56678888999999999999999999999999999999999976  9999


Q ss_pred             EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325          213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC  291 (368)
Q Consensus       213 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  291 (368)
                      ++.|+.+++||++..++     . ..+..|...|.++.|+. +.+.|++|+.|+.|+.||+++-+.+...+.+|...|..
T Consensus       166 ~Sgd~~l~lwdvr~~gk-----~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk  239 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGK-----F-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK  239 (311)
T ss_pred             ccCCceEEEEEecCCCc-----e-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence            99999999999997754     2 23777888999999997 77899999999999999999988888899999998866


Q ss_pred             EEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          292 LAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       292 ~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +.+.   ..+|++++.|-+++|||...+ ...+.+...|++-+..+.|++-...           .+++.+.|..+.||.
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~~-----------~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDPG-----------QVASTGWDELLYVWN  307 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccCc-----------eeeecccccceeeec
Confidence            6543   678999999999999998754 2556677789999999999986543           789999999999983

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.3e-33  Score=219.26  Aligned_cols=270  Identities=20%  Similarity=0.370  Sum_probs=214.9

Q ss_pred             CCCceeeeccCcCCcEEEEEec-CC----EEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe--CCEEEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAAS-KD----LLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~-~~----~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~   98 (368)
                      ..+.....+.||.++|.++++- .+    .|++++.|.++++|..+..      .....+|...|.++...  +..+++|
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg  211 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG  211 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence            3467788899999999988873 22    6999999999999976532      33445999999999987  8899999


Q ss_pred             eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF  178 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  178 (368)
                      +.|.+|++|+.+...............       ...........+.+...+.||..+|.++.|++ ...+++++.|.+|
T Consensus       212 S~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTI  283 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTI  283 (423)
T ss_pred             cccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceE
Confidence            999999999944332211111000000       00000011123345667889999999999998 6689999999999


Q ss_pred             EEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCC
Q 047325          179 KVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRS  256 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  256 (368)
                      +.||+.++..+.++.. ...++|+..+|.. +|++|+.|..|++||.|.++   .......+.+|...|.++.|+| +..
T Consensus       284 k~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs~v~~s~~gH~nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  284 KVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GSVVSQSLIGHKNWVSSVKWSPTNEF  359 (423)
T ss_pred             EEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC---CceeEEeeecchhhhhheecCCCCce
Confidence            9999999999988875 4678999999988 99999999999999999873   3345678889999999999999 456


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEec
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRR  313 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~  313 (368)
                      +|++|+.|+++++||+++...+...+.+|...++++.+. +.+|++|+.|++|+|+.-
T Consensus       360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence            788999999999999999887778999999999999995 669999999999999953

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-34  Score=216.33  Aligned_cols=320  Identities=18%  Similarity=0.285  Sum_probs=243.8

Q ss_pred             CCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      ....+++.+.||.+.|+.++...  .++.+++.|.+.+||.++..  +..+.+|.+.|+++.|.  +..+++++.|++-.
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            34567788999999999998863  39999999999999998854  66889999999999998  77899999999999


Q ss_pred             EEeecC----CCccccccC--CccccceeeeeccCCCCceeE--ecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCc
Q 047325          106 VWKISP----KNQSVHKRA--GTLPTLKDIFKSSIKPSNYIE--VRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRT  177 (368)
Q Consensus       106 vw~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  177 (368)
                      ||...-    .+.......  .......+......+.....+  ..+.+...+.+|...|.+..|...++.+++++.|.+
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT  295 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT  295 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence            997321    111110000  000000000000000000111  122345567889999999999999999999999999


Q ss_pred             EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325          178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS  256 (368)
Q Consensus       178 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  256 (368)
                      -.+||+++++++..+.+|+...+.++-+|.. ++++.+.|.+.++||++..     ...+..+.+|...|++..|..+ .
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~d-d  369 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTD-D  369 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecC-C
Confidence            9999999999999999999999999999988 8889999999999999843     2467789999999999999875 5


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE--eeeccccCeeE
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS--VLTGHTGPVKC  333 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~  333 (368)
                      .+++|+.|.+|++||+++...+...+.. ....-+.++..+..|+.--++..|++||+.......+-  .-.+|...|.|
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c  449 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC  449 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence            6889999999999999987766555543 33444666777789999999999999999765322222  34689999999


Q ss_pred             EEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++|..+...          -.|++++.|+.+-=|
T Consensus       450 ~AW~eehp~----------cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  450 CAWLEEHPA----------CNLFTCGFDRMVAGW  473 (481)
T ss_pred             eeccccCcc----------cccccccccceeeee
Confidence            999987653          168888888877655

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-33  Score=234.37  Aligned_cols=276  Identities=24%  Similarity=0.346  Sum_probs=229.3

Q ss_pred             eeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325           38 GSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      .++.||...|.+++++.+ .++..+..+.+++|+..+..+..+...+.+.+..|-  +.++++|...|.+.++|+.....
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence            457899999999999877 333334457899999886555444444577777776  77999999999999999988765


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-----CeEE
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-----SKCL  189 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~  189 (368)
                      ......                                |.+.|.+++..||+..+++|+.|.+|++||..-     +...
T Consensus       447 ~Eti~A--------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~  494 (888)
T KOG0306|consen  447 VETIRA--------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK  494 (888)
T ss_pred             hhhhhc--------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence            444432                                999999999999999999999999999999742     1111


Q ss_pred             --------EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          190 --------ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       190 --------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                              .++ .-+..|.|+.++||+ +|+++--|.++++|-+++.      +....+.+|.-||.|+..+||++.+++
T Consensus       495 k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV~smDIS~DSklivT  567 (888)
T KOG0306|consen  495 KVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPVLSMDISPDSKLIVT  567 (888)
T ss_pred             eeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccccceeEEeccCCcCeEEe
Confidence                    112 235679999999999 9999999999999999765      456678899999999999999999999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      |+.|..|++|-++-+.+. ..+.+|...|+++.  |....+++++.|+.|+-||-+.  ...++.+.+|...|++++.+|
T Consensus       568 gSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  568 GSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             ccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcC
Confidence            999999999999987776 46667888886655  6788999999999999996554  488999999999999999999


Q ss_pred             CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|.            +++|+|.|.+||+|
T Consensus       645 ~G~------------~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  645 NGS------------FVVSSSHDKSIRLW  661 (888)
T ss_pred             CCC------------eEEeccCCceeEee
Confidence            999            78999999999998

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=240.46  Aligned_cols=249  Identities=20%  Similarity=0.364  Sum_probs=194.4

Q ss_pred             cCCCceeeecc-CcCCcEEEEEecC--CEEEEccCCCcEEEEcCCc----------------------------------
Q 047325           31 LPQNGLIGSLV-REEGHIYSLAASK--DLLYTGSDSKNIRVWKNLK----------------------------------   73 (368)
Q Consensus        31 ~~~~~~~~~~~-~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~----------------------------------   73 (368)
                      +..-...+.+. .|.+.|+++.|++  .|||+||.|+.|+||.+..                                  
T Consensus       253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI  332 (712)
T ss_pred             ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence            33344455566 8999999999974  4999999999999996321                                  


Q ss_pred             ----------------------------ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccc
Q 047325           74 ----------------------------EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLP  124 (368)
Q Consensus        74 ----------------------------~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  124 (368)
                                                  +++.|.+|.+.|..|.|+ +++|++++.|.+||+|++...+++..+.     
T Consensus       333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-----  407 (712)
T KOG0283|consen  333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-----  407 (712)
T ss_pred             cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----
Confidence                                        233477899999999999 8899999999999999999877655443     


Q ss_pred             cceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE
Q 047325          125 TLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV  203 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  203 (368)
                                                  |.+-|+|++|+| |.++|++|+-||.|+||++...+.+.-.. -..-|++++
T Consensus       408 ----------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvc  458 (712)
T KOG0283|consen  408 ----------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVC  458 (712)
T ss_pred             ----------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEE
Confidence                                        999999999999 78899999999999999998877665544 347899999


Q ss_pred             eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc---eeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc
Q 047325          204 SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA---QTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       204 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +.|+| ..++|+.+|.+++|+.+...........   .....+. .|+.+.|.|.. ..+++.+.|..|+|||.+.....
T Consensus       459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv  537 (712)
T KOG0283|consen  459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV  537 (712)
T ss_pred             eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence            99999 9999999999999999865321111110   0011223 79999999843 45778889999999999765444


Q ss_pred             ceee---eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          279 GGVL---KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       279 ~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ....   ..+......|+.||++|+++++|..|++|+++
T Consensus       538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            2222   22233346778899999999999999999973

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-33  Score=210.51  Aligned_cols=240  Identities=22%  Similarity=0.334  Sum_probs=197.7

Q ss_pred             CCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEeccccee
Q 047325           71 NLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA  148 (368)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (368)
                      +...+..+.+|.+.|+.+.|+  |.+|++|+.|..|.+|++....+.                               ..
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-------------------------------~~   84 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-------------------------------FW   84 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-------------------------------ee
Confidence            344566788999999999998  889999999999999997655421                               12


Q ss_pred             eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325          149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~  226 (368)
                      .+.+|.+.|..+.|.+|++.+++++.|.+++.||+++|+.+..+++|..-|+.+.-..-|  ++.+++.|+++++||+|.
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            234599999999999999999999999999999999999999999999999999866666  788899999999999996


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeC
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSA  304 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~  304 (368)
                      ..       .......+..++++.|...+..+.+|+-|+.|++||++..... ....+|..+|+.+  +++|.++.+-+.
T Consensus       165 k~-------~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  165 KE-------AIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             cc-------hhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccc
Confidence            52       2223345667999999999999999999999999999987655 7889999998554  578999999999


Q ss_pred             CCeEEEEecCCC--ceeeeEeeeccc----cCeeEEEEecCCeeeecCCcc
Q 047325          305 DKTICVWRRDGA--IHTCLSVLTGHT----GPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       305 dg~i~iw~~~~~--~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      |.++++||++..  ..+++..+.+|.    ......+|+|++..+..++.+
T Consensus       237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d  287 (338)
T KOG0265|consen  237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD  287 (338)
T ss_pred             cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc
Confidence            999999999742  345577776654    235677999999955444333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=225.14  Aligned_cols=289  Identities=19%  Similarity=0.292  Sum_probs=230.0

Q ss_pred             cccccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEE
Q 047325           27 FEENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~   98 (368)
                      +.++.-+......+..|.+.+..+.|-.  +.|++|+.|..|++|++...    ...+.+..++|+++.|+  +.+++++
T Consensus       158 ~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  158 FVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             hhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence            3344444455566889999999999964  49999999999999998643    45677888999999998  7899999


Q ss_pred             eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF  178 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  178 (368)
                      +.|+.+++|+++..+...                                .+.||.+.|+++.|......+++|+.|.+|
T Consensus       238 s~d~~~r~Wnvd~~r~~~--------------------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRH--------------------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTI  285 (459)
T ss_pred             cCCCceeeeeccchhhhh--------------------------------hhcccccceeeehhhccccceeeccccchh
Confidence            999999999998876433                                344599999999999877779999999999


Q ss_pred             EEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ++||+....+..++- ....+..|... ...+++|-.|+.|++||++...      +..... ..+.|+++..++++..|
T Consensus       286 K~WDl~k~~C~kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~------~~~sv~-~gg~vtSl~ls~~g~~l  356 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSAD------KTRSVP-LGGRVTSLDLSMDGLEL  356 (459)
T ss_pred             hhhhhhhhheecccc-ccccccceEec-ceeeeecccccceEEEeccCCc------eeeEee-cCcceeeEeeccCCeEE
Confidence            999999988877664 34556666665 2378899999999999998763      233333 34489999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccc-----eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE
Q 047325          259 YCGSSDGLVNFWEREKQLSHG-----GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC  333 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~  333 (368)
                      .+++.|.++.+.|+++.....     ....+|.-.-..|+|++.|+++||.||.|+||++.+++.+.+.........|++
T Consensus       357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITS  436 (459)
T ss_pred             eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEE
Confidence            999999999999999765432     223356666688999999999999999999999988744433333322336999


Q ss_pred             EEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ++|+|.|.            .+++++.++.+.+|.
T Consensus       437 ~~W~~sG~------------~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  437 LSWNPSGS------------GLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEcCCCc------------hhhcccCCcceEecC
Confidence            99999999            677788888888873

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.5e-32  Score=252.90  Aligned_cols=261  Identities=20%  Similarity=0.225  Sum_probs=203.0

Q ss_pred             CCcEEEEcCCcce-------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325           63 SKNIRVWKNLKEF-------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS  133 (368)
Q Consensus        63 dg~i~iw~~~~~~-------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (368)
                      +|.+++|+.....       ..+..|...|.+++|+  ++++++|+.|+.|++|++..........  ..          
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~----------  524 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HY----------  524 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--cc----------
Confidence            6778888765321       2245689999999998  7899999999999999976421100000  00          


Q ss_pred             CCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eE
Q 047325          134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LI  210 (368)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l  210 (368)
                                  ... ...+...|.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++ +|
T Consensus       525 ------------~~~-~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        525 ------------PVV-ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             ------------ceE-EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence                        000 011456789999987 478999999999999999999999999999999999999997 55 89


Q ss_pred             EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc-CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE
Q 047325          211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS-SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV  289 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  289 (368)
                      ++|+.|+.|++||++...      ....+. +...+.++.|+ +++++|++|+.||.|++||+++.........+|...+
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V  664 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGV------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV  664 (793)
T ss_pred             EEEcCCCEEEEEECCCCc------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence            999999999999998652      233333 33578899995 5799999999999999999987655555677898888


Q ss_pred             EEEEe-CCCEEEEeeCCCeEEEEecCCC----ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325          290 LCLAA-AGKLVFSGSADKTICVWRRDGA----IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       290 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v  364 (368)
                      .++.+ ++.+|++++.|++|++||+...    ...++..+.+|...++.++|+|++.            +|++|+.|+.|
T Consensus       665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~------------~lasgs~D~~v  732 (793)
T PLN00181        665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG------------YIATGSETNEV  732 (793)
T ss_pred             EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC------------EEEEEeCCCEE
Confidence            77765 6889999999999999998643    2356778899999999999999999            45566666666


Q ss_pred             ccC
Q 047325          365 DDV  367 (368)
Q Consensus       365 ~i~  367 (368)
                      ++|
T Consensus       733 ~iw  735 (793)
T PLN00181        733 FVY  735 (793)
T ss_pred             EEE
Confidence            655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-32  Score=229.40  Aligned_cols=274  Identities=27%  Similarity=0.441  Sum_probs=230.4

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCC-cc---eecccCCCCCeeE-EEEe---CCEEEEEeCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNL-KE---FCGFKASSGLVKA-IVIS---GEKIFTGHQD  101 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~-~~---~~~~~~~~~~v~~-~~~~---~~~l~s~~~d  101 (368)
                      ++..++-+.+.+|...|..++...+ .++++|.||++++|+-. ++   ...+.+|.+.|.. +++.   +..+++|+.|
T Consensus         1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D   80 (745)
T KOG0301|consen    1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD   80 (745)
T ss_pred             CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence            3566778899999999999988755 79999999999999864 22   3346777777776 7765   4579999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ++|.+|.+.+..+..                                .+.||...|.++....++. +++|+.|.++++|
T Consensus        81 ~~i~v~~~~~~~P~~--------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW  127 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLY--------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVW  127 (745)
T ss_pred             ceEEEEecCCCCchh--------------------------------hhhccccceeeeecCCcCc-eEecccccceEEe
Confidence            999999998776433                                3456999999999888876 9999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      -.  +++...+++|...|.+++.-|++.+++|+.|..|++|.-.        ..++.+.+|...|+.+++-+++ .++++
T Consensus       128 ~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~~-~flSc  196 (745)
T KOG0301|consen  128 RI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDDS-HFLSC  196 (745)
T ss_pred             cc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecCC-CeEee
Confidence            75  5677779999999999999999999999999999999874        3688899999999999999764 57889


Q ss_pred             cCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      +.||.|++|++.. ..+ ....+|...+++++  .++..++++++|++++||+.+    .+.+.+.-....|+++.+-++
T Consensus       197 sNDg~Ir~w~~~g-e~l-~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  197 SNDGSIRLWDLDG-EVL-LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLN  270 (745)
T ss_pred             cCCceEEEEeccC-cee-eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeC
Confidence            9999999999954 443 57789999998887  478899999999999999765    566666655568999999999


Q ss_pred             CeeeecCCcceEEEEEeeCCcccccccC
Q 047325          340 RDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |.             +++|+.||.||||
T Consensus       271 gD-------------Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  271 GD-------------IVVGGSDGRVRVF  285 (745)
T ss_pred             CC-------------EEEeccCceEEEE
Confidence            97             7788888888887

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-32  Score=236.99  Aligned_cols=239  Identities=25%  Similarity=0.448  Sum_probs=199.3

Q ss_pred             CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      .+...|.++.|+  |+.+++++.|+.+++|+........                              ...+.+|...|
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~------------------------------~~~l~~h~~~v  206 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL------------------------------LRELSGHTRGV  206 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh------------------------------hccccccccce
Confidence            347789999988  8899999999999999996554200                              11123499999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEc-cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRI-SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      .+++|+|+++++++++.|++|++||+ ..+..++++++|...|++++|+|++ .+++|+.|++|++||++.+      .+
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~------~~  280 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG------EC  280 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC------eE
Confidence            99999999999999999999999999 5568999999999999999999999 9999999999999999975      47


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-ceeeeccc----eEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-GGVLKGHK----LAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      ...+..|...|++++|++++++|++++.|+.|++||+.++... ...+..+.    .....++|++.+++++..|+.+++
T Consensus       281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~  360 (456)
T KOG0266|consen  281 VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL  360 (456)
T ss_pred             EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence            8899999999999999999999999999999999999987731 22333322    344677789999999999999999


Q ss_pred             EecCCCceeeeEeeeccccC---eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          311 WRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ||+...  ..+..+.+|...   +.+...++.+.            .+++|+.|+.|++|+
T Consensus       361 w~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  361 WDLRSG--KSVGTYTGHSNLVRCIFSPTLSTGGK------------LIYSGSEDGSVYVWD  407 (456)
T ss_pred             EEccCC--cceeeecccCCcceeEecccccCCCC------------eEEEEeCCceEEEEe
Confidence            999876  677788888875   34445567777            577888888888774

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-32  Score=216.80  Aligned_cols=258  Identities=21%  Similarity=0.337  Sum_probs=209.7

Q ss_pred             cCCcEEEEEecC----CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325           43 EEGHIYSLAASK----DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        43 h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      ..+.|.+++|+|    ++.+|+|.  .+.||+...  ....+......|.++.|.  |..|++|...|.|+|+|..+...
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence            357899999987    36656554  688888653  344566677889999997  89999999999999999554222


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (368)
                      ..                                .+.+|..+|..+.|+|+ +..+++|+.|+.+++||+.+......+.
T Consensus       103 LR--------------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen  103 LR--------------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             HH--------------------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            11                                23349999999999995 5577888889999999999988877899


Q ss_pred             cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          194 AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       194 ~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      +|+..|.|.+++|..  .+++|+.||.|++||++...      .......|..+|..+.+-|.|..+++++. ..|++||
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWD  223 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWD  223 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence            999999999999976  89999999999999999753      23344578999999999999999999875 5799999


Q ss_pred             CCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      +-++.........|...|+|+..  ++..|++|+-|+.|++||+.+.  +.+..+. ..+||.+++.+|+++.++
T Consensus       224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--Kvv~s~~-~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY--KVVHSWK-YPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce--EEEEeee-cccceeeEEecCCCceEE
Confidence            99766665666668888888776  6799999999999999986554  6666664 678999999999999433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-33  Score=207.65  Aligned_cols=251  Identities=21%  Similarity=0.337  Sum_probs=211.7

Q ss_pred             cccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee-cccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           27 FEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      ...+=..+..+.+|.||+++|++...+.+  ..|+++.|-+-++||..+.-. .-..|..-|.+++|+  .++|++|+.+
T Consensus        42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e  121 (334)
T KOG0278|consen   42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE  121 (334)
T ss_pred             hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchH
Confidence            33444567889999999999999999877  788999999999999765422 233578889999998  7799999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ..+||+|++..+....                               .+.+|.+.|..+.|....+.|+++..|++|++|
T Consensus       122 kllrvfdln~p~App~-------------------------------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW  170 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPK-------------------------------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLW  170 (334)
T ss_pred             HHhhhhhccCCCCCch-------------------------------hhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence            9999999987764322                               233499999999999988999999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      |.+++..++++. .+.+|+++..+++|.+++....+.|.+||....+.      ++. ......|.+...+|+...+++|
T Consensus       171 D~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~------lKs-~k~P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  171 DHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL------LKS-YKMPCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             EeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccc------eee-ccCccccccccccCCCceEEec
Confidence            999999999997 56789999999999888888899999999986532      222 2345668999999999999999


Q ss_pred             cCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ++|..++.||..++..+....++|.++|.|  |+|+|...++|++||+|++|.....
T Consensus       243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            999999999999998886666889988865  5579999999999999999977544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3e-32  Score=238.14  Aligned_cols=296  Identities=20%  Similarity=0.267  Sum_probs=222.0

Q ss_pred             CCcEEEEEecCC--EEEEcc--CCCcEEEEcCC--------------cceecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           44 EGHIYSLAASKD--LLYTGS--DSKNIRVWKNL--------------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~--~dg~i~iw~~~--------------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      +..|++++.+++  .++||+  .||.++||+..              +.++....|.+.|+|+.|+  |.+||+|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            456899998877  999999  99999999742              3355677899999999998  889999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |.||+........  ..+.            .....-...-.....+.+|...|..++|+|++.+|++++.|++|.+||.
T Consensus        93 v~iW~~~~~~~~~--~fgs------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   93 VMIWERAEIGSGT--VFGS------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             EEEeeecccCCcc--cccc------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence            9999987411000  0000            0000001112234567789999999999999999999999999999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .+.+.+..+++|...|..+.|.|-| +|++-+.|++|++|++..-+....................+.|+|||++|++..
T Consensus       159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999999999999999 999999999999999765321110000111112345688999999999999864


Q ss_pred             C----CCcEEEEeCCCccccceeeeccceEEEEEEeC-------CC------------EEEEeeCCCeEEEEecCCCcee
Q 047325          263 S----DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-------GK------------LVFSGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       263 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------~l~~~~~dg~i~iw~~~~~~~~  319 (368)
                      .    -.++.|.+..+.. ....+.+|..++.++.++       .+            .+|+|+.|++|.||.....  +
T Consensus       239 A~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--R  315 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--R  315 (942)
T ss_pred             hccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC--C
Confidence            2    3467888765543 335677888877665542       11            6889999999999976443  5


Q ss_pred             eeEee-eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          320 CLSVL-TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       320 ~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ++... .-....|.+++|+|||.            .|+.+|.||+|.++|
T Consensus       316 Pl~vi~~lf~~SI~DmsWspdG~------------~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  316 PLFVIHNLFNKSIVDMSWSPDGF------------SLFACSLDGTVALIH  353 (942)
T ss_pred             chhhhhhhhcCceeeeeEcCCCC------------eEEEEecCCeEEEEE
Confidence            55443 23467899999999999            788999999998876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=222.32  Aligned_cols=292  Identities=15%  Similarity=0.223  Sum_probs=216.5

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce---ec----ccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF---CG----FKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~---~~----~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ..+.+|+..|.++++++.  .|++||.|-+|++||+...-   ..    .......|.++.|+  ++.|++.+.....++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            457889999999999755  99999999999999976321   11    12345578888888  888888888889999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +|-+..+.....+...                    .........||...++|.+|+|. ...|++++.||+++|||+..
T Consensus       241 ~DRdG~~~~e~~KGDQ--------------------YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQ--------------------YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             EccCCceeeeeeccch--------------------hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence            9976554322221110                    00112234569999999999995 45899999999999999976


Q ss_pred             Ce-EEEEee-----cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCC
Q 047325          186 SK-CLESVS-----AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRS  256 (368)
Q Consensus       186 ~~-~~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~  256 (368)
                      .+ .+..++     +..-+++.++|++++ .+++|+.||.|.+|+......   .........|..  .|+|+.|+++|+
T Consensus       301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCCCCceeEEEeccccc
Confidence            43 333333     234568899999999 999999999999999864422   222333445655  899999999999


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeee----ccceEEEEEEeCCCEEEEeeC------CCeEEEEecCCCceeeeEeeec
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLK----GHKLAVLCLAAAGKLVFSGSA------DKTICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~  326 (368)
                      +|++-+.|+++++||++..+.+.....    .....-.||+|+.++|++|..      .|.+.+||..+.  ..++.+.-
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~--d~v~ki~i  455 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL--DTVYKIDI  455 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce--eeEEEecC
Confidence            999999999999999998766544433    234455899999999999864      578999976654  66777766


Q ss_pred             cccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          327 HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       327 h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      ....|..+.|+|.-+            +++.|+.||++++
T Consensus       456 ~~aSvv~~~WhpkLN------------Qi~~gsgdG~~~v  483 (641)
T KOG0772|consen  456 STASVVRCLWHPKLN------------QIFAGSGDGTAHV  483 (641)
T ss_pred             CCceEEEEeecchhh------------heeeecCCCceEE
Confidence            778899999999877            4455555555554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=234.32  Aligned_cols=253  Identities=28%  Similarity=0.459  Sum_probs=215.9

Q ss_pred             cccCCCceeee-ccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325           29 ENLPQNGLIGS-LVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGK  103 (368)
Q Consensus        29 ~~~~~~~~~~~-~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~  103 (368)
                      -+..+...+.+ +.||.+.|.++++.  +++|++|+.|.++++||..+.  ...+.+|...|.++...+.++++|+.|.+
T Consensus       233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~t  312 (537)
T KOG0274|consen  233 WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNT  312 (537)
T ss_pred             eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCce
Confidence            33445556666 99999999999998  789999999999999998754  55788999999999999999999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |++|+++++...                                .++.+|..+|+++..+  +.++++|+.|+.|++||+
T Consensus       313 VkVW~v~n~~~l--------------------------------~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  313 VKVWDVTNGACL--------------------------------NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             EEEEeccCcceE--------------------------------EEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence            999999977632                                3344599999999998  779999999999999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      .+++++..+.+|...|.++.+.+...+++|+.|+.|++||++...     .+...+.+|..-+..+.+  .+++|++++.
T Consensus       359 ~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a  431 (537)
T KOG0274|consen  359 RTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSA  431 (537)
T ss_pred             hhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEeccc
Confidence            999999999999999999988776799999999999999998652     467788888888866655  5789999999


Q ss_pred             CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325          264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  324 (368)
                      |+.|++||..++.........|...+.++......+++++.||++++||+++.  .+...+
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~--~~~~~l  490 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG--TLIRTL  490 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccC--chhhhh
Confidence            99999999998877643333367888888887788999999999999999876  444444

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.8e-31  Score=226.80  Aligned_cols=272  Identities=16%  Similarity=0.232  Sum_probs=196.1

Q ss_pred             EecCCEEEEccCCCcEEEEcCCcc---------------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCC
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKE---------------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~---------------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      ++++..+++++.+.....|+....               ...+.+|.+.|.+++|+   +++|++|+.||+|++||+.++
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~  108 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE  108 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence            344445555555555556653211               12367899999999997   468999999999999999765


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      ......                         ......+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..
T Consensus       109 ~~~~~~-------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~  163 (493)
T PTZ00421        109 GLTQNI-------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV  163 (493)
T ss_pred             cccccc-------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence            321100                         01223456699999999999975 6999999999999999999999999


Q ss_pred             eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc-EEEEEEcCCCCEEEEec----CCC
Q 047325          192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA-VTALVVSSSRSIVYCGS----SDG  265 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg  265 (368)
                      +..|...|.+++|+|++ +|++++.|+.|++||++.+.      ....+..|.+. ...+.|.+++..+++++    .|+
T Consensus       164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~------~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT------IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc------EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence            99999999999999999 99999999999999998752      34555666654 45677888877777654    478


Q ss_pred             cEEEEeCCCccccceeeeccc---eEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeee-ccccCeeEEEEecCC
Q 047325          266 LVNFWEREKQLSHGGVLKGHK---LAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLT-GHTGPVKCLAVEEDR  340 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~  340 (368)
                      .|++||+++...+......+.   .....+++++++|++|+ .|+.|++||+....  ...... .+..++..++|.|..
T Consensus       238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--eEEEeeccCCCCCcceEecccc
Confidence            999999987554433332222   22244667899998887 59999999998763  333332 356678899999875


Q ss_pred             eeeecCCcceEEEEE
Q 047325          341 DSSSSTSSCAQRWIV  355 (368)
Q Consensus       341 ~~~~~~~~~~~~w~l  355 (368)
                      ..=.....-.+++.|
T Consensus       316 ~~dv~~~Ei~r~~~l  330 (493)
T PTZ00421        316 SLDTRKCEIARFYAL  330 (493)
T ss_pred             cccccceeeeEEEEe
Confidence            532323333444443

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.2e-30  Score=225.39  Aligned_cols=251  Identities=12%  Similarity=0.212  Sum_probs=188.7

Q ss_pred             EccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325           59 TGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS  133 (368)
Q Consensus        59 s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (368)
                      .|+.++.|++|+..+  .+..+.+|.+.|.+++|+   +++|++|+.||+|++||+.++.......              
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------------  114 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------------  114 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------------
Confidence            467789999999764  456788999999999998   4699999999999999998653211000              


Q ss_pred             CCCCceeEecccceeeeeecCCCEeEEEEcCCCCE-EEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE
Q 047325          134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL-LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF  211 (368)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  211 (368)
                                ......+.+|...|.+++|+|++.. |++++.|+.|++||+++++.+..+. +...|.+++|+++| +|+
T Consensus       115 ----------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLa  183 (568)
T PTZ00420        115 ----------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLS  183 (568)
T ss_pred             ----------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEE
Confidence                      0012234569999999999998875 5788999999999999998877776 56789999999999 888


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE-----EEEcCCCCEEEEecCCC----cEEEEeCCCccccceee
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA-----LVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGGVL  282 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~  282 (368)
                      +++.|+.|++||++.+.      ....+.+|.+.+.+     ..|++++++|++++.|+    .|++||++....+....
T Consensus       184 t~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        184 GTCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             EEecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            88999999999998763      34566777765433     23568888999877664    79999999643333332


Q ss_pred             ec--cceEEE-EEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          283 KG--HKLAVL-CLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       283 ~~--~~~~~~-~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ..  +...++ .+.+ ++.++++|+.|+.|++|++..+....+..+. +..++.+++|.|+..
T Consensus       258 ~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        258 SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence            22  222221 2223 4889999999999999999776444455444 678899999999865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=201.26  Aligned_cols=263  Identities=20%  Similarity=0.305  Sum_probs=208.8

Q ss_pred             CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325           44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      ++.|.+|+|++.   +++.||.||+||+|++...    -.....|.++|.+++|+  |..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            677999999974   7779999999999998752    23456799999999998  88999999999999999999863


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      ...                                 ..|..+|.++.|-+...  .|++|+.|.+|+.||+++..++.++
T Consensus       107 ~~v---------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen  107 SQV---------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             eee---------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            222                                 22999999999988655  8999999999999999999999888


Q ss_pred             ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      .- .+.+.++..-. .+++++..++.|.+|+++.+...    .........-.++|++..++....+.|+-+|.+.+..+
T Consensus       154 ~L-PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te----~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  154 QL-PERVYAADVLY-PMAVVATAERHIAVYNLENPPTE----FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             ec-cceeeehhccC-ceeEEEecCCcEEEEEcCCCcch----hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            74 45677765432 27888899999999999765321    11111223456889999898888899999999999988


Q ss_pred             CCc-cccceeeeccce---------EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          273 EKQ-LSHGGVLKGHKL---------AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       273 ~~~-~~~~~~~~~~~~---------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      ..+ ......++.|..         .|  ++|.|....|++++.||++.+||-+..  ..+++.+.|..+|++.+|+.+|
T Consensus       228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--~kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--TKLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh--hhhhccCcCCCccceeEecCCC
Confidence            763 222344555542         12  567788889999999999999987655  6677888899999999999999


Q ss_pred             eeeecCC
Q 047325          341 DSSSSTS  347 (368)
Q Consensus       341 ~~~~~~~  347 (368)
                      .++|.+-
T Consensus       306 ~ifaYA~  312 (347)
T KOG0647|consen  306 SIFAYAL  312 (347)
T ss_pred             CEEEEEe
Confidence            9887664

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=207.25  Aligned_cols=248  Identities=21%  Similarity=0.300  Sum_probs=201.1

Q ss_pred             ccccccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEe--CCEEEEEe
Q 047325           26 QFEENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      -|.-++..+++...+.+|++.|+++.|+.  .+||||+.+|.|+||+..+..  ..+......+.=+.|.  +..|++|+
T Consensus        88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~  167 (399)
T KOG0296|consen   88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS  167 (399)
T ss_pred             EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec
Confidence            34556777889999999999999999974  499999999999999987543  3333344556666666  78999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .||.+-+|.+.++.                                ..+++.||..++++=.|.|+|+.++++..||+|+
T Consensus       168 ~DGsvWmw~ip~~~--------------------------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  168 TDGSVWMWQIPSQA--------------------------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             CCCcEEEEECCCcc--------------------------------eeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            99999999998753                                2345667999999999999999999999999999


Q ss_pred             EEEccCCeEEEEeec---------------------------------------------------CCCceEEEEeCCCC
Q 047325          180 VWRISDSKCLESVSA---------------------------------------------------HDDAVNSVVSSSEG  208 (368)
Q Consensus       180 iwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~~~~~~~~  208 (368)
                      +||+.+++++..+..                                                   +...+.|+.+.|..
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s  295 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS  295 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence            999999988776641                                                   01112223333322


Q ss_pred             ----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec
Q 047325          209 ----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG  284 (368)
Q Consensus       209 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  284 (368)
                          +.++|+-||+|.|||+...       ..+....|+.+|..+.|.+ ..+|++++.+|.|+.||.++++.. ..+.+
T Consensus       296 s~lpL~A~G~vdG~i~iyD~a~~-------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~-~~y~G  366 (399)
T KOG0296|consen  296 SKLPLAACGSVDGTIAIYDLAAS-------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK-FTYTG  366 (399)
T ss_pred             cccchhhcccccceEEEEecccc-------hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE-EEEec
Confidence                5688899999999999764       3556667889999999998 789999999999999999998776 78899


Q ss_pred             cceEEEEEE--eCCCEEEEeeCCCeEEEEecC
Q 047325          285 HKLAVLCLA--AAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       285 ~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      |...|++|.  |+.++++++|.|++.+||++.
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999997765  689999999999999999753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-31  Score=202.77  Aligned_cols=255  Identities=18%  Similarity=0.283  Sum_probs=202.4

Q ss_pred             EEEccCCCcEEEEcCC--------------cceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325           57 LYTGSDSKNIRVWKNL--------------KEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        57 l~s~~~dg~i~iw~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  122 (368)
                      |++|+....|.=+++.              .++-.+..|.++|++++.++.++++|+.|-+|+|||+....+....    
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l----   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL----   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcce----
Confidence            5666666665555432              1233578899999999999999999999999999999877643322    


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCeEEEEeecCCCceE
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSKCLESVSAHDDAVN  200 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  200 (368)
                                                  ..|.+.|+++.|.++..  .|++|+.||.|.+|+....+++..+++|.+.|+
T Consensus        80 ----------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   80 ----------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             ----------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence                                        23999999999998764  899999999999999999999999999999999


Q ss_pred             EEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325          201 SVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       201 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      .++.+|.+ +-++.+.|+.+++||+-.+...    ...   .-....+.+.|+|.|.+++.+..++ |-+|.+++.....
T Consensus       132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a----~v~---~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVA----FVL---NLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR  203 (362)
T ss_pred             eeEecCCCceEEEEcCCceeeeehhhcCccc----eee---ccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence            99999999 6678899999999999766331    111   1122234489999999998887755 8999988755443


Q ss_pred             eeeeccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE--ecCCeeeecCCcceEEEEEe
Q 047325          280 GVLKGHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV--EEDRDSSSSTSSCAQRWIVY  356 (368)
Q Consensus       280 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~~~~~~w~l~  356 (368)
                      ...  .+..+.++.+ ++..|++|++|+.|.+||.+..  .+...+.+|...|.++.+  .|++.            +|+
T Consensus       204 ~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~~~~~~------------~lv  267 (362)
T KOG0294|consen  204 EIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYTNPEHE------------YLV  267 (362)
T ss_pred             hhh--ccccceeeeecCCceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEecCCce------------EEE
Confidence            222  2255667776 6889999999999999987764  788899999999999985  35565            788


Q ss_pred             eCCcccccccC
Q 047325          357 SGSLDKSDDDV  367 (368)
Q Consensus       357 sg~~D~~v~i~  367 (368)
                      |+|.||.|++|
T Consensus       268 TaSSDG~I~vW  278 (362)
T KOG0294|consen  268 TASSDGFIKVW  278 (362)
T ss_pred             EeccCceEEEE
Confidence            88888888888

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.2e-33  Score=222.34  Aligned_cols=242  Identities=18%  Similarity=0.262  Sum_probs=203.9

Q ss_pred             cceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceee
Q 047325           73 KEFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTAL  149 (368)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (368)
                      +.+..+.+|+..|+++.|.   +.+|++++.|+.|+||++-.....                               .+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-------------------------------lrt  253 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-------------------------------LRT  253 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-------------------------------ehh
Confidence            4566789999999999987   789999999999999999874322                               334


Q ss_pred             eeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCC
Q 047325          150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~  227 (368)
                      +.+|..+|.+++|+++|..|++++.|+.|++||+++|+++..+. ....+.|+.++|++  .+++|+.|+.|+.||+|.+
T Consensus       254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            55699999999999999999999999999999999999999997 45678999999998  8999999999999999987


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce--eeeccceEEEEEEeCCCEEEEeeCC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG--VLKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                            ..++....|-+.|..+.|-++++.+++.+.|+.++||+.+.+.....  ....|..+.+.++|++.++++-+.|
T Consensus       333 ------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  333 ------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             ------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence                  46788888999999999999999999999999999999887654433  3446788889999999999999999


Q ss_pred             CeEEEEecCCC-ceeeeEeeeccccC--eeEEEEecCCeeeecCCcceEE
Q 047325          306 KTICVWRRDGA-IHTCLSVLTGHTGP--VKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       306 g~i~iw~~~~~-~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      +.|.+|.+... .......+++|..+  -..+.|||||.+|+++++++++
T Consensus       407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence            99999986533 22334567778643  6678999999966666555444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.2e-32  Score=204.29  Aligned_cols=282  Identities=18%  Similarity=0.260  Sum_probs=221.9

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------------------ceecccCCCCCeeEEEEe--C
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------------------EFCGFKASSGLVKAIVIS--G   92 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------------------~~~~~~~~~~~v~~~~~~--~   92 (368)
                      ...+..|++++.+-+|+++  ++|||+.|-.|+|.|+++                    .+.++-.|...|+++.|.  .
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            4557889999999999866  999999999999999751                    134566789999999999  6


Q ss_pred             CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325           93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA  172 (368)
Q Consensus        93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  172 (368)
                      ..|++|+.|++|+++|+.........+.-                              ....+|.++.|+|.|.+|++|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~------------------------------qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF------------------------------QDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh------------------------------hccceeeeEeecCCCceEEEe
Confidence            79999999999999999865433222211                              145689999999999999999


Q ss_pred             eCCCcEEEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-c-cccE
Q 047325          173 SWDRTFKVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-Q-ECAV  246 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~i  246 (368)
                      ....++++||+.+.++...-   ..|.+.|+++.+++.+ +.++++.||.|++||--.+      +++..+.. | ...|
T Consensus       235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~------rCv~t~~~AH~gsev  308 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN------RCVRTIGNAHGGSEV  308 (430)
T ss_pred             cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH------HHHHHHHhhcCCcee
Confidence            99999999999998876544   3588999999999999 8899999999999997654      34554432 3 3568


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-ceEE-----EEEEeCCCEEEEeeC-CCeEEEEecCCCcee
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-KLAV-----LCLAAAGKLVFSGSA-DKTICVWRRDGAIHT  319 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~  319 (368)
                      .+..|..+++++++.+.|..+++|.+.++..+....... .+..     ..|.....+++.-.+ .+.+.-||-++....
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence            999999999999999999999999999887764333221 1111     223334556655543 577999998887554


Q ss_pred             eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          320 CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .+.. .+|.+++..+.-+|.+.            -+.|||.|...|.|
T Consensus       389 ~l~s-lgHn~a~R~i~HSP~~p------------~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  389 ALLS-LGHNGAVRWIVHSPVEP------------AFMTCSDDFRARFW  423 (430)
T ss_pred             hhcc-cCCCCCceEEEeCCCCC------------ceeeecccceeeee
Confidence            4444 47999999999999999            68899999999988

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-32  Score=230.93  Aligned_cols=268  Identities=19%  Similarity=0.263  Sum_probs=197.5

Q ss_pred             ccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCC---------------cc-ccc-----------
Q 047325           77 GFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAG---------------TL-PTL-----------  126 (368)
Q Consensus        77 ~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---------------~~-~~~-----------  126 (368)
                      .+. .|.+.|.++.|+  |+|||+|+.||.|+||.+...+........               .. ...           
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            345 899999999998  999999999999999998762221000000               00 000           


Q ss_pred             -eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325          127 -KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS  205 (368)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  205 (368)
                       ........-+.....+...+...+.||...|.++.|+.+ ++|++++.|.+|+||++...+++..|. |...|+|++|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence             000000112222334455667788999999999999976 589999999999999999999999997 99999999999


Q ss_pred             CCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee--
Q 047325          206 SEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV--  281 (368)
Q Consensus       206 ~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--  281 (368)
                      |-.  ++++|+-||.|+||++...       .+........-|++++|.|+|+..+.|+.+|.+++|+.+..+.....  
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~-------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDK-------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcC-------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            966  9999999999999999754       23444445578999999999999999999999999998754332211  


Q ss_pred             ------eeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc--CeeEEEEecCCeeeecCCcce
Q 047325          282 ------LKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG--PVKCLAVEEDRDSSSSTSSCA  350 (368)
Q Consensus       282 ------~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~  350 (368)
                            ...|. .|+.|.+   +...+++.+.|..|||||.+..  .++..++++..  .=....|+.||+         
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~Dgk---------  559 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSDGK---------  559 (712)
T ss_pred             eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch--hhhhhhcccccCCcceeeeEccCCC---------
Confidence                  11233 6777765   3445777789999999988655  56666776543  234568999999         


Q ss_pred             EEEEEeeCCcccccccCC
Q 047325          351 QRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       351 ~~w~l~sg~~D~~v~i~h  368 (368)
                         .+++|++|..|.+|+
T Consensus       560 ---~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  560 ---HIVSASEDSWVYIWK  574 (712)
T ss_pred             ---EEEEeecCceEEEEe
Confidence               566777777777774

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-30  Score=197.12  Aligned_cols=303  Identities=16%  Similarity=0.215  Sum_probs=216.1

Q ss_pred             CCCccccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe-
Q 047325           21 NPGWSQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS-   91 (368)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~-   91 (368)
                      +..|...++..-..-.+..|++|.+.|++++|+  |..|+|++.|++|++|++..-.      ......-+.-+.+.|. 
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            445666666666666778899999999999997  5599999999999999976311      1111222345677777 


Q ss_pred             --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325           92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL  169 (368)
Q Consensus        92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  169 (368)
                        ...+++.-...++++|.+...+.-... ....                   .......-..|.-.+..+-...++.+|
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~-~~~v-------------------~~D~~~f~~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGS-HHFV-------------------HIDNLEFERKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCC-cccc-------------------cccccccchhcccceEEEeecCCceEE
Confidence              346777777788999987654321000 0000                   000000111266677777788888999


Q ss_pred             EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC--cccccceeeccccccE
Q 047325          170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG--TKHSLAQTLLKQECAV  246 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~i  246 (368)
                      ++++.|..|.+||++ |+.+..+......-...+.+|+| .+++++..-.|++|.+--...+  .+......+.+|+..|
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV  281 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV  281 (420)
T ss_pred             EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence            999999999999998 99999998777777888999999 8888899999999997544332  2334456788999999


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCc----cccc--ee--e----eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ----LSHG--GV--L----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~--~~--~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ..++|+++...+++.+.||.+++||+.-.    +.+.  ..  .    .+.....+.++|+++.|+.+. ...+++|..+
T Consensus       282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se  360 (420)
T KOG2096|consen  282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE  360 (420)
T ss_pred             eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc
Confidence            99999999999999999999999997621    1110  01  0    111223488999999998765 4469999776


Q ss_pred             CCceeeeEee-eccccCeeEEEEecCCeeeecCC
Q 047325          315 GAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       315 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      .+  +....+ ..|...|.+|+|+++|++++++.
T Consensus       361 ~g--~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  361 DG--KDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             cC--ccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence            65  222222 45999999999999999665543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-31  Score=218.26  Aligned_cols=259  Identities=20%  Similarity=0.348  Sum_probs=211.2

Q ss_pred             EEEEccCCCcEEEEcCCcce-e-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLKEF-C-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~-~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      .||+|. ...|++|+..+.. . ....+...|+++.|+  |.+|++|..+|.|.|||..+.+........          
T Consensus       190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~----------  258 (484)
T KOG0305|consen  190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS----------  258 (484)
T ss_pred             eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC----------
Confidence            666654 4579999976432 2 233348899999998  999999999999999999877654444322          


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE-eecCCCceEEEEeCCCC-e
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES-VSAHDDAVNSVVSSSEG-L  209 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~  209 (368)
                                           |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++ +
T Consensus       259 ---------------------h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~  315 (484)
T KOG0305|consen  259 ---------------------HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ  315 (484)
T ss_pred             ---------------------cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence                                 88999999998  56899999999999999998876655 88999999999999999 9


Q ss_pred             EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEe--cCCCcEEEEeCCCccccceeeeccc
Q 047325          210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCG--SSDGLVNFWEREKQLSHGGVLKGHK  286 (368)
Q Consensus       210 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~  286 (368)
                      +++|+.|+.+.|||....      .+...+..|...|.+++|+| ...+||+|  +.|++|++||..++..+.....+..
T Consensus       316 lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ  389 (484)
T KOG0305|consen  316 LASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ  389 (484)
T ss_pred             eccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc
Confidence            999999999999999544      35778889999999999999 56688885  4799999999999888866666666


Q ss_pred             eEEEEEEeCCCEEEEe--eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325          287 LAVLCLAAAGKLVFSG--SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       287 ~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v  364 (368)
                      ..-+.+++..+-|+++  ..++.|.||++.+.  ..+..+.+|...|..++++|||.            .+++|+.|.++
T Consensus       390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~------------~i~t~a~DETl  455 (484)
T KOG0305|consen  390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGE------------TIVTGAADETL  455 (484)
T ss_pred             eeeEEEcCCCCEEEEecCCCCCcEEEEecccc--ceeeeecCCcceeEEEEECCCCC------------EEEEecccCcE
Confidence            5556666666555554  45778999988775  78889999999999999999999            56677777777


Q ss_pred             ccCC
Q 047325          365 DDVH  368 (368)
Q Consensus       365 ~i~h  368 (368)
                      |+|.
T Consensus       456 rfw~  459 (484)
T KOG0305|consen  456 RFWN  459 (484)
T ss_pred             Eecc
Confidence            7663

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-30  Score=213.60  Aligned_cols=239  Identities=27%  Similarity=0.455  Sum_probs=195.0

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ..+++|..+|.+++|+  +++|++++.||.+++|++.+++...                                .+..|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------------------------~~~~~   50 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------------------------TLKGH   50 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------------------------EEecC
Confidence            4567899999999998  5899999999999999998765211                                12237


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      ...+..+.|.|+++++++++.||.|++||+.+++.+..+..|...+.++.|++++ .+++++.++.|++||++..     
T Consensus        51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  125 (289)
T cd00200          51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-----  125 (289)
T ss_pred             CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----
Confidence            8888999999999999999999999999999988888899999999999999988 7777777999999999854     


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEE
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~i  310 (368)
                       .....+..|...+.+++|+|++.++++++.++.|++||+++.+.. ..+..|...+.  +++++++.+++++.||.|++
T Consensus       126 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         126 -KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             -EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence             234555678889999999999999999988999999999866554 44556665664  45567779999999999999


Q ss_pred             EecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEE
Q 047325          311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIV  355 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l  355 (368)
                      ||+...  ..+..+..|..++.++.|+|++.+++++  ++...+|.+
T Consensus       204 ~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         204 WDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             EECCCC--ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence            998775  5667777899999999999998855544  233444444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=229.62  Aligned_cols=241  Identities=22%  Similarity=0.333  Sum_probs=207.7

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+......|..++|.  .-.++++-..|.|++||.+-+.....+.                                +|.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd--------------------------------eHd   51 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------------------------------EHD   51 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh--------------------------------ccC
Confidence            456677889999998  4589999999999999998776544333                                399


Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ++|..+.|+|++.++++|+.|-.|++|+..+.+++.++.+|-..|+.+.|++.- .+++++.|.+|+||+..+.      
T Consensus        52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------  125 (1202)
T KOG0292|consen   52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------  125 (1202)
T ss_pred             CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------
Confidence            999999999999999999999999999999999999999999999999999988 9999999999999999866      


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc----------------------------ccceeeecc
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------------------------SHGGVLKGH  285 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~  285 (368)
                      .++..+.+|...|.|..|+|....+++++-|.+|++||+..-+                            ..+..+.+|
T Consensus       126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence            4788899999999999999999999999999999999975210                            112344567


Q ss_pred             ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325          286 KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       286 ~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~  363 (368)
                      ...|  .+|+|.-.++++|++|..|++|.+...+.=.+-+..+|.+.|.++-|+|...            ++.|.|+|++
T Consensus       206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~------------lIlSnsEDks  273 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD------------LILSNSEDKS  273 (1202)
T ss_pred             ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc------------eeEecCCCcc
Confidence            6666  4566667899999999999999987654455667789999999999999887            7889999999


Q ss_pred             cccC
Q 047325          364 DDDV  367 (368)
Q Consensus       364 v~i~  367 (368)
                      ||||
T Consensus       274 irVw  277 (1202)
T KOG0292|consen  274 IRVW  277 (1202)
T ss_pred             EEEE
Confidence            9998

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-30  Score=197.64  Aligned_cols=259  Identities=16%  Similarity=0.283  Sum_probs=201.9

Q ss_pred             ceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeC----CEEEEEeCCCeEEEEe
Q 047325           35 GLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISG----EKIFTGHQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~vw~  108 (368)
                      ..+..+..|.++|++++.++.++|+||.|-+|+|||+.+  ++..+..|.+.|+++.|.+    ..|++|+.||.|.+|+
T Consensus        34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            335668899999999999999999999999999999875  4567889999999999983    2799999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      ...-....                                .+.+|...|+.++++|.+++.++.+.|+.+++||+-+|+.
T Consensus       114 ~~~W~~~~--------------------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  114 VGSWELLK--------------------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cCCeEEee--------------------------------eecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            87664322                                2344999999999999999999999999999999999887


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      -..++-. .....+.|+|.| +++.+..+ .|-+|.+....      .... ...+..+.++.|. ++..|++|..|+.|
T Consensus       162 a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~------v~~~-i~~~~r~l~~~~l-~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  162 AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS------VFRE-IENPKRILCATFL-DGSELLVGGDNEWI  231 (362)
T ss_pred             ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHh------Hhhh-hhccccceeeeec-CCceEEEecCCceE
Confidence            6655532 223448999999 67776655 68899887542      1222 2222446666665 56789999999999


Q ss_pred             EEEeCCCccccceeeeccceEEEEEEe----CCCEEEEeeCCCeEEEEecCCCce---eeeEeeeccccCeeEEEEe
Q 047325          268 NFWEREKQLSHGGVLKGHKLAVLCLAA----AGKLVFSGSADKTICVWRRDGAIH---TCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~l~~~  337 (368)
                      .+||.... .+...+.+|..+|-.+.+    ++.+|++++.||.|+|||++....   ..+..+.. ...++|+...
T Consensus       232 ~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  232 SLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             EEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence            99999874 444788899999988774    467999999999999999976422   23333332 5567777654

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=7.4e-30  Score=219.53  Aligned_cols=203  Identities=20%  Similarity=0.299  Sum_probs=163.6

Q ss_pred             eccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325           39 SLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGK  103 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~  103 (368)
                      .+.+|.+.|++++|++   ++|++|+.|++|++||+..         .+..+.+|...|.+++|+   +++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3789999999999986   3899999999999999853         245678999999999998   368999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |++||+++++...                                .+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus       150 VrIWDl~tg~~~~--------------------------------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~  197 (493)
T PTZ00421        150 VNVWDVERGKAVE--------------------------------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP  197 (493)
T ss_pred             EEEEECCCCeEEE--------------------------------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence            9999998765322                                22348899999999999999999999999999999


Q ss_pred             cCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEc----CCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCC
Q 047325          184 SDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGS----ADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRS  256 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~  256 (368)
                      ++++.+..+.+|.+. ...+.|.+++ .+++++    .|+.|++||++....     +..... .....+....|+++++
T Consensus       198 rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----p~~~~~~d~~~~~~~~~~d~d~~  272 (493)
T PTZ00421        198 RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----PYSTVDLDQSSALFIPFFDEDTN  272 (493)
T ss_pred             CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----ceeEeccCCCCceEEEEEcCCCC
Confidence            999999999888765 3456788776 665543    479999999986532     222222 2334566678999999


Q ss_pred             EEEEec-CCCcEEEEeCCCcccc
Q 047325          257 IVYCGS-SDGLVNFWEREKQLSH  278 (368)
Q Consensus       257 ~l~~~~-~dg~i~i~d~~~~~~~  278 (368)
                      +|++++ .|+.|++||++++...
T Consensus       273 ~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        273 LLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             EEEEEEeCCCeEEEEEeeCCceE
Confidence            999887 5999999999976544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=8.6e-31  Score=208.27  Aligned_cols=246  Identities=20%  Similarity=0.264  Sum_probs=202.7

Q ss_pred             eccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCcc------------eecccCCCCCeeEEEEe---CCEEEEEeC
Q 047325           39 SLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKE------------FCGFKASSGLVKAIVIS---GEKIFTGHQ  100 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~~~v~~~~~~---~~~l~s~~~  100 (368)
                      ....|.+.|+.+.+-   +.++|+++..+.|.|||..+.            ...+.+|...-++++|+   ...|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            345789999988875   449999999999999996521            22577898888889998   568999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFK  179 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  179 (368)
                      |++|++||+.........                         ......+.+|...|..++|++ +..+|++++.|+.+.
T Consensus       199 d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             CCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence            999999999876532110                         113455677999999999999 566899999999999


Q ss_pred             EEEcc--CCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-
Q 047325          180 VWRIS--DSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-  254 (368)
Q Consensus       180 iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  254 (368)
                      |||++  +.++.....+|.+.|.|++|+|-+  .||+|+.|++|.+||+|....     ++..+.+|+..|..+.|+|+ 
T Consensus       254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCC
Confidence            99999  567778888999999999999987  999999999999999997654     77889999999999999995 


Q ss_pred             CCEEEEecCCCcEEEEeCCCcc-------------ccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecC
Q 047325          255 RSIVYCGSSDGLVNFWEREKQL-------------SHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~  314 (368)
                      ...|++++.|+.+.+||+..-.             .+...-.+|...|..|+++   .-.|++.+.|+.+.||++.
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            4588999999999999986321             1224556899999888875   4578999999999999775

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=9.5e-30  Score=192.82  Aligned_cols=264  Identities=16%  Similarity=0.238  Sum_probs=207.2

Q ss_pred             CCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      ++.|.++.|++.  .|+.++.||++++||.... +...-.|..++.+++|. ...+++|+.||.|+.+|+++++..... 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig-   91 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG-   91 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec-
Confidence            567999999843  7777889999999998754 33445689999999998 678999999999999999988643222 


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV  199 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  199 (368)
                                                      .|..+|.|+.+.+....+++|+.|++|++||.+.......+.. ...|
T Consensus        92 --------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV  138 (323)
T KOG1036|consen   92 --------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV  138 (323)
T ss_pred             --------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence                                            2999999999999888999999999999999998666666653 3478


Q ss_pred             EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---c
Q 047325          200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---L  276 (368)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~  276 (368)
                      .++....+ .|++|+.|..+.+||+|....    .........+..++++++-|++.-.++++-||+|.+=.++..   .
T Consensus       139 y~~~v~g~-~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  139 YCMDVSGN-RLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             EEEeccCC-EEEEeecCceEEEEEcccccc----hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence            88877543 888999999999999997644    122223345667999999998888999999999988555433   1


Q ss_pred             ccceeeeccc-----------eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          277 SHGGVLKGHK-----------LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       277 ~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .....++.|.           ...++|+|-.+.++||+.||.|.+||+.+.  +.+..+......|.+++|+.+|..||.
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch--hhhhhccCCCCceEEEEeccCCCeEEE
Confidence            1222333332           333667777889999999999999988776  667778777788999999999998886


Q ss_pred             CCc
Q 047325          346 TSS  348 (368)
Q Consensus       346 ~~~  348 (368)
                      ++.
T Consensus       292 a~s  294 (323)
T KOG1036|consen  292 ASS  294 (323)
T ss_pred             Eec
Confidence            653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.3e-30  Score=214.03  Aligned_cols=237  Identities=20%  Similarity=0.297  Sum_probs=201.3

Q ss_pred             cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccC-CCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325           41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKA-SSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      ..+.+.|+++.|+  |.+|++|..+|.|.|||..  +....+.+ |...|-+++|++..+.+|+.||.|..+|++..+..
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhh
Confidence            3347889999997  5599999999999999976  44566777 99999999999999999999999999999987654


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                      ...                               +.+|...|..++|++|+.++++|+.|+.+.|||....+++..+..|
T Consensus       294 ~~~-------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H  342 (484)
T KOG0305|consen  294 VST-------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH  342 (484)
T ss_pred             hhh-------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence            331                               3349999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeCCCC--eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEE
Q 047325          196 DDAVNSVVSSSEG--LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNF  269 (368)
Q Consensus       196 ~~~v~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i  269 (368)
                      ..+|.+++|+|-.  .||+|+  .|+.|++||...+.      .+ ........|..+.|++..+.|++  |..++.|.|
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------~i-~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l  415 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------RI-DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL  415 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------Ee-cccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence            9999999999975  888875  49999999998662      22 22345567999999999887776  456778999


Q ss_pred             EeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |+..+... ...+.+|...|+.  ++|||..+++|+.|.++++|++-..
T Consensus       416 w~~ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  416 WKYPSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             Eeccccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99998544 4788899999954  5689999999999999999987553

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.98  E-value=1.5e-29  Score=190.80  Aligned_cols=283  Identities=15%  Similarity=0.230  Sum_probs=217.4

Q ss_pred             eeccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCcc------------ee-----cccCCCCCeeEEEEe---CCE
Q 047325           38 GSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKE------------FC-----GFKASSGLVKAIVIS---GEK   94 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~------------~~-----~~~~~~~~v~~~~~~---~~~   94 (368)
                      .....|.+.|+++..+   +.++++|+.||.|.+||++..            .+     .-.+|.-.|..+.|-   ...
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            3456789999999987   559999999999999997531            11     124678889988886   668


Q ss_pred             EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEE
Q 047325           95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYT  171 (368)
Q Consensus        95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~  171 (368)
                      +.+++.|.+++|||.++.+....+.                                 ..+.|.+-+++|   ..-++++
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~  163 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAA  163 (397)
T ss_pred             eecccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEE
Confidence            8999999999999999887544433                                 446677777777   2347888


Q ss_pred             EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC---------Ccccccceeec
Q 047325          172 ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK---------GTKHSLAQTLL  240 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~  240 (368)
                      |..|-.|++-|+.+|...+.+.+|.+.|.++.|+|..  .|++|+.||.|++||+|....         ....+..+...
T Consensus       164 gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~  243 (397)
T KOG4283|consen  164 GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT  243 (397)
T ss_pred             ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence            8889999999999999999999999999999999988  899999999999999985421         12223334456


Q ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEE---EEE-EeCCCEEEEeeCCCeEEEEecC
Q 047325          241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAV---LCL-AAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~---~~~-~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .|.+.+..++|..++.++++.+.|..+++|+..++......+.  .|....   ..+ +.+...++---.++.+.++++-
T Consensus       244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~  323 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL  323 (397)
T ss_pred             cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence            7889999999999999999999999999999886643322211  111111   111 2234444444456889999876


Q ss_pred             CCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .+  ..+..+..|...|.+.++-|+-+            ..++|+.|+.|..|
T Consensus       324 sg--s~ir~l~~h~k~i~c~~~~~~fq------------~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  324 EG--SFVRRLSTHLKRINCAAYRPDFE------------QCFTGDMNGNIYMW  362 (397)
T ss_pred             Cc--eEEEeeecccceeeEEeecCchh------------hhhccccCCccccc
Confidence            66  77888999988999999999988            67788888887766

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=5.1e-30  Score=203.88  Aligned_cols=251  Identities=18%  Similarity=0.245  Sum_probs=203.2

Q ss_pred             CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           80 ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        80 ~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      .|.+.|+.+.+-   ...+++.+..+.+.|||.....-......                      ...+...+.+|.+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~----------------------~~~Pdl~L~gH~~e  179 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG----------------------ECRPDLRLKGHEKE  179 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc----------------------cCCCceEEEeeccc
Confidence            467777777665   56888899999999999876543222111                      11223456779888


Q ss_pred             EeEEEEcCC-CCEEEEEeCCCcEEEEEccCC-------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325          157 VSCMSLDQD-CGLLYTASWDRTFKVWRISDS-------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       157 v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~  226 (368)
                      -.++.|++. ...+++++.|+.|++||+...       .+...+.+|...|..++|++..  .+++++.|+.+.|||+|.
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~  259 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS  259 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence            889999984 448999999999999999653       2456788999999999999977  899999999999999996


Q ss_pred             CCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEe
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSG  302 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~  302 (368)
                      .    ..++......|.+.+.|++|+| ++..||+|+.|++|.+||+|+.......+.+|...|..+.+.   ...|+++
T Consensus       260 ~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS  335 (422)
T KOG0264|consen  260 N----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS  335 (422)
T ss_pred             C----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence            3    1245667788999999999999 667899999999999999999888888999999999777653   6789999


Q ss_pred             eCCCeEEEEecCCC------------ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          303 SADKTICVWRRDGA------------IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       303 ~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.|+.+.|||+..-            ..++++.-.||...|.++.|+|...           |.++|.++|+.+.||
T Consensus       336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-----------W~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-----------WTIASVAEDNILQIW  401 (422)
T ss_pred             ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-----------eEEEEecCCceEEEe
Confidence            99999999998532            2345677789999999999999999           688888888888887

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=200.40  Aligned_cols=281  Identities=22%  Similarity=0.338  Sum_probs=223.0

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce-------------------ecc-cCCCCCeeEEEEe--C
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF-------------------CGF-KASSGLVKAIVIS--G   92 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-------------------~~~-~~~~~~v~~~~~~--~   92 (368)
                      +..+..|.-+|.+++++++  +.++++.||+|.-|++..+.                   ... +.|...+.+++.+  +
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            5667889999999999877  99999999999999864221                   011 3788889999988  8


Q ss_pred             CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325           93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA  172 (368)
Q Consensus        93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  172 (368)
                      .||++|+.|..|.||+.++.+....                                +.+|.+.|.+++|-.....++++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~--------------------------------~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKV--------------------------------FKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhc--------------------------------ccccccceeeeeeecCccceeee
Confidence            8999999999999999998874333                                44599999999999988899999


Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV  251 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  251 (368)
                      +.|+.|++|++.....+.++.+|...|..+....-+ .+-+|+.|+++++|++...       ....+.++.+.+.|++|
T Consensus       263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence            999999999999999999999999999999877777 5555669999999999543       23456678889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccccceeeeccc-----------eEEE--EEEeCCCEEEEeeCCCeEEEEecCCC--
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK-----------LAVL--CLAAAGKLVFSGSADKTICVWRRDGA--  316 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~--  316 (368)
                      -. ...+++|+.+|.|.+|++.+.+.+......|.           ..+.  ++.+..+++++|+.+|.|++|.+..+  
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            85 46899999999999999987665544433332           1444  44468899999999999999998765  


Q ss_pred             ceeeeEeeeccccCeeEEEEecCCeeeecCCcc----eEEEEEeeC
Q 047325          317 IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC----AQRWIVYSG  358 (368)
Q Consensus       317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~----~~~w~l~sg  358 (368)
                      ...++..+. -.+-|++|+|+++|..+..+-+.    ++-|.+.++
T Consensus       415 ~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~  459 (479)
T KOG0299|consen  415 AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG  459 (479)
T ss_pred             ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence            344555554 66789999999999966555432    344444444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-30  Score=189.47  Aligned_cols=241  Identities=22%  Similarity=0.298  Sum_probs=191.0

Q ss_pred             ccCcCCcEEEEE--ecCCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325           40 LVREEGHIYSLA--ASKDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        40 ~~~h~~~i~~~~--~~~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~  108 (368)
                      -..|++.|....  |.|.+|||++.|++|+|+.+..     .+.++.+|.++|..++|.    |.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            457888888754  6699999999999999998753     356789999999999997    88999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      -++++-.....                              +..|...|++++|.|.  |-.|++++.||.|.+.+.+..
T Consensus        87 e~~g~w~k~~e------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~  136 (299)
T KOG1332|consen   87 EENGRWTKAYE------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS  136 (299)
T ss_pred             cCCCchhhhhh------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence            88874322221                              2239999999999985  568999999999999998754


Q ss_pred             ---eEEEEeecCCCceEEEEeCCC---C------------eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          187 ---KCLESVSAHDDAVNSVVSSSE---G------------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       187 ---~~~~~~~~~~~~v~~~~~~~~---~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                         ........|...|++++|.|.   |            .|++|+.|..|+||+....    .......+.+|.+.|+.
T Consensus       137 g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  137 GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRD  212 (299)
T ss_pred             CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhh
Confidence               233455679999999999875   1            5999999999999999864    33455668899999999


Q ss_pred             EEEcCCC----CEEEEecCCCcEEEEeCCCccccc--eeeeccc--eEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          249 LVVSSSR----SIVYCGSSDGLVNFWEREKQLSHG--GVLKGHK--LAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       249 ~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ++|.|.-    .++++++.||++.||..+......  ..+...+  ....++++.|++|+.++.|+.|.+|.-+
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999953    489999999999999876332221  2222223  3336677789999999999999999643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-30  Score=214.96  Aligned_cols=248  Identities=22%  Similarity=0.407  Sum_probs=198.6

Q ss_pred             CCEEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325           54 KDLLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      +++|+|||.||.|++|++...        ...++.|...|+.+...  ++.|++++.|-+|++|+...+.....      
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------  110 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------  110 (735)
T ss_pred             CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH------
Confidence            448999999999999987521        45678899999998886  77999999999999999887641111      


Q ss_pred             ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE-cCCCCEEEEEeCCCcEEEEEccCCe--EE--------EEe
Q 047325          124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL-DQDCGLLYTASWDRTFKVWRISDSK--CL--------ESV  192 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--~~--------~~~  192 (368)
                                              ..+..|.+-|.|+++ .++..++++||.|+.|.+||+.++.  .+        ..+
T Consensus       111 ------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen  111 ------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             ------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence                                    112239999999999 7788899999999999999999772  22        223


Q ss_pred             e-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325          193 S-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       193 ~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  270 (368)
                      . ++...|++++.++.+ .+++|+..+.+++||.++..+      ...+.+|...|..+..++||..++++++||+|++|
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence            3 788899999999999 899999999999999998743      56677999999999999999999999999999999


Q ss_pred             eCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          271 EREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       271 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      |+..+.++ ..+..|...+.++..  +-..+++|+.||.|..=|+.+.. +.. .+-....+|..+..+...
T Consensus       241 dLgqQrCl-~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~-~~t-lick~daPv~~l~~~~~~  309 (735)
T KOG0308|consen  241 DLGQQRCL-ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA-KST-LICKEDAPVLKLHLHEHD  309 (735)
T ss_pred             ecccccee-eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch-hhe-EeecCCCchhhhhhcccc
Confidence            99987666 557778877866654  56789999999999999988751 222 222344567777666433

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-28  Score=213.16  Aligned_cols=198  Identities=14%  Similarity=0.160  Sum_probs=147.1

Q ss_pred             eeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe--------EEEEeecCCCceEEEEeCCCC--eEEEEcCCC
Q 047325          149 LWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK--------CLESVSAHDDAVNSVVSSSEG--LIFTGSADG  217 (368)
Q Consensus       149 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg  217 (368)
                      .+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++.        ++..+.+|...|.+++|+|++  .+++++.|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            34569999999999996 7899999999999999997642        345678899999999999988  567899999


Q ss_pred             eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--E-----
Q 047325          218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--L-----  290 (368)
Q Consensus       218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~-----  290 (368)
                      .|++||++....      ...+. +...|.+++|+|+|++|++++.|+.|++||++++... ..+.+|...+  .     
T Consensus       149 tIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~  220 (568)
T PTZ00420        149 FVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWID  220 (568)
T ss_pred             eEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEee
Confidence            999999986532      22232 4567999999999999999999999999999987665 4566776532  1     


Q ss_pred             EEEeCCCEEEEeeCCC----eEEEEecCCCceeeeEe--eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325          291 CLAAAGKLVFSGSADK----TICVWRRDGAIHTCLSV--LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       291 ~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v  364 (368)
                      .+++++.+|++++.|+    .|+|||++... .++..  +..+.+.+......+++.+            +++|+.|++|
T Consensus       221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l------------~lsGkGD~tI  287 (568)
T PTZ00420        221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLI------------YLIGKGDGNC  287 (568)
T ss_pred             eEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCE------------EEEEECCCeE
Confidence            2346888999887764    79999998532 33333  3333444444444555773            4455555555


Q ss_pred             ccC
Q 047325          365 DDV  367 (368)
Q Consensus       365 ~i~  367 (368)
                      |+|
T Consensus       288 r~~  290 (568)
T PTZ00420        288 RYY  290 (568)
T ss_pred             EEE
Confidence            554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=185.40  Aligned_cols=234  Identities=20%  Similarity=0.356  Sum_probs=193.5

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ..+++|.+.|.+++|+  |.+|++|+.|+++.+|+++..+.....                              .+.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------------------------------~~~gh   63 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------------------------------VYRGH   63 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------------------------------cccCC
Confidence            4567899999999998  999999999999999999877432211                              23459


Q ss_pred             CCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          154 SDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       154 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .+.|-.++|+| +...|++++.|..|++||.++++++..+....+.+ -+.|+|+| ++++++.|..|.+.|.+....  
T Consensus        64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~--  140 (313)
T KOG1407|consen   64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI--  140 (313)
T ss_pred             CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce--
Confidence            99999999988 56689999999999999999999999988665555 46788888 999999999999999987532  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTIC  309 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~  309 (368)
                           .........+..++|+.++++++.....|+|.|.....- ++...+..|+...+|+.  |+|+++|+|+.|-.+.
T Consensus       141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceee
Confidence                 222334456788899988888888888899999998864 44578889998886665  6799999999999999


Q ss_pred             EEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcce
Q 047325          310 VWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCA  350 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~  350 (368)
                      +||++..  .+++.+..+.-||..|+|+.||++||+++.+.
T Consensus       215 LWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  215 LWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             ccChhHh--hhheeeccccCceEEEEeccCcceeeccCccc
Confidence            9998876  78889999999999999999999877776553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.2e-29  Score=198.24  Aligned_cols=252  Identities=20%  Similarity=0.258  Sum_probs=202.8

Q ss_pred             ccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEe
Q 047325           26 QFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      ...-+.+.++.+..+.||.-.|+.+.++++  .+++++.|..|+||...  ........|..+|+.+...  |+||++++
T Consensus       243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs  322 (506)
T KOG0289|consen  243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS  322 (506)
T ss_pred             eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec
Confidence            344567889999999999999999999977  88999999999999876  3455678899999999887  99999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .||+..+.|++++.........                              ...-.+++.+|+|||..|.+|..||.|+
T Consensus       323 ~d~~w~Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  323 NDGTWAFSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             CCceEEEEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEE
Confidence            9999999999988753322210                              0223589999999999999999999999


Q ss_pred             EEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCE
Q 047325          180 VWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSI  257 (368)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  257 (368)
                      +||+.++..+..|.+|.++|..+.|+.+| +|++++.|+.|++||+|....      ...+ ......+.++.|.+.|.+
T Consensus       373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN------FKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc------cceeeccccccceeEEEcCCCCe
Confidence            99999999999999999999999999999 999999999999999997532      1111 122236999999999999


Q ss_pred             EEEecCCCcEEEEeCCCc-cccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325          258 VYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~  313 (368)
                      |+.++.|=.|++++-.+. .........|.+...++.+  ..+++++++.|..++++.+
T Consensus       447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999988777777764432 2222344456555555554  5789999999999888753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-29  Score=199.93  Aligned_cols=247  Identities=17%  Similarity=0.273  Sum_probs=201.0

Q ss_pred             cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           73 KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      +..+.+..|...|.-+.|+  |.|||+++.|.+..+|++.......                             -...+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k-----------------------------l~~tl  265 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK-----------------------------LKKTL  265 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee-----------------------------eeeee
Confidence            3455678899999999998  8999999999999999987665311                             12345


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .+|..+|..+.|+||.++|++|+.|..+.+||+.+|.....++. +...+.+++|.||| .+++|+.|+.+..||++.. 
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-  344 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-  344 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-
Confidence            67999999999999999999999999999999999998887763 46789999999999 9999999999999999864 


Q ss_pred             CCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCe
Q 047325          229 KGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT  307 (368)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  307 (368)
                            ......+. ...|.+++..+||+++++.+.|..|++|+.+...........+.....+++-+++++++--.+..
T Consensus       345 ------~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe  418 (519)
T KOG0293|consen  345 ------ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE  418 (519)
T ss_pred             ------hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe
Confidence                  23333332 24589999999999999999999999999987655544445566666788889999999999999


Q ss_pred             EEEEecCCCceeeeEeeeccccC--eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          308 ICVWRRDGAIHTCLSVLTGHTGP--VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +++||++..  ..+..+.||...  |..-+|-.-...           ++++||+|+.|+|||
T Consensus       419 i~LWDl~e~--~lv~kY~Ghkq~~fiIrSCFgg~~~~-----------fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  419 IHLWDLEEN--KLVRKYFGHKQGHFIIRSCFGGGNDK-----------FIASGSEDSKVYIWH  468 (519)
T ss_pred             eEEeecchh--hHHHHhhcccccceEEEeccCCCCcc-----------eEEecCCCceEEEEE
Confidence            999999854  778888888765  333344433211           789999999999998

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=213.06  Aligned_cols=287  Identities=16%  Similarity=0.191  Sum_probs=204.9

Q ss_pred             EEEecCC--EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe-------------CCEEEEEeCCCeEEEEe
Q 047325           49 SLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS-------------GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        49 ~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~-------------~~~l~s~~~dg~i~vw~  108 (368)
                      ++.|++.  .|.+.-.|..++|||+...     ...+..|...|..+..-             ...+++++.|++|++|+
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            4567744  8888889999999998743     33455677777766431             45799999999999999


Q ss_pred             ecCCCccccccCCcccc-ceeeeeccCCCCcee-----EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          109 ISPKNQSVHKRAGTLPT-LKDIFKSSIKPSNYI-----EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      ++............... ...+. ........+     .+.........+....+.+++++|++++|++|..-|+|++||
T Consensus       409 l~~ctnn~vyrRNils~~l~ki~-y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRNILSANLSKIP-YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             cccccccceeecccchhhhhcCc-cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            98732211111100000 00000 000000000     001111122234567899999999999999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc---------------
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE---------------  243 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------  243 (368)
                      +...+.+..+.+|+..|.|+.++...    +|++++.|+-|++||...+-     .+...+.+|.               
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCce
Confidence            99999999999999999999998643    89999999999999986432     1222333333               


Q ss_pred             ----------------------------------ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccce
Q 047325          244 ----------------------------------CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKL  287 (368)
Q Consensus       244 ----------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~  287 (368)
                                                        ..+..++..|..+++++++.|..|+|||+++++....+..  +|.+
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence                                              3455666667778999999999999999998877644433  3433


Q ss_pred             EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          288 AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       288 ~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ..  +.+.|.|.||++...|.++.++|+-++  +++.+..+|.+.|+.+.|.+|-+.|
T Consensus       643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sg--EcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSG--ECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             ceEEEEECCCccEEEEeecCCceEEEEeccc--hhhhhhcCcchheeeeeecccchhh
Confidence            33  456688999999999999999999887  8999999999999999999999843

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-27  Score=173.83  Aligned_cols=281  Identities=19%  Similarity=0.220  Sum_probs=216.9

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-------------c----eecccCCCCCeeEEEEe--CCEEEEEe
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-------------E----FCGFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-------------~----~~~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      ...+..|.+++|.|.  +.++|+..++.||-....             +    ...-+.|.+.|+|.+|+  |+.+++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            345677999999865  889999999999874210             0    12346799999999999  99999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC----CCEEEEEe-C
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD----CGLLYTAS-W  174 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~  174 (368)
                      .|.+|++..++.......-                           ....+.-|.+.|..++|..+    +..|++++ .
T Consensus       109 ndk~ik~l~fn~dt~~~~g---------------------------~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATG---------------------------HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             CCceEEEEecccccccccC---------------------------cceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            9999999988765432211                           11223449999999999653    45677665 3


Q ss_pred             CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeecc-------ccccEE
Q 047325          175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-------QECAVT  247 (368)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~i~  247 (368)
                      |..|++-|..+|+..+.+.+|.+.|.++.--..-.+++|+.|.+|++||++.+.      ++..+..       ....|.
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~------~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS------CVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc------eeeeccCcccCCCcccceeE
Confidence            667777888999999999999999988843333399999999999999998763      2322221       236799


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC--ceeeeEe
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA--IHTCLSV  323 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~  323 (368)
                      +++..|.|++|++|-.|....+||++.+..+ ..+..|...+.|  |+|...|+++++.|..|++-|+...  ...++..
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v  314 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV  314 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence            9999999999999999999999999987666 566778877755  5567889999999999999998653  2234455


Q ss_pred             eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ...|...+..+.|+|..-            .+.+.+.|+++-+|
T Consensus       315 v~ehkdk~i~~rwh~~d~------------sfisssadkt~tlw  346 (350)
T KOG0641|consen  315 VAEHKDKAIQCRWHPQDF------------SFISSSADKTATLW  346 (350)
T ss_pred             EEeccCceEEEEecCccc------------eeeeccCcceEEEe
Confidence            667999999999999987            56777778877776

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-30  Score=213.04  Aligned_cols=233  Identities=24%  Similarity=0.384  Sum_probs=190.7

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      +++|++|+.||.|++|++..........                          ....+..|.+.|+.+....+++.|++
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS   90 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLIS   90 (735)
T ss_pred             CceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEE
Confidence            6789999999999999987654321111                          01122339999999999999999999


Q ss_pred             EeCCCcEEEEEccCC--eEEEEeecCCCceEEEEe-CCCC-eEEEEcCCCeEEEEEcCCCCC--C--cccccceeec-cc
Q 047325          172 ASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVS-SSEG-LIFTGSADGTVKVWKREQHGK--G--TKHSLAQTLL-KQ  242 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~~~~-~~  242 (368)
                      ++.|-+|++|+...+  -++.++..|...|.|++. .++. .+++|+-|+.|.+||++.+..  .  ........+. ++
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            999999999999877  578889999999999999 5566 999999999999999986522  0  0111122222 78


Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      ..+|.+++..+.+..+++|+.++.+++||.++.++. ..+.+|...|.+  +..||..+++++.||+|++||+...  ++
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--rC  247 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--RC  247 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccce-eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--ce
Confidence            889999999999999999999999999999998776 455699887755  4568999999999999999988665  89


Q ss_pred             eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccc
Q 047325          321 LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDD  365 (368)
Q Consensus       321 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~  365 (368)
                      +.++..|...|+++..+|+-.            .+++|+.||.|.
T Consensus       248 l~T~~vH~e~VWaL~~~~sf~------------~vYsG~rd~~i~  280 (735)
T KOG0308|consen  248 LATYIVHKEGVWALQSSPSFT------------HVYSGGRDGNIY  280 (735)
T ss_pred             eeeEEeccCceEEEeeCCCcc------------eEEecCCCCcEE
Confidence            999999999999999999888            678888888764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.1e-29  Score=200.39  Aligned_cols=238  Identities=21%  Similarity=0.330  Sum_probs=192.4

Q ss_pred             eeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEee
Q 047325           37 IGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~  109 (368)
                      .+++....+.|.+++|-  |.+||.|...|.|+|+|..+  .+..+.+|..+|..+.|.   +..+++|+.|+.+++||+
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            34455567778888885  77999999999999999655  466889999999999998   668899999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC-e
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS-K  187 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-~  187 (368)
                      .+... .                               ..+.+|++.|.|.+++|. +..+++|+.||.|++||+++. .
T Consensus       141 s~a~v-~-------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~  188 (487)
T KOG0310|consen  141 STAYV-Q-------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS  188 (487)
T ss_pred             CCcEE-E-------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence            87752 1                               123459999999999995 558999999999999999987 5


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .+.++. |..+|..+.+.|.| .+++++ ...+++||+..+++     .......|...|+|+++..++..|++|+-|+.
T Consensus       189 ~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  189 RVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             eeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            666665 89999999999998 555544 66899999986654     44455569999999999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          267 VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      +++||+.+-+.........+.-.++++|+++.++.|..||.+.+=+.
T Consensus       262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence            99999776555433333333334667789999999999999877644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.6e-29  Score=198.69  Aligned_cols=257  Identities=22%  Similarity=0.314  Sum_probs=203.1

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      +..+..|.-+|.+++++  +.+.++++.||+|.-|++.++............     ...     .+......+    .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-----~k~-----~~~~~k~~r----~~  200 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-----LKS-----HGNPLKESR----KG  200 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-----hhh-----ccCCCCccc----cc
Confidence            45567899999999998  669999999999999999988754222211000     000     000000000    25


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |...+.+++.++|+++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|+++..    
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----  276 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----  276 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----
Confidence            99999999999999999999999999999999999999999999999999998766 9999999999999999765    


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV  310 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i  310 (368)
                        ..+..+.+|++.|..+....-++.+-+|+.|+++++|++.....  ..+.++...+-|+++ +...+++|+.||.|.+
T Consensus       277 --s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  277 --SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL  352 (479)
T ss_pred             --HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence              45778899999999999988888888899999999999965433  467788878877776 7889999999999999


Q ss_pred             EecCCCceeeeEeee-cc-----------ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          311 WRRDGAIHTCLSVLT-GH-----------TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       311 w~~~~~~~~~~~~~~-~h-----------~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |++...  +++++.. +|           ...|++++..|...            ++++|+.+|.||+|
T Consensus       353 Ws~~KK--kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd------------L~asGS~~G~vrLW  407 (479)
T KOG0299|consen  353 WSLLKK--KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD------------LLASGSWSGCVRLW  407 (479)
T ss_pred             eeeccc--CceeEeeccccccCCccccccccceeeeEecccCc------------eEEecCCCCceEEE
Confidence            988765  3343331 12           22789999999999            56666667776666

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=6.4e-28  Score=179.38  Aligned_cols=237  Identities=19%  Similarity=0.237  Sum_probs=198.7

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+++|..+++.+.++  |++|++++.|.+..+|--.+++                                +...+.||.
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--------------------------------rlGty~GHt   52 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--------------------------------RLGTYDGHT   52 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--------------------------------eeeeecCCC
Confidence            468899999999999  9999999999999999877665                                455677899


Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-----CCCeEEEEEcCCCC
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-----ADGTVKVWKREQHG  228 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-----~dg~i~i~d~~~~~  228 (368)
                      +.|.|+..+.+.+++++|+.|.++++||+++|+.+..++ ...+|..+.|+++| +++...     ..+.|.++|++...
T Consensus        53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            999999999999999999999999999999999999997 46789999999999 333332     34679999998543


Q ss_pred             C-CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCC
Q 047325          229 K-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSAD  305 (368)
Q Consensus       229 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d  305 (368)
                      . .....+...+..+...++.+-|.|-+++|++|.+||.|.+||.++++........|...|  +.+++|..++++++.|
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence            2 122334666777889999999999999999999999999999999888777777777777  5566789999999999


Q ss_pred             CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      .+-++||+.+.  ..++++. ...||++.+++|-...+..+.+.
T Consensus       212 ttakl~D~~tl--~v~Kty~-te~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  212 TTAKLVDVRTL--EVLKTYT-TERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             ccceeeeccce--eeEEEee-ecccccceecccccceEEecCCc
Confidence            99999998876  6666665 57799999999988765544443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=211.99  Aligned_cols=273  Identities=16%  Similarity=0.244  Sum_probs=203.8

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCcc----ee--cccC---CCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FC--GFKA---SSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~--~~~~---~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ...+++.+++  .++.++. ..++|+.....    .+  .++.   -...+..+.|.   .++|++++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            3445555544  6666654 36777764421    11  1111   11234455555   77999999999999999986


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLE  190 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (368)
                      ....                             .....|..|...++++.|++ ...+|++|+.||+|++||++..+...
T Consensus       120 ~~rn-----------------------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen  120 SIRN-----------------------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             cccc-----------------------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            3110                             01123344999999999998 45689999999999999999999999


Q ss_pred             EeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          191 SVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       191 ~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ++.+....|+.+.|+|..  +++++...|.+.+||+|...+     +...+..|.++|.++.|+|++.+||+|+.|+.|+
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence            999988999999999865  999999999999999997654     7778889999999999999999999999999999


Q ss_pred             EEeCCCccccceeeeccceEE--EEEEeC-CCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          269 FWEREKQLSHGGVLKGHKLAV--LCLAAA-GKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      |||....+......-....++  +.+.|. ...|++++  .|-.|+|||+..+ ..+..++..|...++.++|...... 
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~-  323 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRI-  323 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCce-
Confidence            999986544322222223334  455565 34567665  4888999999765 4667888999999999999763332 


Q ss_pred             ecCCcceEEEEEeeCCcccccc
Q 047325          344 SSTSSCAQRWIVYSGSLDKSDD  365 (368)
Q Consensus       344 ~~~~~~~~~w~l~sg~~D~~v~  365 (368)
                                .+.+++.|++|.
T Consensus       324 ----------~l~s~sKD~tv~  335 (839)
T KOG0269|consen  324 ----------NLWSCSKDGTVL  335 (839)
T ss_pred             ----------eeEeecCccHHH
Confidence                      688999998874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.6e-29  Score=184.38  Aligned_cols=242  Identities=20%  Similarity=0.290  Sum_probs=188.7

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      ..|...|..+..+  |.+|+|++.|++|+|+..+++...                             .....+.||.++
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-----------------------------~ll~~L~Gh~GP   58 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-----------------------------KLLAELTGHSGP   58 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----------------------------eeeeEecCCCCC
Confidence            4677777776655  999999999999999999877631                             123346679999


Q ss_pred             EeEEEEcC--CCCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCC
Q 047325          157 VSCMSLDQ--DCGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       157 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |..++|..  -|.+|++++.||.|.||.-..++  .......|...|++++|.|.+   .|++++.||.|.+.+.+..+.
T Consensus        59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence            99999965  78999999999999999987774  345566799999999999987   899999999999999987622


Q ss_pred             CcccccceeeccccccEEEEEEcCC---C-----------CEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEE-
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSS---R-----------SIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLA-  293 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~-  293 (368)
                         ....+....|.-.+++++|.|.   |           +.|++|+.|..|+||+..... .....+.+|...+..++ 
T Consensus       139 ---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  139 ---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             ---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence               1233445678899999999985   4           579999999999999988743 23345889999885554 


Q ss_pred             -eC----CCEEEEeeCCCeEEEEecCCCc-eeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          294 -AA----GKLVFSGSADKTICVWRRDGAI-HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       294 -~~----~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                       |.    ..+|++++.||++.||..+... .-....++....++..+.|+..|.+|+.++++.++
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV  280 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence             43    4589999999999999776321 11223344467789999999999987776666555

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=1.3e-28  Score=198.46  Aligned_cols=271  Identities=17%  Similarity=0.306  Sum_probs=211.9

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee-----cc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC-----GF--KASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~-----~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      .....|..-|.++..+..  .++||+. |-|+|||+.....     .+  ......|.++...  |+.|++|+.-.++.|
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence            345567777888888744  8888886 7799999875422     11  1234456665554  889999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      ||+.............                              ..-....++.+||.+..+++..||.|.|||+...
T Consensus       492 WDLAapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             eeccCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence            9998776544333211                              2234567899999999999999999999999999


Q ss_pred             eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325          187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG  265 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  265 (368)
                      ..++.|++|...+.||.++++| .|.+|+-|.+|+.||++...+       .........|.++-++|++.+|+.|-+++
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-------lqqhdF~SQIfSLg~cP~~dWlavGMens  614 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-------LQQHDFSSQIFSLGYCPTGDWLAVGMENS  614 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-------hhhhhhhhhheecccCCCccceeeecccC
Confidence            9999999999999999999999 999999999999999997632       11223457799999999999999999999


Q ss_pred             cEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          266 LVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      .+.+.......+  ..+.-|...|+++.  +.|+++++.+.|+.+..|...-+  ..++..+ -..+|.++..+.|.+  
T Consensus       615 ~vevlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG--asiFqsk-E~SsVlsCDIS~ddk--  687 (705)
T KOG0639|consen  615 NVEVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK-ESSSVLSCDISFDDK--  687 (705)
T ss_pred             cEEEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccc--cceeecc-ccCcceeeeeccCce--
Confidence            999888776544  45667888886654  57999999999999999965544  5555544 467899999999999  


Q ss_pred             ecCCcceEEEEEeeCCcccc
Q 047325          344 SSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       344 ~~~~~~~~~w~l~sg~~D~~  363 (368)
                                +++|||.|+.
T Consensus       688 ----------yIVTGSGdkk  697 (705)
T KOG0639|consen  688 ----------YIVTGSGDKK  697 (705)
T ss_pred             ----------EEEecCCCcc
Confidence                      5666666644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1e-27  Score=181.28  Aligned_cols=242  Identities=17%  Similarity=0.212  Sum_probs=182.6

Q ss_pred             ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      ....-......|.+|+|+   ...+++++.||+||+|+++.........                              .
T Consensus        19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka------------------------------~   68 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA------------------------------Q   68 (347)
T ss_pred             ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh------------------------------h
Confidence            333445567789999998   4577799999999999998742211111                              1


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~  227 (368)
                      ..|.++|.+++|+.+|..+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+..   .|++|+.|.+|+.||.|..
T Consensus        69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            1289999999999999999999999999999999995 55677899999999997765   7999999999999999975


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee---eccceEEEEEEeCCCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL---KGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      ..      +..+. ....+.++..  ...+++.+..+..|.+|+++++.......   .....+.+++..|.+..+.|+-
T Consensus       148 ~p------v~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  148 NP------VATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             Ce------eeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence            32      33222 3345555554  34678889999999999998654332221   2234445556667777799999


Q ss_pred             CCeEEEEecCCCceeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|.+.|..++.+....-.+++.|..         +|++|+|+|...            .|+|.|.||++..|
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg------------tlvTaGsDGtf~FW  278 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG------------TLVTAGSDGTFSFW  278 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc------------eEEEecCCceEEEe
Confidence            9999999998764455566776763         588999999888            67788888887766

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.3e-29  Score=190.93  Aligned_cols=251  Identities=20%  Similarity=0.306  Sum_probs=199.4

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ....+.|..|+  |+||++|+.||-|.+|+..+++..........                        ..+.-+...|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------------------d~fMMmd~aVl  267 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------------------DNFMMMDDAVL  267 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------------------cceeecccceE
Confidence            44557777887  89999999999999999999876544333221                        12334889999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      |+.|+.|...+++|+.||.|++|.+++|.+++.+. +|...|+|+.|+.|+ .+++++.|.++++.-+..+      +++
T Consensus       268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~L  341 (508)
T KOG0275|consen  268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KCL  341 (508)
T ss_pred             EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hhH
Confidence            99999999999999999999999999999999997 799999999999999 9999999999999999877      468


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEEEEEEe---CCCEEEEeeCCCeEEEEe
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAA---AGKLVFSGSADKTICVWR  312 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~  312 (368)
                      ..+.+|.+.|+...|.++|+.+++++.||+|++|+.++.++...... +...++..+.+   +...++++...++|+|-+
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            89999999999999999999999999999999999998776643332 23444544443   677889999999999998


Q ss_pred             cCCCceeeeEeeec---cccCeeEEEEecCCeeeecCCcc--eEEEEEeeCCccccc
Q 047325          313 RDGAIHTCLSVLTG---HTGPVKCLAVEEDRDSSSSTSSC--AQRWIVYSGSLDKSD  364 (368)
Q Consensus       313 ~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~--~~~w~l~sg~~D~~v  364 (368)
                      +..   +.++.+..   ..+...+...+|.|.++-....+  ..-+.+.+|..+.++
T Consensus       422 ~qG---QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  422 MQG---QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             ccc---eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence            765   45555532   33456677899999976555443  333455566655543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=198.39  Aligned_cols=245  Identities=16%  Similarity=0.219  Sum_probs=184.5

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+++|+..|.+++++  |.+|++|+.|.+|++||+..............                           ..
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~---------------------------P~  212 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ---------------------------PC  212 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC---------------------------cc
Confidence            33578899999999998  88999999999999999987654332211111                           11


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE------------EeecCCCceEEEEeCCCC--eEEEEcCCCe
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE------------SVSAHDDAVNSVVSSSEG--LIFTGSADGT  218 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~  218 (368)
                      ....|++++|++.+..|++.+.....+|+|-...+...            .-++|...++|.+|+|..  .+++++.||+
T Consensus       213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt  292 (641)
T KOG0772|consen  213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT  292 (641)
T ss_pred             cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence            45678999999999999999988999999964433322            235788899999999988  8999999999


Q ss_pred             EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc--cceeeeccce----EEEEE
Q 047325          219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS--HGGVLKGHKL----AVLCL  292 (368)
Q Consensus       219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~----~~~~~  292 (368)
                      +++||+................+..-+++.++|+|+++.+|+|+.||.|.+|+..+...  .......|..    ..+.|
T Consensus       293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence            99999987643222111222234556789999999999999999999999999864322  2223345544    44667


Q ss_pred             EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc--ccCeeEEEEecCCeeeecCC
Q 047325          293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH--TGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~  347 (368)
                      +++|++|++-+.|+++++||++..+ +++....+-  .-+-+.++|||+.+++.++.
T Consensus       373 S~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  373 SYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             ccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecc
Confidence            7799999999999999999998753 455555443  34578999999999887764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.8e-27  Score=177.75  Aligned_cols=249  Identities=16%  Similarity=0.226  Sum_probs=190.1

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      .+|..-|.++.|+  |+++++|+.|++|+|||.+........                            ...+..|.+.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~----------------------------Ts~Wrah~~S   61 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC----------------------------TSSWRAHDGS   61 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE----------------------------eeeEEecCCc
Confidence            4688889999988  999999999999999998655432221                            2345669999


Q ss_pred             EeEEEEcC--CCCEEEEEeCCCcEEEEEccC---------CeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEE
Q 047325          157 VSCMSLDQ--DCGLLYTASWDRTFKVWRISD---------SKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVW  222 (368)
Q Consensus       157 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~  222 (368)
                      |..+.|.+  -|+.+++++.|+++.||.=..         -....++......|+++.|.|..   +|++++.||.+|||
T Consensus        62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            99999965  588999999999999997521         12345666677899999999975   89999999999999


Q ss_pred             EcCCCCCCcccccceeec-------cccccEEEEEEcCC---CCEEEEecCC-----CcEEEEeCCCcc---ccceeeec
Q 047325          223 KREQHGKGTKHSLAQTLL-------KQECAVTALVVSSS---RSIVYCGSSD-----GLVNFWEREKQL---SHGGVLKG  284 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~  284 (368)
                      +.-.........+...+.       .+..+..|+.|+|.   ..+|+.|+.+     +.++||......   .....+.+
T Consensus       142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence            986654444444433333       46677889999873   4688888876     478898866432   22345568


Q ss_pred             cceEEEEEE--eC----CCEEEEeeCCCeEEEEecCCC------------------ceeeeEeeeccccCeeEEEEecCC
Q 047325          285 HKLAVLCLA--AA----GKLVFSGSADKTICVWRRDGA------------------IHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       285 ~~~~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      |..+|.+++  |+    ..+|++++.|| |+||++...                  .-+.+..+..|.++|..+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            888886655  43    45899999999 999998631                  124456678999999999999999


Q ss_pred             eeeecCCcceEEEEEeeCCcccccccCC
Q 047325          341 DSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      .            .|.+.|.||+||+|.
T Consensus       301 t------------iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  301 T------------ILSSTGDDGCVRLWK  316 (361)
T ss_pred             e------------EEeecCCCceeeehh
Confidence            9            789999999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.5e-28  Score=193.20  Aligned_cols=240  Identities=21%  Similarity=0.290  Sum_probs=190.6

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-C-CEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-G-EKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-~-~~l~s~~~dg~i~vw  107 (368)
                      ..++.+|.|-.+.|+++.|+.+  .+++++.|+.+++|++..  ...++.+|...|+++.|. + ..+++|+.|.+|+.|
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            5678889999999999999854  888999999999999874  466899999999999998 3 349999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |+....+.....                                 ..+.+..|...  ...+++|-.|+.|++||.++..
T Consensus       289 Dl~k~~C~kt~l---------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~  333 (459)
T KOG0288|consen  289 DLQKAYCSKTVL---------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD  333 (459)
T ss_pred             hhhhhheecccc---------------------------------ccccccceEec--ceeeeecccccceEEEeccCCc
Confidence            998865433332                                 22344555554  4578899999999999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      +....+.+. .|+++..++++ .+.+++.|..+.+.|+++..-..........  .....+.+.|+|++.|+++|+.||.
T Consensus       334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--~asDwtrvvfSpd~~YvaAGS~dgs  410 (459)
T KOG0288|consen  334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--CASDWTRVVFSPDGSYVAAGSADGS  410 (459)
T ss_pred             eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc--cccccceeEECCCCceeeeccCCCc
Confidence            999998765 89999999999 8888899999999999976431111111111  2234889999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccce-EEEEEEe--CCCEEEEeeCCCeEEEE
Q 047325          267 VNFWEREKQLSHGGVLKGHKL-AVLCLAA--AGKLVFSGSADKTICVW  311 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~~~dg~i~iw  311 (368)
                      |+||++.+++........+.. .|++++|  .|..|++++.++.+.+|
T Consensus       411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999987766444333333 4666555  68999999999999999

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=189.92  Aligned_cols=247  Identities=16%  Similarity=0.207  Sum_probs=192.9

Q ss_pred             cccccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcce-ecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           27 FEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-CGFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      ...++.+.....++..|.+.|..|+++.+.+++++.|.+|+.|...... .++. -...+..+.-.  ++.++|++.  .
T Consensus        92 kiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~  168 (433)
T KOG0268|consen   92 KIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTIL-GKSVYLGIDHHRKNSVFATCGE--Q  168 (433)
T ss_pred             EEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeee-ccccccccccccccccccccCc--e
Confidence            3456777888899999999999999999999999999999999876532 2222 23344455544  667888875  5


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEE
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWR  182 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd  182 (368)
                      |.|||.+...+......                                -.+.|.++.|+|.. ..|++|+.|+.|.+||
T Consensus       169 i~IWD~~R~~Pv~smsw--------------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSW--------------------------------GADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             eeecccccCCccceeec--------------------------------CCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            89999987665444433                                45678999999954 5777788999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ++++.+++.+. -...-+.|+|+|++ .+++|++|..++.||++....     ++....+|.+.|..++|+|.|+-+++|
T Consensus       217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             cccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcc-----cchhhcccceeEEEeccCCCcchhccc
Confidence            99999988765 34456789999977 889999999999999996643     677788999999999999999999999


Q ss_pred             cCCCcEEEEeCCCcccccee--eeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          262 SSDGLVNFWEREKQLSHGGV--LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +.|.+|+||..+.+......  ..-.......++.|.+++++||+|+.|++|.-.
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            99999999998865433211  111222334556699999999999999999753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-27  Score=189.62  Aligned_cols=265  Identities=21%  Similarity=0.313  Sum_probs=207.1

Q ss_pred             EccCC-CcEEEEcCCcce--ecccCC-CCCeeEE-EEeCCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           59 TGSDS-KNIRVWKNLKEF--CGFKAS-SGLVKAI-VISGEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        59 s~~~d-g~i~iw~~~~~~--~~~~~~-~~~v~~~-~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      +++.| .++.+||+.++.  ..+++- ...-.++ ...+++++++.. -..|.+|.+..........             
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-------------   78 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI-------------   78 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc-------------
Confidence            44444 459999988653  334432 1111112 123567777654 4468899887665433111             


Q ss_pred             cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF  211 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  211 (368)
                                         --.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|+
T Consensus        79 -------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii  139 (476)
T KOG0646|consen   79 -------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII  139 (476)
T ss_pred             -------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence                               156789999999999999999899999999999999999999999999999999999 999


Q ss_pred             EEcCCCeEEEEEcCCC---CCCcccccceeeccccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceeeeccc
Q 047325          212 TGSADGTVKVWKREQH---GKGTKHSLAQTLLKQECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK  286 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  286 (368)
                      +|+.||.|.+|++...   .......+...+..|.-+|+.+...+.  ..+|++++.|.++++||+..+..+......-.
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s  219 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS  219 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc
Confidence            9999999999987432   122244567788899999999998775  35899999999999999999988877777777


Q ss_pred             eEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--------------eeeeEeeecccc--CeeEEEEecCCeeeecCCcce
Q 047325          287 LAVLCLAAAGKLVFSGSADKTICVWRRDGAI--------------HTCLSVLTGHTG--PVKCLAVEEDRDSSSSTSSCA  350 (368)
Q Consensus       287 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~  350 (368)
                      ...+.++|-++.+++|+.+|.|.+.++....              ...+..+.+|.+  +|+|++.+-||.         
T Consensus       220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt---------  290 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT---------  290 (476)
T ss_pred             ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc---------
Confidence            7778888999999999999999998874322              234566778988  999999999999         


Q ss_pred             EEEEEeeCCcccccccC
Q 047325          351 QRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       351 ~~w~l~sg~~D~~v~i~  367 (368)
                         +|++|+.||+|+||
T Consensus       291 ---lLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  291 ---LLLSGDEDGKVCVW  304 (476)
T ss_pred             ---EEEeeCCCCCEEEE
Confidence               78888888888888

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.7e-27  Score=177.79  Aligned_cols=259  Identities=18%  Similarity=0.295  Sum_probs=190.8

Q ss_pred             cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325           41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~  108 (368)
                      .+|.+-|.++.|+  |+.+|||+.|++|+|||....      ....+.|.+.|..+.|.    |+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4788999999886  889999999999999996532      33567899999999997    89999999999999998


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      -...+......                       +-.+...+......|+++.|.|  -|-.+++++.||.++||+....
T Consensus        90 E~~~~~~~~~~-----------------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   90 EQEKSEEAHGR-----------------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             ecccccccccc-----------------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            65222111000                       0112233445778999999999  4668999999999999987543


Q ss_pred             e------EEEEee-------cCCCceEEEEeCCCC----eEEEEcCC-----CeEEEEEcCCCCCCcccccceeeccccc
Q 047325          187 K------CLESVS-------AHDDAVNSVVSSSEG----LIFTGSAD-----GTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       187 ~------~~~~~~-------~~~~~v~~~~~~~~~----~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      -      ...+++       .+..+..|+.|+|..    +|++|+.+     +.++||......  .+......+..|..
T Consensus       147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~d  224 (361)
T KOG2445|consen  147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTD  224 (361)
T ss_pred             cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCC
Confidence            2      222232       456778899999865    67777665     489999887553  23344566779999


Q ss_pred             cEEEEEEcCC----CCEEEEecCCCcEEEEeCCCcc-------------------ccceeeeccceEEEEEEe--CCCEE
Q 047325          245 AVTALVVSSS----RSIVYCGSSDGLVNFWEREKQL-------------------SHGGVLKGHKLAVLCLAA--AGKLV  299 (368)
Q Consensus       245 ~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~~~~--~~~~l  299 (368)
                      +|+.++|.|+    -.+||+++.|| |+||.++...                   .....+..|...+-.+.+  .|..|
T Consensus       225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL  303 (361)
T KOG2445|consen  225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL  303 (361)
T ss_pred             cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence            9999999995    35899999999 9999987311                   122345678888866666  49999


Q ss_pred             EEeeCCCeEEEEecCC-CceeeeEeee
Q 047325          300 FSGSADKTICVWRRDG-AIHTCLSVLT  325 (368)
Q Consensus       300 ~~~~~dg~i~iw~~~~-~~~~~~~~~~  325 (368)
                      .+.+.||.||+|...- ...++...++
T Consensus       304 sStGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             eecCCCceeeehhhhhhhhheeeeEEe
Confidence            9999999999997542 2234444443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=207.06  Aligned_cols=225  Identities=18%  Similarity=0.262  Sum_probs=187.0

Q ss_pred             CCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325           54 KDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT  125 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  125 (368)
                      .++|||++..|.|.+||+.+     .+..|..|...++++.|+   ..+|++|+.||+|++||++..+.....       
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-------  172 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-------  172 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-------
Confidence            45999999999999999875     345789999999999998   789999999999999999877643332       


Q ss_pred             ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCceEEEE
Q 047325          126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDAVNSVV  203 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~  203 (368)
                                               .+..+.|++++|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+.
T Consensus       173 -------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n  227 (839)
T KOG0269|consen  173 -------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN  227 (839)
T ss_pred             -------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence                                     23678899999999 5678999999999999999875 45678889999999999


Q ss_pred             eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEec--CCCcEEEEeCCCccccc
Q 047325          204 SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGS--SDGLVNFWEREKQLSHG  279 (368)
Q Consensus       204 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~  279 (368)
                      |+|++ +||+|+.|+.|+|||......     ..........++.++.|-|... .|++++  .|-.|+|||++.+..+.
T Consensus       228 whPnr~~lATGGRDK~vkiWd~t~~~~-----~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  228 WHPNREWLATGGRDKMVKIWDMTDSRA-----KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             ecCCCceeeecCCCccEEEEeccCCCc-----cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence            99988 999999999999999976432     1222334557899999999765 555554  46789999999999999


Q ss_pred             eeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCC
Q 047325          280 GVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       280 ~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ..+..|...+..+.|+   ...+.+++.||+|..-.++.
T Consensus       303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             eeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            9999999999888885   46889999999987655443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=197.75  Aligned_cols=270  Identities=17%  Similarity=0.223  Sum_probs=198.6

Q ss_pred             EEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325           56 LLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT  125 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  125 (368)
                      +|+.+.+||.|.++|..+        ++..+..|.+.|..+.|.  ...|++++.|.++++||++......         
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------  136 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------  136 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------
Confidence            899999999999999753        244567899999999998  4589999999999999999876422         


Q ss_pred             ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe-----------------
Q 047325          126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK-----------------  187 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-----------------  187 (368)
                                           ..++.||...|.+++|.|. ...|++|+.||.|.|||++-..                 
T Consensus       137 ---------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  137 ---------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             ---------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence                                 2245679999999999994 5588999999999999996432                 


Q ss_pred             ----------EEEEeecCCC----ceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccccce--eeccc---cccEE
Q 047325          188 ----------CLESVSAHDD----AVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHSLAQ--TLLKQ---ECAVT  247 (368)
Q Consensus       188 ----------~~~~~~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~~---~~~i~  247 (368)
                                .+..-+++..    .|+.+.|-.+..|++++. |+.|++||++.........+..  .+..+   ...+.
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~  275 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV  275 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence                      0111122333    345566666668888887 9999999999765422222222  12222   45688


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCc-cccceeeeccceE---E-EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLA---V-LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS  322 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  322 (368)
                      ++.....|.+|++.+.|+.|++|++.+. ..+...+.++...   + .+++|++.+|++|+.|...++|.+.... ....
T Consensus       276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e-~~~~  354 (720)
T KOG0321|consen  276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE-APPA  354 (720)
T ss_pred             EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc-CChh
Confidence            8888888999999999999999998853 2233334443322   2 5678999999999999999999998763 4556


Q ss_pred             eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          323 VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       323 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .+.+|.-.|++++|.|..-.           -++|+++|-.++||
T Consensus       355 ~l~Ght~eVt~V~w~pS~~t-----------~v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  355 LLLGHTREVTTVRWLPSATT-----------PVATCSDDFRVKIW  388 (720)
T ss_pred             hhhCcceEEEEEeeccccCC-----------CceeeccCcceEEE
Confidence            67899999999999876432           34555666666555

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=198.82  Aligned_cols=265  Identities=17%  Similarity=0.229  Sum_probs=209.3

Q ss_pred             cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc---eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325           41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      ..|++.-+.++|+  |++|++++.||.|++|+....   ......+...|.+++..+++|++|+.+++|.+|.+..++..
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            4688888888886  559999999999999986532   23334488899999999899999999999999999887642


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                      .                                .+...+-++++++++.+|++++.|+.|-.|++.++.+......+++|
T Consensus        90 ~--------------------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh  137 (933)
T KOG1274|consen   90 T--------------------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH  137 (933)
T ss_pred             c--------------------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence            1                                12226678999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-eeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      +++|.++.++|++ .|++.+-||.|++||+..+.......-+. ..... ...+..++|+|++..++..+.|+.|++|+.
T Consensus       138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r  217 (933)
T KOG1274|consen  138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR  217 (933)
T ss_pred             CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence            9999999999999 99999999999999998653211111111 11111 456778999999888888999999999998


Q ss_pred             CCccccceeeecc---ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          273 EKQLSHGGVLKGH---KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       273 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ............+   ...++.|+|+|+|||+++.||.|.|||+++-  ..    ......|.+++|.|+...+
T Consensus       218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~--~~----~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH--ER----HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc--hh----ccccceeEEEecCCCCCee
Confidence            8766554333222   2445788899999999999999999999872  11    2234679999999987754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=7.7e-27  Score=198.92  Aligned_cols=302  Identities=19%  Similarity=0.293  Sum_probs=232.4

Q ss_pred             cccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CC-EEEEEe
Q 047325           27 FEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GE-KIFTGH   99 (368)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~-~l~s~~   99 (368)
                      ..-++..++.+.+++++...|+++..+|-  .+|.|..+|+|.++|+.  +.+..|+...+.|++++|.  |+ .+++|+
T Consensus       185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~  264 (910)
T KOG1539|consen  185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR  264 (910)
T ss_pred             EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence            34567889999999999999999998875  99999999999999986  5567777777999999998  55 677777


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      ..|.+.+||++..+.......                               .|.+.|..+.|.|....+++++.|+.++
T Consensus       265 ~~G~m~~wDLe~kkl~~v~~n-------------------------------ah~~sv~~~~fl~~epVl~ta~~DnSlk  313 (910)
T KOG1539|consen  265 SNGDMAFWDLEKKKLINVTRN-------------------------------AHYGSVTGATFLPGEPVLVTAGADNSLK  313 (910)
T ss_pred             CCceEEEEEcCCCeeeeeeec-------------------------------cccCCcccceecCCCceEeeccCCCcee
Confidence            889999999998775444332                               2889999999999999999999999999


Q ss_pred             EEEccC--C--eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCC-----------------------
Q 047325          180 VWRISD--S--KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKG-----------------------  230 (368)
Q Consensus       180 iwd~~~--~--~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~-----------------------  230 (368)
                      +|=..+  |  +.++.-.+|..+..|+.|.. ++ .+.+++.|++++.+++......                       
T Consensus       314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~  393 (910)
T KOG1539|consen  314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL  393 (910)
T ss_pred             EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence            885543  3  34555668888888998874 44 7888888888877765321100                       


Q ss_pred             ------------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          231 ------------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       231 ------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                                                                .-......+......+++++.++.|++.+.|...|.|-
T Consensus       394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence                                                      00000011111235688999999999999999999999


Q ss_pred             EEeCCCcccccee--eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCc---------------------------
Q 047325          269 FWEREKQLSHGGV--LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAI---------------------------  317 (368)
Q Consensus       269 i~d~~~~~~~~~~--~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~---------------------------  317 (368)
                      +|+++++......  ...|..++..++.|  ++.+++++.+|.+.+||+....                           
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence            9999988665433  35799999999887  5679999999999999975432                           


Q ss_pred             ------------eeeeEeeeccccCeeEEEEecCCeeeecCC--cceEEEEEeeCC
Q 047325          318 ------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYSGS  359 (368)
Q Consensus       318 ------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~sg~  359 (368)
                                  .+.++.+.+|.+.|++++|||||+++++++  +.+++|.+.||.
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence                        123344568999999999999999766654  456777776664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.8e-27  Score=181.60  Aligned_cols=247  Identities=19%  Similarity=0.296  Sum_probs=206.3

Q ss_pred             EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325           56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS  133 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (368)
                      .+++.-.+++++.    +....+.+|...|..++..  ...+.+++.|.+.+||.++++.+...                
T Consensus       126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~----------------  185 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT----------------  185 (481)
T ss_pred             hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee----------------
Confidence            4555555555422    3345688999999999887  45888999999999999999986443                


Q ss_pred             CCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc------cC----------------------
Q 047325          134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI------SD----------------------  185 (368)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------~~----------------------  185 (368)
                                      |.||.+.|++++|++.+.++++++.|++-+||..      .+                      
T Consensus       186 ----------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d  249 (481)
T KOG0300|consen  186 ----------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD  249 (481)
T ss_pred             ----------------ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence                            4569999999999999999999999999999962      11                      


Q ss_pred             ------------CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325          186 ------------SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS  252 (368)
Q Consensus       186 ------------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  252 (368)
                                  ..++..+.+|...|.+..|...+ .+++++.|.+..+||++++      .++..+.+|....+.++-+
T Consensus       250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTH  323 (481)
T ss_pred             cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------ceeccccCcchhccccccC
Confidence                        02466778899999999999888 9999999999999999987      4678889999999999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325          253 SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV  331 (368)
Q Consensus       253 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v  331 (368)
                      |..+++++.+.|.+.++||++........+.+|...+.+..+. +..+++|++|.+|++||+++. ..++.++. ...++
T Consensus       324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM-RsplATIR-tdS~~  401 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM-RSPLATIR-TDSPA  401 (481)
T ss_pred             CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccc-cCcceeee-cCCcc
Confidence            9999999999999999999998777778899999999988885 778999999999999999875 34556654 56789


Q ss_pred             eEEEEecCCeeeecC
Q 047325          332 KCLAVEEDRDSSSST  346 (368)
Q Consensus       332 ~~l~~~~~~~~~~~~  346 (368)
                      +.++.+..+.++|.-
T Consensus       402 NRvavs~g~~iIAiP  416 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIP  416 (481)
T ss_pred             ceeEeecCCceEEec
Confidence            999999888755543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=2.3e-26  Score=183.31  Aligned_cols=293  Identities=16%  Similarity=0.217  Sum_probs=219.1

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCC------cceecccCCCCCeeEEEEe---CCEE
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNL------KEFCGFKASSGLVKAIVIS---GEKI   95 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~------~~~~~~~~~~~~v~~~~~~---~~~l   95 (368)
                      .++...........|.++|++++|.|.    ++|+|..-|+|-+||+.      ..+..+..|.++|.+|.|+   ...+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            334444455667788999999999854    89999999999999994      3466788999999999998   5689


Q ss_pred             EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325           96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD  175 (368)
Q Consensus        96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  175 (368)
                      ++.+.||+|++-|++...........                              .-...+.++.|+.+...++.+..=
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~  300 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNV  300 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecc
Confidence            99999999999999877543322221                              023456677888877778888777


Q ss_pred             CcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325          176 RTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS  252 (368)
Q Consensus       176 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  252 (368)
                      |...+||++++.. ...+.-|...|+.++++|-.  +|++++.|++.+|||+|.......  +......|...|.+..|+
T Consensus       301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEc
Confidence            8999999998765 66677788999999999988  999999999999999997643221  234556799999999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCC---Cccccceeee-ccce-----E-EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325          253 SSRSIVYCGSSDGLVNFWERE---KQLSHGGVLK-GHKL-----A-VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS  322 (368)
Q Consensus       253 ~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~-~~~~-----~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  322 (368)
                      |.+-.|++.+.|..|+|||..   ...++...+. .+..     . -..|.|+..++++|-.-..|-|+|-..+  +.+.
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~--q~v~  456 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG--QMVC  456 (498)
T ss_pred             CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC--EEee
Confidence            988889999999999999974   2222222222 1111     1 1456788999999999999999976665  5555


Q ss_pred             eeecccc-CeeEE-EEecCCeeeecC-CcceEEEEE
Q 047325          323 VLTGHTG-PVKCL-AVEEDRDSSSST-SSCAQRWIV  355 (368)
Q Consensus       323 ~~~~h~~-~v~~l-~~~~~~~~~~~~-~~~~~~w~l  355 (368)
                      .+..... .|.++ .|+|-+..++++ +..+++|++
T Consensus       457 el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  457 ELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             eccCccccccccceeecccccceeccCCccceEEEE
Confidence            5433322 45554 899999855555 455777744

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.7e-26  Score=173.66  Aligned_cols=238  Identities=17%  Similarity=0.208  Sum_probs=182.8

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+..-...|+++.|+  |.+|++++.|.++++||..++.+......                                +.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s--------------------------------kk   56 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--------------------------------KK   56 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------cc
Confidence            445567889999998  89999999999999999998875444332                                44


Q ss_pred             CCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      -.+..+.|....+.++.++.  |.+|+..++.+.+.++.+.+|...|.+++.+|-+ .+++++.|++|++||+|....  
T Consensus        57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c--  134 (311)
T KOG1446|consen   57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC--  134 (311)
T ss_pred             ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--
Confidence            56777888776667777766  8899999999999999999999999999999988 999999999999999996522  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-cccceeee-----ccceEEEEEEeCCCEEEEeeCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLK-----GHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                          .-.+..  ..-..++|+|+|-++|++.....|++||++.- +.+...+.     ..+-..+.|++||++|+.+...
T Consensus       135 ----qg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  135 ----QGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             ----ceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence                222222  22345789999999999998889999999853 22222222     1223447889999999999999


Q ss_pred             CeEEEEecCCCceeeeEeeeccccC---eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +.+++.|--.+  ..+.++..+...   -.+.+|+||++            .+.+|+.||+|.+||
T Consensus       209 s~~~~lDAf~G--~~~~tfs~~~~~~~~~~~a~ftPds~------------Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  209 SFIYLLDAFDG--TVKSTFSGYPNAGNLPLSATFTPDSK------------FVLSGSDDGTIHVWN  260 (311)
T ss_pred             CcEEEEEccCC--cEeeeEeeccCCCCcceeEEECCCCc------------EEEEecCCCcEEEEE
Confidence            99999987665  466666655443   25778999999            455666666666664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.1e-27  Score=198.46  Aligned_cols=237  Identities=24%  Similarity=0.362  Sum_probs=200.4

Q ss_pred             eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           75 FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      .+.+.+|...|..+++. +..++++++||++++|+-..++.....                              .+.+|
T Consensus         7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~------------------------------~~~~~   56 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETH------------------------------AFEGP   56 (745)
T ss_pred             EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccce------------------------------ecccC
Confidence            45678999999999887 667999999999999998766543321                              12236


Q ss_pred             CCCEeE-EEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325          154 SDAVSC-MSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       154 ~~~v~~-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .+.|.. +++.+ ++-.+++|+.|.+|.+|.+.+..++..+++|...|+++....++.+++|+.|.++++|....     
T Consensus        57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-----  131 (745)
T KOG0301|consen   57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-----  131 (745)
T ss_pred             cceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh-----
Confidence            666665 77765 45579999999999999999999999999999999999988888999999999999998864     


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV  310 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i  310 (368)
                         +...+.+|+..|.++..-|++ .+++|+.|..|++|.-.   .....+.+|...|..+.. ++..+++++.||.|+.
T Consensus       132 ---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~  204 (745)
T KOG0301|consen  132 ---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRL  204 (745)
T ss_pred             ---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEEE
Confidence               466689999999999999987 88999999999999863   334678889999988886 6668999999999999


Q ss_pred             EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      |+++.   .++.++.+|..-|.+++..+++.            .++|+++|+++|||-
T Consensus       205 w~~~g---e~l~~~~ghtn~vYsis~~~~~~------------~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  205 WDLDG---EVLLEMHGHTNFVYSISMALSDG------------LIVSTGEDRTLRIWK  247 (745)
T ss_pred             EeccC---ceeeeeeccceEEEEEEecCCCC------------eEEEecCCceEEEee
Confidence            99844   68889999999999999666666            689999999999993

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.9e-26  Score=189.78  Aligned_cols=306  Identities=15%  Similarity=0.184  Sum_probs=224.8

Q ss_pred             eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceeccc-CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325           38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFK-ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ..+.||++.|.+++.+  |..|++|+.||+||||.+.+..+... .-.+.|.|++|+   ...++++..+..+.+-+..-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            3578999999999876  56999999999999999987765432 335589999998   33455555555566666554


Q ss_pred             CCccccccCCccccceeeeec--cCCCCceeEe--------cccceeeeeecCCCEeEEEEcCCCCEEEEEeCC---CcE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKS--SIKPSNYIEV--------RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD---RTF  178 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i  178 (368)
                      +..........     .+...  ...+...+..        ....+.....|...|+.+.|+..|.+|++...+   ..|
T Consensus       474 G~~~e~~~t~e-----ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  474 GDRLEVGPTKE-----LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             cchhhhcchhh-----hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            42211111000     00000  0000000000        011134556699999999999999999998654   478


Q ss_pred             EEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325          179 KVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI  257 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  257 (368)
                      .|.++...+...-|+...+.|.++.|+|.. +|++++ ...|++||+...      ..+..+......|..++.+|.|..
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGDN  621 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCCe
Confidence            999998777777776677889999999998 666665 458999999753      355666667778999999999999


Q ss_pred             EEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEec-------CCCceeeeEeeeccc
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRR-------DGAIHTCLSVLTGHT  328 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~~h~  328 (368)
                      |+.|+.|+.+..||+.-...+...+..|...+.++++  .-.++++|+.||++.|+.-       .+....++..+.+|.
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            9999999999999999777777788888888866665  4568999999999999852       233346778888997


Q ss_pred             cC----eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          329 GP----VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       329 ~~----v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..    |.+..|+|.-.            -|++++.||+||+|
T Consensus       702 ~~~~~gVLd~~wHP~qp------------WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPRQP------------WLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCCCc------------eEEecCCCceEEee
Confidence            66    99999999988            37788999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=2.1e-25  Score=180.08  Aligned_cols=300  Identities=16%  Similarity=0.176  Sum_probs=203.9

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      ..|.|++|.++ -++||.++|.|.||+....  .+....|.+.|.+++.- ...|++|+.|..|..||- +-+.....+.
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~el  325 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETEL  325 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccC
Confidence            45999999876 8899999999999997632  23334999999999988 668888999999999993 2222222222


Q ss_pred             Cc-cccceeeeeccC------CCCcee--EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          121 GT-LPTLKDIFKSSI------KPSNYI--EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       121 ~~-~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      +. ......+.....      ..+..+  .+.........+|.+....++.+|+.+++++++.|+.+++|+  ..+++.+
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt  403 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT  403 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence            11 111111111111      111111  122233345578999999999999999999999999999999  4555544


Q ss_pred             eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      .. -..++.|+.|+|.|.++.|...|...+.|.++..      .+ .......++++++|+|+|.+||.|+.|+.|++|.
T Consensus       404 ~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~------lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  404 KI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD------LV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR  475 (626)
T ss_pred             EE-ecCceeEeeccCcceEEEeeccceEEEEecccce------eE-EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            43 4567899999999999999999999999998642      22 3333378899999999999999999999999998


Q ss_pred             CCCcc-ccceeeeccceEE--EEEEeCCCE--------------------------------------------------
Q 047325          272 REKQL-SHGGVLKGHKLAV--LCLAAAGKL--------------------------------------------------  298 (368)
Q Consensus       272 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~--------------------------------------------------  298 (368)
                      +.... .....-..+..++  +.+++|+++                                                  
T Consensus       476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~  555 (626)
T KOG2106|consen  476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDIN  555 (626)
T ss_pred             ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHH
Confidence            76432 2211111122222  223334444                                                  


Q ss_pred             ----------EEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          299 ----------VFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       299 ----------l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                +++|.+.|.|++|...-. ...+..++.+|+.-|++++|.-+..            .+.+.+.|.+|..|
T Consensus       556 a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~------------~li~tg~D~Si~qW  623 (626)
T KOG2106|consen  556 AVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS------------HLISTGKDTSIMQW  623 (626)
T ss_pred             HhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc------------eEEecCCCceEEEE
Confidence                      555555555555544321 1234456678999999999998877            34444477777766

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=185.19  Aligned_cols=278  Identities=23%  Similarity=0.368  Sum_probs=210.0

Q ss_pred             CCccccccccCCCceeeeccCc-CCcEEEEE-ecCCEEEEccCC-CcEEEEcCCccee--cccCCCCCeeEEEEe--CCE
Q 047325           22 PGWSQFEENLPQNGLIGSLVRE-EGHIYSLA-ASKDLLYTGSDS-KNIRVWKNLKEFC--GFKASSGLVKAIVIS--GEK   94 (368)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~-~~~~~l~s~~~d-g~i~iw~~~~~~~--~~~~~~~~v~~~~~~--~~~   94 (368)
                      +.|+-...++..+...-++++- ...-.++. ..+++++++... ..+.+|.+.++.+  ...--.++|.++.-+  |.+
T Consensus        16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~   95 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF   95 (476)
T ss_pred             CCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence            3444445555555555555544 22222222 345666666544 4788999876533  234456789999876  778


Q ss_pred             EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC
Q 047325           95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW  174 (368)
Q Consensus        95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  174 (368)
                      |+.|+..|.|++|.+.++.......                                +|-..|+|+.|+.|+.+|++|+.
T Consensus        96 l~ag~i~g~lYlWelssG~LL~v~~--------------------------------aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   96 LLAGTISGNLYLWELSSGILLNVLS--------------------------------AHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             EEeecccCcEEEEEeccccHHHHHH--------------------------------hhccceeEEEEeCCCcEEEecCC
Confidence            8888899999999999998655443                                39999999999999999999999


Q ss_pred             CCcEEEEEcc---------CCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc
Q 047325          175 DRTFKVWRIS---------DSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ  242 (368)
Q Consensus       175 d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  242 (368)
                      ||.|.+|++.         +-+++..+..|.-+|+++...+.+   ++++++.|.++++||+..+.       +......
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------LLlti~f  216 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------LLLTITF  216 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------eeEEEec
Confidence            9999999873         346788999999999999988775   99999999999999998762       2233345


Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc---------------ccceeeeccce--EEEE--EEeCCCEEEEee
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL---------------SHGGVLKGHKL--AVLC--LAAAGKLVFSGS  303 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~~~~--~~~~~~~l~~~~  303 (368)
                      ...+.+++.+|.+..+++|+++|.|.+.++.+..               .....+.+|..  .|.|  ++.||.+|++|+
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            6789999999999999999999999998865321               11123456666  5655  556999999999


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .||.|+|||+...  ++++++..-.++|+.+.+.|-.
T Consensus       297 ~dg~VcvWdi~S~--Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  297 EDGKVCVWDIYSK--QCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             CCCCEEEEecchH--HHHHHHhhhccccceeEeeccc
Confidence            9999999998776  7777776677899999986543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.3e-26  Score=193.78  Aligned_cols=297  Identities=20%  Similarity=0.281  Sum_probs=224.1

Q ss_pred             CCceeeeccCcCCcEEEEEec---C-C-EEEEccCCCcEEEEcCC--c------------------------ce------
Q 047325           33 QNGLIGSLVREEGHIYSLAAS---K-D-LLYTGSDSKNIRVWKNL--K------------------------EF------   75 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~---~-~-~l~s~~~dg~i~iw~~~--~------------------------~~------   75 (368)
                      ....+..+.||.+.|.+++|.   + + +||++|.|..||||.+.  .                        .+      
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            446788899999999999995   3 3 99999999999999641  0                        01      


Q ss_pred             -ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           76 -CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        76 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                       ..+.+|...|.++.|.  +..|++++.|.++.+|...+..-.....                         .+.....|
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~-------------------------vRlGe~gg  314 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV-------------------------VRLGEVGG  314 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE-------------------------EEeecccc
Confidence             1235899999999998  5579999999999999877653222111                         11111123


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .........|+|+++.+++-+..|..++|.....   .+...+.+|...|++++|.|.| +|++.+.|.+-|+|-.-..+
T Consensus       315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q  394 (764)
T KOG1063|consen  315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ  394 (764)
T ss_pred             cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence            5566788999999999999999999999983221   3445567899999999999999 88899999888887322000


Q ss_pred             CC------------------------------------------------------------------------------
Q 047325          229 KG------------------------------------------------------------------------------  230 (368)
Q Consensus       229 ~~------------------------------------------------------------------------------  230 (368)
                      ..                                                                              
T Consensus       395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~  474 (764)
T KOG1063|consen  395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF  474 (764)
T ss_pred             cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence            00                                                                              


Q ss_pred             --------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cE
Q 047325          231 --------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LV  267 (368)
Q Consensus       231 --------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i  267 (368)
                                                            ...+...++.+|...|.+++.+|+++++|+++...     .|
T Consensus       475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI  554 (764)
T KOG1063|consen  475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI  554 (764)
T ss_pred             cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence                                                  00011234556778999999999999999998654     58


Q ss_pred             EEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeee
Q 047325          268 NFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ++|+..+.... ..+.+|...|  +.|+||+++|++.+.|.++.+|......  .......+.|..-|++..|+|++.  
T Consensus       555 ~lw~t~~W~~~-~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~--  631 (764)
T KOG1063|consen  555 RLWNTANWLQV-QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK--  631 (764)
T ss_pred             EEEeccchhhh-heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc--
Confidence            99998876555 4788898888  5677899999999999999999874321  111233678999999999999999  


Q ss_pred             ecCCcceEEEEEeeCCcccccccC
Q 047325          344 SSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       344 ~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                .++|+|.|++|++|
T Consensus       632 ----------~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  632 ----------YFATASRDKKVKVW  645 (764)
T ss_pred             ----------eeEEecCCceEEEE
Confidence                      68889999998888

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.9e-27  Score=179.71  Aligned_cols=247  Identities=19%  Similarity=0.310  Sum_probs=197.8

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee----cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC----GFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      ...+++++|..|.++|+++.|+|.  +|++|+.|++|+++|..+...    .......+|.++.|.  |++|+.|....+
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~  239 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT  239 (430)
T ss_pred             cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence            346889999999999999999987  999999999999999875321    223456789999998  999999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      +++||+++-++.......                             .+|++.|+++.+++.+++.++++.||.|++||-
T Consensus       240 ~rlYdv~T~QcfvsanPd-----------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  240 LRLYDVNTYQCFVSANPD-----------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             eeEEeccceeEeeecCcc-----------------------------cccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            999999988754433211                             129999999999999999999999999999999


Q ss_pred             cCCeEEEEee-cCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-----cccEEEEEEcCCC
Q 047325          184 SDSKCLESVS-AHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-----ECAVTALVVSSSR  255 (368)
Q Consensus       184 ~~~~~~~~~~-~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~  255 (368)
                      -+++++.++. +|. ..|.+..|..++ ++++.+.|..+++|.+.++.      ++....+.     +.--+...|+...
T Consensus       291 VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R------~l~~YtGAg~tgrq~~rtqAvFNhtE  364 (430)
T KOG0640|consen  291 VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR------MLKEYTGAGTTGRQKHRTQAVFNHTE  364 (430)
T ss_pred             ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc------eEEEEecCCcccchhhhhhhhhcCcc
Confidence            9999998886 354 468899999999 99999999999999998763      33333322     1122334566666


Q ss_pred             CEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEec
Q 047325          256 SIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       256 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      .+++.-. ..+.+.-||.++.........+|.+.+..+  +|.+.-+++|+.|-.+++|--
T Consensus       365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            6666544 346799999998877777778899888666  478899999999999999953

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.2e-25  Score=159.96  Aligned_cols=244  Identities=20%  Similarity=0.278  Sum_probs=192.1

Q ss_pred             CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe------CCEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS------GEKIF   96 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~------~~~l~   96 (368)
                      |+.-+.+.-+.|.+.|+|.+|+  |+++++|+.|++|++.....       ....+.-|.+.|..++|-      +..|+
T Consensus        77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            4444556778899999999998  45999999999999975543       244677899999999995      34566


Q ss_pred             EEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325           97 TGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD  175 (368)
Q Consensus        97 s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  175 (368)
                      +++ .|..|.+-|...++.                                ...+.||++-|.++. +=++-.+++|+.|
T Consensus       157 s~gagdc~iy~tdc~~g~~--------------------------------~~a~sghtghilaly-swn~~m~~sgsqd  203 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQG--------------------------------FHALSGHTGHILALY-SWNGAMFASGSQD  203 (350)
T ss_pred             ecCCCcceEEEeecCCCCc--------------------------------ceeecCCcccEEEEE-EecCcEEEccCCC
Confidence            554 355566666665542                                223445999888874 2357799999999


Q ss_pred             CcEEEEEccCCeEEEEeec--C-----CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          176 RTFKVWRISDSKCLESVSA--H-----DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      .+|++||++-..++.++..  |     ...|.+++..|.| +|++|-.|....+||++.+      .+++.+..|...|.
T Consensus       204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~------r~iq~f~phsadir  277 (350)
T KOG0641|consen  204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG------RMIQRFHPHSADIR  277 (350)
T ss_pred             ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC------ceeeeeCCCcccee
Confidence            9999999998888877642  2     3578999999999 8999999999999999976      46888999999999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCC---ccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecC
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ++.|+|...++++++.|..|++-|++.   .+.+......|...+..  +.|..--+++.+.|.++.+|-+.
T Consensus       278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            999999999999999999999999884   34444556677776644  44566678889999999999653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.7e-26  Score=180.58  Aligned_cols=274  Identities=15%  Similarity=0.221  Sum_probs=205.2

Q ss_pred             CCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCc
Q 047325           44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      .+.|+++.|++.  +|++|+.||+++||.+..    .++.+.....+|.+..|.  |. .+++++.-..+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            467999999977  999999999999998763    345555667788888887  66 899999999999999988765


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      .........                             ....+....+++++++|+..+..|.|.+....+++.+..++ 
T Consensus       293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-  342 (514)
T KOG2055|consen  293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-  342 (514)
T ss_pred             ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence            433332211                             12456678889999999999999999999999999999887 


Q ss_pred             CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      -++.|..++|+.++ .|++.+.+|.|.+||++..      .+...+... .-.-++++.++++.+||+|+..|.|.|||.
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            46789999999999 8888889999999999876      234443322 223467888899999999999999999996


Q ss_pred             CCc-----cccceeeeccceEE--EEEEeCCCEEEEeeC--CCeEEEEecCCCceeeeEeeec---cccCeeEEEEecCC
Q 047325          273 EKQ-----LSHGGVLKGHKLAV--LCLAAAGKLVFSGSA--DKTICVWRRDGAIHTCLSVLTG---HTGPVKCLAVEEDR  340 (368)
Q Consensus       273 ~~~-----~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~  340 (368)
                      .+.     ..+...+..-...|  +.|++|.++|+.+|.  +..+++-.+.+.  ....-+..   .-+.|+||+|+|.+
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce--eeeccCCCCCCcccceEEEEecCCC
Confidence            632     12222222222333  566678999988875  677888877654  33333332   23459999999999


Q ss_pred             eeeecCCcceEEEEEeeCCcccccccC
Q 047325          341 DSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      -            +++.|..+|.|.+|
T Consensus       495 G------------~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  495 G------------YLAVGNEAGRVHLF  509 (514)
T ss_pred             c------------eEEeecCCCceeeE
Confidence            8            56677777777766

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.4e-28  Score=203.38  Aligned_cols=247  Identities=25%  Similarity=0.389  Sum_probs=206.6

Q ss_pred             EEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccC
Q 047325           57 LYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI  134 (368)
Q Consensus        57 l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (368)
                      ++.+..+-.+++||..+    +..|...+.++...  ++.+++|+.|..+.+|.+.......                  
T Consensus         7 ~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------   64 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------   64 (825)
T ss_pred             cceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh------------------
Confidence            34444555677777654    34577777777754  7899999999999999887654322                  


Q ss_pred             CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325          135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  213 (368)
                                    .+.+|..+|.++.|++...+|++|+.+|+|++||++..+.++++.+|...+.++.|+|-+ +.+.|
T Consensus        65 --------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   65 --------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             --------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccc
Confidence                          245599999999999999999999999999999999999999999999999999999999 88899


Q ss_pred             cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--
Q 047325          214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--  291 (368)
Q Consensus       214 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--  291 (368)
                      +.|..+++||++..+      +...+.+|...+..+.|+|+|++++.|++|..+++||+..++.. ..+..|...+..  
T Consensus       131 Stdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle  203 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLE  203 (825)
T ss_pred             cccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccccccccccccc
Confidence            999999999998543      57777889999999999999999999999999999999887665 567778777754  


Q ss_pred             EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc
Q 047325          292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS  348 (368)
Q Consensus       292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  348 (368)
                      ++|..-++++|+.|+++++||+++-  +.+.........|.+++|+|++..+.++..
T Consensus       204 ~hp~e~Lla~Gs~d~tv~f~dletf--e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  204 FHPLEVLLAPGSSDRTVRFWDLETF--EVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             cCchhhhhccCCCCceeeeecccee--EEeeccCCccCCceeeeecCCceeeecCch
Confidence            4556778999999999999998865  667777777889999999999997666553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=8.6e-25  Score=176.61  Aligned_cols=313  Identities=16%  Similarity=0.270  Sum_probs=220.7

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCC--------cEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEE--e
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSK--------NIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTG--H   99 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg--------~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~--~   99 (368)
                      +.+.+|...|.|++.+|+  .+++|-.-|        .+|+||..+  .+..+......|.+++|+    |.+|+..  +
T Consensus        98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s  177 (626)
T KOG2106|consen   98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS  177 (626)
T ss_pred             ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence            446789999999999998  556554444        499999653  455555677889999998    5555554  4


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCC--c----------ee-Eecc----cceeeeee-cCCCEeEEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS--N----------YI-EVRR----HRTALWIR-HSDAVSCMS  161 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~-~~~~----~~~~~~~~-~~~~v~~~~  161 (368)
                      .+..+.+||...+...........    ..+...++|.  +          ++ ..+.    .+...+.+ ..+.|.|++
T Consensus       178 ~~h~lSVWdWqk~~~~~~vk~sne----~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~  253 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKAKLGPVKTSNE----VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT  253 (626)
T ss_pred             CccccchhhchhhhccCcceeccc----eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence            466799999987765433332111    1111111111  1          11 1111    11112222 236799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc---------
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK---------  232 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------  232 (368)
                      |.+++. +++|..+|.|.||+..+.+..+....|++.|.+++...+|.|++|+.|+.|..||-.-......         
T Consensus       254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI  332 (626)
T ss_pred             EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence            999886 7799999999999998888887777999999999999999999999999999999432211000         


Q ss_pred             -------------------------cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce
Q 047325          233 -------------------------HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       233 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                                               ........+|......++.+|+.+.+++++.|+.+++|+  ..+.........+.
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~  410 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA  410 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence                                     000122345666788899999999999999999999999  34444455556677


Q ss_pred             EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325          288 AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK  362 (368)
Q Consensus       288 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~  362 (368)
                      ....|+|.| .++.|...|...+.|.++.  ..+..-. ...+++.++|+|+|.++|.++.++.++ ++.-+.+|
T Consensus       411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iy-iy~Vs~~g  480 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIY-IYRVSANG  480 (626)
T ss_pred             eEeeccCcc-eEEEeeccceEEEEecccc--eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEE-EEEECCCC
Confidence            778889999 9999999999999998875  3343333 388999999999999888887776664 33444444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=8.3e-26  Score=198.22  Aligned_cols=245  Identities=18%  Similarity=0.242  Sum_probs=197.0

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------------------ceecccCCCCCeeEEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------------------EFCGFKASSGLVKAIVI   90 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------------------~~~~~~~~~~~v~~~~~   90 (368)
                      -.+.+.++..|.+.|+|+.|+++  +||+||+|+.|.||+...                    ....+.+|...|..++|
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W  137 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW  137 (942)
T ss_pred             cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence            46678889999999999999765  999999999999998541                    24467899999999999


Q ss_pred             e--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE
Q 047325           91 S--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL  168 (368)
Q Consensus        91 ~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  168 (368)
                      +  +.+|++++.|++|.+|+..+.+.                                ..++.+|...|..+.|.|-|++
T Consensus       138 sp~~~~lvS~s~DnsViiwn~~tF~~--------------------------------~~vl~~H~s~VKGvs~DP~Gky  185 (942)
T KOG0973|consen  138 SPDDSLLVSVSLDNSVIIWNAKTFEL--------------------------------LKVLRGHQSLVKGVSWDPIGKY  185 (942)
T ss_pred             CCCccEEEEecccceEEEEcccccee--------------------------------eeeeecccccccceEECCccCe
Confidence            9  88999999999999999887642                                3345569999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCeEEEEeecCC------CceEEEEeCCCC-eEEEEcC----CCeEEEEEcCCCCCCcccccce
Q 047325          169 LYTASWDRTFKVWRISDSKCLESVSAHD------DAVNSVVSSSEG-LIFTGSA----DGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      |++-+.|++|++|++.+....+.+.++.      .....+.|+||| +|++...    -..+.|.+..+-      ....
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW------k~~~  259 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW------KVDK  259 (942)
T ss_pred             eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc------eeee
Confidence            9999999999999988777776665542      357789999999 7776543    345777765432      4567


Q ss_pred             eeccccccEEEEEEcC-----CCC------------EEEEecCCCcEEEEeCCCccccceee--eccceEEEEEEeCCCE
Q 047325          238 TLLKQECAVTALVVSS-----SRS------------IVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKL  298 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~-----~~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~  298 (368)
                      .+.+|..++.++.|+|     +.+            .+|+|+.|++|.||.....+.+....  ..+...-++++|||-.
T Consensus       260 ~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~  339 (942)
T KOG0973|consen  260 DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS  339 (942)
T ss_pred             eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe
Confidence            7889999999999998     112            68899999999999987655543332  3334344666678999


Q ss_pred             EEEeeCCCeEEEEecCC
Q 047325          299 VFSGSADKTICVWRRDG  315 (368)
Q Consensus       299 l~~~~~dg~i~iw~~~~  315 (368)
                      |+++|.||+|.+..++.
T Consensus       340 LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  340 LFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEEecCCeEEEEEcch
Confidence            99999999999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.8e-25  Score=167.03  Aligned_cols=231  Identities=16%  Similarity=0.207  Sum_probs=175.6

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ....|.++.|+  ++.|++++.||++++||+...+......                                 |..++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------------------------------~~~plL   58 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------------------------------HGAPLL   58 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------------------------------cCCcee
Confidence            45679999998  6788888899999999998775433332                                 889999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      +++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+...+.. .+++|+.|++|++||.+...      ...
T Consensus        59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~------~~~  130 (323)
T KOG1036|consen   59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV------VVG  130 (323)
T ss_pred             eeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc------ccc
Confidence            999987 467999999999999999887654 455699999999998765 99999999999999998531      122


Q ss_pred             eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee-ec--cceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KG--HKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      . ......|.++..  .++.|+.|+.|..+.+||+++........ ..  -....+++-|++.-.++++-||+|.+=.++
T Consensus       131 ~-~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  131 T-FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             c-cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            2 223347887766  47889999999999999999765543111 11  223335555788889999999999886665


Q ss_pred             CC--ceeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          315 GA--IHTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       315 ~~--~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..  .......|+.|..         ||++|+|+|-..            .++||+.||.|-+|
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~------------tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG------------TFATGGSDGIVNIW  259 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc------------eEEecCCCceEEEc
Confidence            43  2233455666643         799999999988            67788888888777

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-26  Score=181.64  Aligned_cols=233  Identities=20%  Similarity=0.307  Sum_probs=174.7

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCcccccc-CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKR-AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLL  169 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  169 (368)
                      |+++|.|+.|..|.|||+.-........ .+.....            .......+...-.+|++.|..+.|+.. .+.|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk------------~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL  259 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASK------------KKKKKGKRSNSASGHTDAVLALSWNRNFRNVL  259 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhh------------hhhhhcccccccccchHHHHHHHhccccceeE
Confidence            7899999999999999997544322111 1100000            000001112223469999999999874 5689


Q ss_pred             EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      ++|+.|.+|++||+.++++...+..|...|.++.|+|..  .|++|+.|+++.+.|.|....      ....-...+.|.
T Consensus       260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VE  333 (463)
T KOG0270|consen  260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVE  333 (463)
T ss_pred             EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceE
Confidence            999999999999999999999999999999999999987  999999999999999996422      222223456799


Q ss_pred             EEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325          248 ALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       248 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~  323 (368)
                      .++|.|. ...++++..||+|+-+|+|....+......|...|.+++.+   ..++++++.|+.|++|++.......+..
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence            9999984 45788889999999999999878888999999999888875   5689999999999999997654433332


Q ss_pred             eeccccCeeEEEEecCCee
Q 047325          324 LTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~~~~~  342 (368)
                      -.-.-+...|.++.|+-..
T Consensus       414 ~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             ccccccceeecccCCCcce
Confidence            2222234667788887664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-24  Score=185.29  Aligned_cols=311  Identities=17%  Similarity=0.261  Sum_probs=226.9

Q ss_pred             ccccCCCceeeeccCcCCcEEEEEec--CC-EEEEccCCCcEEEEcCCccee---cccCCCCCeeEEEEe--CCEEEEEe
Q 047325           28 EENLPQNGLIGSLVREEGHIYSLAAS--KD-LLYTGSDSKNIRVWKNLKEFC---GFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        28 ~~~~~~~~~~~~~~~h~~~i~~~~~~--~~-~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      .-++..++.+.+++.-.++|++++|.  |+ .+|+|+..|.+-+||+++...   ....|.+.|....|.  ...+++++
T Consensus       228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~  307 (910)
T KOG1539|consen  228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG  307 (910)
T ss_pred             EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence            34567777788877667999999996  55 899999999999999985432   345788888888887  45889999


Q ss_pred             CCCeEEEEeecCCCccc---cccCCc--cccceee--------eecc---------------------------------
Q 047325          100 QDGKIRVWKISPKNQSV---HKRAGT--LPTLKDI--------FKSS---------------------------------  133 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~---~~~~~~--~~~~~~~--------~~~~---------------------------------  133 (368)
                      .|..+++|=.+++.-..   ..+.+.  .+....+        ....                                 
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence            99999999776443211   010000  0000000        0000                                 


Q ss_pred             -------CCCCc--------------ee--Eecccceeee-----------eecC------CCEeEEEEcCCCCEEEEEe
Q 047325          134 -------IKPSN--------------YI--EVRRHRTALW-----------IRHS------DAVSCMSLDQDCGLLYTAS  173 (368)
Q Consensus       134 -------~~~~~--------------~~--~~~~~~~~~~-----------~~~~------~~v~~~~~~~~~~~l~~~~  173 (368)
                             ..+..              .+  .........|           ..+.      ..+++++.++-|++.+.|+
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~  467 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY  467 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence                   00000              00  0000000111           1122      5688999999999999999


Q ss_pred             CCCcEEEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325          174 WDRTFKVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (368)
                      ..|.|-+|++.+|.....+   +.|.++|+.++...-+ .+++++.+|.+++||.....       ......-...+.++
T Consensus       468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-------l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-------LKKSLRLGSSITGI  540 (910)
T ss_pred             cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-------eeeeeccCCCccee
Confidence            9999999999999998888   5899999999998777 89999999999999997541       22222345568888


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      .++.....++.+..|=.|+++|..+.+.. +.+.+|...+  ++|+|||++|++++.|++|++||+.++  .++-.+ .-
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvv-R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~--~lID~~-~v  616 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTRKVV-REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG--TLIDGL-LV  616 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhhhhh-HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc--ceeeeE-ec
Confidence            88888889999999999999999986554 6778888887  566789999999999999999999887  445444 35


Q ss_pred             ccCeeEEEEecCCeeeecCCcc
Q 047325          328 TGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       328 ~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      ..+.+++.|+|+|.+||++.-+
T Consensus       617 d~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  617 DSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             CCcceeeEECCCCCEEEEEEec
Confidence            6789999999999988887533

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-24  Score=178.94  Aligned_cols=275  Identities=21%  Similarity=0.266  Sum_probs=211.0

Q ss_pred             CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc---eeccc-CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCc
Q 047325           42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE---FCGFK-ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~---~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      --..+|.++||+.+  .||.+-.||.|.+|++...   ...+. +....|.+++|. +.+|++.+.+|.|.-||+.+.++
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence            34678999999854  8999999999999998743   22233 456789999999 99999999999999999998876


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE--Ee
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE--SV  192 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~  192 (368)
                      ......                                ..+.|.+++.+|.+..++.|+.||.+..++...++...  .+
T Consensus       103 ~~~~d~--------------------------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l  150 (691)
T KOG2048|consen  103 KYNIDS--------------------------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL  150 (691)
T ss_pred             eEEecC--------------------------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence            554443                                66899999999999999999999988888887776543  34


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc--ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH--SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                      ...++.|.++.|+|++ .+++|+.||.|++||...+......  +....-.....-|.++.|-.+ ..|++|.+.|.|.+
T Consensus       151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~F  229 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTF  229 (691)
T ss_pred             ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEE
Confidence            4456899999999999 7999999999999999876442100  011111123445778887754 57999999999999


Q ss_pred             EeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCce--eeeEeeeccccCeeEEEEecCCeeeec
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      ||...+... .....|...|.++..  +++++++++.|+.|.-|...+...  ........|...|.+++..++      
T Consensus       230 Wd~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~------  302 (691)
T KOG2048|consen  230 WDSIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN------  302 (691)
T ss_pred             EcccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc------
Confidence            999887665 456678888877764  678999999999999987765422  233334568888999999887      


Q ss_pred             CCcceEEEEEeeCCccccc
Q 047325          346 TSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       346 ~~~~~~~w~l~sg~~D~~v  364 (368)
                              .+++|+.|..+
T Consensus       303 --------~l~sgG~d~~l  313 (691)
T KOG2048|consen  303 --------ALISGGRDFTL  313 (691)
T ss_pred             --------eEEecceeeEE
Confidence                    35566666554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=3.5e-25  Score=172.60  Aligned_cols=207  Identities=19%  Similarity=0.359  Sum_probs=167.6

Q ss_pred             CceeeeccCcCCcEEEEEec--CC--EEEEccCCCcEEEEcCC------------------cceecccCCCCCeeEEEEe
Q 047325           34 NGLIGSLVREEGHIYSLAAS--KD--LLYTGSDSKNIRVWKNL------------------KEFCGFKASSGLVKAIVIS   91 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~--~~--~l~s~~~dg~i~iw~~~------------------~~~~~~~~~~~~v~~~~~~   91 (368)
                      ...-....+|.+.|+.+...  ++  +.++=+..|.|.||++.                  +++.++.+|...=++|+|+
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            34445566788887777654  23  78888999999999863                  2355677888888999998


Q ss_pred             ---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CC
Q 047325           92 ---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CG  167 (368)
Q Consensus        92 ---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  167 (368)
                         ...|++|..-+.|++|...++.-..                             ....+.+|+..|-.++|+|. ..
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~v-----------------------------d~~Pf~gH~~SVEDLqWSptE~~  271 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKV-----------------------------DQRPFTGHTKSVEDLQWSPTEDG  271 (440)
T ss_pred             cccccccccCccccceEeeeeccCceee-----------------------------cCccccccccchhhhccCCccCc
Confidence               4578999999999999998865222                             12234569999999999995 45


Q ss_pred             EEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325          168 LLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE  243 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  243 (368)
                      .|++|+.||+|+|||++.+   .++. .++|...|+.|.|+..- +|++|+.||+++|||+|+.+..   .++..+..|.
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk  347 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHK  347 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEecc
Confidence            8999999999999999987   3333 37899999999999887 8999999999999999987442   5778899999


Q ss_pred             ccEEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 047325          244 CAVTALVVSSS-RSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       244 ~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  273 (368)
                      .+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999999994 4688889999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.8e-25  Score=179.18  Aligned_cols=254  Identities=13%  Similarity=0.216  Sum_probs=204.0

Q ss_pred             EEEEEecCC-EEE--EccCCCcEEEEcCCcc---e---ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcc
Q 047325           47 IYSLAASKD-LLY--TGSDSKNIRVWKNLKE---F---CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        47 i~~~~~~~~-~l~--s~~~dg~i~iw~~~~~---~---~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      +.++.|+.+ +|+  +-+.|..|++|.-..+   +   ....+.  .-.|++..  ..|+++|+..+.|+|||+......
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h  114 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH  114 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence            888888755 344  4466888999975433   1   112222  22233222  579999999999999999843322


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                      .                                .+.+|.+.|+++.++-...+|++++..|.|.|..+.++.....|...
T Consensus       115 r--------------------------------~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen  115 R--------------------------------FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             h--------------------------------hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            1                                12349999999999999999999999999999999999888888755


Q ss_pred             -CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEe
Q 047325          196 -DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       196 -~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  271 (368)
                       ...|.-+.+++..  +|.+++.+|.|.+||+.....     .......|..+...++|+| +..+|++.+.|..|.+||
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence             4456688999987  888999999999999975432     4455667999999999999 456888899999999999


Q ss_pred             CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .+...........|+...++|.++|.+|++|...|.|..||++.. ..++..+..|...|++++|-|..
T Consensus       238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-KAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC-CCCceEeeecccceeEEEeeecc
Confidence            998777777778899899999999999999999999999999865 47788899999999999998875

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.6e-25  Score=176.71  Aligned_cols=224  Identities=18%  Similarity=0.274  Sum_probs=175.4

Q ss_pred             CCEEEEccCCCcEEEEcCC--c---c------------------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325           54 KDLLYTGSDSKNIRVWKNL--K---E------------------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~--~---~------------------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw  107 (368)
                      |+++|.|..|..|.|||+.  .   +                  -....+|+..|.++.|+   .+.|++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            4599999999999999963  0   0                  00123689999999998   6789999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      |+.++++......                                |.+.|.+++|+|. ...|++|+.|+++.+.|.+..
T Consensus       272 D~~~g~p~~s~~~--------------------------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  272 DVDTGKPKSSITH--------------------------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             EcCCCCcceehhh--------------------------------cCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            9999986554442                                8999999999994 568999999999999999853


Q ss_pred             eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEecC
Q 047325          187 KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSS  263 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  263 (368)
                      ......-...+.|-.++|.|..  .++++..||.|+-+|+|..++     ++..+..|.++|.++++++. ..++++++.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence            3332222346788999999987  888999999999999998754     78888999999999999884 457889999


Q ss_pred             CCcEEEEeCCCccccceeeeccc---eEEEEEEeC---CCEEEEeeCCCeEEEEecCCC
Q 047325          264 DGLVNFWEREKQLSHGGVLKGHK---LAVLCLAAA---GKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |+.|++|++......  ....|.   ....|++++   .-.++.|+..+.++|||+.+.
T Consensus       395 d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            999999998743221  111221   123455543   457888999999999998664

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=5.6e-25  Score=177.76  Aligned_cols=228  Identities=17%  Similarity=0.261  Sum_probs=179.8

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      ..|..-|.++.++  .++++||+ .|.|+|||+...........  ...                         ....+.
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq--Ldc-------------------------l~rdny  467 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ--LDC-------------------------LNRDNY  467 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccc--ccc-------------------------cCcccc
Confidence            3588888888888  66888887 57999999976532111110  000                         003467


Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      |+++...||++.|++|+.-.++.|||+....+.  ..+........+++.+||. ..+++..||.|.|||+++.      
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------  541 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------  541 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------
Confidence            889999999999999999999999999765543  3333344567788999999 8889999999999999876      


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..++.+.+|...+.||.++++|..|.+|+-|++|+.||++++..+...........+..+|++.+|+.|-+++.+-|-..
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence            46889999999999999999999999999999999999998877655444444455666789999999999999988866


Q ss_pred             CCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          314 DGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       314 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ...   ....+.-|..-|.++.|.+-|+++
T Consensus       622 skp---~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  622 SKP---EKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             CCc---cceeecccccEEEEEEecccCcee
Confidence            543   345566799999999999999943

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=179.91  Aligned_cols=295  Identities=18%  Similarity=0.234  Sum_probs=200.1

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw  107 (368)
                      ++....|.++|..+.+-+.  .|++++.|.++++||+.+.    ...+.+|.+.|.+++|.   ...+++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            4556789999999998744  9999999999999998743    33478999999999997   6789999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE---EEEcCCCCEEEEEeC-CCcEEEEEc
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC---MSLDQDCGLLYTASW-DRTFKVWRI  183 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~  183 (368)
                      |+.-...........  .........  + .-......+...+..+...|.+   +.+..|...|++++. |+.|++||+
T Consensus       173 D~R~n~~d~~e~~~~--~~~~~~n~~--p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDN--RIYGRHNTA--P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEeccchhhHHHHhh--hhhccccCC--C-CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            997654211111000  000000000  0 0011112222333345555555   555678889999988 999999999


Q ss_pred             cCCeEEEEe--------ecC---CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEE
Q 047325          184 SDSKCLESV--------SAH---DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTAL  249 (368)
Q Consensus       184 ~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~  249 (368)
                      ++.......        ..|   .-.+.++.....| +|++.+.|+.|++|++.....    .+...+.++..  .-..-
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks  323 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKS  323 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeee
Confidence            876543322        122   2356677777777 777777799999999987643    23333333221  12233


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCc---------
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAI---------  317 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~---------  317 (368)
                      ..+|++.++++|+.|...++|.+.+.+.....+.+|...|.++.|.   -.-++++++|..+++|++..+-         
T Consensus       324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~  403 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKD  403 (720)
T ss_pred             ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccc
Confidence            4689999999999999999999999888888999999999888763   3346667999999999985431         


Q ss_pred             ---eeeeEeeeccccCeeEEEEecCC
Q 047325          318 ---HTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       318 ---~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                         ......+++|...+..+.++-.+
T Consensus       404 s~v~~~~~rfk~~~p~~~nv~ss~~~  429 (720)
T KOG0321|consen  404 SIVYEYSRRFKGHLPQVLNVNSSLRK  429 (720)
T ss_pred             hhhhhhhhhhhccccccccccccccc
Confidence               12233445666666555555443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=8.9e-23  Score=169.72  Aligned_cols=259  Identities=15%  Similarity=0.122  Sum_probs=175.0

Q ss_pred             CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325           55 DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      +.+++++.|+.|++||+.+  ....+..+. .+.+++|+  ++.+ ++++.++.|++||..+++.......         
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------   71 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---------   71 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---------
Confidence            5788999999999999864  344455443 35678887  5565 5677899999999987653221110         


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (368)
                                             + ..+..+.++|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++++|++
T Consensus        72 -----------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg  126 (300)
T TIGR03866        72 -----------------------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG  126 (300)
T ss_pred             -----------------------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC
Confidence                                   2 224568899999877655 5689999999999888777763 3346789999999


Q ss_pred             -eEEEEcCCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceee-ec
Q 047325          209 -LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVL-KG  284 (368)
Q Consensus       209 -~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~  284 (368)
                       .++++..++ .+.+||.+...      ...... ....+..++|+|++++|+.+ ..++.|++||+++++...... ..
T Consensus       127 ~~l~~~~~~~~~~~~~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       127 KIVVNTSETTNMAHFIDTKTYE------IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             CEEEEEecCCCeEEEEeCCCCe------EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence             777776654 56778886542      111111 22345778999999988654 468999999999765432221 10


Q ss_pred             ---c----ceEEEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC---CcceEEE
Q 047325          285 ---H----KLAVLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST---SSCAQRW  353 (368)
Q Consensus       285 ---~----~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~---~~~~~~w  353 (368)
                         +    ...-.+++++++++++ .+.++.+.+||+++.  +.+..+ .+...+.+++|+|+++.++++   ++.+.+|
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence               1    1112567888987554 455778999998765  333333 245579999999999976543   3456666


Q ss_pred             EEeeC
Q 047325          354 IVYSG  358 (368)
Q Consensus       354 ~l~sg  358 (368)
                      .+.++
T Consensus       277 d~~~~  281 (300)
T TIGR03866       277 DVAAL  281 (300)
T ss_pred             ECCCC
Confidence            65544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.7e-26  Score=191.97  Aligned_cols=229  Identities=22%  Similarity=0.383  Sum_probs=193.8

Q ss_pred             eccCcCCcEEEEEe--cCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325           39 SLVREEGHIYSLAA--SKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        39 ~~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      .+..|...|.++..  +.+.+++|+.|..+-+|...+.  +..+.+|..+|.++.|+  ...|++|+.+|+|++||++..
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            45678888888875  4569999999999999988754  45688999999999998  668889999999999999966


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      ...                                +.+.+|...+.++.|+|-+.+++.|+.|+.+++||.+..-+...+
T Consensus       103 k~v--------------------------------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~  150 (825)
T KOG0267|consen  103 KIV--------------------------------RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY  150 (825)
T ss_pred             hhh--------------------------------hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence            532                                234569999999999999999999999999999999988999999


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ++|...+.++.|+|+| +++.++.|..++|||+..+      .....+..|++.+..+.|+|..-+++.|+.|+++++||
T Consensus       151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             cCCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence            9999999999999999 9999999999999999766      46778888999999999999999999999999999999


Q ss_pred             CCCccccceeeeccceEE--EEEEeCCCEEEEeeCCC
Q 047325          272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADK  306 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg  306 (368)
                      +++.+.+... ......+  ..|.+++..+++|..+.
T Consensus       225 letfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  225 LETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cceeEEeecc-CCccCCceeeeecCCceeeecCchhh
Confidence            9976554322 2223334  55667788888876654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=3.5e-24  Score=179.32  Aligned_cols=328  Identities=16%  Similarity=0.183  Sum_probs=227.8

Q ss_pred             eeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC------cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           36 LIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      ....+.||.+.|.+++|+  |++|++.|.|-+-|++-.-      .++...+.|....+|+++-  ...+++|.....+|
T Consensus       353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlR  432 (764)
T KOG1063|consen  353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLR  432 (764)
T ss_pred             eccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeee
Confidence            344578999999999998  6699999999999998654      3455667899999999987  45788888899999


Q ss_pred             EEeecCCCcc--------------ccccCCccccc----eeeeecc----------------CCCCceeEe---------
Q 047325          106 VWKISPKNQS--------------VHKRAGTLPTL----KDIFKSS----------------IKPSNYIEV---------  142 (368)
Q Consensus       106 vw~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~----------------~~~~~~~~~---------  142 (368)
                      +++....-..              ........+..    +..+...                ..+......         
T Consensus       433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~  512 (764)
T KOG1063|consen  433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN  512 (764)
T ss_pred             eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence            9986421000              00000000000    0000000                000000000         


Q ss_pred             -cccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC
Q 047325          143 -RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA  215 (368)
Q Consensus       143 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~  215 (368)
                       --.....+.||...|.+++.+|+++++++++..     ..|++|+..+-...+.+.+|.-.|+.++|+||+ +|++.+.
T Consensus       513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR  592 (764)
T KOG1063|consen  513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR  592 (764)
T ss_pred             ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence             001223457899999999999999999999864     369999999988888999999999999999999 9999999


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc--cccce-eeeccceEEEEE
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ--LSHGG-VLKGHKLAVLCL  292 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~~  292 (368)
                      |+++.+|....... .... ......|..-|..+.|+|++.++++++.|..|++|.....  +.... ....+...++++
T Consensus       593 DRt~sl~~~~~~~~-~e~~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv  670 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIK-DEFR-FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV  670 (764)
T ss_pred             CceEEeeeeecccc-hhhh-hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence            99999999854332 1111 2336789999999999999999999999999999998765  32222 334456666666


Q ss_pred             Ee-------CCCEEEEeeCCCeEEEEecCC-------Cceee---eEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          293 AA-------AGKLVFSGSADKTICVWRRDG-------AIHTC---LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       293 ~~-------~~~~l~~~~~dg~i~iw~~~~-------~~~~~---~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      +.       .+..++.|-+.|.|.+|....       .....   .....+|...|+.+.|.|...--  ...+.....|
T Consensus       671 ~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~--~~~~~~~l~l  748 (764)
T KOG1063|consen  671 AYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDD--WVEDKEWLNL  748 (764)
T ss_pred             EeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccc--cccccceeEE
Confidence            54       144788999999999998641       11111   11223577789999999863110  0011122258


Q ss_pred             eeCCcccccccC
Q 047325          356 YSGSLDKSDDDV  367 (368)
Q Consensus       356 ~sg~~D~~v~i~  367 (368)
                      +.|++|.++|++
T Consensus       749 a~~g~D~~vri~  760 (764)
T KOG1063|consen  749 AVGGDDESVRIF  760 (764)
T ss_pred             eeecccceeEEe
Confidence            899999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=159.78  Aligned_cols=269  Identities=18%  Similarity=0.231  Sum_probs=193.9

Q ss_pred             EEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           47 IYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        47 i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      ..|+.|+  |++||+|+.||.|.|||+.+  .-..+.+|..+|.+++|+  |+.|++++.|..|.+||+..+......+ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            5678887  77999999999999999874  345788999999999999  8999999999999999999887554443 


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeecCC---
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSAHD---  196 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---  196 (368)
                                                      ...+|+.+.|+|. .+.+++.-.+..-.+-++..++....-....   
T Consensus       105 --------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl  152 (405)
T KOG1273|consen  105 --------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL  152 (405)
T ss_pred             --------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence                                            5688999999994 3344444444445555554422111111111   


Q ss_pred             -CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          197 -DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       197 -~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                       ....+..|.+.| ++++|...|.+.++|..+..      +...+.-. ...|..+.++..|+.|+..+.|..|+.|+++
T Consensus       153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ccccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence             112233577888 99999999999999998652      33333323 3678999999999999999999999999976


Q ss_pred             Ccccc------c--e----eeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccc-cCeeEEEEecC
Q 047325          274 KQLSH------G--G----VLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHT-GPVKCLAVEED  339 (368)
Q Consensus       274 ~~~~~------~--~----~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~l~~~~~  339 (368)
                      .-...      .  .    ....-.=...||+-+|.|+++|+. ...++||.-..+  .+++.+.|.. ....++.|+|-
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--sLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--SLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--ceeeeecCCchhheeecccccc
Confidence            21111      0  0    001111223778889999998874 456999965554  7888888877 56889999999


Q ss_pred             CeeeecC-CcceEEEEEe
Q 047325          340 RDSSSST-SSCAQRWIVY  356 (368)
Q Consensus       340 ~~~~~~~-~~~~~~w~l~  356 (368)
                      ...+++- ++.+.+|..+
T Consensus       305 rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  305 RPIIASIASGVVYIWAVV  322 (405)
T ss_pred             eeeeeeccCCceEEEEee
Confidence            9987765 4557777654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=7.7e-24  Score=160.10  Aligned_cols=214  Identities=23%  Similarity=0.312  Sum_probs=163.9

Q ss_pred             cCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           79 KASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        79 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      ..|.+.|+++..+   |+++++|+.||.|.+||+++..........  ......               .....-.+|.-
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~---------------v~~~h~~~Hky  102 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI---------------VAKQHENGHKY  102 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee---------------ccccCCcccee
Confidence            4588999999987   899999999999999999876421111000  000000               00111234888


Q ss_pred             CEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCC
Q 047325          156 AVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       156 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      .|.++.|.| |...+.+++.|.++++||..+.+....|+ -++.|.+-+++|-.    ++++|..|-.|++.|+..+   
T Consensus       103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---  178 (397)
T KOG4283|consen  103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---  178 (397)
T ss_pred             eeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---
Confidence            999999999 66789999999999999999998888887 45678888888754    7888999999999999887   


Q ss_pred             cccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccc--------------eeeeccceEE--EEEE
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHG--------------GVLKGHKLAV--LCLA  293 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~~--~~~~  293 (368)
                         .....+.+|...|.++.|+|... .|++|+.||.|++||++...-..              .....|.+.+  +++.
T Consensus       179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence               46788999999999999999766 57889999999999987431111              1233566666  4555


Q ss_pred             eCCCEEEEeeCCCeEEEEecCCC
Q 047325          294 AAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       294 ~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      .++.++++++.|..+++|+...+
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ccchhhhhccCccceEEeecccC
Confidence            58999999999999999998765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=165.54  Aligned_cols=289  Identities=15%  Similarity=0.159  Sum_probs=207.5

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------ceecc-cCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------EFCGF-KASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      ..+-+.+|.+.|.++.|+.+  +|++|+.|..+++|++.+        ++... ..|...|.|++|+  +.++++|..++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            34568899999999999744  999999999999998653        22222 3467899999999  67899999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      +|..-|+++.+.+......                              ...+.|..+..+|..+.|++.+.++.|.+||
T Consensus       128 ~VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D  177 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFID  177 (609)
T ss_pred             eeEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEe
Confidence            9999999988754333211                              1345899999999999999999999999999


Q ss_pred             ccCCe-EEEE--eecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccccEEEEEEcCCCC
Q 047325          183 ISDSK-CLES--VSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQECAVTALVVSSSRS  256 (368)
Q Consensus       183 ~~~~~-~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~  256 (368)
                      .+..+ ++..  +.........+.|+|..  +|++.+..+.+.+||++....... ......+......-.+..|+|+|+
T Consensus       178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN  257 (609)
T ss_pred             ccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence            98755 2222  22234556788999987  889999999999999997643100 000011111122346788999999


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeeccc-------eEEEEEEe-CCCEEEEeeCCCeEEEEecCCCc-----------
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHK-------LAVLCLAA-AGKLVFSGSADKTICVWRRDGAI-----------  317 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~-----------  317 (368)
                      .|++--....-.+||+-+..++.... .|.       ..+.++.+ +..-+++|+.+-.|++|.+....           
T Consensus       258 Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~  336 (609)
T KOG4227|consen  258 QFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHD  336 (609)
T ss_pred             eehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcc
Confidence            99888777777888988755553222 222       12222333 34459999999999999874210           


Q ss_pred             ----------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          318 ----------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       318 ----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                ...+..+++|..-++.+.|+|...            .|++.+..+.+|+|
T Consensus       337 ~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~------------~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  337 EEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN------------LLVSSGVENSFKLW  384 (609)
T ss_pred             hhhCchhheecceeEEEecccccccceeecCCcc------------eEeccchhhheecc
Confidence                      123456789999999999999988            56666667777766

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.5e-23  Score=173.88  Aligned_cols=234  Identities=17%  Similarity=0.278  Sum_probs=181.4

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ....|.+++++  .+.||.+-.||.|.+|++...-......                              ..+....|.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi------------------------------~g~~drsIE   73 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI------------------------------HGPEDRSIE   73 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE------------------------------ecCCCCcee
Confidence            45689999998  7789999999999999998753211111                              112456899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      +++|.+. ..|++.+.+|.|.-||+.+++++..+....+.|++++.+|.+ .++.|+.||.+..++....    ......
T Consensus        74 ~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----~I~~~r  148 (691)
T KOG2048|consen   74 SLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----KITYKR  148 (691)
T ss_pred             eEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----eEEEEe
Confidence            9999954 568888889999999999999999999999999999999999 9999999997777776543    223334


Q ss_pred             eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce----eee---ccceEEEEEEe-CCCEEEEeeCCCeEE
Q 047325          238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG----VLK---GHKLAVLCLAA-AGKLVFSGSADKTIC  309 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~---~~~~~~~~~~~-~~~~l~~~~~dg~i~  309 (368)
                      .+...++.+.++.|+|++..+++|+.||.|++||..++.....    ...   ....-+.++.+ ....|++|...|+|.
T Consensus       149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~  228 (691)
T KOG2048|consen  149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVT  228 (691)
T ss_pred             ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEE
Confidence            4556678999999999999999999999999999987655431    111   11222222222 577899999999999


Q ss_pred             EEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceE
Q 047325          310 VWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQ  351 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~  351 (368)
                      +||...+  ..++.+..|..-|.+|+..+++..+.+++-+.+
T Consensus       229 FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  229 FWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             EEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence            9987776  778888999999999999999885444443333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.6e-24  Score=162.60  Aligned_cols=268  Identities=14%  Similarity=0.255  Sum_probs=197.5

Q ss_pred             CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccCCcccccee
Q 047325           55 DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  128 (368)
                      ..+|++...|.|++||..+  .+..++++...++.+.|.    ++.+.+|+.||+|++||++...+...+....      
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence            4789999999999999876  577899999999999996    5689999999999999999887655444321      


Q ss_pred             eeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEEEEe----CCCcEEEEEccCCeE-EEEe-ecCCCceEE
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLYTAS----WDRTFKVWRISDSKC-LESV-SAHDDAVNS  201 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~  201 (368)
                                              +. .+..+++.+-+++.+++|.    .+-.|.+||++..+. +..+ ..|...|++
T Consensus       115 ------------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~  170 (376)
T KOG1188|consen  115 ------------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ  170 (376)
T ss_pred             ------------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence                                    33 4567777776777777775    367899999998765 5444 469999999


Q ss_pred             EEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc
Q 047325          202 VVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       202 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +.|+|..  +|++|+.||-|.+||+.....   ...+.....+...|.++.|..++ +.|.+-+..+...+|+++.+...
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            9999988  999999999999999986522   22344556788889999999876 46888888999999999865433


Q ss_pred             ceeeec------------cceEEEEEEe-CCCEEEEeeC-CCeEEEEecCC----CceeeeEeeec-cccCeeEEEEecC
Q 047325          279 GGVLKG------------HKLAVLCLAA-AGKLVFSGSA-DKTICVWRRDG----AIHTCLSVLTG-HTGPVKCLAVEED  339 (368)
Q Consensus       279 ~~~~~~------------~~~~~~~~~~-~~~~l~~~~~-dg~i~iw~~~~----~~~~~~~~~~~-h~~~v~~l~~~~~  339 (368)
                      ......            -..-|-+.+| +....+.++. -|...++-+..    .....+..+.+ |..-|+++.|...
T Consensus       248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~  327 (376)
T KOG1188|consen  248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK  327 (376)
T ss_pred             hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence            211111            1122334444 3445555544 56666665431    12234445555 7778999999887


Q ss_pred             CeeeecCCcceEEEEEeeCCcccccccC
Q 047325          340 RDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.            .++|||+||.+.+|
T Consensus       328 ~~------------~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  328 ND------------VLYTGGEDGLLQAW  343 (376)
T ss_pred             cc------------eeeccCCCceEEEE
Confidence            77            78999999999988

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=177.41  Aligned_cols=238  Identities=18%  Similarity=0.204  Sum_probs=184.8

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      -.|....+.++|.  |++|++++.||.|++|+............                               .+...
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------------------------------~~g~~   58 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------------------------------ISGEL   58 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------------------------------ccCce
Confidence            3678888889987  88999999999999999876631111110                               05567


Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      |.+++..  ..+|++|+.+++|.+|...+++.-..+....-++++++++.+| +++.|+.|-.|++.+.....      .
T Consensus        59 v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~  130 (933)
T KOG1274|consen   59 VSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------Q  130 (933)
T ss_pred             eEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc------h
Confidence            7777764  4489999999999999999988776666677899999999999 99999999999999998764      4


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee---------ccceEEEEEEeCCCEEEEeeCCC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---------GHKLAVLCLAAAGKLVFSGSADK  306 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg  306 (368)
                      ...+.+|.++|.++.|+|++++||+.+.||.|++||+.++........         .......+|+|++..++....|+
T Consensus       131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~  210 (933)
T KOG1274|consen  131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN  210 (933)
T ss_pred             heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence            678899999999999999999999999999999999997654322111         12233477889988888888999


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|.+|+..+...........+...+..++|+|.|++            |++++.||.|-||
T Consensus       211 ~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y------------iAAs~~~g~I~vW  259 (933)
T KOG1274|consen  211 TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY------------IAASTLDGQILVW  259 (933)
T ss_pred             eEEEEccCCceeheeecccccccceEEEEEcCCCcE------------EeeeccCCcEEEE
Confidence            999998877633333333445566999999999995            5555555555555

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=4.4e-23  Score=157.95  Aligned_cols=263  Identities=16%  Similarity=0.214  Sum_probs=196.5

Q ss_pred             EEEecCC--EEEEccCCCcEEEEcCCcceec--------cc-------CCCCCeeEEEEe---------CCEEEEEeCCC
Q 047325           49 SLAASKD--LLYTGSDSKNIRVWKNLKEFCG--------FK-------ASSGLVKAIVIS---------GEKIFTGHQDG  102 (368)
Q Consensus        49 ~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~--------~~-------~~~~~v~~~~~~---------~~~l~s~~~dg  102 (368)
                      ...|+|+  -|++-+.|..+++|++......        +.       .....|...+|-         ..++++.+.|.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            4455555  8889999999999987532111        11       123445665553         45889999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC---EeEEEEcCCCCEEEEEeCCCcEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA---VSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      -|++||.-+++.......-.                              |.++   ..+++|+|||.+|++|. ...|+
T Consensus       134 PIh~wdaftG~lraSy~~yd------------------------------h~de~taAhsL~Fs~DGeqlfaGy-krcir  182 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYD------------------------------HQDEYTAAHSLQFSPDGEQLFAGY-KRCIR  182 (406)
T ss_pred             ceeeeeccccccccchhhhh------------------------------hHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence            99999999988654433211                              3333   35899999999999876 58999


Q ss_pred             EEEc-cCCeEEE---Ee----ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325          180 VWRI-SDSKCLE---SV----SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       180 iwd~-~~~~~~~---~~----~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (368)
                      ++|+ +.|+...   ++    .+..+-+.|++++|..  .++.|+....+-||.-...      .++..+.+|.+.|+.+
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHL  256 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeE
Confidence            9999 4443211   11    1235678899999977  8999999888888876544      3577788999999999


Q ss_pred             EEcCCCCEEEEecC-CCcEEEEeCCCccccceeeeccce----EE-EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325          250 VVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGVLKGHKL----AV-LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       250 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  323 (368)
                      +|.++|+.|++|.. |..|..||++....+...+..|..    +| ..+.|++++|++|+.||.|++||++.. ...+..
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv  335 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSV  335 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccc
Confidence            99999999999875 678999999977666556655544    23 566788999999999999999999773 244566


Q ss_pred             eeccccCeeEEEEecCCeeeecCCcc
Q 047325          324 LTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      +..|+.-++.++++|--.++|++++.
T Consensus       336 ~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccccccceecCcccceeeeccCc
Confidence            77789999999999998877777654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.92  E-value=4.3e-24  Score=158.89  Aligned_cols=285  Identities=16%  Similarity=0.149  Sum_probs=197.9

Q ss_pred             CceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eeccc-CCCCCeeEEEEe-CCEEEEEeCCCeEEEEe
Q 047325           34 NGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFK-ASSGLVKAIVIS-GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~  108 (368)
                      ...+..+.+|.+.|+++.|..+ +|.+|..-|.|++|++.+.  ...+. .+...|+.+..- ++.|.+-+.|+.+.+|+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT   83 (323)
T ss_pred             CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence            3445567799999999999854 8999999999999998744  45566 677788888776 68999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----C----CEEEEEeCCC-cE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----C----GLLYTASWDR-TF  178 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~~~~~d~-~i  178 (368)
                      +........                                   |.-.++++-|.+.     +    ..++.-+... .+
T Consensus        84 ia~s~~i~i-----------------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~  128 (323)
T KOG0322|consen   84 IAYSAFISI-----------------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET  128 (323)
T ss_pred             ccCcceEEE-----------------------------------eeeeccccccccceeccCCCcchhheecCCcccchh
Confidence            986442211                                   2222333333321     1    1111111110 12


Q ss_pred             EEEEccCCeEEEEee----cCCCceEEEEeCCC-C---eEEEEcCCCeEEEEEcCCCCCC----cccccceeeccccccE
Q 047325          179 KVWRISDSKCLESVS----AHDDAVNSVVSSSE-G---LIFTGSADGTVKVWKREQHGKG----TKHSLAQTLLKQECAV  246 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~---~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~i  246 (368)
                      ++-|......+....    +..+.+.|..+.-+ +   .+++|.++|.+.+||+..+...    ...+.......|..++
T Consensus       129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv  208 (323)
T KOG0322|consen  129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV  208 (323)
T ss_pred             hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence            333332222222221    23456777764332 2   7888999999999999876331    1122344556788999


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCc--cccc---eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ--LSHG---GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                      .++.+.+..+.=++|+.+..+..|.+...  ....   ...+.....-..+.||++.+++++.|++||||..++.  .++
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pL  286 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPL  286 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC--Cch
Confidence            99999987777788888889999988743  1111   1222223334778899999999999999999988876  788


Q ss_pred             EeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          322 SVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       322 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..++-|...|++++|+|+..            +++.+|.|+.|.+|
T Consensus       287 AVLkyHsagvn~vAfspd~~------------lmAaaskD~rISLW  320 (323)
T KOG0322|consen  287 AVLKYHSAGVNAVAFSPDCE------------LMAAASKDARISLW  320 (323)
T ss_pred             hhhhhhhcceeEEEeCCCCc------------hhhhccCCceEEee
Confidence            88999999999999999988            67888888888877

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.5e-21  Score=162.38  Aligned_cols=268  Identities=12%  Similarity=0.120  Sum_probs=178.0

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EE-EEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEE-eCCCe
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LL-YTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTG-HQDGK  103 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l-~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~  103 (368)
                      ..++.+..+..|.. +.+++++++  .+ ++++.++.|++||....  ...+..+.. +..++++  ++.++++ +.|+.
T Consensus        19 ~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~   96 (300)
T TIGR03866        19 ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL   96 (300)
T ss_pred             CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence            34556666665544 567888755  44 67788999999998753  233333333 4566676  6666554 56899


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-cEEEEE
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-TFKVWR  182 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd  182 (368)
                      |++||+.+.+......                                 +...+.+++|+|++++++++..++ .+.+||
T Consensus        97 l~~~d~~~~~~~~~~~---------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d  143 (300)
T TIGR03866        97 VTVIDIETRKVLAEIP---------------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFID  143 (300)
T ss_pred             EEEEECCCCeEEeEee---------------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence            9999998754322111                                 223457899999999999988765 467789


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccce-eeccccccEEEEEEcCCCCEEE
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      ..+++....+.. .....++.|++++ .++ ++..++.|++||++............ ...........++|+|++++++
T Consensus       144 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       144 TKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             CCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence            988877665543 3345788999999 554 44569999999998653211000000 0000111235688999999865


Q ss_pred             E-ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          260 C-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       260 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      + ...++.+.+||.++.+.......++....++++|++++|+++ +.+|.|++||+++.  +.+.++... ...+.++++
T Consensus       223 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~~-~~~~~~~~~  299 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL--KVIKSIKVG-RLPWGVVVR  299 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEEEcc-cccceeEeC
Confidence            5 455678999999876654333344555557788899999886 46899999999876  666677643 556888887


Q ss_pred             c
Q 047325          338 E  338 (368)
Q Consensus       338 ~  338 (368)
                      |
T Consensus       300 ~  300 (300)
T TIGR03866       300 P  300 (300)
T ss_pred             C
Confidence            5

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1e-23  Score=164.46  Aligned_cols=208  Identities=18%  Similarity=0.284  Sum_probs=164.3

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeC
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQ  100 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~  100 (368)
                      .....+.++.+|.+.=+.|+|++-   .|+||..-+.|++|...+.     ...+.+|+..|..|+|+   ...|++|+.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            556778899999999999999974   7889999999999987643     34577899999999997   679999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ||+|+|||++.+.......                              ...|...|+.|.|+....+|++|+.||+++|
T Consensus       279 DgsIrIWDiRs~~~~~~~~------------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVS------------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSI  328 (440)
T ss_pred             CceEEEEEecCCCccceeE------------------------------eeccCCceeeEEccCCcceeeecCCCceEEE
Confidence            9999999999875322211                              1239999999999998889999999999999


Q ss_pred             EEccC---CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC----------Ccccccceeeccc--c
Q 047325          181 WRISD---SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK----------GTKHSLAQTLLKQ--E  243 (368)
Q Consensus       181 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~--~  243 (368)
                      ||+++   ++++..++.|..+|+++.|+|..  .+++++.|..|.+||+.....          .....+.+.+.-|  +
T Consensus       329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ  408 (440)
T KOG0302|consen  329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ  408 (440)
T ss_pred             EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence            99985   57889999999999999999976  899999999999999864322          0000111222223  4


Q ss_pred             ccEEEEEEcCCC-CEEEEecCCCcEEEE
Q 047325          244 CAVTALVVSSSR-SIVYCGSSDGLVNFW  270 (368)
Q Consensus       244 ~~i~~~~~~~~~-~~l~~~~~dg~i~i~  270 (368)
                      ..+..+.|+++- -+|++.+.|| +.||
T Consensus       409 ke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  409 KEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             hHhhhheeccCCCCeEEEecccc-eeEE
Confidence            567788898854 3777778888 4444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=3.8e-23  Score=158.52  Aligned_cols=279  Identities=18%  Similarity=0.212  Sum_probs=195.9

Q ss_pred             ccCcCCcEEEEEec-------CCEEEEccCCCcEEEEcCCcc--eecc-----cCCCCCeeEEEEe------CCEEEEEe
Q 047325           40 LVREEGHIYSLAAS-------KDLLYTGSDSKNIRVWKNLKE--FCGF-----KASSGLVKAIVIS------GEKIFTGH   99 (368)
Q Consensus        40 ~~~h~~~i~~~~~~-------~~~l~s~~~dg~i~iw~~~~~--~~~~-----~~~~~~v~~~~~~------~~~l~s~~   99 (368)
                      ...|..+|..++|+       +..++|.+.+ .+.+|+....  ++.+     ..|......++|.      +-+++.|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            45788999999996       3377777764 6778876532  2222     2366677777776      33789999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTF  178 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  178 (368)
                      .-|.|+|.|+.+++...                                .+.+|...|+.+.++|+. +++++++.|..|
T Consensus       113 ~~GvIrVid~~~~~~~~--------------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSK--------------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             ceeEEEEEecchhhhcc--------------------------------ceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence            99999999998876433                                344599999999999964 689999999999


Q ss_pred             EEEEccCCeEEEEee---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC-------------cc---------
Q 047325          179 KVWRISDSKCLESVS---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG-------------TK---------  232 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-------------~~---------  232 (368)
                      ++|++++..++..+.   +|...|.++.|++++ ++++++.|.+|++|++....-.             ..         
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            999999999998875   589999999999999 9999999999999999732110             00         


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-ccccc------------eeeeccc--eEEEEEEe--C
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSHG------------GVLKGHK--LAVLCLAA--A  295 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~------------~~~~~~~--~~~~~~~~--~  295 (368)
                      .+.......|...|.|+.|-  |+++++=+-++.|..|...+ .+...            ..+.-..  ..-+.+++  -
T Consensus       241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence            00001223455666666664  57899988899999998721 11100            0111111  12233444  4


Q ss_pred             CCEEEEeeCCCeEEEEecCCCceeeeEeeec--cccCeeEEEEecCCeeeecCCcceEEE
Q 047325          296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSCAQRW  353 (368)
Q Consensus       296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~w  353 (368)
                      ++.|+.|...|.|++||++........++..  ....|...+|+.|+.+++....+..+|
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW  378 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence            8899999999999999998764433333322  234699999999999654444444333

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-23  Score=185.87  Aligned_cols=237  Identities=14%  Similarity=0.257  Sum_probs=188.3

Q ss_pred             CcEEEEEec--CC----EEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325           45 GHIYSLAAS--KD----LLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        45 ~~i~~~~~~--~~----~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw  107 (368)
                      .+-+.|+|.  ++    +||.|..||.|.+||....        +..+..|.+.|..+.|+   ++.|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            446678874  22    6999999999999997642        44678899999999998   7799999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      |+.+.+........                              ...+.|.+++|+.. ...|++++.+|.+.|||++..
T Consensus       145 Dlnn~~tP~~~~~~------------------------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQ------------------------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             ccCCcCCCCCCCCC------------------------------CCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            99986543332110                              04578999999874 457888899999999999999


Q ss_pred             eEEEEeecCCC--ceEEEEeCCCC--eEEEEcCCC---eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEE
Q 047325          187 KCLESVSAHDD--AVNSVVSSSEG--LIFTGSADG---TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIV  258 (368)
Q Consensus       187 ~~~~~~~~~~~--~v~~~~~~~~~--~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  258 (368)
                      +++..+..+..  .+..++|+|++  .+++++.|.   .|.+||+|....     +.+.+..|+..|.++.|++.+ .+|
T Consensus       195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~ll  269 (1049)
T KOG0307|consen  195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLL  269 (1049)
T ss_pred             CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhh
Confidence            88888876654  47789999998  777776654   699999996543     677778999999999999965 899


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCc
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAI  317 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~  317 (368)
                      ++++.|++|.+|+.++++.+. .+......+..+++   +...+++++-||.|.||.+.+..
T Consensus       270 lSsgkD~~ii~wN~~tgEvl~-~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPNTGEVLG-ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hcccCCCCeeEecCCCceEee-ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999999987763 44445555655555   35589999999999999986543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=1.5e-22  Score=159.51  Aligned_cols=286  Identities=16%  Similarity=0.250  Sum_probs=191.5

Q ss_pred             CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-----------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-----------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ..+|.++.|.++   .|+||+.|..|++|.+...           ...+..|...|+++.|+  |+.|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            456888888644   8999999999999976421           23567899999999999  7799999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      ....-.... ....          ......     .-.....+.+|.+.|..++|+|++.++++++.|+.+++||+..|+
T Consensus        93 k~~~~~~~~-~d~e----------~~~~ke-----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   93 KQGDVRIFD-ADTE----------ADLNKE-----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EecCcCCcc-ccch----------hhhCcc-----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            877522110 0000          000000     011234556699999999999999999999999999999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc---------------cceee--ccccccEEEE
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS---------------LAQTL--LKQECAVTAL  249 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~--~~~~~~i~~~  249 (368)
                      ....+..|...+..++|.|-+ ++++-+.|...+.+.+..........               ..+.+  .....-...+
T Consensus       157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            999999999999999999988 88888888877766654332111100               00000  0112345678


Q ss_pred             EEcCCCCEEEEecC----CC-----cEEEEeCCCccccceeeeccceEEEEEE---------e-----------CCCEEE
Q 047325          250 VVSSSRSIVYCGSS----DG-----LVNFWEREKQLSHGGVLKGHKLAVLCLA---------A-----------AGKLVF  300 (368)
Q Consensus       250 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------~-----------~~~~l~  300 (368)
                      +|+|+|.+|++...    .+     ..++|+-..-..+...+.......+.+.         |           .+-.++
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            89999999988542    22     2355554433333222222222222111         1           123345


Q ss_pred             EeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecCCc
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSSTSS  348 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~  348 (368)
                      .++ .+.|++||.+..  .++... .-|-.+|++++|++||..++.++-
T Consensus       317 iAt-~~svyvydtq~~--~P~~~v~nihy~~iTDiaws~dg~~l~vSS~  362 (434)
T KOG1009|consen  317 IAT-KNSVYVYDTQTL--EPLAVVDNIHYSAITDIAWSDDGSVLLVSST  362 (434)
T ss_pred             Eee-cceEEEeccccc--cceEEEeeeeeeeecceeecCCCcEEEEecc
Confidence            555 457999987664  444433 458899999999999996554443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-22  Score=153.78  Aligned_cols=244  Identities=13%  Similarity=0.155  Sum_probs=169.8

Q ss_pred             eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      ..|+.|+  |.+|++|+.||.|.|||+.+.....                                .+.+|..+|++++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--------------------------------~lsaH~~pi~sl~W   73 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--------------------------------MLSAHVRPITSLCW   73 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh--------------------------------hhhccccceeEEEe
Confidence            6788898  9999999999999999999876322                                23349999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL  240 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  240 (368)
                      +++|+.|++++.|..|.+||+..|.+++.+. ...+|....|+|..  ..++.-.+..-.+-++..+..    ..+..-.
T Consensus        74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~  148 (405)
T KOG1273|consen   74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDD  148 (405)
T ss_pred             cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCC
Confidence            9999999999999999999999999999887 57889999999976  555544455555555543211    1111110


Q ss_pred             --cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          241 --KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       241 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                        .......+..|.+.|+++++|...|.+.++|..+.+.........  ...-.-++..|+.|+.-+.|..||.|++..-
T Consensus       149 d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  149 DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             ccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence              111122334688999999999999999999999865543222211  2223556678999999999999999987521


Q ss_pred             -------ceeeeEeeec--cccCeeEEEEecCCeeeecCCcc---eEEEEEeeCCcccccccCC
Q 047325          317 -------IHTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSC---AQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       317 -------~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~---~~~w~l~sg~~D~~v~i~h  368 (368)
                             ..++.+.+..  ...+-.+++|+.+|.++..++..   ..+|.=-+|   .-|||.|
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILh  289 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILH  289 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeec
Confidence                   1111111111  12345688999999998877643   444443333   3455544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-23  Score=157.27  Aligned_cols=209  Identities=15%  Similarity=0.173  Sum_probs=154.9

Q ss_pred             ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----EeecCCCceEEEEeCCCC--eEEEEcCCCeE
Q 047325          146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----SVSAHDDAVNSVVSSSEG--LIFTGSADGTV  219 (368)
Q Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i  219 (368)
                      ....+.+|.+.|++++|+.||++|++++.|+.|++||++......    ...-..+..+.+.|.||-  .++..-...++
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            345678899999999999999999999999999999997643210    011112356788999998  66677777899


Q ss_pred             EEEEcCCCCCCcccccc------eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEEEEE
Q 047325          220 KVWKREQHGKGTKHSLA------QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAVLCL  292 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~  292 (368)
                      ++|.+.....+......      .....|+..+..+-...++.+|++++.|..|.+|+++ ++.+..... .....-.++
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            99987543322111111      1123456667777777888999999999999999999 444433222 223344788


Q ss_pred             EeCCCEEEEeeCCCeEEEEecC---CC---ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          293 AAAGKLVFSGSADKTICVWRRD---GA---IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       293 ~~~~~~l~~~~~dg~i~iw~~~---~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      +|+|++|++++-.--|++|.+-   .+   .-..+..+++|...|..++|+++..            .++|.|.||++|+
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~------------r~vtvSkDG~wri  304 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST------------RAVTVSKDGKWRI  304 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc------------eeEEEecCCcEEE
Confidence            9999999999999899999862   11   1234667899999999999999999            7889999999998


Q ss_pred             C
Q 047325          367 V  367 (368)
Q Consensus       367 ~  367 (368)
                      |
T Consensus       305 w  305 (420)
T KOG2096|consen  305 W  305 (420)
T ss_pred             e
Confidence            8

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=162.54  Aligned_cols=229  Identities=12%  Similarity=0.225  Sum_probs=178.4

Q ss_pred             CCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325           82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus        82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                      .+.|+++.|.  ...|++++.||++++|.++..........                              .-...+|.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~------------------------------~l~~fPi~~  262 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI------------------------------HLEKFPIQK  262 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee------------------------------eeccCccce
Confidence            4679999998  56899999999999999987653322111                              114578999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEEccCCeEEE--EeecCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325          160 MSLDQDCG-LLYTASWDRTFKVWRISDSKCLE--SVSAHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       160 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  234 (368)
                      ..|.|+|. .+++++....++.||+.+.+...  ...++. ..+.....++++ +|+..+..|.|.+....+..      
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e------  336 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE------  336 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh------
Confidence            99999998 89999999999999998876543  233333 356777889998 99999999999999876542      


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                       ...-....+.+..++|+.+++.|++.+.+|.|++||++...........-  ....+|.++++.+||+|+..|.|.|||
T Consensus       337 -li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  337 -LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             -hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence             22223456789999999999999999999999999999876554333322  234467778999999999999999999


Q ss_pred             cCC----CceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          313 RDG----AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       313 ~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      .++    ...+++..+..-...|++|.|++|++++|-++
T Consensus       416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS  454 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS  454 (514)
T ss_pred             cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence            643    34577777777788999999999999877444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-22  Score=164.20  Aligned_cols=204  Identities=15%  Similarity=0.196  Sum_probs=171.1

Q ss_pred             CEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           55 DLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      -++++|+..+.|+|||+...+  ..++.|...|+++.++  +.||++++..|.|.|..+.++.....+...         
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---------  162 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID---------  162 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC---------
Confidence            489999999999999998543  4578999999999998  789999999999999999888654433321         


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG  208 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~  208 (368)
                                            ....|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...++|+|.+
T Consensus       163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn  220 (673)
T KOG4378|consen  163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN  220 (673)
T ss_pred             ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence                                  345667899999655 6778899999999999887777655 5699999999999988


Q ss_pred             --eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc
Q 047325          209 --LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK  286 (368)
Q Consensus       209 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  286 (368)
                        +|++.+.|..|.+||.+...       .........+...++|.++|.+|++|...|.|..||++..+.+......|.
T Consensus       221 e~l~vsVG~Dkki~~yD~~s~~-------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~  293 (673)
T KOG4378|consen  221 EALLVSVGYDKKINIYDIRSQA-------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD  293 (673)
T ss_pred             cceEEEecccceEEEeeccccc-------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence              89999999999999998542       222334566789999999999999999999999999999888889999999


Q ss_pred             eEEEEEEeCC
Q 047325          287 LAVLCLAAAG  296 (368)
Q Consensus       287 ~~~~~~~~~~  296 (368)
                      ..|.++++..
T Consensus       294 ~sVt~vafq~  303 (673)
T KOG4378|consen  294 ASVTRVAFQP  303 (673)
T ss_pred             cceeEEEeee
Confidence            9998888753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.8e-22  Score=166.64  Aligned_cols=238  Identities=18%  Similarity=0.262  Sum_probs=181.7

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+.+|.+.|.+|..+  |..|++|+.||+|+||.+.++.++....                                 ..
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~d  441 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------FD  441 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------ec
Confidence            478999999999987  9999999999999999999998766554                                 44


Q ss_pred             CCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCe-------------------------------------EEEEeecC
Q 047325          155 DAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSK-------------------------------------CLESVSAH  195 (368)
Q Consensus       155 ~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~-------------------------------------~~~~~~~~  195 (368)
                      +.|.|++|+|.+.  .||++-. ..+.|.+..-|.                                     -+...-.|
T Consensus       442 ~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~  520 (733)
T KOG0650|consen  442 SEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH  520 (733)
T ss_pred             ceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec
Confidence            6789999998654  3444433 335555432210                                     01122246


Q ss_pred             CCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          196 DDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ...|+.+.|+..| +|++...   ...|.|+++....      ....+....+.+.++.|+|...+|++++. ..|++||
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYd  593 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK------SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYD  593 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEeccccc------ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEe
Confidence            7789999999999 8887765   3578999987542      23344556678999999999999988875 6799999


Q ss_pred             CCCccccceeeecc-ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcce
Q 047325          272 REKQLSHGGVLKGH-KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCA  350 (368)
Q Consensus       272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~  350 (368)
                      +..+........+. ....+++++.|.-|+.|+.|+.+..||++... ++.+++.-|...+++++|++.-.         
T Consensus       594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP---------  663 (733)
T KOG0650|consen  594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP---------  663 (733)
T ss_pred             hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc---------
Confidence            98765554433332 23336777889999999999999999998653 56778888999999999999998         


Q ss_pred             EEEEEeeCCcccccccCC
Q 047325          351 QRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       351 ~~w~l~sg~~D~~v~i~h  368 (368)
                         ++++|+.||++.|||
T Consensus       664 ---Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  664 ---LFASGSDDGTVIVFH  678 (733)
T ss_pred             ---eeeeecCCCcEEEEe
Confidence               899999999999998

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=3e-21  Score=145.76  Aligned_cols=264  Identities=19%  Similarity=0.223  Sum_probs=191.0

Q ss_pred             CCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeCC-------CeEEEEeecCCCccccccCCccccce
Q 047325           63 SKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQD-------GKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        63 dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      |+.|.+.++..+     ...|..|.+.|..++-+   ...|+++..+       -.+.||.+...........-  ..  
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl--E~--  114 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL--EC--  114 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh--hH--
Confidence            567777665532     23567788889888876   4566666542       23779988755432110000  00  


Q ss_pred             eeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE-EEEee-----cCCCceE
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC-LESVS-----AHDDAVN  200 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-----~~~~~v~  200 (368)
                                         +..+ ..+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+.     .+....+
T Consensus       115 -------------------v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft  174 (370)
T KOG1007|consen  115 -------------------VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFT  174 (370)
T ss_pred             -------------------hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceec
Confidence                               0000 01556899999999999998876 78999999987765 33332     2445677


Q ss_pred             EEEeCC--CCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccc
Q 047325          201 SVVSSS--EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       201 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      +-+|+|  ++..+....|+++..||+|+..+     .......|...+..+.|+|+.+ +|++++.||.|++||.+..+.
T Consensus       175 sg~WspHHdgnqv~tt~d~tl~~~D~RT~~~-----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~  249 (370)
T KOG1007|consen  175 SGAWSPHHDGNQVATTSDSTLQFWDLRTMKK-----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF  249 (370)
T ss_pred             ccccCCCCccceEEEeCCCcEEEEEccchhh-----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence            788998  34556667799999999996533     2333456778899999999765 788999999999999999888


Q ss_pred             cceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCC---------------------------ceeeeEeeecc
Q 047325          278 HGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGA---------------------------IHTCLSVLTGH  327 (368)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~---------------------------~~~~~~~~~~h  327 (368)
                      +...+.+|.-.+.++.++   .++|++|+.|..|.+|....-                           ..-.+.++..|
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            889999999999887764   679999999999999964210                           01234567789


Q ss_pred             ccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      ...|.+++|+.-..           |.+++-|.||.+.|
T Consensus       330 EDSVY~~aWSsadP-----------WiFASLSYDGRviI  357 (370)
T KOG1007|consen  330 EDSVYALAWSSADP-----------WIFASLSYDGRVII  357 (370)
T ss_pred             ccceEEEeeccCCC-----------eeEEEeccCceEEe
Confidence            99999999998888           78999999998754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-20  Score=139.32  Aligned_cols=274  Identities=17%  Similarity=0.226  Sum_probs=182.5

Q ss_pred             EEecCCEEEEccCCCcEEEEcCCc------------ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           50 LAASKDLLYTGSDSKNIRVWKNLK------------EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        50 ~~~~~~~l~s~~~dg~i~iw~~~~------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      ++..+.+|+.|..+|+|.+..+..            .+...++|.++|+.++|..++|++|+ ||.|+-|..+...+...
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLA   96 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhcc
Confidence            344456999999999999997531            23456899999999999999999888 59999998876543111


Q ss_pred             cc-CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325          118 KR-AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD  196 (368)
Q Consensus       118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  196 (368)
                      .+ .-.....                    ..+-.-.--.|+++...|..+-++.++.|+.++-||+++|+...++++|.
T Consensus        97 ~K~lwe~~~P--------------------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   97 TKRLWEVKIP--------------------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             chhhhhhcCc--------------------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence            11 0000000                    00000022468899999987777777789999999999999999999999


Q ss_pred             CceEEEEe-CCCCeEEEEcCCCeEEEEEcCCCCCCcccccc---eeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          197 DAVNSVVS-SSEGLIFTGSADGTVKVWKREQHGKGTKHSLA---QTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       197 ~~v~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ..|.++.- +..+.+++|++||++++||.++.+......+.   ..+..+ ...|-+++.  +..++++|+. ..+.+|.
T Consensus       157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwh  233 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWH  233 (325)
T ss_pred             ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEe
Confidence            99999987 45559999999999999999987432111110   111111 234555555  5668888764 5699999


Q ss_pred             CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC-eeeecCCcce
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR-DSSSSTSSCA  350 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~  350 (368)
                      ++..+...  ...-+.++..+.++.+.+++++..+.|.-|.+...   ........+...++..|+..- +++..+..+.
T Consensus       234 Lrsse~t~--vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv---l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~  308 (325)
T KOG0649|consen  234 LRSSESTC--VFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV---LQANIPVESTACYSASWQTSPIKFISIAGFSN  308 (325)
T ss_pred             ccCCCceE--EEecccceeEeeeecceEEEeccccceeeeeeccE---EEEeccCCccceeeecccCCceEEEEecccce
Confidence            99866542  22334556677788889999998889999977542   222233333344555554333 2333333344


Q ss_pred             EE
Q 047325          351 QR  352 (368)
Q Consensus       351 ~~  352 (368)
                      ++
T Consensus       309 ~~  310 (325)
T KOG0649|consen  309 KL  310 (325)
T ss_pred             ee
Confidence            44

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=5.1e-22  Score=167.42  Aligned_cols=238  Identities=16%  Similarity=0.190  Sum_probs=186.4

Q ss_pred             CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-----CCEEEEEeCCCeEEEEeecCC
Q 047325           42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-----GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      +-...+.+++.+++  .||+|..-|+++||++..  ..+....|...|.|+.++     ...|++++.|..|.|+|+..+
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            34556888888766  999999999999999874  456678999999999998     458999999999999998755


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeEEE
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCLE  190 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~  190 (368)
                      -...                               ..+.+|...|+++.|--+|  ..+++++.|..|.+--.+....-.
T Consensus       537 y~l~-------------------------------qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~  585 (1080)
T KOG1408|consen  537 YDLV-------------------------------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR  585 (1080)
T ss_pred             cchh-------------------------------hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence            3222                               2334599999999998766  688999999876553332111111


Q ss_pred             Eeec-----CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          191 SVSA-----HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       191 ~~~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      .+..     ....+..++..|.. ++++++.|..|+|||+..++.   .+..+.-..|++....+...|.|.||++.+.|
T Consensus       586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq---~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ---VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce---eeeecccccCCCceEEEEECCCccEEEEeecC
Confidence            1221     23568899999988 999999999999999988743   12222334566778889999999999999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecC
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .++.++|+-++++. ....+|...|+.  |.+|-+.|++.+.||.|.||.+.
T Consensus       663 ktl~~~Df~sgEcv-A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  663 KTLCFVDFVSGECV-AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             CceEEEEeccchhh-hhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            99999999998877 566788887755  55688999999999999999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=6.5e-22  Score=165.68  Aligned_cols=264  Identities=14%  Similarity=0.221  Sum_probs=198.8

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .|..++|.|+  .|+.+.. ..+.+||+..  .++++++|...|++++++  |+.+++|+.|..|.+|+..-.....   
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk---   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK---   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee---
Confidence            7888888765  4444433 3688999874  577899999999999998  8999999999999999865433211   


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV  199 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  199 (368)
                                                     ..|.+.|.|+.|+|-...|++|+. ...-+|......... .+ ....+
T Consensus        90 -------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~k-ss~R~  135 (1081)
T KOG1538|consen   90 -------------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-HK-SSSRI  135 (1081)
T ss_pred             -------------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-hh-hheeE
Confidence                                           129999999999999889999986 457889876543222 21 34578


Q ss_pred             EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-----CEEEEecCCCcEEEEeCC
Q 047325          200 NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-----SIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       200 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~  273 (368)
                      .+++|..|| +++.|-.||+|.+-+-...    ....+....+...+|.+++|+|+.     ..+++.....++.+|.+.
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence            899999999 9999999999999865432    222333445577899999999953     477888888888888887


Q ss_pred             CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW  353 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w  353 (368)
                      ....-.....+......+..++|.++..|+.|+.+++|.   ..+..+.++......|+.++..|+++            
T Consensus       212 G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT---R~GvrLGTvg~~D~WIWtV~~~PNsQ------------  276 (1081)
T KOG1538|consen  212 GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT---RDGVRLGTVGEQDSWIWTVQAKPNSQ------------  276 (1081)
T ss_pred             ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe---ecCeEEeeccccceeEEEEEEccCCc------------
Confidence            543322222233334456667999999999999999994   33467777777888999999999999            


Q ss_pred             EEeeCCccccccc
Q 047325          354 IVYSGSLDKSDDD  366 (368)
Q Consensus       354 ~l~sg~~D~~v~i  366 (368)
                      .++.|+.||+|--
T Consensus       277 ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  277 YVVVGCQDGTIAC  289 (1081)
T ss_pred             eEEEEEccCeeeh
Confidence            6777888888743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-22  Score=179.53  Aligned_cols=247  Identities=15%  Similarity=0.233  Sum_probs=185.0

Q ss_pred             CCCeeEEEEe--CC----EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           82 SGLVKAIVIS--GE----KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        82 ~~~v~~~~~~--~~----~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      ....+.++|.  +.    .|+.|..||.|.+||..........                          .....+..|.+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~--------------------------~~la~~~~h~G  117 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE--------------------------EVLATKSKHTG  117 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcch--------------------------HHHhhhcccCC
Confidence            4567788886  33    5888999999999998753100000                          00111223999


Q ss_pred             CEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325          156 AVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       156 ~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      .|..+.|++.. +.|++|+.||.|.|||+...+.-....  .....|.+++|+..-  .|++++.+|.+.|||+|.... 
T Consensus       118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-  196 (1049)
T KOG0307|consen  118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-  196 (1049)
T ss_pred             ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-
Confidence            99999999955 499999999999999998755443332  245679999999876  899999999999999996532 


Q ss_pred             cccccceeeccc--cccEEEEEEcCCCC-EEEEecCCC---cEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEE
Q 047325          231 TKHSLAQTLLKQ--ECAVTALVVSSSRS-IVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFS  301 (368)
Q Consensus       231 ~~~~~~~~~~~~--~~~i~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~  301 (368)
                           +..+..+  ...+..++|+|+.. .|++++.|.   .|.+||+|....+...+.+|...++++++   |.++|++
T Consensus       197 -----ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS  271 (1049)
T KOG0307|consen  197 -----IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS  271 (1049)
T ss_pred             -----ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence                 2223222  24578999999764 566666553   69999999877777888999999999887   4689999


Q ss_pred             eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecC--CcceEEEEEeeCCccc
Q 047325          302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSST--SSCAQRWIVYSGSLDK  362 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~--~~~~~~w~l~sg~~D~  362 (368)
                      ++.|+.|.+|+.+++  +.+..+....+.+..+.|+|... .++.+  ++.+.++-+-+++.++
T Consensus       272 sgkD~~ii~wN~~tg--Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~  333 (1049)
T KOG0307|consen  272 SGKDNRIICWNPNTG--EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL  333 (1049)
T ss_pred             ccCCCCeeEecCCCc--eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence            999999999988876  88889988889999999999887 33333  4566666666665443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.8e-22  Score=162.64  Aligned_cols=293  Identities=17%  Similarity=0.237  Sum_probs=214.2

Q ss_pred             CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceec---ccCCCCCeeEEEEe----CCEEEEEeCCC
Q 047325           32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCG---FKASSGLVKAIVIS----GEKIFTGHQDG  102 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~v~~~~~~----~~~l~s~~~dg  102 (368)
                      .+..+...|..|.+.|..|.|+  |+.|++|+.|..|.+||.......   ..+|...|..-.|-    ...+++++.||
T Consensus       130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            3445667789999999999997  679999999999999997754333   34676666655554    45799999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVW  181 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw  181 (368)
                      .+++=.+.........                             ..+..|.++|.-++.-|+. ..|.+++.|+.+.-+
T Consensus       210 qvr~s~i~~t~~~e~t-----------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  210 QVRVSEILETGYVENT-----------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             ceeeeeeccccceecc-----------------------------eecccccCccceeeecCCCCCcccccccccceeee
Confidence            9998877654432211                             1122399999999999954 578999999999999


Q ss_pred             EccCCeEEEEee---cCCC---ceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccce------eeccccccEE
Q 047325          182 RISDSKCLESVS---AHDD---AVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQ------TLLKQECAVT  247 (368)
Q Consensus       182 d~~~~~~~~~~~---~~~~---~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~i~  247 (368)
                      |++++.+...+.   .+..   ....++..|..  .+++++.|..+++||.+...+......+.      ........|+
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            999876544332   2333   56788888877  89999999999999998654321111111      1223346799


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCC--c----------cccceeeeccceE--EEEEE---eCCCEEEEeeCCCeEEE
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREK--Q----------LSHGGVLKGHKLA--VLCLA---AAGKLVFSGSADKTICV  310 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~----------~~~~~~~~~~~~~--~~~~~---~~~~~l~~~~~dg~i~i  310 (368)
                      +++|+.++.-|+++-.|-.|++|.-..  +          ......+++|...  |..+.   |...++++|+.-|.|.|
T Consensus       341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence            999998888788888888899995331  1          1222346777643  34444   45789999999999999


Q ss_pred             EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |+-.+.  +.+..+.+-..-|+||.-+|--.            +|++.|.|.-||||
T Consensus       421 W~K~t~--eii~~MegDr~VVNCLEpHP~~P------------vLAsSGid~DVKIW  463 (559)
T KOG1334|consen  421 WDKKTG--EIIRFMEGDRHVVNCLEPHPHLP------------VLASSGIDHDVKIW  463 (559)
T ss_pred             Eecchh--HHHHHhhcccceEeccCCCCCCc------------hhhccCCccceeee
Confidence            977665  66777777666899999999988            67777777777777

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=5.2e-22  Score=152.39  Aligned_cols=241  Identities=16%  Similarity=0.304  Sum_probs=173.8

Q ss_pred             cCCcEEEEEec-----CC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325           43 EEGHIYSLAAS-----KD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        43 h~~~i~~~~~~-----~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~  111 (368)
                      |...-+.+++.     ++ ++|.|+.-|.|||.|+.+.  ...+.+|...|+.+.+.   .+++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            44445555552     34 8999999999999998754  45688999999999998   56999999999999999998


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-  190 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-  190 (368)
                      ..+...+-.                             +.||.+.|.++.|++++.+|++++.|.+|++|++...+... 
T Consensus       168 ~~Cv~VfGG-----------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  168 DVCVAVFGG-----------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             CeEEEEecc-----------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            876544332                             24599999999999999999999999999999997432111 


Q ss_pred             ---------------------------EeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC--------ccccc
Q 047325          191 ---------------------------SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG--------TKHSL  235 (368)
Q Consensus       191 ---------------------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~  235 (368)
                                                 +-.-|...|.|+.|-- .++++-+-++.|..|..-..++.        .....
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti  297 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI  297 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceee
Confidence                                       1112455566666543 37888888999999988221110        00111


Q ss_pred             ceeeccccccEEE--EEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-----ceEEEEEEeCCCEEEEeeCCCeE
Q 047325          236 AQTLLKQECAVTA--LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-----KLAVLCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       236 ~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~i  308 (368)
                      ...+.-....|.-  .+|.|-++.|+.|...|.|++||++...........|     ...-.+|+-|+.+|+...+|++|
T Consensus       298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence            2222333344444  4566778899999999999999999766543222222     23337888899999999999999


Q ss_pred             EEEec
Q 047325          309 CVWRR  313 (368)
Q Consensus       309 ~iw~~  313 (368)
                      --||.
T Consensus       378 wrwdr  382 (385)
T KOG1034|consen  378 WRWDR  382 (385)
T ss_pred             EEEEe
Confidence            99874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=3.7e-21  Score=151.23  Aligned_cols=201  Identities=18%  Similarity=0.339  Sum_probs=159.9

Q ss_pred             eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325           39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGK  103 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~  103 (368)
                      .+.||+++|..++|++-   .||+||.|.+|.||++..         ....+.+|...|.-+.|.   .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            46799999999999743   999999999999998642         355688999999999998   789999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |.+|++.+++......                                 |.+.|.++.|+.||.+|++.+.|..|+|||.
T Consensus       156 v~iWnv~tgeali~l~---------------------------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD---------------------------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             EEEEeccCCceeeecC---------------------------------CCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence            9999999997544322                                 9999999999999999999999999999999


Q ss_pred             cCCeEEEEeecCCCc-eEEEEeCCCCeEEEEc----CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          184 SDSKCLESVSAHDDA-VNSVVSSSEGLIFTGS----ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ++++.+..-.+|.+. -..+.|..++.+++.+    ++..+-+||......    ............|.---|.++.+++
T Consensus       203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e----P~~~~elDtSnGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE----PIALQELDTSNGVLLPFYDPDTSIV  278 (472)
T ss_pred             CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC----cceeEEeccCCceEEeeecCCCCEE
Confidence            999999988888753 3445566677555554    377899999876543    1222222344567667788888876


Q ss_pred             E-EecCCCcEEEEeCCCcc
Q 047325          259 Y-CGSSDGLVNFWEREKQL  276 (368)
Q Consensus       259 ~-~~~~dg~i~i~d~~~~~  276 (368)
                      . +|-.|+.|+.|.+....
T Consensus       279 Yl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EEEecCCcceEEEEecCCC
Confidence            5 46679999999987544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.7e-22  Score=161.80  Aligned_cols=265  Identities=21%  Similarity=0.316  Sum_probs=183.9

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----------cceecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      .++..|.+.|+.++|.+-  .|++|+.||++++|++.          .++.+|.+|.++|.|+++.  ++.+++|+-||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            378889999999999755  89999999999999983          3467899999999999997  889999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |+.|++....-......                      ...-...+.||.+.|+.+++++....|++++.||++++|+.
T Consensus       368 I~~w~~p~n~dp~ds~d----------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYD----------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             eeeeccCCCCCcccccC----------------------cchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            99998863221110000                      00112456789999999999999899999999999999998


Q ss_pred             cCCeEEEEeecC--CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCCCCEE
Q 047325          184 SDSKCLESVSAH--DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       184 ~~~~~~~~~~~~--~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ....+ .++...  .+.-.++.+....  ..++...-+.-.+++........... ...........+..+..+|...+.
T Consensus       426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~  504 (577)
T KOG0642|consen  426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT  504 (577)
T ss_pred             CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence            76665 333322  2233445544333  33333333333333333221100000 000011112446778889999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT  328 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~  328 (368)
                      +++..|+.|+++|..++... .....|...+.  ++.++|.+|++|+.||.+++|.++..  .++.....|.
T Consensus       505 ~~~hed~~Ir~~dn~~~~~l-~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k--~~~~es~~~r  573 (577)
T KOG0642|consen  505 FTAHEDRSIRFFDNKTGKIL-HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK--TCVLESTAHR  573 (577)
T ss_pred             EecccCCceecccccccccc-hheeeccceecceeecCCCceEEeecCCceeehhhccch--heeecccccc
Confidence            99999999999999987666 45556776664  55578999999999999999988765  4555555454

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=1.7e-20  Score=141.91  Aligned_cols=266  Identities=15%  Similarity=0.174  Sum_probs=188.2

Q ss_pred             cEEEEEec-----CCEEEEccC----CCcEEEEcCCcc---ee--cccCCCCCeeEEEEe-------CCEEEEEeCCCeE
Q 047325           46 HIYSLAAS-----KDLLYTGSD----SKNIRVWKNLKE---FC--GFKASSGLVKAIVIS-------GEKIFTGHQDGKI  104 (368)
Q Consensus        46 ~i~~~~~~-----~~~l~s~~~----dg~i~iw~~~~~---~~--~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i  104 (368)
                      .++++.|+     ..+||.|+.    .+.|.|-.+...   ..  .-..|.-+++.+.|.       .+.|++++  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            46777776     228888875    345666544321   11  124688899999997       23455443  489


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~  183 (368)
                      |+|.+...+...........                       ..-..+..++++..|+. +.+++.+++-|-+..|||+
T Consensus       124 RlWri~~ee~~~~~~~~L~~-----------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi  180 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNN-----------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI  180 (364)
T ss_pred             EEEeccCcCCceehhhhhcc-----------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence            99999854322221110000                       00112677899999988 6779999999999999999


Q ss_pred             cCCe---EEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCE
Q 047325          184 SDSK---CLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSI  257 (368)
Q Consensus       184 ~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  257 (368)
                      +++.   ....+-+|...|..++|..++  .+++.+.||.+|+||+|....   ...+..-.....+...++|++ |.++
T Consensus       181 e~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpny  257 (364)
T KOG0290|consen  181 ETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNY  257 (364)
T ss_pred             eeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchH
Confidence            9863   356677899999999999976  999999999999999997532   122233233356788999988 4567


Q ss_pred             EEEecCC-CcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCce----eeeEeeecccc
Q 047325          258 VYCGSSD-GLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIH----TCLSVLTGHTG  329 (368)
Q Consensus       258 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~  329 (368)
                      +|+-..| ..|.+.|++....+...+.+|...|..+++   ....|+++++|..+.+||+.....    .++..+. -.+
T Consensus       258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~  336 (364)
T KOG0290|consen  258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG  336 (364)
T ss_pred             HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc
Confidence            7765444 579999999988888899999999966665   478999999999999999975422    2222333 456


Q ss_pred             CeeEEEEecCC
Q 047325          330 PVKCLAVEEDR  340 (368)
Q Consensus       330 ~v~~l~~~~~~  340 (368)
                      .|+.+.|++..
T Consensus       337 EVNqi~Ws~~~  347 (364)
T KOG0290|consen  337 EVNQIQWSSSQ  347 (364)
T ss_pred             eeeeeeecccC
Confidence            79999999653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=3.4e-20  Score=145.92  Aligned_cols=235  Identities=17%  Similarity=0.254  Sum_probs=171.1

Q ss_pred             ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      ....+.+|+++|..++|+   .+.|++|+.|.+|.||++..+.......                         .+...+
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------epvv~L  127 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------EPVVEL  127 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------------------cceEEE
Confidence            344678999999999998   6789999999999999998765433222                         245667


Q ss_pred             eecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          151 IRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .||...|--++|+|. .+.|++++.|.+|.+||+.+++.+.++. |...|.++.|+.+| +|++++.|..|+|||.+.+.
T Consensus       128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence            889999999999994 5688999999999999999999999988 99999999999999 99999999999999999773


Q ss_pred             CCcccccceeeccccc-cEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccccceee--eccceEEE-EEEeCCCEEE-
Q 047325          229 KGTKHSLAQTLLKQEC-AVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLSHGGVL--KGHKLAVL-CLAAAGKLVF-  300 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~-  300 (368)
                            .+.....|.+ .-....|..++.++-+|.   ++..+-+||...-..+....  ....+-.+ -+.+|..+++ 
T Consensus       207 ------~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl  280 (472)
T KOG0303|consen  207 ------VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYL  280 (472)
T ss_pred             ------EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEE
Confidence                  3444445543 345566777888555554   46789999987655443222  22222222 2345666555 


Q ss_pred             EeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCe
Q 047325          301 SGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      +|-.|+.||.|.+....  ...+.++. ...+=..+.|-|..-
T Consensus       281 ~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  281 CGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKRG  322 (472)
T ss_pred             EecCCcceEEEEecCCCceeEEecccc-cCCcccccccccccc
Confidence            55679999999987653  12223332 234455666666543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.87  E-value=9e-20  Score=162.50  Aligned_cols=253  Identities=18%  Similarity=0.285  Sum_probs=169.3

Q ss_pred             CCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEe--CCEEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~--~~~l~s   97 (368)
                      +.+.++.++..|+..|..++.+.   .+++|||.||+|++||..+.         ..++......+.++...  ++.+|.
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            56889999999999999988863   49999999999999997532         22344345666666654  889999


Q ss_pred             EeCCCeEEEEeecCCCccc-cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE-EEcC-CC-CEEEEEe
Q 047325           98 GHQDGKIRVWKISPKNQSV-HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM-SLDQ-DC-GLLYTAS  173 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~-~~l~~~~  173 (368)
                      ++.||.|++.+++..+... .......+.                        .. ..+.+.++ ++.. .+ ..++.+.
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n------------------------~~-~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPN------------------------LK-KDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeeccc------------------------cc-CCCceEEeecccccccceeEEEEE
Confidence            9999999999998632110 000000000                        00 11223222 3322 23 3677888


Q ss_pred             CCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325          174 WDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  250 (368)
                      ..+.|..||++.......++.  ..+.|++++.+|.+ .++.|+..|.+.+||+|-.-.     ......++..+++.+.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVW 1245 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEE
Confidence            889999999988766555543  45789999999999 999999999999999986522     2333345557777777


Q ss_pred             EcCC---CCEEEE-ec-CCCcEEEEeCCCccccceeeeccce----------------E---E-EEEEeCCCEEEEeeCC
Q 047325          251 VSSS---RSIVYC-GS-SDGLVNFWEREKQLSHGGVLKGHKL----------------A---V-LCLAAAGKLVFSGSAD  305 (368)
Q Consensus       251 ~~~~---~~~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~~~~----------------~---~-~~~~~~~~~l~~~~~d  305 (368)
                      .+|-   ....++ +. ..+.|.+|++.++............                .   + .++.--+..+.+|+.|
T Consensus      1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred             eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence            7662   234444 44 5788999999877544322222011                1   1 2222236789999999


Q ss_pred             CeEEEEecC
Q 047325          306 KTICVWRRD  314 (368)
Q Consensus       306 g~i~iw~~~  314 (368)
                      ..|+.||..
T Consensus      1326 ~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1326 MKIRKWDPT 1334 (1431)
T ss_pred             cceeeccCC
Confidence            999999964

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1e-20  Score=151.39  Aligned_cols=202  Identities=15%  Similarity=0.139  Sum_probs=156.9

Q ss_pred             eeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEE
Q 047325          150 WIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKV  221 (368)
Q Consensus       150 ~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i  221 (368)
                      ..-+..+|++++|+|..  +++++|...|+|-+||+.+.    ..+..+..|..+|.++.|+|.+  .+++.+.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            34488999999999954  58899999999999999532    2356677899999999999988  9999999999999


Q ss_pred             EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe---CCCE
Q 047325          222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKL  298 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~  298 (368)
                      -|++....    ..+.........+..+.|+.+...++.+..=|...+||+++.......+.-|...|..++.   ...+
T Consensus       262 ~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  262 QDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeecchhh----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            99986521    1222333355667888898888888888888899999999876655666667777766654   4679


Q ss_pred             EEEeeCCCeEEEEecCCCceee--eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          299 VFSGSADKTICVWRRDGAIHTC--LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       299 l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |++++.|++.+|||++....+.  +.....|...|.+..|||++.            .|+|-+.|..||||
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g------------tl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG------------TLLTTCQDNEIRVF  396 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC------------ceEeeccCCceEEe
Confidence            9999999999999997532222  344457999999999999998            46666666666665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=156.70  Aligned_cols=245  Identities=13%  Similarity=0.198  Sum_probs=187.8

Q ss_pred             cccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325           25 SQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQ  100 (368)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  100 (368)
                      +...-+...+.++.++++|++.|+|++++  |+++|+|+.|..|.+|+..-+-..--.|...|.|+.|+  ...|++++.
T Consensus        34 rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL  113 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL  113 (1081)
T ss_pred             EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch
Confidence            34456678899999999999999999997  55999999999999999764433334699999999999  778888876


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      . ..-+|..+........                                  ....|.+.+|..||++++.|-.+|+|.+
T Consensus       114 s-dFglWS~~qK~V~K~k----------------------------------ss~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen  114 S-DFGLWSPEQKSVSKHK----------------------------------SSSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             h-hccccChhhhhHHhhh----------------------------------hheeEEEeeecCCCcEEEEeccCceEEe
Confidence            4 5678887655422111                                  3457889999999999999999999999


Q ss_pred             EEccCCeEEEEee---cCCCceEEEEeCCCC------eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325          181 WRISDSKCLESVS---AHDDAVNSVVSSSEG------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV  251 (368)
Q Consensus       181 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  251 (368)
                      -+- ++++...+.   +.+.+|.+++|+|..      .+++.....++.++.+...       .+..-....-...|+.+
T Consensus       159 RNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-------~Igk~r~L~FdP~CisY  230 (1081)
T KOG1538|consen  159 RNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-------QIGKDRALNFDPCCISY  230 (1081)
T ss_pred             ecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------eecccccCCCCchhhee
Confidence            874 454444444   467899999999863      7888888999999988643       12212222334678999


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccccceee--eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .++|.+++.|+.|+.+++|..+. ..+ ...  ..|-.....+.|++++++.|+.||+|..|++-
T Consensus       231 f~NGEy~LiGGsdk~L~~fTR~G-vrL-GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFTRDG-VRL-GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEeecC-eEE-eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999999999999999997553 332 222  23445557778999999999999999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.4e-19  Score=136.93  Aligned_cols=244  Identities=18%  Similarity=0.247  Sum_probs=181.0

Q ss_pred             eeccCcCCcEEEEEecCC---EEEEccCC-------CcEEEEcCCcceec-----------cc-CCCCCeeEEEEe--CC
Q 047325           38 GSLVREEGHIYSLAASKD---LLYTGSDS-------KNIRVWKNLKEFCG-----------FK-ASSGLVKAIVIS--GE   93 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~---~l~s~~~d-------g~i~iw~~~~~~~~-----------~~-~~~~~v~~~~~~--~~   93 (368)
                      +.|..|.+.|+.++-+|.   +|+|+..+       -.+.||.+.+.+..           +. .+-+.|.|+.|.  +.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            467788899999987644   77776542       24778987654332           22 455689999998  55


Q ss_pred             EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEE
Q 047325           94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYT  171 (368)
Q Consensus        94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~  171 (368)
                      .+++-. |..|.+|+++.............                          -.++....++-+|+|  +++.+++
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEEE
Confidence            666655 88999999988765321111000                          011556678889998  7778877


Q ss_pred             EeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          172 ASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      .+ |+++..||+++.+....++ +|...|..+.|+|+.  +|++++.||.|++||.|...     .++..+.+|...+.+
T Consensus       190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWA  263 (370)
T ss_pred             eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEE
Confidence            65 7999999999887766664 688899999999998  89999999999999999654     378889999999999


Q ss_pred             EEEcCC-CCEEEEecCCCcEEEEeCCCc------------------------ccc----ceeeeccceEEEEEEeC---C
Q 047325          249 LVVSSS-RSIVYCGSSDGLVNFWEREKQ------------------------LSH----GGVLKGHKLAVLCLAAA---G  296 (368)
Q Consensus       249 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~------------------------~~~----~~~~~~~~~~~~~~~~~---~  296 (368)
                      +.|+|. .+++++|+.|..|.+|-...-                        +.+    ...+..|...|+++.+.   .
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            999995 457889999999999864210                        001    12456788889888874   5


Q ss_pred             CEEEEeeCCCeEEEEecC
Q 047325          297 KLVFSGSADKTICVWRRD  314 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~  314 (368)
                      =.+++-+.||++.|=.+.
T Consensus       344 WiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  344 WIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eeEEEeccCceEEeecCC
Confidence            578888999999887554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=2e-19  Score=158.12  Aligned_cols=268  Identities=20%  Similarity=0.298  Sum_probs=176.7

Q ss_pred             CCEEEEccCCCcEEEEcCCcc--eecccC---CCCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCC-ccccccCCcc
Q 047325           54 KDLLYTGSDSKNIRVWKNLKE--FCGFKA---SSGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKN-QSVHKRAGTL  123 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~--~~~~~~---~~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~  123 (368)
                      .+.++++...-.|++||.++.  +..|..   ....|+.+.+-    ...+++|+.||.|+||+--... ........  
T Consensus      1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa-- 1153 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA-- 1153 (1387)
T ss_pred             CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe--
Confidence            347888887789999998744  333432   34568888875    4579999999999999754332 10000000  


Q ss_pred             ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-CCceEEE
Q 047325          124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-DDAVNSV  202 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~  202 (368)
                                         ...-.....+-.+.-.-+.|.....+|+++|.-..|+|||....+....+... +..++++
T Consensus      1154 -------------------w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1154 -------------------WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred             -------------------eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence                               00000001111122244678776667777777789999999988888777643 3456666


Q ss_pred             EeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc--EEEEEEcCCCC-EEEEecCCCcEEEEeCCCc-c
Q 047325          203 VSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA--VTALVVSSSRS-IVYCGSSDGLVNFWEREKQ-L  276 (368)
Q Consensus       203 ~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~  276 (368)
                      .-.- .| .+++|..||.|++||.|....   ...+.....|...  |..+.+.++|- .|++|+.||.|++||++.. .
T Consensus      1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             cccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            4432 33 999999999999999997633   2345556667766  99999988665 4999999999999999974 2


Q ss_pred             ccceeeecc-----ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee----ccccCeeEEEEecCCeeeecC
Q 047325          277 SHGGVLKGH-----KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT----GHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       277 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      ........|     ....+.++.+...+|+|+. +.|+||++.......++...    ...+.+.+++|+|-...+|.+
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            211122222     2344566678899999998 99999998765333332222    123568999999999854444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=4.5e-21  Score=164.33  Aligned_cols=279  Identities=22%  Similarity=0.304  Sum_probs=204.9

Q ss_pred             CceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      -+.++.+.+|..+|+|..|+  +.++++|+.|..++||..++.  +....+|.+.|+.++.+  +..+++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            35567789999999999997  559999999999999997754  55788999999999998  5578999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      .+..+..+.                                ++.||++.|++++|+|-.    +.+.||++++||.+ ..
T Consensus       260 rl~~~~pvs--------------------------------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~  302 (1113)
T KOG0644|consen  260 RLPDGAPVS--------------------------------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LE  302 (1113)
T ss_pred             ecCCCchHH--------------------------------HHhccccceeeeccCccc----cCCCCCceEecccc-cc
Confidence            999886433                                445699999999999954    67889999999987 22


Q ss_pred             EEEEe----ec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEE
Q 047325          188 CLESV----SA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYC  260 (368)
Q Consensus       188 ~~~~~----~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~  260 (368)
                      ++...    +. ....+.++.+...+ .+++++.|+.-..|......            .+...+.-+..+.+ ..+.++
T Consensus       303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh------------hhccceEEEecccccccccee
Confidence            22111    11 12345666676666 89999999999888775321            11111111112212 246666


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccc--eEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHK--LAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      +-.+-.+.+|++-++... ....+|.  ..++.++| +.....+++.||...|||+-.+....... .+| ..+.+-+|+
T Consensus       371 ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFS  447 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFS  447 (1113)
T ss_pred             eeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccC
Confidence            777788899999887554 3444454  45566666 66777899999999999997764443333 444 456677999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCccccc
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v  364 (368)
                      +||..++..+.-++++.+-+|..+-..
T Consensus       448 qdgts~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  448 QDGTSIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             CCCceEecCCCCCceEEeccCCCcccc
Confidence            999999999999999888888765544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.8e-20  Score=150.65  Aligned_cols=220  Identities=15%  Similarity=0.245  Sum_probs=155.0

Q ss_pred             cCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--e-ecccCCCCCeeEEEEe----CCEEEEEeCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--F-CGFKASSGLVKAIVIS----GEKIFTGHQD  101 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~-~~~~~~~~~v~~~~~~----~~~l~s~~~d  101 (368)
                      +..-.+-+.|.||++.|+||+|+  |++|++||.|-.+.|||....  + ..-.+|.+.|.++.|-    ++.+++|..|
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            34445567799999999999997  669999999999999998632  2 2346899999999996    6689999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKV  180 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i  180 (368)
                      ..|+++|+...+....-..                      .......+..|...|..++..|++ +.+.+++.||+|+-
T Consensus       117 k~i~lfdl~~~~~~~~d~~----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHG----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             ceEEEEecccccccccccC----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence            9999999986432111100                      011233455599999999999988 78999999999999


Q ss_pred             EEccCCeEE----------EEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC-----Cc-ccc------cc
Q 047325          181 WRISDSKCL----------ESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK-----GT-KHS------LA  236 (368)
Q Consensus       181 wd~~~~~~~----------~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-----~~-~~~------~~  236 (368)
                      +|++....-          ..+...--...|+..+|..  +|++|+.|-..++||.|..-+     +. ...      ++
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv  254 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCV  254 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchh
Confidence            999863211          1111122356788999987  999999999999999543211     00 000      11


Q ss_pred             eeec-cc-----------cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          237 QTLL-KQ-----------ECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       237 ~~~~-~~-----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      ..+. +|           ...++-+.|+|+|.-|+..-....|+++|+
T Consensus       255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence            1111 11           122566789999987777666667888875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.5e-20  Score=153.06  Aligned_cols=269  Identities=17%  Similarity=0.238  Sum_probs=183.8

Q ss_pred             EEEEccCCCcEEEE--cCCc----------------------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           56 LLYTGSDSKNIRVW--KNLK----------------------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        56 ~l~s~~~dg~i~iw--~~~~----------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      +.++...|...++|  ++..                      ...++..|...|.++.|.  ...|++++.||+|++|++
T Consensus       244 ~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnL  323 (577)
T KOG0642|consen  244 ISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNL  323 (577)
T ss_pred             ccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhh
Confidence            66777777777777  3210                      011345677788888887  668999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS---  186 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  186 (368)
                      +........                        ...+...|.+|.++|.|+++.+++..+++|+.||+|+.|++...   
T Consensus       324 qk~~~s~~~------------------------~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp  379 (577)
T KOG0642|consen  324 QKAKKSAEK------------------------DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP  379 (577)
T ss_pred             cccCCcccc------------------------ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence            431111000                        11234567789999999999999999999999999999966421   


Q ss_pred             -------eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CE
Q 047325          187 -------KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SI  257 (368)
Q Consensus       187 -------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  257 (368)
                             .....+.+|...++.+++++.. .|++++.||+++.|+......     +........+...++.+-... .+
T Consensus       380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~  454 (577)
T KOG0642|consen  380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEHGYPLSVDRTSSRPAH  454 (577)
T ss_pred             ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----cccCCccccCCcceEeeccchhHh
Confidence                   2345678999999999999887 999999999999999875422     112222222334455553322 22


Q ss_pred             EEEecCCCcEEEEeCCCccccceee--------eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGVL--------KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG  329 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~  329 (368)
                      .++...-+.-.+++++.........        .......+...|...+.+++..|+.|+++|..++  ..+.....|..
T Consensus       455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--~~l~s~~a~~~  532 (577)
T KOG0642|consen  455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--KILHSMVAHKD  532 (577)
T ss_pred             hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc--ccchheeeccc
Confidence            2222222333333333222111000        0011222344567889999999999999987776  78888889999


Q ss_pred             CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          330 PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       330 ~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .++++++.|+|.            +|.+|+.|+.|++|
T Consensus       533 svtslai~~ng~------------~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  533 SVTSLAIDPNGP------------YLMSGSHDGSVRLW  558 (577)
T ss_pred             eecceeecCCCc------------eEEeecCCceeehh
Confidence            999999999999            78888888888877

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.6e-17  Score=145.32  Aligned_cols=260  Identities=30%  Similarity=0.511  Sum_probs=194.2

Q ss_pred             eccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc---eecccCCC-CCeeEEEE-e--CC-EEEEEeC-CCeEEEE
Q 047325           39 SLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE---FCGFKASS-GLVKAIVI-S--GE-KIFTGHQ-DGKIRVW  107 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~---~~~~~~~~-~~v~~~~~-~--~~-~l~s~~~-dg~i~vw  107 (368)
                      .+..|...|.++.+...  .++.++.|+.+.+|+....   ...+..+. ..+..+.+ .  +. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            56789999999999744  8888889999999997754   44455533 36666666 3  44 4555444 9999999


Q ss_pred             eecC-CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC
Q 047325          108 KISP-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD  185 (368)
Q Consensus       108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~  185 (368)
                      +... ..                                ....+..|...|..++|+|++..+++++. |+.+++|++..
T Consensus       140 ~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         140 DLSTPGK--------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             EecCCCe--------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            9987 22                                12233448999999999999998888885 99999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCCcccccce-eeccccccEEEEEEcCCCCEEEEec
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      +..+..+..|...+.+++++|++ .++++ +.|+.|++||.+..      .... .+..|.... ...|+|++..+++++
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  260 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDGSLLASGS  260 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCCCEEEEec
Confidence            88999999999999999999988 35554 89999999987733      1233 456666654 338999998999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      .|+.+++|+.+...........|...+.+  +.|++..+++++.|+.+++|+..............|...+..+.|.
T Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence            99999999998655422223566666654  4456788888999999999987765322222223788889999994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.2e-18  Score=149.64  Aligned_cols=267  Identities=13%  Similarity=0.106  Sum_probs=189.0

Q ss_pred             CCcEEEEcCCccee--cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           63 SKNIRVWKNLKEFC--GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        63 dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      ++.+.+|++..+..  ..-.-...|.++.|+   ++.++.|+.+|.|.+||+..+..........               
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~---------------  285 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA---------------  285 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------------
Confidence            34799999875522  122346678999987   7899999999999999999876532111110               


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeE------EEEee------cCCCceEEEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKC------LESVS------AHDDAVNSVV  203 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~------~~~~~------~~~~~v~~~~  203 (368)
                                 ....|..+++.+.|..+.  .-|++++.||.|..|+++.-..      .....      .....++++.
T Consensus       286 -----------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~  354 (555)
T KOG1587|consen  286 -----------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK  354 (555)
T ss_pred             -----------ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence                       111289999999997644  4499999999999998764322      11111      1234678899


Q ss_pred             eCCCC--eEEEEcCCCeEEEEEcCCCCCC--cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325          204 SSSEG--LIFTGSADGTVKVWKREQHGKG--TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       204 ~~~~~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      |.+..  .+++|+.+|.|.--+.......  ...+.......|.++|.++.++|-+..++..+.|.+++||.......+.
T Consensus       355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl  434 (555)
T KOG1587|consen  355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL  434 (555)
T ss_pred             eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence            98877  8999999999987444322111  1112344566788999999999976655555559999999987445555


Q ss_pred             eeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          280 GVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       280 ~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      ..+..+...+++++|.   ...++++..||.|.+||+......++.+...+....+.+.|+++|+.++.++..+.++.+
T Consensus       435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence            5666666667555553   568899999999999999877667777777777788889999999987777766644433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=5.4e-20  Score=153.45  Aligned_cols=203  Identities=15%  Similarity=0.206  Sum_probs=154.7

Q ss_pred             eEEEEeCCEEEE--EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           86 KAIVISGEKIFT--GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        86 ~~~~~~~~~l~s--~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      ..++-+..+++.  ++..|.|.||+++.............                            -....|+.+.|+
T Consensus       585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~Wd  636 (1012)
T KOG1445|consen  585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWD  636 (1012)
T ss_pred             CceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccC
Confidence            333444444443  45578999999987654332222111                            045679999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEccCC-------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          164 Q-DCGLLYTASWDRTFKVWRISDS-------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       164 ~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      | |...|++++.||.|++|.+..+       .+...+..|...|+++.|+|-.  .|++++.|-+|++||++..      
T Consensus       637 PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~------  710 (1012)
T KOG1445|consen  637 PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA------  710 (1012)
T ss_pred             CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh------
Confidence            9 7789999999999999998653       4567788999999999999976  8999999999999999876      


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCC----C
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSAD----K  306 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d----g  306 (368)
                      .....+.+|.+.|..++|+|+|+.+++.+.||+|++|..++.+.....-.   +.....+.+..+|+++++.+.|    .
T Consensus       711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR  790 (1012)
T KOG1445|consen  711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER  790 (1012)
T ss_pred             hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence            34667889999999999999999999999999999999988766644433   2344556788899998887765    4


Q ss_pred             eEEEEecCCCceeeeE
Q 047325          307 TICVWRRDGAIHTCLS  322 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~  322 (368)
                      .|.+||..+-...++.
T Consensus       791 Qv~~Y~Aq~l~~~pl~  806 (1012)
T KOG1445|consen  791 QVQMYDAQTLDLRPLY  806 (1012)
T ss_pred             hhhhhhhhhccCCcce
Confidence            5888876554333333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=7.6e-18  Score=141.38  Aligned_cols=257  Identities=12%  Similarity=0.202  Sum_probs=159.3

Q ss_pred             EEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCcccccee
Q 047325           57 LYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        57 l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  128 (368)
                      +++...|+.|++|++..     .+..+. +.+....+.++  +++|++++ .++.|.+|+++...........       
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence            44557789999999852     122222 33456667776  77777664 5888999999732111000000       


Q ss_pred             eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-C---eEEEEeecCCCceEEEE
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-S---KCLESVSAHDDAVNSVV  203 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~---~~~~~~~~~~~~v~~~~  203 (368)
                                             ........++++|+++++++++. ++.|.+||+.+ +   +.+..+. +.....+++
T Consensus        77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~  132 (330)
T PRK11028         77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN  132 (330)
T ss_pred             -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence                                   02234567999999998888764 78999999964 2   2233332 223456788


Q ss_pred             eCCCC-eE-EEEcCCCeEEEEEcCCCCCCccc-ccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCc--cc
Q 047325          204 SSSEG-LI-FTGSADGTVKVWKREQHGKGTKH-SLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQ--LS  277 (368)
Q Consensus       204 ~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~  277 (368)
                      ++|++ ++ ++...++.|.+||++..+..... ...... ........+.|+|++++++++.. ++.|.+|+++..  ..
T Consensus       133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            99998 55 55556799999999763221100 000111 12234678999999999988876 899999998732  11


Q ss_pred             -cceeeecc------c--eEEEEEEeCCCEEEEeeC-CCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          278 -HGGVLKGH------K--LAVLCLAAAGKLVFSGSA-DKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       278 -~~~~~~~~------~--~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                       ........      .  ..-+.++|++++++++.. ++.|.+|+++...  .+.+..... ......+.++|+|+++.+
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEE
Confidence             11111111      1  112567899999998854 7899999986532  222332222 235668999999997665


Q ss_pred             CC
Q 047325          346 TS  347 (368)
Q Consensus       346 ~~  347 (368)
                      ++
T Consensus       291 a~  292 (330)
T PRK11028        291 AG  292 (330)
T ss_pred             EE
Confidence            43

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=134.02  Aligned_cols=248  Identities=19%  Similarity=0.255  Sum_probs=167.5

Q ss_pred             eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      ..+.|+  |..|++-+.|..+++|++................                  . ....-......|..-+|-
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~------------------~-~~~~r~~eg~tvydy~wY  113 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS------------------K-HLSYRYQEGETVYDYCWY  113 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc------------------c-ceeEEeccCCEEEEEEee
Confidence            345666  8899999999999999986543211110000000                  0 000001133455666664


Q ss_pred             -------CCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CC---CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC-
Q 047325          164 -------QDCGLLYTASWDRTFKVWRISDSKCLESVSA--HD---DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK-  229 (368)
Q Consensus       164 -------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-  229 (368)
                             |+..++++.+.+.-|++||.-+|+....+.+  |.   ....+++|+||| +|+ ++..+.|++||+...++ 
T Consensus       114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRD  192 (406)
T ss_pred             eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCC
Confidence                   5778999999999999999999998877764  22   245689999999 555 45678999999943332 


Q ss_pred             Ccccccce-eeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeC-
Q 047325          230 GTKHSLAQ-TLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSA-  304 (368)
Q Consensus       230 ~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-  304 (368)
                      ........ ...+..+.+.+++|+|. ...++.|+....+-||.-..+..+ ..+.+|...|+.  +.++|+.|++|.. 
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-QLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-eeecccCCCeeeEEeccCcCeecccccC
Confidence            11111111 13345678999999995 458999999988888876665444 677789888854  5568999999985 


Q ss_pred             CCeEEEEecCCCceeeeEeeecccc-CeeEEEE--ecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTG-PVKCLAV--EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |-.|..||++.. ..++..+..|.+ .-..|-|  .|+++            .|++|+.||.|++|
T Consensus       272 ~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~------------~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  272 DDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGE------------ILASGDTDGSVRVW  324 (406)
T ss_pred             CCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCc------------eeeccCCCccEEEE
Confidence            778999999865 356777777766 3344544  58888            46666666666665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=2.6e-18  Score=130.17  Aligned_cols=228  Identities=12%  Similarity=0.116  Sum_probs=165.9

Q ss_pred             cCcCCcEEEEEecCC-------EEEEccCCCcEEEEcCCcce-----------ecccCCCCCeeEEEEe---CCEEEEEe
Q 047325           41 VREEGHIYSLAASKD-------LLYTGSDSKNIRVWKNLKEF-----------CGFKASSGLVKAIVIS---GEKIFTGH   99 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~-------~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~~~v~~~~~~---~~~l~s~~   99 (368)
                      ..|.-+++.+.|.|+       +|||.+.  .+|+|.+..+.           ..-..+.++++++.|+   .+++.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            467777888888543       6776654  79999875211           1123567899999998   78999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTF  178 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  178 (368)
                      -|-+..|||++++..-                             .....+..|.++|..++|...+ +.|++.+.||.+
T Consensus       171 iDTTCTiWdie~~~~~-----------------------------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv  221 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG-----------------------------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV  221 (364)
T ss_pred             ccCeEEEEEEeecccc-----------------------------ceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence            9999999999987210                             0112344599999999999854 588999999999


Q ss_pred             EEEEccCCeEEEEeec---CCCceEEEEeCCCC--eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325          179 KVWRISDSKCLESVSA---HDDAVNSVVSSSEG--LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS  252 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~--~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  252 (368)
                      ++||++..+.-..+..   ...+...++|++..  ++++-..| ..|.|.|+|....     ++..+.+|++.|+.++|.
T Consensus       222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-----pva~L~~H~a~VNgIaWa  296 (364)
T KOG0290|consen  222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-----PVARLRNHQASVNGIAWA  296 (364)
T ss_pred             EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-----ceehhhcCcccccceEec
Confidence            9999998664433332   24578889999887  77766654 5799999997654     677889999999999999


Q ss_pred             CC-CCEEEEecCCCcEEEEeCCCccc-----c-ceeeeccceEEEEEEe-CCCEEEEeeC
Q 047325          253 SS-RSIVYCGSSDGLVNFWEREKQLS-----H-GGVLKGHKLAVLCLAA-AGKLVFSGSA  304 (368)
Q Consensus       253 ~~-~~~l~~~~~dg~i~i~d~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~l~~~~~  304 (368)
                      |. ...|++++.|..+.+||+.....     + .....++...-+.+++ .+..++.+..
T Consensus       297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            94 56899999999999999985432     1 1111233333344443 4677777654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.8e-18  Score=145.55  Aligned_cols=281  Identities=16%  Similarity=0.243  Sum_probs=195.0

Q ss_pred             CcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325           42 REEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        42 ~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~  111 (368)
                      .|.-.++|++++  ++++|+|..||.|.+|.-..      ....+..|...|.+++|+  |.+|++|+..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            455557777776  45999999999999996332      345678899999999998  99999999999999999999


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      +++....+                                 -.++|..+.++||+.+.+....|+.|++....+.+...+
T Consensus       283 ~~kqfLPR---------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  283 GKKQFLPR---------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             CCcccccc---------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            87433332                                 567899999999999999999999999998866554444


Q ss_pred             eecC-----------CCceEEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCcccccceee-----ccccccEEEEEEcCC
Q 047325          192 VSAH-----------DDAVNSVVSSSE-GLIFTGSADGTVKVWKREQHGKGTKHSLAQTL-----LKQECAVTALVVSSS  254 (368)
Q Consensus       192 ~~~~-----------~~~v~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~  254 (368)
                      +.+.           .+-.+.++++|. +.++-.+..|.|.+||+-+.....+......-     ..+...+++++.+..
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~  409 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF  409 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence            4322           234566788883 48888899999999999765432111111110     023456788888888


Q ss_pred             CCEEEEec--------CCC--cEEEEeCCCccc----cceeeeccceEE--EEEEe--CCCEEEEeeCCCeEEEEecCCC
Q 047325          255 RSIVYCGS--------SDG--LVNFWEREKQLS----HGGVLKGHKLAV--LCLAA--AGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       255 ~~~l~~~~--------~dg--~i~i~d~~~~~~----~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |+++++.-        .||  .+++|-......    ......+|....  +++.+  .....++++.||.++||-+...
T Consensus       410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD  489 (792)
T ss_pred             ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence            99988863        233  467787653322    223344566544  33333  2348999999999999987321


Q ss_pred             --------ceeeeEeeeccccCeeEEEEecCCeeeecC-CcceEEEEE
Q 047325          317 --------IHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSCAQRWIV  355 (368)
Q Consensus       317 --------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l  355 (368)
                              ...+...-.-|..++++++|+.||..++.+ ++.+.+|..
T Consensus       490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDY  537 (792)
T ss_pred             cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence                    122333223378899999999999855433 333455543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.4e-19  Score=137.80  Aligned_cols=252  Identities=13%  Similarity=0.205  Sum_probs=167.4

Q ss_pred             cCCCceeeeccCcCCcEEEEEec----CCEEEEccCCCcEEEEcCCcc----eecccCCC-CCeeEEEEe--CCEEEEEe
Q 047325           31 LPQNGLIGSLVREEGHIYSLAAS----KDLLYTGSDSKNIRVWKNLKE----FCGFKASS-GLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~----~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~-~~v~~~~~~--~~~l~s~~   99 (368)
                      ...++.+..+.+|++.++.+.|.    +..+.+|+.||+||+||+...    ...+..+. .+..+++.+  ++.+++|.
T Consensus        57 ~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt  136 (376)
T KOG1188|consen   57 KGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT  136 (376)
T ss_pred             ccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc
Confidence            34477888899999999999884    459999999999999998632    23344554 566677775  55666664


Q ss_pred             C----CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeC
Q 047325          100 Q----DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASW  174 (368)
Q Consensus       100 ~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  174 (368)
                      .    |-.|.+||++..++.......                              .|.+.|+++.|+| +.++|++|+.
T Consensus       137 E~~~s~A~v~lwDvR~~qq~l~~~~e------------------------------SH~DDVT~lrFHP~~pnlLlSGSv  186 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQLLRQLNE------------------------------SHNDDVTQLRFHPSDPNLLLSGSV  186 (376)
T ss_pred             ccccCceEEEEEEeccccchhhhhhh------------------------------hccCcceeEEecCCCCCeEEeecc
Confidence            3    667999999988763222211                              2999999999999 5679999999


Q ss_pred             CCcEEEEEccCCe---EEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccccee-------eccc
Q 047325          175 DRTFKVWRISDSK---CLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQT-------LLKQ  242 (368)
Q Consensus       175 d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~  242 (368)
                      ||.|.+||+....   .+...-.+...|.++.|..++  .+.+-+...+..+|+++.+...........       ....
T Consensus       187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~  266 (376)
T KOG1188|consen  187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNC  266 (376)
T ss_pred             cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhh
Confidence            9999999997542   122222467789999999998  899999999999999987653111111100       0011


Q ss_pred             cccEEEEEEcCCCCEEEEecC-CCcEEEEeCC---Cc--cccceeeec-cceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325          243 ECAVTALVVSSSRSIVYCGSS-DGLVNFWERE---KQ--LSHGGVLKG-HKLAVLCLAA--AGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~--~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..-|.+. ...+...++.++. -+...++-+.   ++  ......+.+ |...|.++.+  .+..+++|++||.+.+|..
T Consensus       267 dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  267 DYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            1112221 1223444444443 5555555433   21  112233344 5555555544  5889999999999999975

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=3e-19  Score=149.14  Aligned_cols=226  Identities=15%  Similarity=0.227  Sum_probs=163.7

Q ss_pred             ccCCCcEEEEcCCccee------cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           60 GSDSKNIRVWKNLKEFC------GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        60 ~~~dg~i~iw~~~~~~~------~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      ++.-|.|-|+++.+.-.      .-......|+.+.|+   .+.|+.++.||.|++|.+..+.......           
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-----------  667 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-----------  667 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-----------
Confidence            45578999999875322      222345678999987   7799999999999999998775432221           


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-  208 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  208 (368)
                                    .....+..|...|+++.|+| ..+.|++++.|.+|++||+.+++....+.+|.+.|..++|+|+| 
T Consensus       668 --------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr  733 (1012)
T KOG1445|consen  668 --------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR  733 (1012)
T ss_pred             --------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence                          23345667999999999999 45689999999999999999999999999999999999999999 


Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCcc-cccee-
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQL-SHGGV-  281 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~-  281 (368)
                      .+++.+.||+|++|+.+....     +++.-.+ ....-..+.|.-+|+++++.+.|    ..|.+||.++-. ..... 
T Consensus       734 ~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~  808 (1012)
T KOG1445|consen  734 RIATVCKDGTLRVYEPRSREQ-----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ  808 (1012)
T ss_pred             ceeeeecCceEEEeCCCCCCC-----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee
Confidence            999999999999999987543     2222111 12233456787899988887655    467888866422 11011 


Q ss_pred             -ee-ccceEEEEEEeC-CCEEEEeeCCCeEEEEecCC
Q 047325          282 -LK-GHKLAVLCLAAA-GKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       282 -~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~  315 (368)
                       +. ....-+-.+.+| +-++++|-.|..|.+|.+-.
T Consensus       809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             eecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence             11 111112223344 45778898999999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.8e-16  Score=138.78  Aligned_cols=280  Identities=32%  Similarity=0.481  Sum_probs=199.2

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccC-CCcEEEEcCCc--ceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSD-SKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIR  105 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~-dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~  105 (368)
                      ......+..|...|.+++|.++  .+++++. |+.+++|+...  ....+..|...|.++++.  +. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            5677789999999999999765  6888875 99999999874  566778899999999998  44 455559999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||...+.....                               .+.+|...+ ...|++++..+++++.|+.+++||+..
T Consensus       225 ~wd~~~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         225 LWDLSTGKLLRS-------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             EEECCCCcEEee-------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence            997764432221                               122366654 338999988899999999999999987


Q ss_pred             CeE-EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccccee--eccccccEEEEEEcCCCCEEEEe
Q 047325          186 SKC-LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQT--LLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       186 ~~~-~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ... +..+..|...+.++.+.|++ .+++++.|+.+.+||.+....      ...  ...|...+..+.+.+++..++.+
T Consensus       273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce------EEEeeecccCCceEEEEECCCCCEEEEe
Confidence            664 44446788999999999966 777788888899998876532      122  23566678899884332455555


Q ss_pred             -cCCCcEEEEeCCCccccceeeeccc-eEEEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          262 -SSDGLVNFWEREKQLSHGGVLKGHK-LAVLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       262 -~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                       ..|+.+.+|+..... ......... .....+.+ ...+.. +..++.+.+|+....  ........+...+....+++
T Consensus       347 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  422 (466)
T COG2319         347 GSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG--SLLRNLDGHTSRVTSLDFSP  422 (466)
T ss_pred             ecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccC--eeeeeccCCCCcEEEEEECC
Confidence             688999999998766 222222222 23344444 333443 688999999998765  33333333327899999999


Q ss_pred             CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++..            +++++.++.+++|
T Consensus       423 ~~~~------------~~~~~~~~~~~~~  439 (466)
T COG2319         423 DGKS------------LASGSSDNTIRLW  439 (466)
T ss_pred             CCcE------------EEEecCCCcEEEE
Confidence            9984            4445556555555

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=1e-17  Score=128.59  Aligned_cols=207  Identities=16%  Similarity=0.167  Sum_probs=160.9

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC-----cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ..-..+|+|.+|+.+  .+|.+.....|.||...     +...+++.|...|+.++|.  .+.|++|+.|..-++|....
T Consensus         7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            334678999999866  89999999999999755     3456788999999999998  77999999999999999854


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC---  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---  188 (368)
                      +..-                             .+..++..++...+++.|+|.++.|++|+.-..|.+|-.+...-   
T Consensus        87 ~~~W-----------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   87 GGTW-----------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             CCee-----------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence            3311                             12234455899999999999999999999999999998865432   


Q ss_pred             -EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------------CcccccceeeccccccEEEEEEcCC
Q 047325          189 -LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------------GTKHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       189 -~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                       .+.-+.+...|.++.|+|++ +|++|+.|+..++|..--.+.            ..-...+.......+.+..+.|+|+
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence             12234467889999999999 999999999999986421110            0001122333355678999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCcc
Q 047325          255 RSIVYCGSSDGLVNFWEREKQL  276 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~  276 (368)
                      |+.|+-.+.|..+.+-|...+.
T Consensus       218 G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999977654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=2e-18  Score=141.35  Aligned_cols=253  Identities=17%  Similarity=0.216  Sum_probs=173.6

Q ss_pred             CcCCcEEEEEecCC-EEEEccCCCcEEEEc-CCcc-eecccCCCCCeeE-EEE-----e----CCEEEEEeCCCeEEEEe
Q 047325           42 REEGHIYSLAASKD-LLYTGSDSKNIRVWK-NLKE-FCGFKASSGLVKA-IVI-----S----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        42 ~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~-~~~~-~~~~~~~~~~v~~-~~~-----~----~~~l~s~~~dg~i~vw~  108 (368)
                      .|...|.|+.+.++ -++..++|..+.+|. +.+. ..........+.. +..     .    .+.++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            56667778888765 455555666666664 3321 1111111111111 111     1    35788999999999887


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      -...-+.                                 ....|.+.+.+-.|+|+|.-|++++.||.|++|. ++|..
T Consensus        92 k~~rVE~---------------------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML  137 (737)
T KOG1524|consen   92 KSARVER---------------------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML  137 (737)
T ss_pred             ccchhhh---------------------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence            5432211                                 1112999999999999999999999999999998 56766


Q ss_pred             EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          189 LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      ..++.....+|.|++|.|+.  .+++.  .+.+.|=.+..+.      .......|.+-|.++.|++..+++++|++|-.
T Consensus       138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k  209 (737)
T KOG1524|consen  138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR  209 (737)
T ss_pred             HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc------ceeEEeccCcEEEEeecCccccceeecCCcee
Confidence            66666678899999999998  44443  4566666665442      35678899999999999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccceEEEEEEeCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          267 VNFWEREKQLSHGGVLKGHKLAVLCLAAAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .++||.......  ....|..++++++++. ..++.++. +++|+             -+...+.|..++||+||..++.
T Consensus       210 fKvWD~~G~~Lf--~S~~~ey~ITSva~npd~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  210 FKIWDAQGANLF--TSAAEEYAITSVAFNPEKDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGTQATC  273 (737)
T ss_pred             EEeecccCcccc--cCChhccceeeeeeccccceeeeee-eeeee-------------cCCCccceEEEEEcCCCceeec
Confidence            999998765443  3345566665555543 44444443 23331             1234678999999999998888


Q ss_pred             CCcceEE
Q 047325          346 TSSCAQR  352 (368)
Q Consensus       346 ~~~~~~~  352 (368)
                      +.+.+.+
T Consensus       274 gt~~G~v  280 (737)
T KOG1524|consen  274 GTSTGQL  280 (737)
T ss_pred             cccCceE
Confidence            8777665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=1.2e-17  Score=143.72  Aligned_cols=247  Identities=17%  Similarity=0.145  Sum_probs=171.6

Q ss_pred             CCcEEEEEec---CCEEEEccCCCcEEEEcCCccee--------cccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325           44 EGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKEFC--------GFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        44 ~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~  108 (368)
                      ...|.|+.|+   +++++.|+.+|.|.+||+...-.        ....|..+|+++.|.    +.-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            5679999886   55999999999999999874322        234689999999997    45699999999999998


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccC--
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISD--  185 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~--  185 (368)
                      ++.-..............                    ...-..-...+++++|.+ +...+++|+.+|.|.--+-..  
T Consensus       322 ~~~l~~P~e~~~~~~~~~--------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKH--------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             ccccccchhhcccccccc--------------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            775543222221111000                    000001234678999988 556899999999887733222  


Q ss_pred             -C-----eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CE
Q 047325          186 -S-----KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SI  257 (368)
Q Consensus       186 -~-----~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  257 (368)
                       .     +....+..|.++|.++.++|-+ .++..+.|-++++|......     .++..+..+...+++++|||-. ..
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCceE
Confidence             1     1233555688999999999988 44444449999999986322     3556666677779999999965 47


Q ss_pred             EEEecCCCcEEEEeCCCccc-cceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          258 VYCGSSDGLVNFWEREKQLS-HGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ++++..||.+.+||+..... +......+  ......++++++.|++|...|++++|++..
T Consensus       457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            88888999999999874322 21222112  222344556799999999999999999854

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=9.4e-17  Score=125.73  Aligned_cols=228  Identities=12%  Similarity=0.195  Sum_probs=167.3

Q ss_pred             CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecc--cCCCCCeeEEEEeCCEEEEEeCCCe--EEEEeecCCCccccc
Q 047325           45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVISGEKIFTGHQDGK--IRVWKISPKNQSVHK  118 (368)
Q Consensus        45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~~~~l~s~~~dg~--i~vw~~~~~~~~~~~  118 (368)
                      ..+..+.|+.+  .|..|+.|| .++++.......+  ......|..+-|+...++..+.+..  +++.++..+......
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence            45667778877  788888888 4678765332222  2334456666777787777766543  888887765433222


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---C
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---H  195 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~  195 (368)
                      .                                 ...+|.++.++.+  .|+++-.+ .|+|||+++.+++.++..   +
T Consensus        85 ~---------------------------------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n  128 (391)
T KOG2110|consen   85 F---------------------------------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPN  128 (391)
T ss_pred             e---------------------------------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCC
Confidence            2                                 4578888988754  67777664 499999999999988764   3


Q ss_pred             CCceEEEEeCCCC-eEEEE--cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc-EEEEe
Q 047325          196 DDAVNSVVSSSEG-LIFTG--SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL-VNFWE  271 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d  271 (368)
                      ...+.++..++.+ +++--  ...|.|.+||..+.      +....+..|++.+.+++|+++|.+||++++.|+ ||+|.
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~  202 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS  202 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence            4456667777666 66543  34789999999765      457778899999999999999999999999996 68999


Q ss_pred             CCCccccceeeeccc-eEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          272 REKQLSHGGVLKGHK-LAV--LCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      +.+++......++-. ..+  ++|++++++|++.+..++|++|.++.
T Consensus       203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            998887755554433 222  66778999999999999999999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=3.9e-16  Score=122.32  Aligned_cols=246  Identities=15%  Similarity=0.180  Sum_probs=175.7

Q ss_pred             CcEEEEEecCCEEEEccCCC--cEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           45 GHIYSLAASKDLLYTGSDSK--NIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        45 ~~i~~~~~~~~~l~s~~~dg--~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      -.|-.+-|+..++|..+.+.  .+++.+..+.  ++.+. -..+|.++.++.++|+++-.+. |.|||+.+.+.......
T Consensus        47 ~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   47 VSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET  124 (391)
T ss_pred             eEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc
Confidence            34666778888766665544  4888887643  44433 3467999999988888888764 99999998876544433


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCc
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDA  198 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~  198 (368)
                      ..                             .+...+.++.+++.+.+++--+  ..|.|.+||+.+-+++..+..|++.
T Consensus       125 ~~-----------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen  125 TP-----------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             cC-----------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence            21                             1556677777777777877654  3689999999999999999999999


Q ss_pred             eEEEEeCCCC-eEEEEcCCCe-EEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          199 VNSVVSSSEG-LIFTGSADGT-VKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       199 v~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      +.+++|+++| +||+++..|+ ||++.+..+.+      ...+..  ....|.+++|+|++++|++.+..++|++|.++.
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999999 9999999987 68999977643      333322  245689999999999999999999999998763


Q ss_pred             cccccee--------------------------------------ee-ccceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325          275 QLSHGGV--------------------------------------LK-GHKLAVLCLAA--AGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       275 ~~~~~~~--------------------------------------~~-~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~  313 (368)
                      .......                                      +. .....+..+.+  ...++..++.||.++.|.+
T Consensus       250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l  329 (391)
T KOG2110|consen  250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL  329 (391)
T ss_pred             cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence            2110000                                      00 00112334443  4678889999999999998


Q ss_pred             CCCceeeeEeeecc
Q 047325          314 DGAIHTCLSVLTGH  327 (368)
Q Consensus       314 ~~~~~~~~~~~~~h  327 (368)
                      +...+-....++.|
T Consensus       330 ~~~~gGec~lik~h  343 (391)
T KOG2110|consen  330 PPKEGGECALIKRH  343 (391)
T ss_pred             CCCCCceeEEEEee
Confidence            76433333444434

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1e-17  Score=133.23  Aligned_cols=186  Identities=18%  Similarity=0.236  Sum_probs=138.8

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      .+++|+.+|..+++++.||++++|+..+...+.....|...|.++.|+||+ .|++-+.| ..++|+.+++.......  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t--  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT--  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence            789999999999999999999999988888888888999999999999999 88888989 99999999873211111  


Q ss_pred             eeeccccccEEEEEEcCCC-----CEEEEecCCCcEEEEeCCCccc-----cceeeecc-ceEEEEEEeCCCEEEEeeCC
Q 047325          237 QTLLKQECAVTALVVSSSR-----SIVYCGSSDGLVNFWEREKQLS-----HGGVLKGH-KLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~~~~~d  305 (368)
                        -.........+.|+.++     ..++....-+.|+.||+.....     .......+ ....++++.+|++++.|+.|
T Consensus       225 --~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  225 --PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             --CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence              12334456677788766     2333344456677766543221     11222233 55667888899999999999


Q ss_pred             CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      |.|.|++....+ .....-+.|..-|+.+.|+||.+.+++.+.+
T Consensus       303 GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  303 GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             CcEEEEEeceee-eeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence            999999876652 2233346799999999999999987765544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=6.1e-18  Score=146.20  Aligned_cols=233  Identities=15%  Similarity=0.087  Sum_probs=160.8

Q ss_pred             CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325           63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP  136 (368)
Q Consensus        63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (368)
                      +..|.+||.... ...+..|...+.+..|+  |+.|+.++.+   ..|.+||+.+++......                 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------  245 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------  245 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence            468999997643 44566778889999998  7788877654   369999998765321111                 


Q ss_pred             CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEE--EccCCeEEEEeecCCCceEEEEeCCCC-eEE-
Q 047325          137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEG-LIF-  211 (368)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-  211 (368)
                                      ........+|+||++.|+.++ .+|.+.||  |+.+++. ..+..+...+....|+|+| .|+ 
T Consensus       246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f  308 (429)
T PRK01742        246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILF  308 (429)
T ss_pred             ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEE
Confidence                            112233689999999888764 67766555  6655553 4455566778889999999 444 


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC  291 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  291 (368)
                      ++..++...+|+++.....     ...+ .+..  ....|+|+++.|+..+.++ +.+||+.++.... ...........
T Consensus       309 ~s~~~g~~~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~~~~~~~~  378 (429)
T PRK01742        309 TSDRSGSPQVYRMSASGGG-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSSTFLDESPS  378 (429)
T ss_pred             EECCCCCceEEEEECCCCC-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCCCCCCCce
Confidence            4456788888887643221     1111 2222  4578999999998887765 6669988764331 11222233457


Q ss_pred             EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ++|++++|+.++.+|.+.+|++....+.....+..|.+.+...+|+|-
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            899999999999999999888754445677788888888999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2e-17  Score=145.77  Aligned_cols=250  Identities=18%  Similarity=0.284  Sum_probs=167.8

Q ss_pred             cCCCceeeeccCcC---CcEEEEEecC----CEEEEccCCCcEEEEcCCcc-------eec---ccC----CCCCeeEEE
Q 047325           31 LPQNGLIGSLVREE---GHIYSLAASK----DLLYTGSDSKNIRVWKNLKE-------FCG---FKA----SSGLVKAIV   89 (368)
Q Consensus        31 ~~~~~~~~~~~~h~---~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~-------~~~---~~~----~~~~v~~~~   89 (368)
                      +..+..+..|..+.   ..|+.+.+-.    .++++|+.||.||||+....       +..   +.+    ..+.=.-+.
T Consensus      1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred             cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence            33444444444332   3488887732    28999999999999974211       111   111    111112334


Q ss_pred             Ee--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CC
Q 047325           90 IS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DC  166 (368)
Q Consensus        90 ~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  166 (368)
                      |.  ..+|++++.-..|+|||............+                               ....|+++.-+. .|
T Consensus      1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-------------------------------s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-------------------------------SSTLVTALSADLVHG 1221 (1387)
T ss_pred             hhhhCCeEEecCCeeEEEEEecccceeEeecccC-------------------------------CCccceeecccccCC
Confidence            44  556777777889999999887654443332                               344566665543 46


Q ss_pred             CEEEEEeCCCcEEEEEccCCe---EEEEeecCCCc--eEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325          167 GLLYTASWDRTFKVWRISDSK---CLESVSAHDDA--VNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTL  239 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  239 (368)
                      +.+++|..||.|++||.+...   .+...+.|...  |..+.+.+.|  .|++|+.||.|++||+|......   .....
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIV 1298 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cceee
Confidence            899999999999999987543   46677788776  9999999888  79999999999999999852211   11111


Q ss_pred             ccc--cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-----eecc--ceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          240 LKQ--ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-----LKGH--KLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       240 ~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      ..-  .+..+++..+++...+|+|+. +.|+||++...+.....     ....  ....+.|+|..-++++|+.|.+|.|
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence            111  235999999999999999998 99999998754322111     1111  1234666777889999999999999


Q ss_pred             EecCC
Q 047325          311 WRRDG  315 (368)
Q Consensus       311 w~~~~  315 (368)
                      |....
T Consensus      1378 Ys~~k 1382 (1387)
T KOG1517|consen 1378 YSCEK 1382 (1387)
T ss_pred             eecCC
Confidence            96544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.8e-16  Score=117.40  Aligned_cols=232  Identities=15%  Similarity=0.197  Sum_probs=158.9

Q ss_pred             CceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCccee--------c--c-----cCCCCCeeEEEEe--CCEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--------G--F-----KASSGLVKAIVIS--GEKIF   96 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--------~--~-----~~~~~~v~~~~~~--~~~l~   96 (368)
                      ...+-..++|.++|+.++|..++|++|+. |.|+=|...+...        .  .     ...-..|+++..+  .+-++
T Consensus        52 k~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             CcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            34445569999999999999889998886 9999997432211        1  1     1123457777776  55666


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR  176 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  176 (368)
                      .++.|+.+.-||+++++..                                +.+.||++-|.++.-......+++|++||
T Consensus       131 ~AgGD~~~y~~dlE~G~i~--------------------------------r~~rGHtDYvH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQ--------------------------------REYRGHTDYVHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             EecCCeEEEEEEecCCEEE--------------------------------EEEcCCcceeeeeeecccCcceeecCCCc
Confidence            6668999999999998743                                34567999999999866667899999999


Q ss_pred             cEEEEEccCCeEEEEeecC----------CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          177 TFKVWRISDSKCLESVSAH----------DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      ++++||.++++.+..+...          ...|-+++.+.+ .+++|+ ...+.+|.++....       .....-..++
T Consensus       179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~-------t~vfpipa~v  249 (325)
T KOG0649|consen  179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSES-------TCVFPIPARV  249 (325)
T ss_pred             cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCc-------eEEEecccce
Confidence            9999999999988877532          123556665443 555544 56799999997632       2333445667


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEE
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVW  311 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw  311 (368)
                      ..+.|.  .+.++++++.+.|.-|.+..-... ....++. ..+..+++   -++|-.++..+.+.|+
T Consensus       250 ~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a-~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  250 HLVDFV--DDCVLIGGEGNHVQSYTLNGVLQA-NIPVEST-ACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eEeeee--cceEEEeccccceeeeeeccEEEE-eccCCcc-ceeeecccCCceEEEEecccceeeeee
Confidence            778885  456888888888999987753222 1111221 22222222   3456666667777776

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=1.2e-16  Score=122.79  Aligned_cols=251  Identities=13%  Similarity=0.128  Sum_probs=184.8

Q ss_pred             ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      +..-..+|+|.+|+  ...++.+.....|.||.....+.-..                             ..++..|..
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----------------------------~htls~Hd~   56 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----------------------------AHTLSEHDK   56 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----------------------------ceehhhhCc
Confidence            33446789999998  66889999999999999887652211                             122334999


Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .|+++.|.|..+.|++|+.|..-++|...++   ++...+..++...+++.|+|.+ ++++|+....|.+|-++..+.  
T Consensus        57 ~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--  134 (361)
T KOG1523|consen   57 IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--  134 (361)
T ss_pred             ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--
Confidence            9999999999999999999999999998433   4566677789999999999998 999999999999999875432  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-----Ccc--------c----cceee--eccceEEEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-----KQL--------S----HGGVL--KGHKLAVLCL  292 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~--------~----~~~~~--~~~~~~~~~~  292 (368)
                      -.........+...|++++|+|++-+|++|+.|+..++|..-     +..        .    +....  .+.-..-..|
T Consensus       135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence            111222334567889999999999999999999999999731     110        0    00111  1222334678


Q ss_pred             EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325          293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK  362 (368)
Q Consensus       293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~  362 (368)
                      +++|..|+-.+.|+.+.+-|...+.. .+.....-.-|..++.|-.+...++.+-+...  .+++..++|
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~~-~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P--~lf~~~~~~  281 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPSE-RVQSVATAQLPLLSVSWISENSVVAAGYDCGP--VLFVTDEEG  281 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCch-hccchhhccCCceeeEeecCCceeecCCCCCc--eEEEecccc
Confidence            88999999999999999998766532 33344334478999999988887777666444  344555554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.7e-18  Score=133.67  Aligned_cols=196  Identities=20%  Similarity=0.291  Sum_probs=149.1

Q ss_pred             eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      .+++|+  |..|++|+.||++|||++.+.........                                |...|.++.|+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~--------------------------------~~~eV~DL~FS  195 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA--------------------------------HHAEVKDLDFS  195 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh--------------------------------hcCccccceeC
Confidence            456665  78999999999999999776554333322                                88999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-----eEEEEc-CCCeEEEEEcCCCCCCccccc
Q 047325          164 QDCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-----LIFTGS-ADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-----~l~~~~-~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      ||++.|++-+.| ..++|+.+++..+.....  .+.....+.|+.++     ++++.. ..+.|+.||+...... ....
T Consensus       196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~  273 (398)
T KOG0771|consen  196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR  273 (398)
T ss_pred             CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence            999999999999 899999999977766652  22345566776655     444433 3556777777544332 1112


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..+.......|.+++.+++|++++.|+.||.|.|++..+-+......+.|...|  +.|+||.+++++-+.|...++..+
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            233333445799999999999999999999999999998888877888898888  456689999999999999998876


Q ss_pred             CC
Q 047325          314 DG  315 (368)
Q Consensus       314 ~~  315 (368)
                      .-
T Consensus       354 ~v  355 (398)
T KOG0771|consen  354 AV  355 (398)
T ss_pred             ee
Confidence            54

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.8e-18  Score=139.57  Aligned_cols=169  Identities=18%  Similarity=0.299  Sum_probs=132.6

Q ss_pred             ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325           74 EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI  151 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (368)
                      ....+.+|.+.|+++.|+  |.+|++|+.|-.+.|||....+.......                               
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------------------------------   90 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------------------------------   90 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------------------------------
Confidence            345688999999999998  89999999999999999886554443333                               


Q ss_pred             ecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC----------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCC
Q 047325          152 RHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADG  217 (368)
Q Consensus       152 ~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg  217 (368)
                      ||...|.++.|-|  +...+++|..|..|+++|+.+.          +....+..|...|..++..|++  .+.++++||
T Consensus        91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen   91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence            4999999999999  5678999999999999999752          3455566788999999999988  899999999


Q ss_pred             eEEEEEcCCCCCCc----ccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 047325          218 TVKVWKREQHGKGT----KHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       218 ~i~i~d~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  273 (368)
                      +|+-+|+|......    ....+......--...++..+|. ..+|++|+.|-..++||.+
T Consensus       171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            99999999753211    01111112222345678899994 5689999999999999965

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.4e-17  Score=129.31  Aligned_cols=248  Identities=13%  Similarity=0.084  Sum_probs=171.7

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+.+|.+.|+++.|+  +++|++|+.|..+++|+++..-.....+.-  .                 +      .-..|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~-----------------~------~~~~H~  105 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--G-----------------V------MEHPHR  105 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--e-----------------e------ccCccc
Confidence            356899999999998  789999999999999998643211110000  0                 0      001177


Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ..|.|++|...+..+++|+.+++|.+.|+++.+.+..+..  ..+.|..+..+|.. .+++.+.++.|.+||.+......
T Consensus       106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~  185 (609)
T KOG4227|consen  106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI  185 (609)
T ss_pred             cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence            8999999999999999999999999999999998887753  23589999999977 99999999999999998754211


Q ss_pred             ccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCccccceeee---ccce-----EEEEEEeCCCEEEEe
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKL-----AVLCLAAAGKLVFSG  302 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~l~~~  302 (368)
                         ..............+.|+|.. .+|++.+..+-+-+||.+.+........   +-+.     --.-|+++|..+.+-
T Consensus       186 ---~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  186 ---SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             ---ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence               122333455667888999954 5788888899999999987654432211   1111     124567788877776


Q ss_pred             eCCCeEEEEecCCCceeeeEeeeccc-------cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          303 SADKTICVWRRDGAIHTCLSVLTGHT-------GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       303 ~~dg~i~iw~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      -.-..-.+||+-... -++..+. |.       ..+.+++|..|..             ++||+.|-.|.+|
T Consensus       263 RR~~~P~~~D~~S~R-~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-------------v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQR-CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-------------VATGSDHWGIHIW  319 (609)
T ss_pred             hccCCCEEeeeeccc-ceeEecc-CCCCcceeeeeeeeeeeeccee-------------eeccCcccceEEE
Confidence            655556677776531 1222222 22       2477888887765             4555555555555

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=5.7e-19  Score=151.67  Aligned_cols=242  Identities=20%  Similarity=0.339  Sum_probs=182.4

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      +..+.+|...|+|..|+  |.++++|+.|..++||..++..+.....                                |
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------------------------------G  230 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR--------------------------------G  230 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC--------------------------------C
Confidence            44577999999999998  9999999999999999988877544433                                4


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      |...|+.++.+.++.++++++.|..|++|.+..+.++..+.+|++.|++++|+|-.   +.+.||++++||.+-..... 
T Consensus       231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y-  306 (1113)
T KOG0644|consen  231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIY-  306 (1113)
T ss_pred             CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccccc-
Confidence            99999999999999999999999999999999999999999999999999999964   77889999999998321101 


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                       .+..........+.++.|..++.-+++++.|+.-..|.+.........    -..+...+-...+.+++-.+-.+++|+
T Consensus       307 -~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~----lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  307 -VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL----LIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             -CCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc----eEEEeccccccccceeeeeeeEeeeee
Confidence             111111223356777888888899999999999888876532111000    001111111235677777888999998


Q ss_pred             cCCCceeeeEeeeccccCeeEEEEecCCeeeec---CCcceEEEEEeeCC
Q 047325          313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS---TSSCAQRWIVYSGS  359 (368)
Q Consensus       313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~---~~~~~~~w~l~sg~  359 (368)
                      +.++  .....+.+|...+..|.++|-...++-   -++...+|.++-|.
T Consensus       382 l~~g--~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  382 LYTG--QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             cccc--hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            8776  667778899999999999998765442   24556667766554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-15  Score=132.54  Aligned_cols=258  Identities=17%  Similarity=0.257  Sum_probs=169.4

Q ss_pred             ecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---C--CEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325           52 ASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---G--EKIFTGHQDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        52 ~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      |+++ ..+-+..+..|.||...++  +..+..|..+++.+.+.   .  .++++++.||.|++||...+...........
T Consensus        24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~  103 (792)
T KOG1963|consen   24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP  103 (792)
T ss_pred             cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence            4544 2233444568999988755  44678899999998887   2  4778999999999999877665433222110


Q ss_pred             ccce-----------eeeec----------cCC--------------------------CCceeE---------------
Q 047325          124 PTLK-----------DIFKS----------SIK--------------------------PSNYIE---------------  141 (368)
Q Consensus       124 ~~~~-----------~~~~~----------~~~--------------------------~~~~~~---------------  141 (368)
                      ....           ..+..          ..+                          +.....               
T Consensus       104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~  183 (792)
T KOG1963|consen  104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI  183 (792)
T ss_pred             eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence            0000           00000          000                          000000               


Q ss_pred             ----ecccce-----eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC----CeEEEEeecCCCceEEEEeCCCC
Q 047325          142 ----VRRHRT-----ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       142 ----~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~  208 (368)
                          ...+..     ..-..|...+++.+++|++++++++..||.|.+|.--.    ......+.-|...|.++.|+++|
T Consensus       184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G  263 (792)
T KOG1963|consen  184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG  263 (792)
T ss_pred             EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence                000000     00023666789999999999999999999999996432    12345667788999999999999


Q ss_pred             -eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---eee-
Q 047325          209 -LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---VLK-  283 (368)
Q Consensus       209 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~-  283 (368)
                       +|++|+..+.+.+|.+.+++       .+.+..-.++|..+.++||+.+.+....|+.|.+....+......   ... 
T Consensus       264 ~~LlSGG~E~VLv~Wq~~T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  264 AYLLSGGREGVLVLWQLETGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             ceEeecccceEEEEEeecCCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence             99999999999999998763       234455678899999999999999999999999987643221110   000 


Q ss_pred             ------ccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          284 ------GHK--LAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       284 ------~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                            ...  ....+++|..+.++-.+..|.|.+||+-+.
T Consensus       337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             CccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence                  011  223556665667777778888888887543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=3.1e-16  Score=140.42  Aligned_cols=222  Identities=13%  Similarity=0.232  Sum_probs=152.4

Q ss_pred             EcCCc-ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecc
Q 047325           69 WKNLK-EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR  144 (368)
Q Consensus        69 w~~~~-~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (368)
                      |++.. .+..+..|...+..++.+   +.++++|+.||+|++|+...-.......                         
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------- 1088 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------- 1088 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------
Confidence            44442 345677889999988887   4799999999999999987543211000                         


Q ss_pred             cceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC--e-----EEEEeecC-CCceEEE-EeCCC--C-eEEE
Q 047325          145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--K-----CLESVSAH-DDAVNSV-VSSSE--G-LIFT  212 (368)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~--~-~l~~  212 (368)
                      .....+......+.++...+.++.+|+++.||.|++.++...  +     .......+ .+.+.++ ++...  . .++.
T Consensus      1089 rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy 1168 (1431)
T KOG1240|consen 1089 RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY 1168 (1431)
T ss_pred             eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE
Confidence            011122225678999999999999999999999999998762  1     11111112 2334443 33322  2 6788


Q ss_pred             EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--E
Q 047325          213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--L  290 (368)
Q Consensus       213 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~  290 (368)
                      +...+.|..||+++...    ..........+.|++++.+|.+++++.|+..|.+.+||++-+........++..++  +
T Consensus      1169 ~T~~~~iv~~D~r~~~~----~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1169 ATDLSRIVSWDTRMRHD----AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred             EEeccceEEecchhhhh----HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence            88899999999987533    11223344567899999999999999999999999999997766655555555555  3


Q ss_pred             EEEe---CCCEEEEee--CCCeEEEEecCCCcee
Q 047325          291 CLAA---AGKLVFSGS--ADKTICVWRRDGAIHT  319 (368)
Q Consensus       291 ~~~~---~~~~l~~~~--~dg~i~iw~~~~~~~~  319 (368)
                      +++|   .....++++  ..+.|.+|++.++..+
T Consensus      1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             EeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            4444   234555444  5778999999887443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.4e-16  Score=124.31  Aligned_cols=261  Identities=12%  Similarity=0.129  Sum_probs=185.9

Q ss_pred             CcCCcEEEEEec--CC--EEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325           42 REEGHIYSLAAS--KD--LLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        42 ~h~~~i~~~~~~--~~--~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~  109 (368)
                      .....|..++|.  ++  .+...+.|..+......+.        ........++|..+...+..|++|-.+|.+.+|..
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence            345667777775  33  5555546666666655432        22344567788888888899999999999999998


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCC--CcEEEEEccCC
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWD--RTFKVWRISDS  186 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--~~i~iwd~~~~  186 (368)
                      ..+..-....                             ........+..+.-++... .+++|+..  ..+.+||+++.
T Consensus       133 k~~d~hss~l-----------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~  183 (412)
T KOG3881|consen  133 KSGDLHSSKL-----------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS  183 (412)
T ss_pred             cCCccccccc-----------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence            8654210000                             0000223444555555433 56668888  88999999988


Q ss_pred             eEEEEeecC---------CCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC
Q 047325          187 KCLESVSAH---------DDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       187 ~~~~~~~~~---------~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                      +.+..-+.-         .-.++++.|.+.  . .|++++.-+.+++||.+.+.     +++..+.-.+.+++++...|+
T Consensus       184 ~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  184 KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCC
Confidence            665544321         124567778776  4 99999999999999998543     467777778899999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCee
Q 047325          255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK  332 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~  332 (368)
                      ++++++|..-|.+..||++.+......+.+-.+.+.++..  ..++|++++-|..|||+|+.+.  .++.... -...++
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr--kll~kvY-vKs~lt  335 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR--KLLHKVY-VKSRLT  335 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc--hhhhhhh-hhcccc
Confidence            9999999999999999999998887778888888877765  5669999999999999999874  2222211 234466


Q ss_pred             EEEEecC
Q 047325          333 CLAVEED  339 (368)
Q Consensus       333 ~l~~~~~  339 (368)
                      .|.+.++
T Consensus       336 ~il~~~~  342 (412)
T KOG3881|consen  336 FILLRDD  342 (412)
T ss_pred             EEEecCC
Confidence            6666544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=9.1e-17  Score=131.82  Aligned_cols=167  Identities=20%  Similarity=0.288  Sum_probs=133.8

Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      ...|+.++.||.+.+.+ +.++....+.+|.+.+.+-.|+|+| -|+++++||.|++|.....       ....+.....
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~  146 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEE  146 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-------HHHHHhhcCc
Confidence            35788889999999988 4678888889999999999999999 9999999999999986532       3344556678


Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLS  322 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~  322 (368)
                      +|.|++|.|+.+.++-+. .+.+.|=.+.....+ ...+.|.+-+++++++  .+++++|++|-..+|||-..   ..++
T Consensus       147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~-i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---~~Lf  221 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKI-IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---ANLF  221 (737)
T ss_pred             eeEEEEECCCCCceEEec-CCeEEEeecccccce-eEEeccCcEEEEeecCccccceeecCCceeEEeecccC---cccc
Confidence            899999999877655543 355777666654444 4667899999888874  78999999999999997544   5677


Q ss_pred             eeeccccCeeEEEEecCCeeeec
Q 047325          323 VLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       323 ~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .-..|.-+|++++|+|+..++..
T Consensus       222 ~S~~~ey~ITSva~npd~~~~v~  244 (737)
T KOG1524|consen  222 TSAAEEYAITSVAFNPEKDYLLW  244 (737)
T ss_pred             cCChhccceeeeeeccccceeee
Confidence            77889999999999999655443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1.2e-14  Score=122.03  Aligned_cols=268  Identities=15%  Similarity=0.204  Sum_probs=159.0

Q ss_pred             eeeeccCcCCcEEEEEec--CCEEEEc-cCCCcEEEEcCCc-c-eeccc--CCCCCeeEEEEe--CCEEEEEeC-CCeEE
Q 047325           36 LIGSLVREEGHIYSLAAS--KDLLYTG-SDSKNIRVWKNLK-E-FCGFK--ASSGLVKAIVIS--GEKIFTGHQ-DGKIR  105 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~--~~~l~s~-~~dg~i~iw~~~~-~-~~~~~--~~~~~v~~~~~~--~~~l~s~~~-dg~i~  105 (368)
                      ++.++. +.+....++++  +++|+++ ..++.|.+|++.. . +....  ...+....+.++  ++++++++. ++.|.
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~  105 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS  105 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence            334443 23445566776  4466544 5688999998752 1 21111  122345677777  777777764 89999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRIS  184 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~  184 (368)
                      +|++++.........                            .. .+.....+++++|+++++++++ .++.|.+||+.
T Consensus       106 v~~~~~~g~~~~~~~----------------------------~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028        106 VSPLDKDGIPVAPIQ----------------------------II-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             EEEECCCCCCCCcee----------------------------ec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            999974321111000                            00 0223456788999999886655 56899999997


Q ss_pred             CCeEEEE-----ee-cCCCceEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeecc------ccccEEEEE
Q 047325          185 DSKCLES-----VS-AHDDAVNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLK------QECAVTALV  250 (368)
Q Consensus       185 ~~~~~~~-----~~-~~~~~v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~------~~~~i~~~~  250 (368)
                      +...+..     .. ........+.|+|++ +++++.. ++.|.+|+++....  .......+..      .......+.
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEE
Confidence            6332211     11 123345789999999 6666665 89999999974211  1111111111      112234688


Q ss_pred             EcCCCCEEEEecC-CCcEEEEeCCCcccc---ce-eeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCC--ceeeeE
Q 047325          251 VSSSRSIVYCGSS-DGLVNFWEREKQLSH---GG-VLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGA--IHTCLS  322 (368)
Q Consensus       251 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~--~~~~~~  322 (368)
                      ++|++++++++.. ++.|.+|++......   .. ...+....-..+++++++|+++.. +++|.+|+++..  ....+.
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~  314 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG  314 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence            9999999998864 689999998643211   11 111112234678899999998775 899999988643  233344


Q ss_pred             eeeccccCeeEEEE
Q 047325          323 VLTGHTGPVKCLAV  336 (368)
Q Consensus       323 ~~~~h~~~v~~l~~  336 (368)
                      .+.. .....+++|
T Consensus       315 ~~~~-g~~P~~~~~  327 (330)
T PRK11028        315 RYAV-GQGPMWVSV  327 (330)
T ss_pred             cccc-CCCceEEEE
Confidence            3332 334455554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.73  E-value=1.4e-17  Score=134.14  Aligned_cols=272  Identities=17%  Similarity=0.184  Sum_probs=199.8

Q ss_pred             EEEe--cCCEEEEccCCCcEEEEcCCcceecccC-CCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccc
Q 047325           49 SLAA--SKDLLYTGSDSKNIRVWKNLKEFCGFKA-SSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLP  124 (368)
Q Consensus        49 ~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  124 (368)
                      .+.+  +|..|+.|+.-|.|-.+|..+....+.. -...|.++.|- ...+++......+.|||-...+.-...      
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk------  207 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK------  207 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh------
Confidence            4555  4668889999999999997754333322 24457777776 555555556778999986644321111      


Q ss_pred             cceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEe
Q 047325          125 TLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS  204 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  204 (368)
                                                  ....|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..++-
T Consensus       208 ----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  208 ----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             ----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence                                        2356888999998888999999999999999999999999988899999999


Q ss_pred             CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325          205 SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK  283 (368)
Q Consensus       205 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  283 (368)
                      +|-+ .+-+|..+|+|.+|.....      .++..+..|.++|.++++.++|+++++.+.|..++|||++....+.....
T Consensus       260 NP~NaVih~GhsnGtVSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  260 NPYNAVIHLGHSNGTVSLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             CCccceEEEcCCCceEEecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            9988 8899999999999998765      35667788999999999999999999999999999999998776655555


Q ss_pred             ccceEEEEEEeCCCEEEEeeCCCeEEEEecC-CCceeeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325          284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRD-GAIHTCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL  360 (368)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~  360 (368)
                      .|...-++++  .+-+++.+....|.||.=. ......-..+-.|  .++|.++.|.|-..+|..+...+..-.|+-|+.
T Consensus       334 p~~a~~ls~S--qkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG  411 (545)
T KOG1272|consen  334 PHPASNLSLS--QKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG  411 (545)
T ss_pred             CCCccccccc--cccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence            4555445544  3334444555579999421 1111111122223  458999999999998888776655546666765


Q ss_pred             cc
Q 047325          361 DK  362 (368)
Q Consensus       361 D~  362 (368)
                      |-
T Consensus       412 eP  413 (545)
T KOG1272|consen  412 EP  413 (545)
T ss_pred             CC
Confidence            53

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=1.2e-15  Score=120.91  Aligned_cols=245  Identities=18%  Similarity=0.195  Sum_probs=172.2

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--------c------c----eecccCCCCCeeEEEEe--
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--------K------E----FCGFKASSGLVKAIVIS--   91 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--------~------~----~~~~~~~~~~v~~~~~~--   91 (368)
                      -+.+..|..|..+|+++.|+++  +||+|+.+|.|.+|...        +      +    ...+.+|...|..++|.  
T Consensus        55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence            4567889999999999999866  99999999999999654        1      1    23456899999999998  


Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      +.++++++.|..+++||+..++.....                                .+|..-|..++|.|-++++++
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~--------------------------------~dh~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAGQLLAIL--------------------------------DDHEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             CceeeeeeccceEEEEEeccceeEeec--------------------------------cccccccceeecchhhhhhhh
Confidence            789999999999999999988743332                                338899999999999999999


Q ss_pred             EeCCCcEEEEEccCCeEEEEee-------------------cCC----CceEEEEeCCCC-eEEEEcC----CC-----e
Q 047325          172 ASWDRTFKVWRISDSKCLESVS-------------------AHD----DAVNSVVSSSEG-LIFTGSA----DG-----T  218 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~-------------------~~~----~~v~~~~~~~~~-~l~~~~~----dg-----~  218 (368)
                      -+.|...+.+++...+.+....                   .|+    .....++|+|+| .+++.+.    .+     .
T Consensus       183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~  262 (434)
T KOG1009|consen  183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNT  262 (434)
T ss_pred             hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeece
Confidence            9999877777765543332221                   011    123456788999 6655432    22     2


Q ss_pred             EEEEEcCCCCCCcccccceeeccccccEEEEEEcC------------------CCCEEEEecCCCcEEEEeCCCccccce
Q 047325          219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS------------------SRSIVYCGSSDGLVNFWEREKQLSHGG  280 (368)
Q Consensus       219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~  280 (368)
                      .++|+-....     ++...+.....+...+.++|                  -+-.++.++. ..|++||.++...+..
T Consensus       263 tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~  336 (434)
T KOG1009|consen  263 SYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAV  336 (434)
T ss_pred             eEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEE
Confidence            3455443221     23334444444455555544                  1224555554 5699999998777666


Q ss_pred             eeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          281 VLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       281 ~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ...-|-..++.  ++.||..|+..+.||...+-.++..
T Consensus       337 v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  337 VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            66667777755  4557899999999999887766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=6.7e-16  Score=121.87  Aligned_cols=216  Identities=12%  Similarity=0.165  Sum_probs=162.4

Q ss_pred             eeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe---CCEEEEEeCC--CeEEE
Q 047325           38 GSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS---GEKIFTGHQD--GKIRV  106 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~---~~~l~s~~~d--g~i~v  106 (368)
                      .+....+++|..++.....|++|-.+|.+.+|.....      +..+..+ ..+..+.-.   ...+++|+..  ..+.+
T Consensus        99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen   99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            3445567778888887778999999999999987622      2222222 334444433   5577889998  89999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~  184 (368)
                      ||++..++......-              +...+.++         -.-.++++.|.+.  ...|++++.-+.+++||.+
T Consensus       178 wdle~~~qiw~aKNv--------------pnD~L~Lr---------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNV--------------PNDRLGLR---------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             eecccceeeeeccCC--------------CCccccce---------eeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence            999988544333221              11111111         2235678889887  7899999999999999998


Q ss_pred             CC-eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          185 DS-KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       185 ~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .+ +++..+...+.++.++...|++ .+++|..-+.+..||++....     ....+.+..+.|+++..+|.++++++++
T Consensus       235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeec
Confidence            65 5788888888999999999999 999999999999999997632     3344778889999999999999999999


Q ss_pred             CCCcEEEEeCCCccccceee
Q 047325          263 SDGLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~  282 (368)
                      -|..++|+|+++.+.+...+
T Consensus       310 LDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  310 LDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             cceeEEEeecccchhhhhhh
Confidence            99999999999865554433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=3.9e-16  Score=116.94  Aligned_cols=251  Identities=15%  Similarity=0.180  Sum_probs=157.9

Q ss_pred             CcCCcEEEEEecC-CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCC-eEEEEeecCCCcccccc
Q 047325           42 REEGHIYSLAASK-DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDG-KIRVWKISPKNQSVHKR  119 (368)
Q Consensus        42 ~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~~~~~~  119 (368)
                      .|...|+.+..-+ +.|.+-+.|+.+.+|++.... -...|.-.++++.|..--+...+... ..-.++-+.........
T Consensus        54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~-~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA-FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCCcchhhcCCCceEEEEEccCcc-eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            4566677777655 689999999999999987521 12234455556655533333333222 11122111111100000


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CC--CEEEEEeCCCcEEEEEccCCeEE-------
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DC--GLLYTASWDRTFKVWRISDSKCL-------  189 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~l~~~~~d~~i~iwd~~~~~~~-------  189 (368)
                      .+. ..             .+.+....   -.+..+.+.|..+.. .+  -++++|.++|.+.+||+.++..+       
T Consensus       133 ~g~-~t-------------qv~i~dd~---~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~  195 (323)
T KOG0322|consen  133 GGD-TT-------------QVQIADDS---ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS  195 (323)
T ss_pred             cCc-cc-------------eeEccCch---hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc
Confidence            000 00             00000000   011445677776533 22  36778889999999999987433       


Q ss_pred             ---EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325          190 ---ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG  265 (368)
Q Consensus       190 ---~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  265 (368)
                         .....|..+|.++.+.+.- .=++|+.+..+..|.++......  +......-..-.+..+..-||++.+|+++.|+
T Consensus       196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl--q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~  273 (323)
T KOG0322|consen  196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL--QIRKEITLKNPGVSGVRIRPDGKILATAGWDH  273 (323)
T ss_pred             ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc--cccceEEecCCCccceEEccCCcEEeecccCC
Confidence               3344688899999887654 55677888899999987542211  11222222344588889999999999999999


Q ss_pred             cEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEec
Q 047325          266 LVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      +|++|..++...+ ..+.-|...+.+  |+|+..++++++.|++|.+|++
T Consensus       274 RiRVyswrtl~pL-AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEEEEeccCCch-hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999987665 677778887755  5567789999999999999975

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-14  Score=113.22  Aligned_cols=272  Identities=14%  Similarity=0.183  Sum_probs=171.7

Q ss_pred             cCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc-------eecccCCC------------CCeeEEEEe----CCEEEE
Q 047325           43 EEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE-------FCGFKASS------------GLVKAIVIS----GEKIFT   97 (368)
Q Consensus        43 h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~------------~~v~~~~~~----~~~l~s   97 (368)
                      ..+-|.++.|+  |++||||..+|.|.++.-.+.       ...++.|.            ..|..+.|.    ...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34568888886  889999999999999964321       12344443            357778886    446777


Q ss_pred             EeCCCeEEEEeecCCCccccccC----CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325           98 GHQDGKIRVWKISPKNQSVHKRA----GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS  173 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  173 (368)
                      .+.|.+|++|.+...........    ........+......+.........+...-..|+--|+++.++.|+..++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            78899999999876654331000    00000000000000001111111111112245888899999999999998876


Q ss_pred             CCCcEEEEEccCCeE---EEEeecC-----CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc-------
Q 047325          174 WDRTFKVWRISDSKC---LESVSAH-----DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA-------  236 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------  236 (368)
                       |=.|.+|+++-...   +..++.+     ..-|++..|+|..  .++-.+..|+|++-|+|...........       
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             67899999864322   2233333     3468888999987  7888889999999999954321111111       


Q ss_pred             ---eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc-----------------eEEEEEEeCC
Q 047325          237 ---QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK-----------------LAVLCLAAAG  296 (368)
Q Consensus       237 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  296 (368)
                         .-+..--..|..+.|+++|+++++-.. -+|++||+.....+.....-|.                 ..-.+++-++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence               111122356888999999999998754 6799999965555545554442                 1124555567


Q ss_pred             CEEEEeeCCCeEEEEecCCC
Q 047325          297 KLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~  316 (368)
                      .++++|+..+.+++++...+
T Consensus       342 ~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ceEecccccceEEEecCCCC
Confidence            79999999999999986543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=9.2e-16  Score=125.97  Aligned_cols=172  Identities=16%  Similarity=0.227  Sum_probs=128.0

Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCeEEEEee----cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC-------
Q 047325          164 QDCGLLYTASWDRTFKVWRISDSKCLESVS----AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG-------  230 (368)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~-------  230 (368)
                      |.+--++.|-.-|.|.+.|....+..+.+.    -....++|+.|-|.+  .++++-.+|.+++||.......       
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567788888999999986633222121    134689999999876  8888888999999986432110       


Q ss_pred             ---------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEE
Q 047325          231 ---------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLA  293 (368)
Q Consensus       231 ---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~  293 (368)
                                     ....++..+.-.++.|..++|+|||++||+.+.||.++|||..+.+... ..+.-  ....+|++
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg-~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG-VMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH-HHHhhccceEEEEEc
Confidence                           0001222233345689999999999999999999999999999866543 22211  23457888


Q ss_pred             eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          294 AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       294 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      |||+||++|++|-.|.||.+...  +.+..-.+|..+|+.++|.|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~er--RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEER--RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccc--eEEEeccccccceeeEeecc
Confidence            99999999999999999988876  78888899999999999995

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.6e-15  Score=122.45  Aligned_cols=272  Identities=17%  Similarity=0.164  Sum_probs=185.7

Q ss_pred             CcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCC-CeeEE-EEeCC--EEEEEeCCCeEEEEeecCCCc
Q 047325           42 REEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSG-LVKAI-VISGE--KIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        42 ~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~v~~~-~~~~~--~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      .|...-+.+..+++   .+|||-.--.|++||+.+.-..|..|.. .+..+ -.+.+  .++.-..|.+|.+-..-..-.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            56677777777655   7889999999999999887776766533 23333 23332  344445566665543221110


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      ..  +                                 -...-.+++++.-.--|+.++....|+-++++.|+.+..+..
T Consensus       129 ~~--R---------------------------------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~  173 (703)
T KOG2321|consen  129 RT--R---------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET  173 (703)
T ss_pred             ee--e---------------------------------cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence            00  0                                 122234566654333345555557899999999999999988


Q ss_pred             CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc-----cEEEEEEcCCCCEEEEecCCCcEE
Q 047325          195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-----AVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ..+.++++..++.. +|++|+.+|.|..||.+................+.+     .|+++.|+.+|-.+++|+.+|.+.
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~  253 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL  253 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence            88999999999877 899999999999999997654332222333333333     499999999999999999999999


Q ss_pred             EEeCCCccccceeeeccceEEEEEEeC----CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          269 FWEREKQLSHGGVLKGHKLAVLCLAAA----GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      |||++....+...-.+...++..+.+.    +..+++. ....++|||-.++  +....+. ....++.+++-|++-++.
T Consensus       254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G--k~~asiE-pt~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG--KPMASIE-PTSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC--Cceeecc-ccCCcCceeeecCCceEE
Confidence            999998877755555556677777762    3455543 4567999987666  5555554 344599999999998766


Q ss_pred             cCCcceEE
Q 047325          345 STSSCAQR  352 (368)
Q Consensus       345 ~~~~~~~~  352 (368)
                      ++..+..+
T Consensus       330 ~Ane~~~m  337 (703)
T KOG2321|consen  330 TANESSKM  337 (703)
T ss_pred             EecCCCcc
Confidence            66555444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=3.4e-15  Score=122.73  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=122.1

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLY  170 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  170 (368)
                      +--|+.|-.-|.+.+.|....+.........                            .-....|+|+.|-|. ...++
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r----------------------------~i~ktsvT~ikWvpg~~~~Fl  236 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEER----------------------------LINKSSVTCIKWVPGSDSLFL  236 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcc----------------------------cccccceEEEEEEeCCCceEE
Confidence            4568888888999988876522111111000                            004478999999984 45777


Q ss_pred             EEeCCCcEEEEEccCC----------------------------eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEE
Q 047325          171 TASWDRTFKVWRISDS----------------------------KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKV  221 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i  221 (368)
                      ++-.+|.+.+||..-.                            .++..+.--.+.|..++|+||| +|++.+.||.++|
T Consensus       237 ~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRv  316 (636)
T KOG2394|consen  237 VAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRI  316 (636)
T ss_pred             EEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEE
Confidence            7788999999976321                            0111222234578889999999 9999999999999


Q ss_pred             EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC
Q 047325          222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA  295 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  295 (368)
                      ||....      .+.-.....-+...|++|+|||++|++|++|.-|.||.+...+.. ..-.+|...|..+.+|
T Consensus       317 F~fdt~------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-ARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  317 FDFDTQ------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-ARGQGHKSWVSVVAFD  383 (636)
T ss_pred             eeccHH------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE-EeccccccceeeEeec
Confidence            999754      233344455678999999999999999999999999999876554 6677888888666555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.6e-15  Score=131.33  Aligned_cols=189  Identities=13%  Similarity=0.092  Sum_probs=124.4

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEE--E
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVW--K  223 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~--d  223 (368)
                      +...+....|+||++.|+.++.+   ..|.+||+.+++.  +..+.+   ....++|+|+| .|+.+ ..+|.+.+|  |
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  278 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMG  278 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence            67789999999999999887654   3699999988754  333333   34468999999 66655 467876666  5


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      +...       ....+..+...+....|+||++.|+..+ .+|...+|++.......... .+......++||+++|+..
T Consensus       279 ~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~  350 (429)
T PRK01742        279 ANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMI  350 (429)
T ss_pred             CCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEE
Confidence            4332       1233445566678899999999776554 57888888765322111222 2222335688999999888


Q ss_pred             eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC--cceEEEEEee
Q 047325          303 SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYS  357 (368)
Q Consensus       303 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~s  357 (368)
                      +.++ +.+||+.++....+.  ..+  ...++.|+|+|+++++++  +...+|.+.+
T Consensus       351 ~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        351 NGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             cCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            7765 556888776433221  122  235678999999887654  4456666553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7.5e-16  Score=125.00  Aligned_cols=248  Identities=15%  Similarity=0.202  Sum_probs=174.8

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+..|.+.|..+.|+  |..|++|+.|..|.+||.........+..+                               |.
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG-------------------------------H~  185 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG-------------------------------HC  185 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccc-------------------------------cc
Confidence            467899999999999  999999999999999999988876665544                               88


Q ss_pred             CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccC-CeE--EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISD-SKC--LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~  227 (368)
                      ..|....|-|  +...+++++.||.+++=.+.. +.+  ...+..|.++|.-++.-|+.  .|.+++.|+.+.-+|++..
T Consensus       186 ~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~  265 (559)
T KOG1334|consen  186 NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD  265 (559)
T ss_pred             cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence            8888888888  456899999999999877643 322  34566799999999999988  8999999999999999976


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc------cee-----eeccceEEEEEEe-
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH------GGV-----LKGHKLAVLCLAA-  294 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------~~~-----~~~~~~~~~~~~~-  294 (368)
                      .......+...-....-....++..|.. +.+++|+.|..+++||.+.-...      ...     .......|+++.+ 
T Consensus       266 ~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys  345 (559)
T KOG1334|consen  266 VPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS  345 (559)
T ss_pred             CccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence            5422222111111112357888888844 58999999999999998742211      111     1122344555554 


Q ss_pred             -CCCEEEEeeCCCeEEEEecCCCce----------eeeEe-eecccc--CeeEEEE-ecCCeeeecCCcceEEEEEeeCC
Q 047325          295 -AGKLVFSGSADKTICVWRRDGAIH----------TCLSV-LTGHTG--PVKCLAV-EEDRDSSSSTSSCAQRWIVYSGS  359 (368)
Q Consensus       295 -~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~-~~~h~~--~v~~l~~-~~~~~~~~~~~~~~~~w~l~sg~  359 (368)
                       ++.-|.++-.|-.|+++.-..+.+          ..+.. +++|.+  .|..+-| -|...            ++++||
T Consensus       346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE------------yVvSGS  413 (559)
T KOG1334|consen  346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE------------YVVSGS  413 (559)
T ss_pred             CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc------------eEEecC
Confidence             555555566677899996433322          22333 788875  4777765 46777            455666


Q ss_pred             cccccccC
Q 047325          360 LDKSDDDV  367 (368)
Q Consensus       360 ~D~~v~i~  367 (368)
                      +-|.|.||
T Consensus       414 DCGhIFiW  421 (559)
T KOG1334|consen  414 DCGHIFIW  421 (559)
T ss_pred             ccceEEEE
Confidence            66666655

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=1.1e-16  Score=128.94  Aligned_cols=226  Identities=14%  Similarity=0.197  Sum_probs=178.8

Q ss_pred             eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      -..+.+.  |..|+.|+.-|.|..+|..+......+.                                 -...|.++.|
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------------------------v~Etv~Dv~~  178 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------------------------VMETVRDVTF  178 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeee---------------------------------hhhhhhhhhh
Confidence            3455665  8899999999999999999887544333                                 3467888999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                      ..+.+++|++- ...+.+||- .|..++.++.| ..|..+.|.|.. +|++++..|.++.-|+..++      .+..+..
T Consensus       179 LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~~~t  249 (545)
T KOG1272|consen  179 LHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK------LVASIRT  249 (545)
T ss_pred             hcchHHHHhhh-hceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhh------hhHHHHc
Confidence            88888887775 578999994 67778888765 568899999999 88899999999999998873      4666666


Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCcee
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~  319 (368)
                      ..+.+..++-+|-...+-+|...|+|.+|.....+.+ ..+..|.++|.+++  ++|+|++|.+.|..++|||++..  .
T Consensus       250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL-vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~--~  326 (545)
T KOG1272|consen  250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL-VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF--Y  326 (545)
T ss_pred             cCCccchhhcCCccceEEEcCCCceEEecCCCCcchH-HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc--c
Confidence            7788888999998889999999999999998876666 44556888885554  57999999999999999999876  3


Q ss_pred             eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEe
Q 047325          320 CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVY  356 (368)
Q Consensus       320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~  356 (368)
                      .+.++.. .-+...+++|..|...++-...+.+|.=+
T Consensus       327 ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  327 QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDA  362 (545)
T ss_pred             ccceeec-CCCccccccccccceeeecCCeeeeehhh
Confidence            3444433 45678899999888666666667777533

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.9e-14  Score=123.15  Aligned_cols=230  Identities=13%  Similarity=0.033  Sum_probs=149.0

Q ss_pred             cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEe---CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325           65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGH---QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN  138 (368)
Q Consensus        65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (368)
                      .|.+||.... ...+..+...+.+..|+  |+.|+..+   .+..|.+|++.+++......                   
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-------------------  240 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence            6888887643 34455566788889998  77777654   24578899987765322111                   


Q ss_pred             eeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325          139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS  214 (368)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  214 (368)
                                    ....+....|+|||+.|+.. +.+|  .|.+||+.+++.... ..+...+....|+|+| .|+..+
T Consensus       241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s  305 (429)
T PRK03629        241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS  305 (429)
T ss_pred             --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence                          22234467999999988765 4444  588999988776543 3344567788999999 565554


Q ss_pred             C-CCeEEEE--EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceE
Q 047325          215 A-DGTVKVW--KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLA  288 (368)
Q Consensus       215 ~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~  288 (368)
                      . ++...+|  |+..+.       ...+...........|+|+|++|+..+.+   ..|.+||+.++... .........
T Consensus       306 ~~~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~  377 (429)
T PRK03629        306 DQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDE  377 (429)
T ss_pred             CCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCC
Confidence            4 4444555  554331       12222233345678899999998876543   35888998866432 111222223


Q ss_pred             EEEEEeCCCEEEEeeCCCe---EEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          289 VLCLAAAGKLVFSGSADKT---ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ...++|||+.|+.++.++.   +.+++++..   ....+.+|.+.+...+|+|-
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~---~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR---FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCCC---CeEECccCCCCcCCcccCCC
Confidence            4678899999999888765   666666543   34556678888999999873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.68  E-value=1.2e-14  Score=128.51  Aligned_cols=193  Identities=20%  Similarity=0.218  Sum_probs=152.8

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce----EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV----NSVVSSSEG-LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      +.|....+....+.++.++.++.+.+||...+.....+...+...    .-+-.+++. ++++|+.-+.|.+|+....+ 
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-  166 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-  166 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-
Confidence            344445555567788888889999999998887777665433221    112334555 89999999999999998332 


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  309 (368)
                           ....+.+|++.|.++.++.+|.++++.++|..+++|++++.+.......+|+..+.........+++++.|.+.+
T Consensus       167 -----~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcr  241 (967)
T KOG0974|consen  167 -----KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCR  241 (967)
T ss_pred             -----CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEE
Confidence                 222678999999999999999999999999999999999988887778899999966666555999999999999


Q ss_pred             EEecCCCceeeeEeeecccc-CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          310 VWRRDGAIHTCLSVLTGHTG-PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +|+.+..   .+..+.+|.. .|..++..++..            ..+|++.|+.+|+|+
T Consensus       242 vW~~~~~---~l~~y~~h~g~~iw~~~~~~~~~------------~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  242 VWGVNGT---QLEVYDEHSGKGIWKIAVPIGVI------------IKVTGGNDSTLKLWD  286 (967)
T ss_pred             EEecccc---eehhhhhhhhcceeEEEEcCCce------------EEEeeccCcchhhhh
Confidence            9976654   3447777765 599999988877            788999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=7.5e-14  Score=107.65  Aligned_cols=167  Identities=17%  Similarity=0.314  Sum_probs=117.2

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS  253 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~  253 (368)
                      +.+.|||=...+++.++. ...+|.++.+.++..+++  ..+.|++|.....-+     ....+  ........+++-..
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k-----~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPK-----LLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChh-----heeeeecccCCCceEeecCCC
Confidence            479999977778888876 568899999988853332  367899999874311     22222  22233344444443


Q ss_pred             CCCEEEE-ecCCCcEEEEeCCCccc-cceeeeccceEEEEEEe--CCCEEEEeeCCCe-EEEEecCCCceeeeEeeecc-
Q 047325          254 SRSIVYC-GSSDGLVNFWEREKQLS-HGGVLKGHKLAVLCLAA--AGKLVFSGSADKT-ICVWRRDGAIHTCLSVLTGH-  327 (368)
Q Consensus       254 ~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h-  327 (368)
                      +..+||. |-.-|.|.|-|+...+. .......|...+.|++-  +|.++|++|..|+ |||||..++  ..+++++.- 
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~  224 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--TLLQELRRGV  224 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--cEeeeeecCC
Confidence            4445554 55679999999986554 34678899998877765  7999999999998 899988776  667776543 


Q ss_pred             -ccCeeEEEEecCCeeeecCCcceEE
Q 047325          328 -TGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       328 -~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                       ...|.+|+|||+..++|.++..+.+
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeE
Confidence             3469999999999966555544333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.66  E-value=1.9e-14  Score=112.01  Aligned_cols=249  Identities=17%  Similarity=0.280  Sum_probs=178.9

Q ss_pred             CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcce----ecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEF----CGFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      ....++..++||.+.|++...-  .+-+++.+.|.++|||--....    .....-..+++++.+.  ...|+.|-..|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            3445667789999999877654  4489999999999999543221    1233456778888887  567888999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      +.-+.+...-...                            ...+.+..|...|..+.|+.....+++.+.|..+.---.
T Consensus        92 vtefs~sedfnkm----------------------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   92 VTEFALSEDFNKM----------------------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             EEEEEhhhhhhhc----------------------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence            9888765432111                            112233449999999999998889999999887665555


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      +.+..+..+.-. ....++.+.-. +.+.|...|.|.+-.+.....    .+...+.+|.+.+.+++|.|....|++|..
T Consensus       144 e~~~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~  217 (404)
T KOG1409|consen  144 ESGNRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGAS  217 (404)
T ss_pred             ccCCcccceEee-ccCCCCceeeE-EEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence            555544332210 01111111111 566677778777777654332    467788999999999999999999999999


Q ss_pred             CCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecC
Q 047325          264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~  314 (368)
                      |..+.+||+...........+|...+..++.  --+.+.+++.||.|.+|+++
T Consensus       218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            9999999998777776788888888866554  56789999999999999965

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=6.7e-13  Score=102.49  Aligned_cols=228  Identities=11%  Similarity=0.227  Sum_probs=151.3

Q ss_pred             EEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCC--CCeeEEEEeCCEEEE-EeCC------CeEEEEeecCCC
Q 047325           47 IYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASS--GLVKAIVISGEKIFT-GHQD------GKIRVWKISPKN  113 (368)
Q Consensus        47 i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~--~~v~~~~~~~~~l~s-~~~d------g~i~vw~~~~~~  113 (368)
                      ..+++|+.+  -+++|.++| .|||+...  +....+.+.  -.+..+-|..++|+- |+.+      ..+.|||=....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            445888766  677777766 78998653  211111122  233344444565554 4333      368999933222


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCeEEEEe
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSKCLESV  192 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~  192 (368)
                      +...                                 .....+|.++.+.++  .|++.- .+.|.+|... ..+.++.+
T Consensus        87 ~i~e---------------------------------l~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~  130 (346)
T KOG2111|consen   87 CIIE---------------------------------LSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVI  130 (346)
T ss_pred             EEEE---------------------------------EEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeee
Confidence            2111                                 126688999999876  566665 4789999987 44555555


Q ss_pred             ecC--CCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc-E
Q 047325          193 SAH--DDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL-V  267 (368)
Q Consensus       193 ~~~--~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i  267 (368)
                      ...  ...+.+++-..+. .|+ -|-.-|.|.+-|+.....    .....+..|.+.|.|++.+.+|..+|+++..|+ |
T Consensus       131 et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI  206 (346)
T KOG2111|consen  131 ETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLI  206 (346)
T ss_pred             ecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence            432  2234444433333 333 345679999999986532    134677889999999999999999999999997 7


Q ss_pred             EEEeCCCccccceeeecc---ceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          268 NFWEREKQLSHGGVLKGH---KLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      +|||.+++..+....++-   ....++|+|+..+|+++|+-|+|+||.+..
T Consensus       207 RIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  207 RIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999988775554442   233366778999999999999999998854

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.3e-13  Score=105.96  Aligned_cols=235  Identities=16%  Similarity=0.194  Sum_probs=155.5

Q ss_pred             CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc----------------eecccCCCCCeeEEEEe--CCEEEEEeC-C
Q 047325           44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE----------------FCGFKASSGLVKAIVIS--GEKIFTGHQ-D  101 (368)
Q Consensus        44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~----------------~~~~~~~~~~v~~~~~~--~~~l~s~~~-d  101 (368)
                      ...|+|++|-|.   .|+.|+..| |.+|.....                +....+| .+|+++.|+  |..+++++. |
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            356999999644   888888766 889964311                2223455 689999998  778888775 6


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ..|.|||.+++........                                -.+.+.-+.|+||+.+|+++.-|+..++|
T Consensus       218 ssi~iWdpdtg~~~pL~~~--------------------------------glgg~slLkwSPdgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPK--------------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLW  265 (445)
T ss_pred             ceEEEEcCCCCCccccccc--------------------------------CCCceeeEEEcCCCCEEEEecccceeeee
Confidence            7899999999876544422                                34677889999999999999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc---------ccceee-----c----c
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH---------SLAQTL-----L----K  241 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~-----~----~  241 (368)
                      +.....-.....-..+.|...+|+|.|  +|++.+..-.+  |.+...++....         .++..+     .    .
T Consensus       266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l  343 (445)
T KOG2139|consen  266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL  343 (445)
T ss_pred             hhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence            654433222233345589999999999  56666544444  433222211000         000000     0    1


Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCc--------EEEEeCCCccccc----eeeeccceEEEEEEe---CCCEEEEeeCCC
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGL--------VNFWEREKQLSHG----GVLKGHKLAVLCLAA---AGKLVFSGSADK  306 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~~~~----~~~~~~~~~~~~~~~---~~~~l~~~~~dg  306 (368)
                      ..+.+.+++|.|.|.+|++.-..+.        |.+||.+......    ....+.....++|.|   ++.+|..+-..|
T Consensus       344 ~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG  423 (445)
T KOG2139|consen  344 CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG  423 (445)
T ss_pred             ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence            1467899999999999998765443        6677776533221    122233334466776   577888888889


Q ss_pred             eEEEEecC
Q 047325          307 TICVWRRD  314 (368)
Q Consensus       307 ~i~iw~~~  314 (368)
                      .+.-|++.
T Consensus       424 riq~ypl~  431 (445)
T KOG2139|consen  424 RIQRYPLT  431 (445)
T ss_pred             ceEeeeeE
Confidence            88888654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.2e-13  Score=119.47  Aligned_cols=185  Identities=15%  Similarity=0.112  Sum_probs=120.3

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQH  227 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~  227 (368)
                      +...+.+.+|+||++.|+..+.+   ..|.+||+.+++... +....+.+....|+||| .|+ +.+.+|...+|.++..
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            66778899999999998877643   359999999887543 33334556788999999 554 5677887777665432


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeC--CCccccceeeeccceEEEEEEeCCCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWER--EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      ..     ....+..+........|+|||+.|+..+. +|...+|.+  .++........+.......++|||++|+..+.
T Consensus       273 ~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        273 GS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            21     12333334444567889999998876553 455566654  44332211222222223578999999987765


Q ss_pred             CC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          305 DK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       305 dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ++   .|.+||+.++....   +.. ........|+|||+.++.+.
T Consensus       348 ~~g~~~I~v~d~~~g~~~~---lt~-~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVTA---LTD-TTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             cCCcEEEEEEECCCCCeEE---ccC-CCCccCceECCCCCEEEEEE
Confidence            54   69999987764332   222 22346789999999877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2e-13  Score=117.99  Aligned_cols=183  Identities=10%  Similarity=0.017  Sum_probs=118.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-EcCCC--eEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-GSADG--TVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~~dg--~i~i~d~~  225 (368)
                      +...+...+|+|||+.|+..+.   +..|.+||+.+++..... .....+....|+||| .|+. ...+|  .|++||+.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            5567889999999998886542   357999999887643322 223334568999999 5554 34444  58889987


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-Cc--EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GL--VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      .+.       ...+..+...+....|+|+++.|+..+.+ +.  |+++|+.++........+.......++|||++|+..
T Consensus       276 tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        276 SGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             CCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            542       22333344567789999999988776654 44  555566654332212222233346788999988776


Q ss_pred             eCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          303 SAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       303 ~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      +.+   ..|.+||++++....+.   . ........|+|||+.++.++
T Consensus       349 ~~~~g~~~I~~~dl~~g~~~~Lt---~-~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        349 SSNGGQQHIAKQDLATGGVQVLT---D-TFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             EccCCCceEEEEECCCCCeEEeC---C-CCCCCCceECCCCCEEEEEE
Confidence            543   35888888776433322   1 12234678999999887665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=9.6e-14  Score=120.09  Aligned_cols=233  Identities=14%  Similarity=0.104  Sum_probs=143.8

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      ..|.++|.... ...+..+...+.+.+|+  |+.|+..+.+   ..|.+||+.+++.....                   
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------------------  236 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-------------------  236 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------
Confidence            45777776532 34455677788888887  7778776643   35999999877532211                   


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCCcEEEEE--ccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDRTFKVWR--ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  213 (368)
                                    .....+....|+||++.|+ +.+.++...||.  +..+. ...+..+........|+||| .|+..
T Consensus       237 --------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~  301 (427)
T PRK02889        237 --------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFT  301 (427)
T ss_pred             --------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEE
Confidence                          1223456789999998876 456777766665  44443 44555555556678899999 55544


Q ss_pred             c-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccceEE
Q 047325          214 S-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAV  289 (368)
Q Consensus       214 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~  289 (368)
                      + .+|...+|.+.....     ....+...........|+|+|++|+..+.++   .|.+||+.++... ..........
T Consensus       302 s~~~g~~~Iy~~~~~~g-----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~  375 (427)
T PRK02889        302 SDRGGAPQIYRMPASGG-----AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDES  375 (427)
T ss_pred             ecCCCCcEEEEEECCCC-----ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccC
Confidence            4 456667776543221     0111111222334678999999998776554   5999998865433 1222222344


Q ss_pred             EEEEeCCCEEEEeeCCC-e--EEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          290 LCLAAAGKLVFSGSADK-T--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       290 ~~~~~~~~~l~~~~~dg-~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ..++||++.|+.++.++ .  +.+.+++.   .....+..+.+.+...+|+|-
T Consensus       376 p~~spdg~~l~~~~~~~g~~~l~~~~~~g---~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        376 PSFAPNGRYILYATQQGGRSVLAAVSSDG---RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ceECCCCCEEEEEEecCCCEEEEEEECCC---CceEEeecCCCCCCCCccCCC
Confidence            67899999888776544 3  44444433   334445556667778888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.6e-13  Score=119.11  Aligned_cols=230  Identities=15%  Similarity=0.086  Sum_probs=146.1

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      ..|.+||.... ...+..+...+.+..|+  ++.|+..+.+   ..|.+||+.+++......                  
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~------------------  245 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS------------------  245 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc------------------
Confidence            36888987633 44566677788888887  7788877643   469999997765321111                  


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  213 (368)
                                     ......+..|+|+++.|+ +.+.+|  .|.+||+.+++.. .+..+........|+|++ .|+..
T Consensus       246 ---------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~  309 (433)
T PRK04922        246 ---------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFT  309 (433)
T ss_pred             ---------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence                           223345689999998775 445555  5999999887654 444455555678999999 56555


Q ss_pred             c-CCCe--EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccce
Q 047325          214 S-ADGT--VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       214 ~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      + .+|.  |+++|+..+.       ...+..........+|+|+|++|+..+.++   .|.+||+.++... ....+...
T Consensus       310 sd~~g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~  381 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD  381 (433)
T ss_pred             ECCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence            4 4554  6666665431       111212223345689999999988765443   5899998765433 12222222


Q ss_pred             EEEEEEeCCCEEEEeeCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          288 AVLCLAAAGKLVFSGSAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       288 ~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      .-..+++||++|+..+.+   +.|.+++++..   ....+..+.+.+...+|+|
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~---~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR---VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCCC---ceEEcccCCCCCCCCccCC
Confidence            335788999987776653   35777776543   3344444556677778876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.4e-13  Score=119.57  Aligned_cols=191  Identities=14%  Similarity=0.055  Sum_probs=124.4

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCC--eEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADG--TVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg--~i~i~d~~  225 (368)
                      +...+.+.+|+||++.|+..+.+   ..|.+||+.+++... +....+...+..|+|+| .+ ++.+.+|  .|++||+.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            66678899999999998887643   469999998876543 33334445578999999 45 4445555  69999987


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCc--EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGL--VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      .+.       ...+..+.......+|+|+++.|+..+. +|.  |+++|+.++........+......+++|+|++|+..
T Consensus       281 ~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        281 SRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            642       2333344444567899999998887653 444  666777654432222223333346889999998876


Q ss_pred             eCCC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC---cceEEEEE
Q 047325          303 SADK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS---SCAQRWIV  355 (368)
Q Consensus       303 ~~dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~---~~~~~w~l  355 (368)
                      +.++   .|.+||+.++...   .+. +........|+|||+.++...   +...+|.+
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            5433   5899998776333   222 223455679999999776543   23445444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5e-13  Score=116.22  Aligned_cols=182  Identities=13%  Similarity=0.056  Sum_probs=122.1

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCe--EEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGT--VKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~--i~i~d~~  225 (368)
                      +...+.+..|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+....|+|+| .| ++.+.++.  |++||+.
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  278 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR  278 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence            7778999999999998887763   468999999888654 344456677788999999 54 45555554  7777876


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      ...       ...+..+........|+||++.|+..+. +|  .|+++|+..+................++|+|+.|+..
T Consensus       279 ~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        279 SGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             CCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            542       2334445555677899999998887653 33  6888887765332111111122235688999998876


Q ss_pred             eCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          303 SAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       303 ~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      ..+   ..|.+||++.....   .+. ....+....|+|||+.++..
T Consensus       352 ~~~~~~~~i~~~d~~~~~~~---~lt-~~~~~~~p~~spDG~~i~~~  394 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGER---ILT-SGFLVEGPTWAPNGRVIMFF  394 (435)
T ss_pred             EcCCCceEEEEEECCCCceE---ecc-CCCCCCCCeECCCCCEEEEE
Confidence            543   35788887554222   222 22346788999999987654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=8.5e-13  Score=114.81  Aligned_cols=229  Identities=10%  Similarity=0.033  Sum_probs=146.3

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      ..|.++|.... ...+..|...+.+..|+  |+.|+..+.   +..|.+||+.+++....                    
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------------  241 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------------  241 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------
Confidence            37888887643 34566788889999998  777777653   46899999987653211                    


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  213 (368)
                                   ..+...+....|+|||+.|+ +.+.++.  |.+||+.+++.. .+..+........|+|++ .++..
T Consensus       242 -------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~  307 (435)
T PRK05137        242 -------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFE  307 (435)
T ss_pred             -------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEE
Confidence                         11445667889999998775 5555554  777798877653 455555566778999999 55555


Q ss_pred             c-CCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccce
Q 047325          214 S-ADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       214 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      + .+|  .|+++|+....       ...+......+....|+|+++.|+....+   ..|.+||+..+... ....+...
T Consensus       308 s~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~  379 (435)
T PRK05137        308 SDRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLV  379 (435)
T ss_pred             ECCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCC
Confidence            4 333  67788875431       22222234456678899999999876543   36888887654322 12122233


Q ss_pred             EEEEEEeCCCEEEEeeCC------CeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          288 AVLCLAAAGKLVFSGSAD------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       288 ~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      ....++|||+.|+..+.+      ..+.+++++....   ..+. ..+.+...+|+|
T Consensus       380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE---REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce---EEcc-CCCCccCcccCC
Confidence            446789999988765442      2577777766532   2232 233456667766

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.6e-13  Score=104.60  Aligned_cols=149  Identities=13%  Similarity=0.248  Sum_probs=104.0

Q ss_pred             eEEEEcCCCCEEEEEeC----------CCcEEEEEccC-CeEEEEeec-CCCceEEEEeCCCC-eE--EEEcCCCeEEEE
Q 047325          158 SCMSLDQDCGLLYTASW----------DRTFKVWRISD-SKCLESVSA-HDDAVNSVVSSSEG-LI--FTGSADGTVKVW  222 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~-~l--~~~~~dg~i~i~  222 (368)
                      ..+.|+|+|++|++-..          -+...+|.++. +.+...+.- ..++|.+++|+|++ .+  +.|..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35788999887765443          12355555532 234444433 34579999999999 44  345567899999


Q ss_pred             EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC---CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEE
Q 047325          223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLV  299 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  299 (368)
                      |++..       ....+  ....+..+.|+|+|++|++++.   .|.|.+||.++.+.+ ...........+++|+|++|
T Consensus        89 d~~~~-------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~~~~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   89 DVKGK-------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STFEHSDATDVEWSPDGRYL  158 (194)
T ss_pred             cCccc-------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-eccccCcEEEEEEcCCCCEE
Confidence            99622       23333  3456789999999999999864   467999999976555 33344445568899999999


Q ss_pred             EEeeC------CCeEEEEecCCC
Q 047325          300 FSGSA------DKTICVWRRDGA  316 (368)
Q Consensus       300 ~~~~~------dg~i~iw~~~~~  316 (368)
                      +++..      |+.++||++...
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEeccceeccccEEEEEecCe
Confidence            99874      788999988653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=1e-12  Score=100.42  Aligned_cols=266  Identities=11%  Similarity=0.115  Sum_probs=169.5

Q ss_pred             CCCcEEEEcCCccee-----cccCCCCCeeEEEEe-----CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           62 DSKNIRVWKNLKEFC-----GFKASSGLVKAIVIS-----GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        62 ~dg~i~iw~~~~~~~-----~~~~~~~~v~~~~~~-----~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      .-|.+.++++.....     ........+..+.|.     +. .++-+-.+|.|.++...........+.-.....    
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----  119 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh----
Confidence            346777887653211     112234456666665     44 566777789999988765543222211100000    


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~  208 (368)
                                            ......++.|++.+..++++..+|.+.+-+.......  +..+.|+.++....|+...
T Consensus       120 ----------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~  177 (339)
T KOG0280|consen  120 ----------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE  177 (339)
T ss_pred             ----------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC
Confidence                                  1113457888998889999999999997766555443  4788999999999888765


Q ss_pred             --eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccc-eeeec
Q 047325          209 --LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHG-GVLKG  284 (368)
Q Consensus       209 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~  284 (368)
                        .+++|+.|+.+..||+|.++.    ..-.....|...|.+|.-+| .+.++++|+.|..|++||.++..++. ....+
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~  253 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG  253 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc
Confidence              899999999999999995432    23333566888999998887 57799999999999999999544332 22222


Q ss_pred             cceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCcee---eeEeeeccccCeeEEEEecCCeeeecCCcc----eEEEEE
Q 047325          285 HKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHT---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSC----AQRWIV  355 (368)
Q Consensus       285 ~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~----~~~w~l  355 (368)
                      -......-+|.  +.+|+++-.+| .+|-+......+   .....+.|.+-...-.|.....++|+++..    .++|..
T Consensus       254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence            22222333442  44556655555 666666554333   445556677777777775555566765432    235666


Q ss_pred             eeC
Q 047325          356 YSG  358 (368)
Q Consensus       356 ~sg  358 (368)
                      +|+
T Consensus       333 ~t~  335 (339)
T KOG0280|consen  333 ITG  335 (339)
T ss_pred             ccC
Confidence            654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=2.6e-12  Score=99.81  Aligned_cols=287  Identities=13%  Similarity=0.194  Sum_probs=171.8

Q ss_pred             CcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--C-CEEEEEeCCCeEEEEeecCCCccc
Q 047325           45 GHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--G-EKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        45 ~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      +.|.-+.+.-+   .|.....|+.|.+|++.+.  .+.......++.+++|+  | ..|.+...|-.|.+|.+.+.....
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            34555666544   6677788999999999865  34566677789999998  5 467788889999999998876533


Q ss_pred             cccCCccccceeeeeccCCCCc-eeEe-cccce---------------eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSN-YIEV-RRHRT---------------ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .........     ...+++.. +..+ .+...               +.+.-.+-..+.+.|+|||+.|++        
T Consensus       129 ~~~pK~~~k-----g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------  195 (447)
T KOG4497|consen  129 LPHPKTNVK-----GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------  195 (447)
T ss_pred             ecccccCce-----eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE--------
Confidence            322211110     00111111 1000 00000               011112334566777777665543        


Q ss_pred             EEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC----------------------------
Q 047325          180 VWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG----------------------------  230 (368)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----------------------------  230 (368)
                       ||..-.-.+..+. ..-.+..++|+|.+ .|++|+.|+.+++.+--+-+..                            
T Consensus       196 -wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~  273 (447)
T KOG4497|consen  196 -WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL  273 (447)
T ss_pred             -ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence             4322111111121 23467889999977 9999999999887642110000                            


Q ss_pred             --------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCC--CcEEEEeCCCcc
Q 047325          231 --------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD--GLVNFWEREKQL  276 (368)
Q Consensus       231 --------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~  276 (368)
                                                      ...++.....+....+--++|++|..++++-...  +.+-+||++..+
T Consensus       274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~  353 (447)
T KOG4497|consen  274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK  353 (447)
T ss_pred             ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence                                            0000111122234467789999999998886543  568999999876


Q ss_pred             ccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325          277 SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      ........|......+.|....|+.+.....+++|.....  ..+. ..+..-.|..+.|..+|..++-.+.+
T Consensus       354 l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  354 LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence            6655556666666666666677777777778999966543  3333 23344679999999999966544433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.9e-13  Score=105.55  Aligned_cols=205  Identities=12%  Similarity=0.139  Sum_probs=144.1

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      ...+..++|++.-..++++..|-.|++||-.+ +....++ .....|+|++|-|.+  .|+.|+.. .|.+|........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34678899999777889999999999999876 4444444 345679999999988  67776654 5889987543221


Q ss_pred             cc--------cccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCcccccee-eeccceEEEEEEeCCCEEE
Q 047325          231 TK--------HSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVF  300 (368)
Q Consensus       231 ~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  300 (368)
                      ..        ...+....+| .+|+++.|.+||..+++++- |..|.|||..++....-. ........+.++||+.+|+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence            11        0111222333 78999999999999998874 568999999987654333 3334445789999999999


Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec-CCcceEEEEEeeCCcccc
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS-TSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~-~~~~~~~w~l~sg~~D~~  363 (368)
                      ++.-|+..++|+.... .... .+.--.+.|..-+|+|+|.++.. .++...++.+-.-+.|..
T Consensus       255 aAt~davfrlw~e~q~-wt~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQS-WTKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV  316 (445)
T ss_pred             Eecccceeeeehhccc-ceec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence            9999999999954332 1222 22223458999999999997664 456666666655555443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=5.7e-12  Score=105.81  Aligned_cols=248  Identities=11%  Similarity=0.114  Sum_probs=152.8

Q ss_pred             EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      ++++-..+|.|.+.|..+  .+..+......-..+.++  ++++++++.||.|.++|+.+.+.......           
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----------   76 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----------   76 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------
Confidence            445677789999999864  344555443333345565  78999999999999999999875444432           


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecC-------CCceEEEE
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAH-------DDAVNSVV  203 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~  203 (368)
                                            .....++++++||++++++. .++.+.++|.++.++++.+...       ...+..+.
T Consensus        77 ----------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv  134 (369)
T PF02239_consen   77 ----------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV  134 (369)
T ss_dssp             ----------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE
T ss_pred             ----------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE
Confidence                                  34457899999999998775 5899999999999999887643       34677787


Q ss_pred             eCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCccccce
Q 047325          204 SSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGG  280 (368)
Q Consensus       204 ~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~  280 (368)
                      .++..  ++++--..+.|.+.|......     ................|+|++++++. ...++.|.++|.++++....
T Consensus       135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  135 ASPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             E-SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             ecCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            77777  444445568898888775422     22223334456778899999998766 45566788888765432211


Q ss_pred             eee------------cc------------------------------------------c-eEEEEEEeCCCEEEEe---
Q 047325          281 VLK------------GH------------------------------------------K-LAVLCLAAAGKLVFSG---  302 (368)
Q Consensus       281 ~~~------------~~------------------------------------------~-~~~~~~~~~~~~l~~~---  302 (368)
                      ...            .|                                          . .--...+|+++++++.   
T Consensus       210 i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~  289 (369)
T PF02239_consen  210 IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFL  289 (369)
T ss_dssp             EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT
T ss_pred             eeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccC
Confidence            000            00                                          0 0012346788888887   


Q ss_pred             -eCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeee
Q 047325          303 -SADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSS  343 (368)
Q Consensus       303 -~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~  343 (368)
                       ..+++|.++|.++.  +.+..+... ...+..+.|+++|..+
T Consensus       290 ~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  290 NPDADTVQVIDKKTL--KVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             -SSHT-EEEEECCGT--EEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             CCCCceEEEEECcCc--ceeEEEeccCCCcEeccEECCCCCEE
Confidence             45588999988776  555555322 2359999999999953

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=1.7e-12  Score=99.06  Aligned_cols=112  Identities=12%  Similarity=0.233  Sum_probs=85.2

Q ss_pred             cCCCEeEEEEcCCCCEEEEE--eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTA--SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQ  226 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~  226 (368)
                      ..++|.+++|+|+++.|++.  ..++.|.+||++ ++.+..+.  ...++.+.|+|+| ++++++.   .|.|.+||.+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            34579999999999987655  356799999996 66676664  5677899999999 7777654   47799999985


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeCCCc
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWEREKQ  275 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~  275 (368)
                      ..      .+...  ....+..++|+|+|++|+++..      |+.++||+....
T Consensus       135 ~~------~i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  135 KK------KISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CE------Eeecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            41      22222  2334789999999999999874      677899998644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=7.3e-14  Score=129.97  Aligned_cols=197  Identities=19%  Similarity=0.294  Sum_probs=149.8

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      +.+-..|.++.-.  .-+.+||+.||.+++|....++.....+..                               -...
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s~ 2253 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNSR 2253 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccch
Confidence            3334444444433  458899999999999999888765554432                               2377


Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEc---CCCeEEEEEcCCCCCCccc
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS---ADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~  233 (368)
                      |+.+.|+.+|+.+..+..||.+.+|... .++....+.|+.....+.|.. ..+++++   .++.+.+||......   .
T Consensus      2254 vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~---~ 2328 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPM---N 2328 (2439)
T ss_pred             hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcc---c
Confidence            8899999999999999999999999986 677778888998888888876 3444443   478899999865432   1


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..+.  ..|.+.++++++.|..+.|++|+.+|.|++||++..+... .++.       +. ...++++|+..|.++||++
T Consensus      2329 s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h-~~~~-------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2329 SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH-TFQA-------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             ceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH-Hhhh-------hh-hhheeeccCcccceEEEEc
Confidence            2222  6799999999999999999999999999999999765442 2221       33 5679999999999999998


Q ss_pred             CCCceeeeEee
Q 047325          314 DGAIHTCLSVL  324 (368)
Q Consensus       314 ~~~~~~~~~~~  324 (368)
                      ...  ..+..+
T Consensus      2398 s~~--~ll~~~ 2406 (2439)
T KOG1064|consen 2398 SEF--GLLHTF 2406 (2439)
T ss_pred             ccc--chhhcC
Confidence            765  444444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=6.3e-12  Score=109.49  Aligned_cols=183  Identities=15%  Similarity=0.102  Sum_probs=119.7

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~  225 (368)
                      +...+....|+|++++|+.+..+   ..|++||+.+++... +..+...+.+++|+|++ .|+ +.+.++  .|++||+.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            55568888999999999887654   479999998876543 33345566778999999 454 445444  58888887


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      ...       ...+..+........|+|+++.|+..+. ++  .|+++|+.++........+.......++|++++|+.+
T Consensus       267 ~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       267 GKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence            542       2223333334456789999998876554 33  5778887765432222222333345788999999888


Q ss_pred             eCCC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          303 SADK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       303 ~~dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      +.++   .|.+||+.+.....   +... .......|+|++..++...
T Consensus       340 ~~~~~~~~i~~~d~~~~~~~~---l~~~-~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGERV---LTDT-GLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             EccCCceEEEEEeCCCCCeEE---ccCC-CCCCCceECCCCCEEEEEE
Confidence            8775   78888887653222   2211 2244568999998776553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=3.5e-12  Score=109.11  Aligned_cols=269  Identities=12%  Similarity=0.100  Sum_probs=184.9

Q ss_pred             CCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----------------eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----------------FCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----------------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      .....|++|+.+  ++|+|+.||.+++-.+.+.                 -+++.+|.+.|.-+.|+  .+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            456789999855  9999999999999975421                 23578999999999999  66788999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      .|.+|-+-.+.-......                              ....+.|.+++|+.+|..+.....||.|.+=.
T Consensus        94 lIiVWmlykgsW~EEMiN------------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMIN------------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             eEEEEeeecccHHHHHhh------------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            999999877653221111                              01567789999999999999999999998877


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC-cccccce----eeccccccEEEEEEc----
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG-TKHSLAQ----TLLKQECAVTALVVS----  252 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~----~~~~~~~~i~~~~~~----  252 (368)
                      +...+ +.--.-.......+.|++|. .++.+-.+|.+.++|.+..-.. ....+..    .+......|..+.|.    
T Consensus       144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            65432 22111112234577899998 7777788999999997643110 0000100    111122235555553    


Q ss_pred             ----CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---------CeEEEEecCCCcee
Q 047325          253 ----SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---------KTICVWRRDGAIHT  319 (368)
Q Consensus       253 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~  319 (368)
                          |+...|+.+..+|.+.+..-++...+.....+-...-..++++|..|++++.|         +.|++|   ++-+.
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy---sp~G~  299 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY---SPYGH  299 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEe---ccchh
Confidence                47789999999999988766655555434444333335566789999988764         356666   33346


Q ss_pred             eeEeeeccccCeeEEEEecCCeeeecC
Q 047325          320 CLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      .+.+++.....|++++|-..|..+|-+
T Consensus       300 i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  300 IVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             heEEEecCCceeeeeEEcCCceEEEEE
Confidence            677888888889999999988876644

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=9.9e-12  Score=108.26  Aligned_cols=209  Identities=11%  Similarity=0.046  Sum_probs=131.4

Q ss_pred             CcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           64 KNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        64 g~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      ..|.++|.. .....+..+...+....|+  |++|+.+..+   ..|.+||+.+++.....                   
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-------------------  230 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-------------------  230 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------
Confidence            357777775 3344455566677777887  7788776644   47999999876432111                   


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  213 (368)
                                    .+...+.+.+|+|+++.|+. .+.++  .|.+||+.+++... +..+........|+|++ .|+..
T Consensus       231 --------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~  295 (417)
T TIGR02800       231 --------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFT  295 (417)
T ss_pred             --------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEE
Confidence                          13345567899999987764 44444  58899998775433 33344445567899998 55544


Q ss_pred             cC-CC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccce
Q 047325          214 SA-DG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       214 ~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      +. ++  .|+++|+....       ...+..+........|+|++++++.++.++   .|.+||+.++.... .......
T Consensus       296 s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~  367 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLD  367 (417)
T ss_pred             ECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCC
Confidence            43 33  57777776431       222333445567789999999999888776   78899987643321 1111112


Q ss_pred             EEEEEEeCCCEEEEeeCCC---eEEEEecC
Q 047325          288 AVLCLAAAGKLVFSGSADK---TICVWRRD  314 (368)
Q Consensus       288 ~~~~~~~~~~~l~~~~~dg---~i~iw~~~  314 (368)
                      .-..++|+++.|+..+.++   .+++.+.+
T Consensus       368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            2247889999888776654   34444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.1e-11  Score=106.27  Aligned_cols=183  Identities=12%  Similarity=0.058  Sum_probs=118.2

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~  225 (368)
                      +...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+| .|+ +...+|  .|+++|+.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            56678899999999988776643   368999998886543 33333445578999999 554 455555  68888887


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      ...       ...+..+........|+|+++.|+..+. +|  .|+++|+.++........+.......++|+++.|+..
T Consensus       276 ~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        276 SRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             CCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            642       2223334444566789999998776553 33  5777787765433222223333346788999988876


Q ss_pred             eCC-C--eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          303 SAD-K--TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       303 ~~d-g--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      +.+ +  .|.++|+.++....+..    ........|+|||+.++.+.
T Consensus       349 ~~~~~~~~l~~~dl~tg~~~~lt~----~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSVRILTD----TSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EccCCceEEEEEECCCCCEEEccC----CCCCCCceECCCCCEEEEEE
Confidence            643 3  47888887764333321    12223568999999877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=2.3e-12  Score=100.63  Aligned_cols=252  Identities=13%  Similarity=0.203  Sum_probs=152.5

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ...-|.++.|+  |++|++|..+|.|.++.-+....-........       ......-.++        .-..-...|.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-------qshepEFDYL--------kSleieEKin   88 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-------QSHEPEFDYL--------KSLEIEEKIN   88 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-------eccCcccchh--------hhhhhhhhhh
Confidence            34568889988  99999999999999997554332000000000       0000000000        0001345788


Q ss_pred             EEEEcCCC--CEEEEEeCCCcEEEEEccCCeE-----------------------------------EEEe-ecCCCceE
Q 047325          159 CMSLDQDC--GLLYTASWDRTFKVWRISDSKC-----------------------------------LESV-SAHDDAVN  200 (368)
Q Consensus       159 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~  200 (368)
                      .+.|.+++  ..++..+.|.+|++|.+.....                                   .+.+ .+|.-.|+
T Consensus        89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN  168 (433)
T KOG1354|consen   89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN  168 (433)
T ss_pred             hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence            89998865  4677788899999998753211                                   0011 25777899


Q ss_pred             EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc--eeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccc
Q 047325          201 SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA--QTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       201 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      ++.++.|...+..+.|-.|.+|++..........-+  ........-|++..|+| ..+.++-.++.|+|++-|++....
T Consensus       169 SIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL  248 (433)
T KOG1354|consen  169 SISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL  248 (433)
T ss_pred             eeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence            999999995555677889999999765431111100  11122345688999999 457888899999999999984322


Q ss_pred             cce---ee--e----------ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc-----------
Q 047325          278 HGG---VL--K----------GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG-----------  329 (368)
Q Consensus       278 ~~~---~~--~----------~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----------  329 (368)
                      .-.   .+  .          .--..|  ..|+.+|+|+++-+. -+|++||+.... +++.++.-|..           
T Consensus       249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-CcceEEeehHhHHHHHHHHhhc
Confidence            110   00  0          001112  456678999987543 589999985432 45555555532           


Q ss_pred             -Ce---eEEEEecCCeeeecCCcc
Q 047325          330 -PV---KCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       330 -~v---~~l~~~~~~~~~~~~~~~  349 (368)
                       .|   ..++|+.++..+++++-.
T Consensus       327 D~IfdKFec~~sg~~~~v~TGsy~  350 (433)
T KOG1354|consen  327 DAIFDKFECSWSGNDSYVMTGSYN  350 (433)
T ss_pred             cchhheeEEEEcCCcceEeccccc
Confidence             22   357888888855555433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=1e-11  Score=95.98  Aligned_cols=268  Identities=16%  Similarity=0.238  Sum_probs=169.7

Q ss_pred             CCcEEEEEec--CCEEEEccCCCcEEEEcCCcc-------eecccCCCC------------CeeEEEEe----CCEEEEE
Q 047325           44 EGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE-------FCGFKASSG------------LVKAIVIS----GEKIFTG   98 (368)
Q Consensus        44 ~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~------------~v~~~~~~----~~~l~s~   98 (368)
                      .+.|+++.|+  |.+|++|...|.|.++.-...       ...+++|..            .|..+.|.    ...++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5669999997  569999999999999975422       234555543            47777775    2356667


Q ss_pred             eCCCeEEEEeecCCCccccccCCcc-----------ccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCC
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTL-----------PTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDC  166 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~  166 (368)
                      +.|.+|++|.+..............           .....+..... ......+...+.+++ ..|.--|.++.++.|.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl-s~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL-SEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc-cccceEEEeccceeccccceeEeeeeeecCch
Confidence            7899999999876643322211100           00000000000 011111112222333 5588889999999998


Q ss_pred             CEEEEEeCCCcEEEEEccCCe---EEEEeecCC-----CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          167 GLLYTASWDRTFKVWRISDSK---CLESVSAHD-----DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      ..++++. |=.|.+|++.-..   .+..++.|.     .-|++..|+|..  .+.-.+..|.|++-|+|+..........
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8888775 5789999986432   233344443     457888999987  6777788999999999965331111111


Q ss_pred             ----------eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc------------eE-----E
Q 047325          237 ----------QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK------------LA-----V  289 (368)
Q Consensus       237 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~~-----~  289 (368)
                                .-+.+-...|..+.|+++|+++++-+. -+|++||.+..+.+.....-|.            ..     -
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence                      111223357888999999999988755 5799999987665555543331            11     2


Q ss_pred             EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          290 LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       290 ~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ..++-|.+.+.+|+..+..-+|-.+
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEecCCcccccccccccceeeeccc
Confidence            4455677888899988888888643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.9e-11  Score=105.11  Aligned_cols=183  Identities=11%  Similarity=0.035  Sum_probs=112.5

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCe--EEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGT--VKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~--i~i~d~~  225 (368)
                      +...+.+..|+|||+.|+..+.+   ..|.++|+.+++... +....+......|+|+| .|+ +...++.  |+++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            55678889999999988776543   258899998876533 22223334567999999 454 4556664  7777876


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      .+.       ...+..+.......+|+||++.|+..+. ++  .|+++|+.++........++.....+++|||++|+..
T Consensus       295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence            542       2233334445667899999998876553 33  4666777665433222233333335789999988776


Q ss_pred             eC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          303 SA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       303 ~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      +. ++.  |.++|++++....   +... .......|+|+|+.++...
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~---lt~~-~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQV---LTST-RLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             EecCCceEEEEEECCCCCeEE---ccCC-CCCCCceECCCCCEEEEEE
Confidence            54 444  4455665553222   2211 1223458999999876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=1.2e-11  Score=96.20  Aligned_cols=188  Identities=13%  Similarity=0.171  Sum_probs=129.6

Q ss_pred             CeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           84 LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        84 ~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      +..++..+|+++++++.- .+.|-|.++-+....+.                                 .-+.|..+.|.
T Consensus        12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------------------------------cldki~yieW~   57 (447)
T KOG4497|consen   12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------------------------------CLDKIVYIEWK   57 (447)
T ss_pred             CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------HHHHhhheeee
Confidence            344555569999999866 77777777665332221                                 23456778888


Q ss_pred             CCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325          164 QDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL  240 (368)
Q Consensus       164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  240 (368)
                      .+.-+++++ ..++.|.+|++...+-...+.....++.+++|+|+|  .|.+...+-.|.+|.+.+..       ...+.
T Consensus        58 ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-------~~~~~  130 (447)
T KOG4497|consen   58 ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-------GYLLP  130 (447)
T ss_pred             ccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-------eEEec
Confidence            877665554 678899999999998888888888999999999999  67777789999999998652       22333


Q ss_pred             cccccEEEEEEcCCCCEEEEecCC------------------------------------CcEEEEeCCCccccceeeec
Q 047325          241 KQECAVTALVVSSSRSIVYCGSSD------------------------------------GLVNFWEREKQLSHGGVLKG  284 (368)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~~~~~~~~~~~~  284 (368)
                      -.+..+..++|+|+|++.+..+.-                                    ..+.+||.--.........+
T Consensus       131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~  210 (447)
T KOG4497|consen  131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG  210 (447)
T ss_pred             ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence            334456778888888877766431                                    22444543211111111122


Q ss_pred             cceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          285 HKLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       285 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                      -......++|.+++|++|+.|+.+||-+
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhhc
Confidence            2334467788999999999999998865

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=3.8e-12  Score=112.99  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=143.1

Q ss_pred             EEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325           88 IVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG  167 (368)
Q Consensus        88 ~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  167 (368)
                      +.+....++.++.+..+-+||.................                            -....-+.++++.-
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~----------------------------l~~~~~~g~s~~~~  146 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT----------------------------LYSSLIIGDSAEEL  146 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE----------------------------EEeEEEEeccCcEE
Confidence            33447789999999999999998776544433221100                            01112233455666


Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      ++++|+.-+.|.+|+....+.-..+.+|++.|.++.++.+| ++++.+.|+++++|++.+...     ......+|...+
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRv  221 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARV  221 (967)
T ss_pred             EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCccccccccee
Confidence            89999999999999987444444688999999999999999 999999999999999987643     224567899999


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce---EEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL---AVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ..++|.|+  .++++++|-+.++|+....+..  .+.+|..   .-..+.++...++|++.||.+++|++..
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~--~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE--VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecccceeh--hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999998  8999999999999976543322  4555543   2245556778899999999999998743

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=2.6e-11  Score=101.43  Aligned_cols=142  Identities=20%  Similarity=0.280  Sum_probs=117.3

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                      +...++-|...|.|.+|++..++....+.  .|.+.|.++.++.+- .|.+++.|+.+..|+....      .....+..
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~  142 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKE  142 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeecc
Confidence            45578888899999999999999888886  588999999988776 9999999999999999765      34566677


Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--C-----CCEEEE-eeCCCeEEEEec
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--A-----GKLVFS-GSADKTICVWRR  313 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~l~~-~~~dg~i~iw~~  313 (368)
                      ....+.+++.+||+..+++++  +.|++||+++.+.. ..+.+|..++.++++  +     |.++.+ ...+..+.+|-+
T Consensus       143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv-~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVV-ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEE-EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            777899999999999999987  68999999997665 788999999988876  2     455554 445667888876


Q ss_pred             CC
Q 047325          314 DG  315 (368)
Q Consensus       314 ~~  315 (368)
                      +.
T Consensus       220 ~~  221 (541)
T KOG4547|consen  220 EK  221 (541)
T ss_pred             Ec
Confidence            54

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=1.7e-09  Score=91.17  Aligned_cols=254  Identities=14%  Similarity=0.209  Sum_probs=153.8

Q ss_pred             CcEEEEcCC--cc-eecc--cCCCCCeeEEEEe--CCEEEEEeC----CCeEEEEeecCCC-ccccccCCccccceeeee
Q 047325           64 KNIRVWKNL--KE-FCGF--KASSGLVKAIVIS--GEKIFTGHQ----DGKIRVWKISPKN-QSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        64 g~i~iw~~~--~~-~~~~--~~~~~~v~~~~~~--~~~l~s~~~----dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~  131 (368)
                      +.|.+|++.  +. +...  .........++++  +++|++...    +|.|..|++.... ......            
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~------------   80 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN------------   80 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE------------
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee------------
Confidence            677777762  21 1111  1123334456664  788888876    5789999988752 111100            


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-CeEEEE---ee----------cCC
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-SKCLES---VS----------AHD  196 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~---~~----------~~~  196 (368)
                                       ...........++++|++++|+++.. +|.|.++++.. +.....   +.          ...
T Consensus        81 -----------------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~  143 (345)
T PF10282_consen   81 -----------------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEG  143 (345)
T ss_dssp             -----------------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSS
T ss_pred             -----------------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccc
Confidence                             00112345567999999999988874 89999999986 443322   21          112


Q ss_pred             CceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325          197 DAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE  273 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  273 (368)
                      ....++.++|++ ++++ .-....|.+|++......... ............+.+.|+|+++++++.. .++.|.++++.
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            456789999998 4444 344568999999765321111 1111224456688999999999876654 56789999887


Q ss_pred             --Ccccc-ceee-------ecc-ceEEEEEEeCCCEEEEee-CCCeEEEEecCC--CceeeeEeeeccccCeeEEEEecC
Q 047325          274 --KQLSH-GGVL-------KGH-KLAVLCLAAAGKLVFSGS-ADKTICVWRRDG--AIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       274 --~~~~~-~~~~-------~~~-~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                        ++... ....       .+. ...-+.++||+++|+++. .++.|.+|+++.  +....+..+.......+.++++|+
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence              22111 0111       111 234477899999888765 467899999943  344555555544556899999999


Q ss_pred             CeeeecCC
Q 047325          340 RDSSSSTS  347 (368)
Q Consensus       340 ~~~~~~~~  347 (368)
                      |++++.++
T Consensus       303 g~~l~Va~  310 (345)
T PF10282_consen  303 GRYLYVAN  310 (345)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99876553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.45  E-value=1.2e-10  Score=99.86  Aligned_cols=289  Identities=10%  Similarity=0.057  Sum_probs=152.9

Q ss_pred             EecCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccce-
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK-  127 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-  127 (368)
                      ...++.+++++.+|.|..+|..+...  .+.............++.++.++.+|.+..+|.++++.............. 
T Consensus        62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            34466777777777777777653322  222222222334455777777777888888887777765554443211100 


Q ss_pred             ----eeeeccCCCCceeEecccc-eeeeeec-CCCE------eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325          128 ----DIFKSSIKPSNYIEVRRHR-TALWIRH-SDAV------SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       128 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                          ...........+..+.... ...|... ....      .+...  .+..++.+..++.+..+|+++|+.+......
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence                0000001111111111100 0111100 0000      00111  1246778888899999999999876543311


Q ss_pred             CC----c---eEEEEe---CCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325          196 DD----A---VNSVVS---SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG  265 (368)
Q Consensus       196 ~~----~---v~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  265 (368)
                      ..    .   ...+.-   ..++.+++++.+|.++.+|.+++....      ... . .......  ..+..++.++.+|
T Consensus       220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W------~~~-~-~~~~~p~--~~~~~vyv~~~~G  289 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW------KRD-A-SSYQGPA--VDDNRLYVTDADG  289 (377)
T ss_pred             cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE------eec-c-CCccCce--EeCCEEEEECCCC
Confidence            00    0   001111   124578888889999999998663211      111 1 1111122  2456788888999


Q ss_pred             cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCeeee
Q 047325          266 LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSS  344 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~  344 (368)
                      .++.+|..+++.+.................+..|++++.||.|+++|..++  +.+..+..+..++.. ..+.. +.   
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~sp~~~~-~~---  363 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIASPPVVVG-DG---  363 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCccccCCEEEC-CE---
Confidence            999999988765532211111111222235779999999999999988776  666666655544332 23333 33   


Q ss_pred             cCCcceEEEEEeeCCcccccccC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                |+.++.||.|..|
T Consensus       364 ----------l~v~~~dG~l~~~  376 (377)
T TIGR03300       364 ----------LLVQTRDGDLYAF  376 (377)
T ss_pred             ----------EEEEeCCceEEEe
Confidence                      5566677776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=6.6e-12  Score=104.61  Aligned_cols=184  Identities=13%  Similarity=0.242  Sum_probs=141.5

Q ss_pred             EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325           94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS  173 (368)
Q Consensus        94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  173 (368)
                      -|+.++....|.-.+++.+..+..+..                                ....++++..++-..+|++|+
T Consensus       147 Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------------------~~~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  147 DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------------------DSGELNVVSINEEHGLLACGT  194 (703)
T ss_pred             cEEEeecCcceEEEEcccccccccccc--------------------------------ccccceeeeecCccceEEecc
Confidence            344555555777788888875444332                                457899999999888999999


Q ss_pred             CCCcEEEEEccCCeEEEEeec------CC-----CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          174 WDRTFKVWRISDSKCLESVSA------HD-----DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                      .+|.|..||.+....+..+..      |.     ..|+++.|..+| .+++|+.+|.+.|||++....     ....-.+
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~  269 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHG  269 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eeecccC
Confidence            999999999998776665542      22     249999999999 999999999999999997643     4444556


Q ss_pred             ccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          242 QECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       242 ~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ..-+|..+.|.+.  ++.+++. ....++|||-.+++.....-..+...-.|+-|++.+++++-.++.+..|-+..
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             CccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            6778999999775  4556554 45689999999887775555556666688889999999999999888886643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.2e-10  Score=101.58  Aligned_cols=230  Identities=10%  Similarity=0.020  Sum_probs=138.3

Q ss_pred             cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325           65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN  138 (368)
Q Consensus        65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (368)
                      .|.++|.... ...+..+...+....|+  |+.|+..+.+   ..|.+|++.+++......                   
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-------------------  240 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-------------------  240 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence            3666776532 34455667778888887  7788766543   368888988765322111                   


Q ss_pred             eeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-E
Q 047325          139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-G  213 (368)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~  213 (368)
                                    ....+....|+|||+.|+. ...+|  .|.++|+.+++.. .+..+........|+|++ .++. .
T Consensus       241 --------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s  305 (430)
T PRK00178        241 --------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS  305 (430)
T ss_pred             --------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence                          2223446899999998764 44444  6888899887654 344455556677899998 4544 4


Q ss_pred             cCCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-C--cEEEEeCCCccccceeeeccceE
Q 047325          214 SADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-G--LVNFWEREKQLSHGGVLKGHKLA  288 (368)
Q Consensus       214 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~  288 (368)
                      ..++  .|+++|+..+..       ..+...........|+|+++.|+....+ +  .|.++|+.++.... ........
T Consensus       306 ~~~g~~~iy~~d~~~g~~-------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~  377 (430)
T PRK00178        306 DRGGKPQIYKVNVNGGRA-------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDE  377 (430)
T ss_pred             CCCCCceEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCC
Confidence            3444  566677654421       1111111223456899999998876643 3  57888988654321 11111222


Q ss_pred             EEEEEeCCCEEEEeeCC-C--eEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          289 VLCLAAAGKLVFSGSAD-K--TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      -..++|||+.++..+.+ |  .|.+.+++..   ....+..+.+.+...+|+|-
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~---~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR---VRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCC---ceEECcCCCCCcCCCccCCC
Confidence            34789999988776643 3  4666666543   22334444556677777763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1e-12  Score=109.18  Aligned_cols=282  Identities=13%  Similarity=0.195  Sum_probs=176.0

Q ss_pred             eeeccCcCCcEEEEEe-c-CCEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEeCCEEEEEeCCCeEE
Q 047325           37 IGSLVREEGHIYSLAA-S-KDLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVISGEKIFTGHQDGKIR  105 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~-~-~~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~  105 (368)
                      +..+.||...|..++- + .+-+++++.|++|++|.+..+         ..+++.|..+|.++.|-.+.-..++.||.|.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            5678899999998864 3 458999999999999986522         3357899999999999844434456699999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEcc
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRIS  184 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~  184 (368)
                      +||.--+...........                           .+....|.|+.- -+...++++ +...+|+++|.+
T Consensus       808 lWDPFigr~Laq~~dapk---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaR  859 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPK---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDAR  859 (1034)
T ss_pred             eecccccchhHhhhcCcc---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeeecc
Confidence            999876654332221110                           001223344321 133444444 778999999999


Q ss_pred             CCeEEEEee-----cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          185 DSKCLESVS-----AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       185 ~~~~~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ..+-...++     +.+..+.+++..+.| +++++-.+|.|.+.|.|++..      +..+...+.....++ .|..+.|
T Consensus       860 sce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v------INswrpmecdllqla-apsdq~L  932 (1034)
T KOG4190|consen  860 SCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV------INSWRPMECDLLQLA-APSDQAL  932 (1034)
T ss_pred             cccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce------eccCCcccchhhhhc-CchhHHH
Confidence            887665554     345678999999998 999999999999999998732      333333333333333 3455667


Q ss_pred             EEecCCCcEEE-EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--eeeeEee--eccccCeeE
Q 047325          259 YCGSSDGLVNF-WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI--HTCLSVL--TGHTGPVKC  333 (368)
Q Consensus       259 ~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~--~~h~~~v~~  333 (368)
                      +....|..+.+ |..-.+.... ..+..+.+..-+..-|.-|+++...+.+.+|.-....  ...+..+  ....+..++
T Consensus       933 ~~saldHslaVnWhaldgimh~-q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTa 1011 (1034)
T KOG4190|consen  933 AQSALDHSLAVNWHALDGIMHL-QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTA 1011 (1034)
T ss_pred             HhhcccceeEeeehhcCCeeee-ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccce
Confidence            77777777877 7654443321 1112222222223346667777767777887421110  0111111  234456788


Q ss_pred             EEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      ++.-|-..            -+..|.+-|.|++
T Consensus      1012 la~LPLN~------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1012 LAPLPLNC------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred             eeeccccc------------hhhccCCCCceee
Confidence            88888776            3455666666654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=1.4e-12  Score=111.73  Aligned_cols=283  Identities=14%  Similarity=0.171  Sum_probs=183.5

Q ss_pred             EEEecCCEEEEccCCCcEEEEcCCcceec--ccCC--CCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           49 SLAASKDLLYTGSDSKNIRVWKNLKEFCG--FKAS--SGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        49 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~--~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      ++...|+-+|.++.-|.. +-|+......  +..|  .-.|-.+.|+    -.+-++......-.+|++......     
T Consensus        31 si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~-----  104 (1081)
T KOG0309|consen   31 SINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN-----  104 (1081)
T ss_pred             eeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc-----
Confidence            344557778888887744 5565533221  1112  2235555665    234444444455568887644311     


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCe-EEEEeecCCCc
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSK-CLESVSAHDDA  198 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~  198 (368)
                                              .-...+.||...|+.+.|+|+. ..+++++.|..++.||+++.. ++.....-...
T Consensus       105 ------------------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~  160 (1081)
T KOG0309|consen  105 ------------------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA  160 (1081)
T ss_pred             ------------------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence                                    1123456799999999999954 588999999999999998854 45555544555


Q ss_pred             eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc
Q 047325          199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL  276 (368)
Q Consensus       199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  276 (368)
                      ...++|+-.. .+.+.+..+.|++||.+.+..     ++..+++|...+..++|.. ....+.+.+.||+|+.||..+..
T Consensus       161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             CceeeecccCcchhhhccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            6778888655 667777788999999997754     5667777888899998875 33468889999999999987543


Q ss_pred             ccceeeeccceEE--EEEEeC--CCEEEEeeCCCeEEEEecCCC--------ceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          277 SHGGVLKGHKLAV--LCLAAA--GKLVFSGSADKTICVWRRDGA--------IHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       277 ~~~~~~~~~~~~~--~~~~~~--~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      ...........++  -++-|-  |.++.---.+..+.+++-+..        ...++.++.||.+.|....|-..+.  .
T Consensus       236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e--~  313 (1081)
T KOG0309|consen  236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE--C  313 (1081)
T ss_pred             cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc--c
Confidence            3222222222222  233332  222222222234444433211        2367899999999999888876554  3


Q ss_pred             cCCcceEEEEEeeCCcccccccCC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      .++.+.+.++|+|=|.|..+|+|.
T Consensus       314 ~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  314 DGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             cCCCCccceeEEEeecCCceEeee
Confidence            345667788999999999999993

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=6.2e-10  Score=92.85  Aligned_cols=303  Identities=11%  Similarity=0.106  Sum_probs=169.6

Q ss_pred             EEEEEecCC-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEE-----eCC-----CeEEEEeecCCC
Q 047325           47 IYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTG-----HQD-----GKIRVWKISPKN  113 (368)
Q Consensus        47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-----~~d-----g~i~vw~~~~~~  113 (368)
                      ....+++++ .+..-+.+..++|++.......+......+.++.|+  +.+|.+=     ..+     -.+.+|+++++.
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~  116 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV  116 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence            344445433 444455567899998765433232223378888887  6676542     222     347799998844


Q ss_pred             ccccccCCccc----cc---eeee-eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEE-----EeCCCcE
Q 047325          114 QSVHKRAGTLP----TL---KDIF-KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYT-----ASWDRTF  178 (368)
Q Consensus       114 ~~~~~~~~~~~----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~i  178 (368)
                      ....+......    ..   ..+. ........+.+........-.-|...|+.+.++|.+.  .+++     .+.-+.+
T Consensus       117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v  196 (566)
T KOG2315|consen  117 QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV  196 (566)
T ss_pred             ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence            32222211111    00   0000 0000111112222222222233678899999998632  3333     2445679


Q ss_pred             EEEEccCCeEEEEe---ecCCCceEEEEeCCCC--eEEEEc--CC---------CeEEEEEcCCCCCCcccccceeeccc
Q 047325          179 KVWRISDSKCLESV---SAHDDAVNSVVSSSEG--LIFTGS--AD---------GTVKVWKREQHGKGTKHSLAQTLLKQ  242 (368)
Q Consensus       179 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~l~~~~--~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~  242 (368)
                      +||.......-..+   .-....=..+.|++.|  +|+.++  -|         .++++.+++..       ....-...
T Consensus       197 ri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-------s~~V~L~k  269 (566)
T KOG2315|consen  197 RIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-------SVSVPLLK  269 (566)
T ss_pred             EEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-------eEEEecCC
Confidence            99987632211111   1112222356788776  333332  23         35777777622       12223345


Q ss_pred             cccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC---CCeEEEEecCCCc
Q 047325          243 ECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA---DKTICVWRRDGAI  317 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~  317 (368)
                      .++|.++.|+|+++.+++  |-.-..+.|||++....  ..+.......+-++|.|++|+.++-   -|.|-|||+.+. 
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-
Confidence            789999999999986654  56677899999986432  2333334444668899999888775   478999999874 


Q ss_pred             eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                       +++..+..-  .-+-..|+|||+++.++.-..++ .     .|..++|||
T Consensus       347 -K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRl-r-----vdNg~Kiwh  388 (566)
T KOG2315|consen  347 -KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRL-R-----VDNGIKIWH  388 (566)
T ss_pred             -hhccccccC--CceEEEEcCCCcEEEEEeccccE-E-----ecCCeEEEE
Confidence             666666533  34567999999987766543332 1     266677776

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.40  E-value=1.3e-11  Score=92.81  Aligned_cols=237  Identities=16%  Similarity=0.283  Sum_probs=143.9

Q ss_pred             ccCcCC-cEEEEEecCC-EEEEccCCCcEEEEcCCcc--------------eeccc--CCCCCeeEEEEeCCEEEEEeCC
Q 047325           40 LVREEG-HIYSLAASKD-LLYTGSDSKNIRVWKNLKE--------------FCGFK--ASSGLVKAIVISGEKIFTGHQD  101 (368)
Q Consensus        40 ~~~h~~-~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--------------~~~~~--~~~~~v~~~~~~~~~l~s~~~d  101 (368)
                      ..+|.+ .|+.+.+.-+ .|+++..++.+......+.              ...+.  ...++...+...++.++++..|
T Consensus        31 i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d  110 (319)
T KOG4714|consen   31 IMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD  110 (319)
T ss_pred             cccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCC
Confidence            344443 1555666544 7888888877766653221              11222  2233444444458899999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CC
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DR  176 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~  176 (368)
                      |.+.+.+.+....... +....                             |.+. .+.++...++.+.++..     -+
T Consensus       111 g~~~v~s~~~~~~~~~-~i~~~-----------------------------~~~~-as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen  111 GSLAVFSTDKDLALMS-RIPSI-----------------------------HSGS-ASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ceEEEEechHHHhhhh-hcccc-----------------------------cccc-cccceeecccEEecCCcceEeecc
Confidence            9999999876221111 11000                             1111 11222233444444321     23


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-  253 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  253 (368)
                      ..++|+++..+.+..-......|.+++-+|..  .+++|+.||.+-+||.|....     +...+..|+.++..+-|+| 
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCC
Confidence            45666665433222222223448899988876  889999999999999997633     5667788999999999999 


Q ss_pred             CCCEEEEecCCCcEEEEeCCCccccc-----------------------eeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSHG-----------------------GVLKGHKLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      ++..|+++++||.+..||..+...-.                       ..+......|.+|..-|..|++|+.-+.|++
T Consensus       235 ~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl  314 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYL  314 (319)
T ss_pred             CchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEE
Confidence            67799999999999999976321100                       0011112223444455888999998888888


Q ss_pred             Ee
Q 047325          311 WR  312 (368)
Q Consensus       311 w~  312 (368)
                      ++
T Consensus       315 ~~  316 (319)
T KOG4714|consen  315 TR  316 (319)
T ss_pred             ec
Confidence            74

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.39  E-value=3e-10  Score=87.17  Aligned_cols=181  Identities=18%  Similarity=0.123  Sum_probs=127.1

Q ss_pred             CCEeEEEEcC---CCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCC------ceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          155 DAVSCMSLDQ---DCG-LLYTASWDRTFKVWRISDSKCLESVSAHDD------AVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       155 ~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      ..+..+.|..   ++. .++-+..+|.|.++..........+++-..      ...++.|++.+ .++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            4455566643   344 566677789999998766555555543221      24567888888 899999999999665


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEEe---CCCE
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLAA---AGKL  298 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~---~~~~  298 (368)
                      ....    .....+..+.|+-....+.|+. +.+.+.+|+.|+.+..||++.+. ......+-|...|.++..   .+.+
T Consensus       150 ~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  150 ETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             ccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence            5432    1223457788999999999986 45689999999999999999333 333335568888888874   5679


Q ss_pred             EEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          299 VFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       299 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      |++|+.|-.|++||.++.. +++..-. -.+.|+.+.++|.-.
T Consensus       226 I~TGsYDe~i~~~DtRnm~-kPl~~~~-v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMG-KPLFKAK-VGGGVWRIKHHPEIF  266 (339)
T ss_pred             EEEeccccceeeeehhccc-CccccCc-cccceEEEEecchhh
Confidence            9999999999999987542 3443322 347788888887643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5.2e-11  Score=93.26  Aligned_cols=239  Identities=20%  Similarity=0.249  Sum_probs=167.4

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc-cccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ-SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ..+++|...+++...-  .+-+++.+.|.+++||--.+..+ ......                               .
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------------------------------~   66 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------------------------------Y   66 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-------------------------------h
Confidence            3567777777776554  67899999999999996544322 111111                               1


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc----CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS----DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      ...+++++.+.+....|++|-..|++.-+.+.    .....+....|...+..+.|+... .+++.+.|..+.-.-.+.+
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            56788999999999999999999999888653    344566667899999999888766 8888888887765555443


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-CccccceeeeccceEEEEEEeC--CCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~  304 (368)
                      .........       ...+++.+.-.  +...|...|.|.+-.+. +...+...+.+|...+.+++++  ..+|++|..
T Consensus       147 ~~lg~Y~~~-------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~  217 (404)
T KOG1409|consen  147 NRLGGYNFE-------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS  217 (404)
T ss_pred             CcccceEee-------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence            221111110       01111111111  55566677777666554 3344556788999999888876  679999999


Q ss_pred             CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |..+.+||+.... ....++.+|...|..+...+--+            .+.+++.||.|-+|
T Consensus       218 d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~------------~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  218 DHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTR------------QLISCGEDGGIVVW  267 (404)
T ss_pred             cCceEEEeccCCc-ceeeeeccchhhhhhhhhhhhhe------------eeeeccCCCeEEEE
Confidence            9999999997664 34567789999999999888877            67777777777766

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=1.9e-10  Score=96.35  Aligned_cols=183  Identities=17%  Similarity=0.267  Sum_probs=143.6

Q ss_pred             CCEEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe----------------------CCEEEEEeCCCeEEE
Q 047325           54 KDLLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS----------------------GEKIFTGHQDGKIRV  106 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~----------------------~~~l~s~~~dg~i~v  106 (368)
                      .+++|....||.+|+||+...     ......-.+..++..|.                      ...++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            348999999999999997632     22222234455555552                      125777888999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      |++..++.......+                              .|.+.|+++.++.+-..|.+++.|+.+..|+....
T Consensus        85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            999888765544432                              29999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-----CCEEEE
Q 047325          187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-----RSIVYC  260 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~  260 (368)
                      +.++..+.....+.+++.+||+ .+++++  +.|++||+++.      ..+..+.+|.++|+++.|.-+     |.++++
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceeee
Confidence            9999999999999999999999 777766  68999999876      468899999999999999876     566555


Q ss_pred             e-cCCCcEEEEeCCC
Q 047325          261 G-SSDGLVNFWEREK  274 (368)
Q Consensus       261 ~-~~dg~i~i~d~~~  274 (368)
                      + ..+..+.+|-.+.
T Consensus       207 sa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  207 SAAAERGITVWVVEK  221 (541)
T ss_pred             ccccccceeEEEEEc
Confidence            3 4455577776553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.7e-10  Score=99.07  Aligned_cols=229  Identities=13%  Similarity=0.030  Sum_probs=133.6

Q ss_pred             cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeC-CC--eEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325           65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQ-DG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN  138 (368)
Q Consensus        65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (368)
                      .|.++|.... ...+..+...+.+..|+  |+.|+..+. ++  .|.+||+.+++......                   
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-------------------  259 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-------------------  259 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence            5666676532 33445566678878887  777776543 33  58888887765321111                   


Q ss_pred             eeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EE
Q 047325          139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TG  213 (368)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~  213 (368)
                                    .........|+||++.|+. .+.++.  |.++|+.+++.. .+..+........|+|++ .++ +.
T Consensus       260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s  324 (448)
T PRK04792        260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTS  324 (448)
T ss_pred             --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE
Confidence                          1122346789999997765 455664  778898877654 344455556778999999 444 44


Q ss_pred             cCCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceE
Q 047325          214 SADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLA  288 (368)
Q Consensus       214 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~  288 (368)
                      ..++  .|.++|+..+.       ...+..........+|+|+|++|+..+. ++  .|.++|+.++.... ........
T Consensus       325 ~~~g~~~Iy~~dl~~g~-------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~  396 (448)
T PRK04792        325 ERGGKPQIYRVNLASGK-------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDE  396 (448)
T ss_pred             CCCCCceEEEEECCCCC-------EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCC
Confidence            3444  46666665432       1111111122345689999998877654 33  45567777654321 11111112


Q ss_pred             EEEEEeCCCEEEEeeC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          289 VLCLAAAGKLVFSGSA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      -..++||++.|+..+. +|.  +++++.+..   ....+..+.+.+...+|+|
T Consensus       397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~---~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR---FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCC---ceEECcCCCCCcCCCccCC
Confidence            2468899998776554 333  666666443   3444555556677788877

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=2.1e-09  Score=90.55  Aligned_cols=266  Identities=13%  Similarity=0.128  Sum_probs=150.2

Q ss_pred             cCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe-CCCe
Q 047325           31 LPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH-QDGK  103 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~  103 (368)
                      ....+.+..+....+.-..+.++  ++++++++.||.|.++|+.+.  +...+. ......++++  |++++++. .++.
T Consensus        23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~  101 (369)
T PF02239_consen   23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGT  101 (369)
T ss_dssp             TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred             CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCc
Confidence            45567777777654443345565  458888889999999998754  333333 2234567776  88888765 6899


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-CcEEEEE
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-RTFKVWR  182 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd  182 (368)
                      +.++|.++.+..........+..                         +....+..+..+|....++..-.| +.|.+.|
T Consensus       102 v~v~D~~tle~v~~I~~~~~~~~-------------------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen  102 VSVIDAETLEPVKTIPTGGMPVD-------------------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             EEEEETTT--EEEEEE--EE-TT-------------------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             eeEeccccccceeeccccccccc-------------------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            99999988775444332211000                         023467788888888866665554 7888888


Q ss_pred             ccCCeEEE-EeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCC-----------------------------
Q 047325          183 ISDSKCLE-SVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKG-----------------------------  230 (368)
Q Consensus       183 ~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~-----------------------------  230 (368)
                      ....+.+. .............|.|++ ++ ++...+..|-++|.......                             
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence            77654332 222244567788999998 44 44555668888877654210                             


Q ss_pred             --------------------cccccceeeccccccEEEEEEcCCCCEEEEe----cCCCcEEEEeCCCccccceeeeccc
Q 047325          231 --------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCG----SSDGLVNFWEREKQLSHGGVLKGHK  286 (368)
Q Consensus       231 --------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~  286 (368)
                                          ...+....+.....+ .-+..+|+++++++.    ...+.|.++|.++.+..........
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~  315 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG  315 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC
Confidence                                000011111112223 456779999999988    4558999999998754433222222


Q ss_pred             --eEEEEEEeCCCEEEEeeC--CCeEEEEecCCCceeeeEeee
Q 047325          287 --LAVLCLAAAGKLVFSGSA--DKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       287 --~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~  325 (368)
                        ..-..++++|+.+..+..  ++.|.+||..+.  +.+.++.
T Consensus       316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl--~~~~~i~  356 (369)
T PF02239_consen  316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL--KEKKRIP  356 (369)
T ss_dssp             --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT--EEEEEEE
T ss_pred             CcEeccEECCCCCEEEEEEecCCCEEEEEECCCc--EEEEEEE
Confidence              223567778987665544  347999988776  5555554

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=9.8e-10  Score=91.72  Aligned_cols=229  Identities=15%  Similarity=0.177  Sum_probs=151.2

Q ss_pred             EEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-C---CEEEE-----EeCCCeEEEEeecCCCccc
Q 047325           48 YSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-G---EKIFT-----GHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        48 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~---~~l~s-----~~~dg~i~vw~~~~~~~~~  116 (368)
                      ++..|+.+ .|+.=-..+.+.+|++..- ....+.|...|+.+.++ +   ..+++     .+.-+.+++|.........
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~  208 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ  208 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence            56777755 4444445678999987752 22345577788888887 3   23332     4556679999876332211


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEe-----------CCCcEEEEEcc
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTAS-----------WDRTFKVWRIS  184 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-----------~d~~i~iwd~~  184 (368)
                      ......      +                       ....=..+.|++-+. +|+.++           .+.++++.++.
T Consensus       209 ~~a~ks------F-----------------------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~  259 (566)
T KOG2315|consen  209 PVANKS------F-----------------------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ  259 (566)
T ss_pred             hhhhcc------c-----------------------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence            111000      0                       111122455665444 222221           13478888887


Q ss_pred             CCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          185 DSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ...+...+. ..++|.++.|++++   -++-|..-..+.|||++..         ..+.-.+++-+++-|+|.|++++.+
T Consensus       260 g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df~egpRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  260 GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDFPEGPRNTAFFNPHGNIILLA  329 (566)
T ss_pred             CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeCCCCCccceEECCCCCEEEEe
Confidence            444444443 57899999999999   4455666789999999843         3344456778899999999998876


Q ss_pred             cC---CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC------CCeEEEEecCCC
Q 047325          262 SS---DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA------DKTICVWRRDGA  316 (368)
Q Consensus       262 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~  316 (368)
                      +-   -|.+.+||..+.+.+ ..+......+..++|||++++|+..      |+.++||++...
T Consensus       330 GFGNL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ecCCCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            64   478999999985544 5666777888999999999999875      788999998653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.36  E-value=1.8e-08  Score=84.96  Aligned_cols=270  Identities=13%  Similarity=0.194  Sum_probs=153.2

Q ss_pred             EEEEEec--CCEEEEccC----CCcEEEEcCCcc------eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecC
Q 047325           47 IYSLAAS--KDLLYTGSD----SKNIRVWKNLKE------FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISP  111 (368)
Q Consensus        47 i~~~~~~--~~~l~s~~~----dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~  111 (368)
                      ..-|+++  +++|++...    +|.|..|++...      +............++++  +++|+++. .+|.|.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            3445554  446666554    578888876532      22222233444567775  77888876 489999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCe--E
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSK--C  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~  188 (368)
                      ...........  ...   .....+             -........++.++|+++++++... ...|.+|++....  .
T Consensus       119 ~g~l~~~~~~~--~~~---g~g~~~-------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l  180 (345)
T PF10282_consen  119 DGSLGEVVQTV--RHE---GSGPNP-------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL  180 (345)
T ss_dssp             TSEEEEEEEEE--ESE---EEESST-------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred             Ccccceeeeec--ccC---CCCCcc-------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence            53221110000  000   000000             0002345678999999998888753 3479999997654  2


Q ss_pred             --EEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec------cccccEEEEEEcCCCCE
Q 047325          189 --LESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL------KQECAVTALVVSSSRSI  257 (368)
Q Consensus       189 --~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~  257 (368)
                        ...+. ......+.+.|+|++  ..++.-.++.|.++++.....  .........      ........++++|++++
T Consensus       181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence              22222 234567899999998  445556688999999983221  111111111      11225788999999998


Q ss_pred             EEEec-CCCcEEEEeCCC--cccc-ceee--eccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeee-cccc
Q 047325          258 VYCGS-SDGLVNFWEREK--QLSH-GGVL--KGHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLT-GHTG  329 (368)
Q Consensus       258 l~~~~-~dg~i~i~d~~~--~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-~h~~  329 (368)
                      |+++. ..+.|.+|++..  +... ....  .+....-+.+++++++|+++. .++.|.+|+++...+.+...-. ..-.
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~  338 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIP  338 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCC
Confidence            87765 566899999842  2211 1111  133344577889999998876 5678999988644334333221 2234


Q ss_pred             CeeEEEE
Q 047325          330 PVKCLAV  336 (368)
Q Consensus       330 ~v~~l~~  336 (368)
                      ...||.|
T Consensus       339 ~p~ci~f  345 (345)
T PF10282_consen  339 SPVCIVF  345 (345)
T ss_dssp             SEEEEEE
T ss_pred             CCEEEeC
Confidence            4566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.7e-09  Score=93.44  Aligned_cols=237  Identities=9%  Similarity=-0.022  Sum_probs=132.3

Q ss_pred             cEEEEcCCc-ceecccCCCCCeeEEEEe--CCE---EEEEeCCC--eEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325           65 NIRVWKNLK-EFCGFKASSGLVKAIVIS--GEK---IFTGHQDG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP  136 (368)
Q Consensus        65 ~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~---l~s~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (368)
                      .|.+.|... ....+......+..-.|+  |+.   +++...+|  .|.+.++.+++......                 
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-----------------  228 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-----------------  228 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence            565666542 233344444555566777  443   33555554  46666776664322111                 


Q ss_pred             CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC
Q 047325          137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~  208 (368)
                                      ........+|+|||+.|+..+.     +-.+.+|++..+   +................|+|||
T Consensus       229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence                            2233456799999998876653     223445777652   3333333333344677999999


Q ss_pred             -eEEEE-cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeee
Q 047325          209 -LIFTG-SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLK  283 (368)
Q Consensus       209 -~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~  283 (368)
                       .|+.. ..+|...+|.+.......   ....+......+....|+|||+.|+..+.+   ..|.+||+.++........
T Consensus       293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~  369 (428)
T PRK01029        293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS  369 (428)
T ss_pred             CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence             55544 456655555443211000   122233334456788999999988876543   3689999987654321111


Q ss_pred             ccceEEEEEEeCCCEEEEeeC---CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          284 GHKLAVLCLAAAGKLVFSGSA---DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      ........++|||+.|+....   +..|+++|++.+....+   ....+.+...+|+|-.
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L---t~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI---VIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCcccCceecCCC
Confidence            122334678889987764432   35688888877643333   2344456677888753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.1e-11  Score=116.02  Aligned_cols=187  Identities=21%  Similarity=0.349  Sum_probs=137.0

Q ss_pred             CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecc-cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325           42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGF-KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      .|-..|.++.-++.  +.+||+.||.|++|....  .+..+ ..-...|+.+.|+  |+.+..+..||.+.+|...... 
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc-
Confidence            34455777766654  888999999999998653  33333 2334789999998  8999999999999999987221 


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe---CCCcEEEEEccCC---eE
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---WDRTFKVWRISDS---KC  188 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~---~~  188 (368)
                                                      ...+..|.....+..|-.  ..+++++   .++.+.+||..-.   ..
T Consensus      2285 --------------------------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2285 --------------------------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             --------------------------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence                                            112233888888888875  5666664   4679999996432   22


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      +.  ..|.+.++++++.|.. .|++|+.+|.|++||++..+      ....+..         +. ...++++|+..|.+
T Consensus      2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq------l~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ------LRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred             ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH------HHHHhhh---------hh-hhheeeccCcccce
Confidence            33  7899999999999998 99999999999999998642      2222222         33 56789999999999


Q ss_pred             EEEeCCCcccccee
Q 047325          268 NFWEREKQLSHGGV  281 (368)
Q Consensus       268 ~i~d~~~~~~~~~~  281 (368)
                      +||++.....+...
T Consensus      2393 kIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTF 2406 (2439)
T ss_pred             EEEEccccchhhcC
Confidence            99999876444333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=3.7e-09  Score=90.74  Aligned_cols=223  Identities=14%  Similarity=0.109  Sum_probs=122.2

Q ss_pred             EEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcccccee-----eeeccCCCCceeEecccc-eeeeeec-CCCEeEE
Q 047325           88 IVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKD-----IFKSSIKPSNYIEVRRHR-TALWIRH-SDAVSCM  160 (368)
Q Consensus        88 ~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~~  160 (368)
                      ....++.+++++.+|.+..+|..+++...............     ..........+..+.... ...|... ...+.+.
T Consensus        61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  140 (377)
T TIGR03300        61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP  140 (377)
T ss_pred             eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence            34558899999999999999999888876655443211100     000011111111111100 0111111 1111111


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE-----EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-----SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      -.. .+..++.++.++.|..+|.++|+.+-.++.......     +... .++.++.+..++.+..+|.+++........
T Consensus       141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence            111 245677788899999999999998877654332211     1111 135778888899999999887643111110


Q ss_pred             ceeecccc--ccEEEEEEcC--CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEE
Q 047325          236 AQTLLKQE--CAVTALVVSS--SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVW  311 (368)
Q Consensus       236 ~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  311 (368)
                      .. ..+..  .....+.-+|  .+..++.++.+|.++.+|.++++.......  . .......++..++.++.||.++.+
T Consensus       219 ~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~-~~~~p~~~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       219 AL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--S-SYQGPAVDDNRLYVTDADGVVVAL  294 (377)
T ss_pred             cc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--C-CccCceEeCCEEEEECCCCeEEEE
Confidence            00 00000  0000011111  345778888899999999988765532221  1 122333467888888999999999


Q ss_pred             ecCCC
Q 047325          312 RRDGA  316 (368)
Q Consensus       312 ~~~~~  316 (368)
                      |..++
T Consensus       295 d~~tG  299 (377)
T TIGR03300       295 DRRSG  299 (377)
T ss_pred             ECCCC
Confidence            98776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.1e-11  Score=103.23  Aligned_cols=210  Identities=14%  Similarity=0.268  Sum_probs=142.8

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ++.+.+|...|.+++--  .+.+++++.|++|++|.+....-......                         ....+..
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-------------------------CQfTY~a  782 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-------------------------CQFTYQA  782 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-------------------------eeeEhhh
Confidence            55688999999888654  67899999999999999976532111110                         1223455


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeE-EEEcCCCeEEEEEcCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLI-FTGSADGTVKVWKREQ  226 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l-~~~~~dg~i~i~d~~~  226 (368)
                      |+.+|.++.|..+.++++++  ||.|++||.--++++.....     ..+.|.|+.-.....+ +.++...+|+++|.|.
T Consensus       783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            99999999999988877765  68899999988877664321     1223444432222244 4447789999999987


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEE-EeCCCEEEEeeCC
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL-AAAGKLVFSGSAD  305 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d  305 (368)
                      .+-..+.+. ....+...-+++++..+.|+.++.+-.+|+|.+.|.++++.+. ....-....+.+ .|..+.|+....|
T Consensus       861 ce~~~E~kV-cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqlaapsdq~L~~sald  938 (1034)
T KOG4190|consen  861 CEWTCELKV-CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLAAPSDQALAQSALD  938 (1034)
T ss_pred             ccceeeEEe-ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhcCchhHHHHhhccc
Confidence            643221111 1123445668999999999999999999999999999987553 222222222222 3567777777778


Q ss_pred             CeEEE-Eec
Q 047325          306 KTICV-WRR  313 (368)
Q Consensus       306 g~i~i-w~~  313 (368)
                      .++.+ |..
T Consensus       939 HslaVnWha  947 (1034)
T KOG4190|consen  939 HSLAVNWHA  947 (1034)
T ss_pred             ceeEeeehh
Confidence            88888 754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=3.9e-09  Score=87.28  Aligned_cols=289  Identities=11%  Similarity=0.082  Sum_probs=173.7

Q ss_pred             CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCC---------------eEE
Q 047325           45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDG---------------KIR  105 (368)
Q Consensus        45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---------------~i~  105 (368)
                      -++..++++|.  +|++.... -|.+|.-...-.........|..+.|+  +.||.+=+..+               .+.
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~  111 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF  111 (561)
T ss_pred             cchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence            34566666644  77766654 488998654322222233457777776  77888765444               489


Q ss_pred             EEeecCCCccccccCCcccccee-eeeccCCCCceeEecccceeeee------e------cCCCEeEEEEcCCC--CEEE
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKD-IFKSSIKPSNYIEVRRHRTALWI------R------HSDAVSCMSLDQDC--GLLY  170 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~v~~~~~~~~~--~~l~  170 (368)
                      +||..++.....+.....+.... +............+......+..      .      ....|....|+|.+  ..|+
T Consensus       112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la  191 (561)
T COG5354         112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELA  191 (561)
T ss_pred             EEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEE
Confidence            99999988766655544432221 22222222211111111111111      0      12467788888853  3333


Q ss_pred             E-----EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-E---c-------CCCeEEEEEcCCCCCCccc
Q 047325          171 T-----ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-G---S-------ADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       171 ~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~---~-------~dg~i~i~d~~~~~~~~~~  233 (368)
                      .     .+..+.+++|.+..+..+.+..-....=..+.|.+.| +|++ .   .       ....+++++++..      
T Consensus       192 ~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------  265 (561)
T COG5354         192 YWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------  265 (561)
T ss_pred             EEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc------
Confidence            3     2457789999998777665544333334567888877 2221 1   1       1356788888743      


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---CeE
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---KTI  308 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i  308 (368)
                       .........++|...+|.|.++.+++  |-.+..+.++|++....  ............|+|.+++++.++-|   |.+
T Consensus       266 -~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni  342 (561)
T COG5354         266 -SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNI  342 (561)
T ss_pred             -ccceeccccccceeeeecccCCceeEEecccccceeecccccceE--EecCCcccccccccCcccEEEEecCCccccce
Confidence             12222256789999999998886665  45788899999997622  34444445556789999999987765   679


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      -+||.... ..++..+.+-  ..+-+.|+||++++.++
T Consensus       343 ~i~~~~~r-f~~~~~~~~~--n~s~~~wspd~qF~~~~  377 (561)
T COG5354         343 EIFDPAGR-FKVAGAFNGL--NTSYCDWSPDGQFYDTD  377 (561)
T ss_pred             EEeccCCc-eEEEEEeecC--CceEeeccCCceEEEec
Confidence            99987654 3444344432  24456899999987654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.5e-10  Score=99.43  Aligned_cols=239  Identities=12%  Similarity=0.103  Sum_probs=162.9

Q ss_pred             CCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325           82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus        82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                      .....++.|+  ..+++.|+.||.+++..+.+.........-..+                 ..-.-.+.+.||...|..
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~-----------------snLsmNQtLeGH~~sV~v   76 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA-----------------SNLSMNQTLEGHNASVMV   76 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc-----------------cccchhhhhccCcceEEE
Confidence            3457789998  789999999999999998876533222210000                 001123456789999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe--ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESV--SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      +.|+.+.+.|-+...+|.|.+|-+-.+.-...+  ....+.|.+++|..+| .+.....||.|.+=.++.+.-     .-
T Consensus        77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-----wg  151 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-----WG  151 (1189)
T ss_pred             EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-----cc
Confidence            999999999999999999999998776533222  1245678999999999 899999999998877764311     11


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee----------e--eccceEEEE--------EEeCC
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV----------L--KGHKLAVLC--------LAAAG  296 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~--~~~~~~~~~--------~~~~~  296 (368)
                      +.+.+  .....+.|++|.+.++.+-.+|.+++||.+........          +  .+|...-.+        +-|+.
T Consensus       152 KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr  229 (1189)
T KOG2041|consen  152 KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR  229 (1189)
T ss_pred             hhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence            11111  12346789999999988999999999997643221100          0  112211122        22467


Q ss_pred             CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          297 KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ..|+++-.+|.+.|-.-.+.....+..   ..-.|....|+++|.++|.++
T Consensus       230 P~lavcy~nGr~QiMR~eND~~Pvv~d---tgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  230 PRLAVCYANGRMQIMRSENDPEPVVVD---TGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             CEEEEEEcCceehhhhhcCCCCCeEEe---cccEeecceecCCCcEEEEcc
Confidence            789999999999998655442222221   225688999999999887664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=6.8e-08  Score=76.92  Aligned_cols=252  Identities=12%  Similarity=0.203  Sum_probs=160.7

Q ss_pred             CCcEEEEcCCcc-----eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCC--CccccccCCccccceeee
Q 047325           63 SKNIRVWKNLKE-----FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPK--NQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        63 dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~--~~~~~~~~~~~~~~~~~~  130 (368)
                      +.-|++|++.+.     ....-.+.+..+-|+++  .++|+++-.+   |.|..|.++..  .....-...         
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---------   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---------   85 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------
Confidence            456999987632     22234566777888888  5578887654   77888888753  221111100         


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-CeEEEE--eecCCCc--------
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-SKCLES--VSAHDDA--------  198 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~--~~~~~~~--------  198 (368)
                                         .  ...+-+.+++++++++++++.. .|.|.++-++. |.+...  ...|.+.        
T Consensus        86 -------------------~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~  144 (346)
T COG2706          86 -------------------L--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES  144 (346)
T ss_pred             -------------------c--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence                               0  1223378999999999988864 57899998865 432211  1224333        


Q ss_pred             --eEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325          199 --VNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE  273 (368)
Q Consensus       199 --v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  273 (368)
                        +....+.|++ +|++..- --.|.+|++..+.. ....  ..........+-|.|+|++++..+.+ -+++|.+|...
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~~~--~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TPAD--PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cccc--ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence              7788899999 5555543 34799999985432 1111  11124556788999999999887755 47899999987


Q ss_pred             Cccccceee-----------eccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecC
Q 047325          274 KQLSHGGVL-----------KGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       274 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ........+           ......-+.+++||++|+++.. ...|-+|.++...  ...+.....+....++..|++.
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~  301 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS  301 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence            631111111           1223344778899999998854 3478899886543  3334444445556899999999


Q ss_pred             CeeeecCC
Q 047325          340 RDSSSSTS  347 (368)
Q Consensus       340 ~~~~~~~~  347 (368)
                      +.+|..+.
T Consensus       302 g~~Liaa~  309 (346)
T COG2706         302 GRFLIAAN  309 (346)
T ss_pred             CCEEEEEc
Confidence            99766554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.25  E-value=7.1e-08  Score=79.59  Aligned_cols=258  Identities=10%  Similarity=0.010  Sum_probs=148.2

Q ss_pred             CcEEEEcCCcc--eeccc-CCCCCeeEEEEeCCEEEEEeC----------CCeEEEEeecCCCccccccCCccccceeee
Q 047325           64 KNIRVWKNLKE--FCGFK-ASSGLVKAIVISGEKIFTGHQ----------DGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        64 g~i~iw~~~~~--~~~~~-~~~~~v~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      ++|.+.|..+.  +..+. +..... .+..+++.|+.+..          +..|.+||..+.+.......+..+...   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~---  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL---  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh---
Confidence            78899987643  22222 222222 25555776666554          789999999998876555543221100   


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-C-CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-W-DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (368)
                                            .......++++|||+++++.. . +..|.+.|+.+++.+.++.-.... .-...+++.
T Consensus       103 ----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy~t~e~~  159 (352)
T TIGR02658       103 ----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIFPTANDT  159 (352)
T ss_pred             ----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEEEecCCc
Confidence                                  112334688999999999876 3 689999999999999988753321 112222222


Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-----ccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc----cc
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-----QECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL----SH  278 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~  278 (368)
                       ..+-+.||......+...++.. ......+..     ...+    .|.+ ++++++...+ |.|.+.|+....    ..
T Consensus       160 -~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       160 -FFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             -cEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence             2233445555554444332211 000011111     0111    3455 8888888777 999999964321    11


Q ss_pred             ceee---------eccceEEEEEEeCCCEEEEee----------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          279 GGVL---------KGHKLAVLCLAAAGKLVFSGS----------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       279 ~~~~---------~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ....         ........+++++++.+++..          ..+.|.++|..+.  +.+..+.. ...+..|+++||
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~v-G~~~~~iavS~D  309 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIEL-GHEIDSINVSQD  309 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeC-CCceeeEEECCC
Confidence            1111         111122378888988888743          1246888877665  66666652 458999999999


Q ss_pred             Ce-eeecCC---cceEEEEEeeC
Q 047325          340 RD-SSSSTS---SCAQRWIVYSG  358 (368)
Q Consensus       340 ~~-~~~~~~---~~~~~w~l~sg  358 (368)
                      ++ .+...+   +++.+....++
T Consensus       310 gkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       310 AKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCeEEEEeCCCCCcEEEEECcCC
Confidence            99 555433   33454444444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=2.3e-10  Score=91.55  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE----EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKC----LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ...+..++.+++++++..+....+++......    ....... ..-+++.+..+. ....+..-|.++-+|+-....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            34456677888999998888877887765432    2222222 222344443333 344444444444444332111  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV  310 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i  310 (368)
                        .......+|-..++.++++||+++++++..|..|++-.+...........+|...|..++. ++..|++||.|++|++
T Consensus       142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL  219 (390)
T ss_pred             --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence              1345667899999999999999999999999999998888777777788899999988886 5677899999999999


Q ss_pred             EecCCC
Q 047325          311 WRRDGA  316 (368)
Q Consensus       311 w~~~~~  316 (368)
                      ||+.++
T Consensus       220 Wd~~sg  225 (390)
T KOG3914|consen  220 WDITSG  225 (390)
T ss_pred             EecccC
Confidence            999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=9.2e-08  Score=76.19  Aligned_cols=200  Identities=12%  Similarity=0.143  Sum_probs=132.4

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccC--CeEE--EEeecCCCceEEEEeCCCC-eEEEEcC-CCeEEEEE
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISD--SKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSA-DGTVKVWK  223 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~i~i~d  223 (368)
                      .....+-++++|++++|.++..+   |.|..|.+..  |+..  ........+.+.+++++++ +++++.. .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            56678889999999999888654   6777776654  5432  2222233344789999999 6665554 68999999


Q ss_pred             cCCCCCCcccccceeecccccc----------EEEEEEcCCCCEEEEecC-CCcEEEEeCCCccccc----eeeeccceE
Q 047325          224 REQHGKGTKHSLAQTLLKQECA----------VTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHG----GVLKGHKLA  288 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----~~~~~~~~~  288 (368)
                      ++..+...   .......|.++          +....+.|++++|++.+. ..+|.+|++..+....    ....+...+
T Consensus       118 ~~~dG~l~---~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         118 LQADGSLQ---PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             cccCCccc---cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            97653311   12122233333          788999999999988753 3469999998654322    122334445


Q ss_pred             EEEEEeCCCEEEEeeC-CCeEEEEecCCC--ceeeeEeeec------cccCeeEEEEecCCeeeecCC-cceEEEEE
Q 047325          289 VLCLAAAGKLVFSGSA-DKTICVWRRDGA--IHTCLSVLTG------HTGPVKCLAVEEDRDSSSSTS-SCAQRWIV  355 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~-dg~i~iw~~~~~--~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l  355 (368)
                      -+.|+|++++.+...+ +++|.+|.++..  ..+.++.+..      -.....+|..++||++|-.++ +...+|.+
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            5889999999887776 899999998763  3334443321      123577899999999887665 33444433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=5.1e-10  Score=86.75  Aligned_cols=251  Identities=14%  Similarity=0.201  Sum_probs=149.9

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ....|+++.|.  |.||++|...|+|.++.-+...................+.         .+.      -..-...|.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---------YLk------SleieEKin   89 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---------YLK------SLEIEEKIN   89 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---------hhh------hccHHHHhh
Confidence            45678999998  8999999999999999765443111111110100000000         000      001335678


Q ss_pred             EEEEcCCC--CEEEEEeCCCcEEEEEccCCe------------------------------------------EEEEe-e
Q 047325          159 CMSLDQDC--GLLYTASWDRTFKVWRISDSK------------------------------------------CLESV-S  193 (368)
Q Consensus       159 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~------------------------------------------~~~~~-~  193 (368)
                      .+.|..++  ..++..+.|.+|++|.+....                                          +.+.. .
T Consensus        90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN  169 (460)
T COG5170          90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN  169 (460)
T ss_pred             heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence            88887643  467777889999999875420                                          00001 2


Q ss_pred             cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc--ceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEE
Q 047325          194 AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL--AQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFW  270 (368)
Q Consensus       194 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~  270 (368)
                      .|...|+++.+..+...+..+.|-.|.+|++..........-  .........-|++..|+|. .+.+.-.+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            466678888998888555566788999999876543111000  0111122356888999994 4577778889999999


Q ss_pred             eCCCcccccee-------e--------eccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-----
Q 047325          271 EREKQLSHGGV-------L--------KGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-----  328 (368)
Q Consensus       271 d~~~~~~~~~~-------~--------~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----  328 (368)
                      |++........       .        .+-...+  ..|+++|+++++-+. -+|+|||++.. ..++.++.-|.     
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~-k~pikTi~~h~~l~~~  327 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA-KNPIKTIPMHCDLMDE  327 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc-cCCceeechHHHHHHH
Confidence            99843221110       0        0111122  456678888887654 47999998765 35666665443     


Q ss_pred             -------cCe---eEEEEecCCeeeecCCc
Q 047325          329 -------GPV---KCLAVEEDRDSSSSTSS  348 (368)
Q Consensus       329 -------~~v---~~l~~~~~~~~~~~~~~  348 (368)
                             ..|   -.+.|+.|...+.+++.
T Consensus       328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         328 LNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             HHhhhhccceeeeEEEEecCCccccccccc
Confidence                   223   35778888887666653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.2e-08  Score=86.02  Aligned_cols=178  Identities=10%  Similarity=0.032  Sum_probs=111.2

Q ss_pred             CEeEEEEcCCCCE-EEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCC--CeEEEEEcCCC
Q 047325          156 AVSCMSLDQDCGL-LYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSAD--GTVKVWKREQH  227 (368)
Q Consensus       156 ~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d--g~i~i~d~~~~  227 (368)
                      ......|+||++. ++..+.   +..|.++|+.+++...... ..+......|+||| .+ ++.+.+  ..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678899999984 554443   3569999998887655443 44556677899999 44 444433  56778887654


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      .       ...+...........|+|||+.|+..+. .+  .|++.|+.++........+..  ...++|||+.|+....
T Consensus       268 ~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        268 T-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             c-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEc
Confidence            2       2222223322345579999987776553 33  578888876554322222222  2478999998876654


Q ss_pred             C---------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          305 D---------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       305 d---------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      .         ..|.+.|++++..+.+.   .. .......|+|||+.++...
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT---~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRRLT---AN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEECC---CC-CCcCCeEECCCCCEEEEEE
Confidence            3         26777787766433332   22 2333588999999876554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.19  E-value=1.1e-08  Score=77.76  Aligned_cols=188  Identities=12%  Similarity=0.062  Sum_probs=130.5

Q ss_pred             EEEEccCCCcEEEEcCCcc---eecccCCCCCeeEE---EEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325           56 LLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAI---VISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~---~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      +||.|+.-|...+|...+.   .+....|...|+-+   +-....+..++.|.++++.+++.+......           
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----------  154 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----------  154 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-----------
Confidence            8999999999999987633   22223343333222   222446778899999999998866432211           


Q ss_pred             eeccCCCCceeEecccceeeeeecCC--CEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eE-EE-EeecCCCceEEEEe
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KC-LE-SVSAHDDAVNSVVS  204 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~-~~-~~~~~~~~v~~~~~  204 (368)
                                             |..  .+.+++++++++++++.+....|..|.+... +. +. ........-.+..|
T Consensus       155 -----------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~  211 (344)
T KOG4532|consen  155 -----------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF  211 (344)
T ss_pred             -----------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence                                   333  2788999999999999999999999988643 22 22 22223344567788


Q ss_pred             CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC--EEEEecCCCcEEEEeCCCcccc
Q 047325          205 SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS--IVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       205 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +... .+|++..||++.|||+|........ .......|.+.++.+.|++-|.  +|+..-.-+.+.+.|+++....
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            8877 9999999999999999976542222 2233445889999999998554  5555556678999999976544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=2.1e-08  Score=82.49  Aligned_cols=168  Identities=11%  Similarity=0.070  Sum_probs=124.0

Q ss_pred             cCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCC-eEEEEeecCCCccccccCCccccceee
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDG-KIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      +|++++..|. |...|.+........-+|.+.|.-..+.  ++-++.|..|| .+-|+|.++++.....           
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-----------  398 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-----------  398 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------
Confidence            4667777765 6677777665555555677778777776  67899999999 8999999988632221           


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-  208 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  208 (368)
                                            +.-+.|.++..+++|++++++.....|.+.|+.++.....-+...+-|+.+.|+|++ 
T Consensus       399 ----------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         399 ----------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             ----------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence                                  245678999999999999999988999999999998776666677889999999999 


Q ss_pred             eEEEEcCCC----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          209 LIFTGSADG----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       209 ~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      .++-+--+|    .|+++|+...+       ........+.=.+-+|.|++++|.--
T Consensus       457 ~iAYafP~gy~tq~Iklydm~~~K-------iy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         457 WIAYAFPEGYYTQSIKLYDMDGGK-------IYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             eEEEecCcceeeeeEEEEecCCCe-------EEEecCCcccccCcccCCCCcEEEEE
Confidence            777665554    68999997642       22222233333456788888876543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=1.3e-10  Score=100.07  Aligned_cols=223  Identities=17%  Similarity=0.184  Sum_probs=154.4

Q ss_pred             EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           56 LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      .+++.+... -.+|++...     ...+.+|...|+.+.|+   ...+++++.|-.+..||++..........       
T Consensus        84 wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-------  155 (1081)
T KOG0309|consen   84 WIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-------  155 (1081)
T ss_pred             eEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-------
Confidence            455555444 458987632     23467899999999998   66899999999999999987653222111       


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCceEEEEeCC
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDAVNSVVSSS  206 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~  206 (368)
                                              .-...-..++|+-....+.+.+....|.+||++.| .++..+++|...|+.++|..
T Consensus       156 ------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  156 ------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             ------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence                                    12344567888876566666777789999999875 57888999999999999876


Q ss_pred             CC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC--EEEEecCCCcEEEEe---------CC
Q 047325          207 EG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS--IVYCGSSDGLVNFWE---------RE  273 (368)
Q Consensus       207 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d---------~~  273 (368)
                      --  .+.+.+.|++|+.||......     ..........+|..-++.|-|.  ++.-.-.+..+.+++         ..
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kSt~-----e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~  286 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKSTT-----ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF  286 (1081)
T ss_pred             hhhhhhcccCCCCceeeeccccccc-----ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence            54  899999999999999975533     1222233445666666666443  222222222344443         33


Q ss_pred             CccccceeeeccceEEEEEEeC------------CCEEEEeeCCCeEEEEecCC
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAA------------GKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~dg~i~iw~~~~  315 (368)
                      +...+...+.+|...|..|-+-            .-.|++-+.|..+++|.++.
T Consensus       287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            4455667888999888776541            12699999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.17  E-value=2.3e-07  Score=88.72  Aligned_cols=247  Identities=10%  Similarity=0.057  Sum_probs=144.2

Q ss_pred             CCEEEEccCCCcEEEEcCCcceecccC---------------CCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCcc
Q 047325           54 KDLLYTGSDSKNIRVWKNLKEFCGFKA---------------SSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQS  115 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~~~~~~~---------------~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~  115 (368)
                      ++++++-+.++.|+++|.........+               .-.....++++  ++.|+.+. ..+.|+++|+.++...
T Consensus       580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~  659 (1057)
T PLN02919        580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR  659 (1057)
T ss_pred             CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence            447777788889999997654322111               11234677776  56665554 4577999988765421


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      .....+....       ......     .....    .-..-..++++| ++..+++...++.|++||..++... .+.+
T Consensus       660 tlag~G~~g~-------~~~gg~-----~~~~~----~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        660 TLAGNGTKGS-------DYQGGK-----KGTSQ----VLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             EEeccCcccC-------CCCCCh-----hhhHh----hcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            1110000000       000000     00000    012235789999 5556667677889999999876543 2211


Q ss_pred             C---------------CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc-------ccceeec--------cc
Q 047325          195 H---------------DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH-------SLAQTLL--------KQ  242 (368)
Q Consensus       195 ~---------------~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~--------~~  242 (368)
                      .               -.....++++|++  .+++-..++.|++||++.+......       .....+.        ..
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence            1               1234578999987  4556666899999998754310000       0000000        01


Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec--------------cceEEEEEEeCCCEEEEeeCCCeE
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG--------------HKLAVLCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~dg~i  308 (368)
                      -.....++++++|+++++-..++.|++||..++......-.+              ....-++++++|+++++-+.++.|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            113468899999999999999999999998765433111000              112236778899998988899999


Q ss_pred             EEEecCCCc
Q 047325          309 CVWRRDGAI  317 (368)
Q Consensus       309 ~iw~~~~~~  317 (368)
                      ++||+++..
T Consensus       883 rvid~~~~~  891 (1057)
T PLN02919        883 RYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCc
Confidence            999997753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.3e-08  Score=88.06  Aligned_cols=185  Identities=12%  Similarity=-0.009  Sum_probs=105.6

Q ss_pred             CCCEeEEEEcCCCCEE---EEEeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-CCC----eEEEE
Q 047325          154 SDAVSCMSLDQDCGLL---YTASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-ADG----TVKVW  222 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l---~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg----~i~i~  222 (368)
                      ...+..-.|+|||+.+   ++...+|  .|.+.++.+++.... ....+......|+||| .|+..+ .+|    .+..|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            3445667999998742   2444443  688889887764333 2234445567999999 555433 223    34446


Q ss_pred             EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEE--eCCCccccceeeecc--ceEEEEEEeCCC
Q 047325          223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFW--EREKQLSHGGVLKGH--KLAVLCLAAAGK  297 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~--~~~~~~~~~~~~  297 (368)
                      ++.....+   ................+|+|||+.|+..+ .+|...+|  ++.........+..+  ......++|||+
T Consensus       263 ~~~~g~~g---~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        263 SLETGAIG---KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             ecccCCCC---cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            66542110   11112222223345679999999877655 45654444  443211111122222  223467899999


Q ss_pred             EEEEeeCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          298 LVFSGSAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       298 ~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .|+..+.+   ..|.+||+.++....   +......+....|+|||+.++.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQ---LTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEE---ccCCCCCccceEECCCCCEEEE
Confidence            88866543   468999988764332   2222345678999999987663

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=2e-08  Score=87.50  Aligned_cols=315  Identities=15%  Similarity=0.118  Sum_probs=194.0

Q ss_pred             cccccCCCceeeeccCcCCcEEEEEecC----------C----EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEE
Q 047325           27 FEENLPQNGLIGSLVREEGHIYSLAASK----------D----LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVI   90 (368)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~----------~----~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~   90 (368)
                      +.-+....+.+.++.-|...|+.+.|.+          .    +||++...|.|.+||...  .+..+..|..++..++|
T Consensus        38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW  117 (1062)
T ss_pred             EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence            3445667788899999999999999842          1    688999999999999764  46678889999999998


Q ss_pred             e------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEe-------------------ccc
Q 047325           91 S------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV-------------------RRH  145 (368)
Q Consensus        91 ~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  145 (368)
                      -      .+.|++-....++.+|+..+++............. .+-...+++..+..+                   ..+
T Consensus       118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs-~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk  196 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS-CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK  196 (1062)
T ss_pred             eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee-eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence            5      35788888888999999999987665554332211 000011111111000                   000


Q ss_pred             ceeeeeecCC----------------C---------EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE
Q 047325          146 RTALWIRHSD----------------A---------VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN  200 (368)
Q Consensus       146 ~~~~~~~~~~----------------~---------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  200 (368)
                      ..+.-..|.+                .         ...++|+|.-+.++-......+.++|++-..++....-..+.+.
T Consensus       197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak  276 (1062)
T KOG1912|consen  197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK  276 (1062)
T ss_pred             eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence            1111111111                0         11245677555444445567899999998888888877777777


Q ss_pred             EEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEE-----------EEEcCC-CCEEEEecCC
Q 047325          201 SVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTA-----------LVVSSS-RSIVYCGSSD  264 (368)
Q Consensus       201 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~-----------~~~~~~-~~~l~~~~~d  264 (368)
                      -+.+.|+.   .|++.-.||.+.+|-.+........ +...+ ......+.+           ....|. .+.++.--.+
T Consensus       277 fv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~-~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~  355 (1062)
T KOG1912|consen  277 FVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK-PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSS  355 (1062)
T ss_pred             eeEeccCCCcceEEEEecCCeEEEEEeeccCccccc-cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhc
Confidence            88888876   8999999999999987653221111 00000 000111222           222232 3344444456


Q ss_pred             CcEEEEeCCCccccce------------------------------eeeccceEEEEEE-------------eC------
Q 047325          265 GLVNFWEREKQLSHGG------------------------------VLKGHKLAVLCLA-------------AA------  295 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~------------------------------~~~~~~~~~~~~~-------------~~------  295 (368)
                      |.+.+|.+++++....                              ...+|.....+..             |.      
T Consensus       356 g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~  435 (1062)
T KOG1912|consen  356 GDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAG  435 (1062)
T ss_pred             chhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccce
Confidence            7777787764321110                              0012222221111             11      


Q ss_pred             -CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          296 -GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       296 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                       -.+++.|...|+|.++|+.++  ..-..+..|...|.++.|-....++..
T Consensus       436 ~~pLvAvGT~sGTV~vvdvst~--~v~~~fsvht~~VkgleW~g~sslvSf  484 (1062)
T KOG1912|consen  436 TVPLVAVGTNSGTVDVVDVSTN--AVAASFSVHTSLVKGLEWLGNSSLVSF  484 (1062)
T ss_pred             eeeeEEeecCCceEEEEEecch--hhhhhhcccccceeeeeeccceeEEEe
Confidence             136889999999999999887  566778889999999999888775543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.14  E-value=4e-08  Score=84.69  Aligned_cols=231  Identities=9%  Similarity=0.039  Sum_probs=129.3

Q ss_pred             CCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           54 KDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      ++.++.++.+|.+..+|..+...  ..........+....++.++.+..+|.+..+|.++++............      
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~------  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL------  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc------
Confidence            33556666778888888654322  2222211112223346777778888888888888887655443321000      


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC-------ceEEEEe
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD-------AVNSVVS  204 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~  204 (368)
                                       ...+...++    .  .+..++.++.+|.+..+|..+|+.+-..+....       ....+..
T Consensus       194 -----------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~  250 (394)
T PRK11138        194 -----------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT  250 (394)
T ss_pred             -----------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence                             000011111    1  123566777889999999999887655431110       0111111


Q ss_pred             CC---CCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee
Q 047325          205 SS---EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV  281 (368)
Q Consensus       205 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  281 (368)
                      +|   ++.++.++.+|.+..+|..++.......    .    .....+..  .+..++.++.+|.+..+|.++++.....
T Consensus       251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----Y----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----C----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            22   4577778889999999998764311111    1    11111222  4567778888999999999887654322


Q ss_pred             eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          282 LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      .........+....+.+|+.++.||.|++.|..++  +.+...+
T Consensus       321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG--~~~~~~~  362 (394)
T PRK11138        321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDG--RFVAQQK  362 (394)
T ss_pred             cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEE
Confidence            11100111111224677888999999999988776  5555544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=1.4e-07  Score=90.24  Aligned_cols=198  Identities=10%  Similarity=0.050  Sum_probs=118.7

Q ss_pred             CEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC-----------------CCceEEEEeCC-CC-eEEEEcC
Q 047325          156 AVSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAH-----------------DDAVNSVVSSS-EG-LIFTGSA  215 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~~~~~  215 (368)
                      ....++++++++.|+++.. ++.|+.+|+.++.. .++.+.                 -.....++++| ++ .+++...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            4578999998887666654 56799999877653 333210                 11235789998 45 6667778


Q ss_pred             CCeEEEEEcCCCCCCccc--ccceeec------cccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccccee-----
Q 047325          216 DGTVKVWKREQHGKGTKH--SLAQTLL------KQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGV-----  281 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~--~~~~~~~------~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-----  281 (368)
                      ++.|++||...+......  .......      ..-.....++++|+++ ++++-..++.|++||+.++......     
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            899999998654210000  0000000      0113456799999988 4455566789999998764321000     


Q ss_pred             -------e-----------eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe-----------eeccccCee
Q 047325          282 -------L-----------KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV-----------LTGHTGPVK  332 (368)
Q Consensus       282 -------~-----------~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~~h~~~v~  332 (368)
                             +           ..++ .-++++++|.++++-..+++|++||.++.....+..           ..+.-....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                   0           0011 235677889988888899999999987652221111           011223578


Q ss_pred             EEEEecCCeeeecCCcc--eEEEEE
Q 047325          333 CLAVEEDRDSSSSTSSC--AQRWIV  355 (368)
Q Consensus       333 ~l~~~~~~~~~~~~~~~--~~~w~l  355 (368)
                      .|+++++|+++++..++  +++|.+
T Consensus       863 GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        863 GLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEEC
Confidence            89999999865544333  444443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=5.1e-09  Score=91.33  Aligned_cols=183  Identities=10%  Similarity=0.131  Sum_probs=132.6

Q ss_pred             CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      ...+.|+++++..++-|+.+|.|++.+...... ...                                 .|...     
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~-~~~---------------------------------~~s~~-----   79 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK-TNF---------------------------------DHSSS-----   79 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccc-ccc---------------------------------ccccc-----
Confidence            456778888899999999999999998765421 000                                 03332     


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC------CeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE------GLIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                       ..+|.++++|+.||.|.|-.+-+.+....+. ...++.+++++|+      +.+++|+..| +.++.-+-.+.    ..
T Consensus        80 -~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn----k~  152 (846)
T KOG2066|consen   80 -ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN----KD  152 (846)
T ss_pred             -ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC----cc
Confidence             5579999999999999999998888777665 4578999999998      2899999988 88877654433    11


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE-----EEEEe-CCCEEEEeeCCCeEE
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV-----LCLAA-AGKLVFSGSADKTIC  309 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~l~~~~~dg~i~  309 (368)
                      ........++|.++.|.  |+++|-++.+| |++||+.+++.+......+....     ..+.| +...|+.|-.| +|+
T Consensus       153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~  228 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVK  228 (846)
T ss_pred             ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEE
Confidence            12455677899999994  78999998888 89999988766654444443222     22333 45567777665 688


Q ss_pred             EEecC
Q 047325          310 VWRRD  314 (368)
Q Consensus       310 iw~~~  314 (368)
                      |..+.
T Consensus       229 i~~I~  233 (846)
T KOG2066|consen  229 ICSIK  233 (846)
T ss_pred             EEEEe
Confidence            88776

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=1.6e-09  Score=81.93  Aligned_cols=146  Identities=17%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             EEEEecCCEEEEccCCCcEEEEcCCcceecccC-----CCCCee-EEEEeCCEEEEEeC-----CCeEEEEeecCCCccc
Q 047325           48 YSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKA-----SSGLVK-AIVISGEKIFTGHQ-----DGKIRVWKISPKNQSV  116 (368)
Q Consensus        48 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~~~v~-~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~  116 (368)
                      ..+...++.++++..||.+.+.+.... .....     |.+... ++.-.++.+.++..     -+..+.|+++......
T Consensus        95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen   95 DACTMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             ccccccCCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence            333444568999999999999987752 22111     111111 11111444444331     2334455555433222


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe-EEEEeec
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK-CLESVSA  194 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~  194 (368)
                      ....                                -.+.|.+++-+|. .+.+++|+.||.+-+||.+... +...++.
T Consensus       174 ~~~~--------------------------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a  221 (319)
T KOG4714|consen  174 PSKK--------------------------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA  221 (319)
T ss_pred             cccc--------------------------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH
Confidence            1111                                2244889999995 4577788899999999998764 3456778


Q ss_pred             CCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325          195 HDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       195 ~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~  226 (368)
                      |+.++..+.|+|..  .|+++++||.+..||...
T Consensus       222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999999999987  999999999999999873

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=5.2e-08  Score=74.29  Aligned_cols=218  Identities=12%  Similarity=0.036  Sum_probs=137.1

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE-cCCCCEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL-DQDCGLLY  170 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~  170 (368)
                      ..+|+.|+.-|.+.+|...+.+.....-..                               |...|+-+.= ......+.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~-------------------------------snn~v~~~~r~cd~~~~~~  132 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDV-------------------------------SNNDVTLVKRYCDLKFPLN  132 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecc-------------------------------cccchhhhhhhccccccee
Confidence            568999999999999999876532221110                               2222221111 11223466


Q ss_pred             EEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-eeccccccEEE
Q 047325          171 TASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTA  248 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~  248 (368)
                      .++.|.++++.++.-+..........-.+.++.+++++ ++++.+....|..|.+.....    .... ........-.+
T Consensus       133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFY  208 (344)
T ss_pred             eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCcee
Confidence            77888999998886544333222222347899999999 888889899999999976543    1111 23334445567


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEeCCCccccce----eeeccceEE--EEEEeCC--CEEEEeeCCCeEEEEecCCCceee
Q 047325          249 LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG----VLKGHKLAV--LCLAAAG--KLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       249 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~--~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      ..|+.....+|++..||++.|||++....+..    ....|.+.+  ..|++.|  .+|+..-.-+.+++-|+++.....
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            88999889999999999999999985433322    223455555  4555543  356666667889999988753222


Q ss_pred             eEee-----ecccc-CeeEEEEecCCeeee
Q 047325          321 LSVL-----TGHTG-PVKCLAVEEDRDSSS  344 (368)
Q Consensus       321 ~~~~-----~~h~~-~v~~l~~~~~~~~~~  344 (368)
                      +..+     ..|.. .|..-.|+.++...-
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             EEecCccccccccccccccccccCCCcccc
Confidence            2211     22333 377778887776443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=8.2e-08  Score=84.72  Aligned_cols=222  Identities=13%  Similarity=0.192  Sum_probs=146.6

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEEcCCcce-ecccCCCCC-eeEEEEeC--CEEEEEeCCCe-----EEEEeecCCCccc
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVWKNLKEF-CGFKASSGL-VKAIVISG--EKIFTGHQDGK-----IRVWKISPKNQSV  116 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~-v~~~~~~~--~~l~s~~~dg~-----i~vw~~~~~~~~~  116 (368)
                      .|.|++.++..+|.|+.+|.|.+.+..-.. ..++.+... |..+....  ++|++.+.|+.     ++||+++.-+...
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            889998888899999999999988876444 778887777 55555543  48888877654     9999998654211


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc----CCeEEEEe
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS----DSKCLESV  192 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~  192 (368)
                      .      |.....+            + ...........++.+++.+.+-+.+++|-.+|.|..+.-.    .+....-.
T Consensus       107 s------P~c~~~~------------r-i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~  167 (933)
T KOG2114|consen  107 S------PQCLYEH------------R-IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS  167 (933)
T ss_pred             C------cceeeee------------e-eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence            1      0000000            0 0000001145778999999999999999999999988432    12222222


Q ss_pred             ecCCCceEEEEeCCCC-e-EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325          193 SAHDDAVNSVVSSSEG-L-IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  270 (368)
                      .....+|+.+++..++ . ++++ .-..|.+|.+....     +.......+...+.|..+++....+++++. ..+.+|
T Consensus       168 ~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY  240 (933)
T KOG2114|consen  168 HRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFY  240 (933)
T ss_pred             ccCCCCceeeEEecCCceeEEEE-ecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecC-ceEEEE
Confidence            2346789999999888 3 3433 34578999987321     234557788889999999987665666654 459999


Q ss_pred             eCCCccccceeeeccceEEEEEE
Q 047325          271 EREKQLSHGGVLKGHKLAVLCLA  293 (368)
Q Consensus       271 d~~~~~~~~~~~~~~~~~~~~~~  293 (368)
                      |............+|......++
T Consensus       241 ~sd~~~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  241 DSDGRGPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             cCCCcceeeeecCCCeEEEEEEe
Confidence            98865554333336665554443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.08  E-value=2.6e-07  Score=86.78  Aligned_cols=306  Identities=12%  Similarity=0.039  Sum_probs=170.6

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEE----cCCccee-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVW----KNLKEFC-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw----~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      ..+.|.++.+-.+  .++.+..+|.|.+.    +...... ..-.-...|.+++|+  ++.|+..+.++++.+.+-+ -+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd  152 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD  152 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence            3467888888644  67788888999998    5554333 233456789999999  6788888889998876422 11


Q ss_pred             ccccccCCccccc-------------eeeeeccCCCCce----eEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--
Q 047325          114 QSVHKRAGTLPTL-------------KDIFKSSIKPSNY----IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--  174 (368)
Q Consensus       114 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  174 (368)
                      .............             ..+.....+....    ..+.......+. +.+.-..++|-.||.++|+.+.  
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence            1111111000000             0000000000000    000000111222 4456678999999999999875  


Q ss_pred             -C---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          175 -D---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       175 -d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                       .   ..+++|+- .|+...+-+.-.+--.+++|.|.| ++++...   ...|.+|.-+....   ......+......|
T Consensus       232 ~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh---geF~l~~~~~~~~v  307 (928)
T PF04762_consen  232 ETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH---GEFTLRFDPEEEKV  307 (928)
T ss_pred             CCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe---eeEecCCCCCCcee
Confidence             2   47999995 476555555444445678999999 5555543   35677776543211   11111223456779


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCccc-cceeeec-cce--EEEEEEeC-CCEEEEeeCCCeEEEEecC----CCc
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLS-HGGVLKG-HKL--AVLCLAAA-GKLVFSGSADKTICVWRRD----GAI  317 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-~~~--~~~~~~~~-~~~l~~~~~dg~i~iw~~~----~~~  317 (368)
                      ..+.|++++..||.-..|. |.+|-..+-.- ++..+.- ...  ....|+|. ...|.....+|.+..+++.    ...
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~  386 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP  386 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence            9999999999999987665 99998765321 1122221 111  12444442 3445555555555544421    000


Q ss_pred             ----------------------------eee--eEeeeccccCeeEEEEecCCe--eeecCCcceEEEEEe
Q 047325          318 ----------------------------HTC--LSVLTGHTGPVKCLAVEEDRD--SSSSTSSCAQRWIVY  356 (368)
Q Consensus       318 ----------------------------~~~--~~~~~~h~~~v~~l~~~~~~~--~~~~~~~~~~~w~l~  356 (368)
                                                  +.+  ...+ ....+|.+++|++++.  .+.++++...+|.+.
T Consensus       387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence                                        000  1111 2356799999999985  344556666666543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=1.8e-07  Score=77.73  Aligned_cols=265  Identities=11%  Similarity=0.123  Sum_probs=166.2

Q ss_pred             ccccccCCCceeeeccCcCCc-----EEEEEecCCEEEEccCCCcEEEEcCCcceecccCC---CCCeeEEEEeCC----
Q 047325           26 QFEENLPQNGLIGSLVREEGH-----IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKAS---SGLVKAIVISGE----   93 (368)
Q Consensus        26 ~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~v~~~~~~~~----   93 (368)
                      .+..+...+.++.++.+-..+     +.....+..++|-- ....+.|+++...+.....+   ...|....+++.    
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~  188 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHD  188 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCc
Confidence            556677788888888777666     33334444443322 23468888864333222222   234555555522    


Q ss_pred             EEE-----EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE
Q 047325           94 KIF-----TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL  168 (368)
Q Consensus        94 ~l~-----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  168 (368)
                      .|+     ..+.++++++|.+..+........                                ..-.=..+.|++.|++
T Consensus       189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--------------------------------fk~~~~qLkW~~~g~~  236 (561)
T COG5354         189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--------------------------------FKVSGVQLKWQVLGKY  236 (561)
T ss_pred             eEEEEccccCCCCcEEEEEEccCCCeeeeeee--------------------------------EeecccEEEEecCCce
Confidence            222     134566677776654332211111                                0111134667777665


Q ss_pred             EEEEe-----------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325          169 LYTAS-----------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       169 l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  234 (368)
                      +++--           ....+.|++++...+... ....++|...+|.|.+   -+++|..+..+.++|++.+       
T Consensus       237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------  308 (561)
T COG5354         237 LLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------  308 (561)
T ss_pred             EEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-------
Confidence            54321           135688888874433332 2567899999999987   4556678899999999864       


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee------CC
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS------AD  305 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d  305 (368)
                        ......+..-..+.|+|.+++++.++-|   |.+.+||..........+.+.......++||++++.+..      .|
T Consensus       309 --l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~D  386 (561)
T COG5354         309 --LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVD  386 (561)
T ss_pred             --eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccC
Confidence              2223344455678899999999886644   689999998877776677778888889999999988764      37


Q ss_pred             CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ..|.|||+....   +.       ..+.+.|.|.+++.
T Consensus       387 n~i~l~~v~g~~---~f-------el~~~~W~p~~~~~  414 (561)
T COG5354         387 NSIKLWDVYGAK---VF-------ELTNITWDPSGQYV  414 (561)
T ss_pred             cceEEEEecCch---hh-------hhhhccccCCcccc
Confidence            889999987641   11       45667788877743

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.7e-08  Score=82.35  Aligned_cols=243  Identities=14%  Similarity=0.098  Sum_probs=160.7

Q ss_pred             CcCCcEEEEEec-CCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCC
Q 047325           42 REEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPK  112 (368)
Q Consensus        42 ~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~  112 (368)
                      -|.+.|+-+... -+++.+++.||.++.|....     -+..+..|.+.|.+++.+  +-.+.|.+. |..++++|+++-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            377778877665 56999999999999998654     234567888888888877  667777677 999999999987


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-C-CEEEEE-eCCCcEEEEEccCCe--
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-C-GLLYTA-SWDRTFKVWRISDSK--  187 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~i~iwd~~~~~--  187 (368)
                      ....-......|.                              .+. ...++. . ..++++ -.++.+.++|-...-  
T Consensus        87 DminmiKL~~lPg------------------------------~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q  135 (558)
T KOG0882|consen   87 DMINMIKLVDLPG------------------------------FAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ  135 (558)
T ss_pred             chhhhcccccCCC------------------------------ceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence            6554333332221                              111 111221 1 123333 357899999976443  


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------Cc---ccccceeeccccccEEEEEEcCCCCE
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------GT---KHSLAQTLLKQECAVTALVVSSSRSI  257 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~---~~~~~~~~~~~~~~i~~~~~~~~~~~  257 (368)
                      ....-+-|..+|.++.+.+-+ .+++....|.|.-|.....-+      ..   ....+..+........++.|+|++..
T Consensus       136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q  215 (558)
T KOG0882|consen  136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ  215 (558)
T ss_pred             cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence            333444589999999999988 888888899999999873100      00   00112223345567889999999999


Q ss_pred             EEEecCCCcEEEEeCCCcccccee-------------------------------eeccceE---EEEEEeCCCEEEEee
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGV-------------------------------LKGHKLA---VLCLAAAGKLVFSGS  303 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------~~~~~~~---~~~~~~~~~~l~~~~  303 (368)
                      +.+-+.|..|++++.+++......                               +..|...   -.+|.-.+++|+-|+
T Consensus       216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t  295 (558)
T KOG0882|consen  216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT  295 (558)
T ss_pred             ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence            999999999999998765432110                               0112111   134555688888777


Q ss_pred             CCCeEEEEecCCC
Q 047325          304 ADKTICVWRRDGA  316 (368)
Q Consensus       304 ~dg~i~iw~~~~~  316 (368)
                      -=| |++.++++.
T Consensus       296 ~~g-ikvin~~tn  307 (558)
T KOG0882|consen  296 ILG-IKVINLDTN  307 (558)
T ss_pred             cee-EEEEEeecC
Confidence            655 777777665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.03  E-value=3.3e-06  Score=69.96  Aligned_cols=259  Identities=10%  Similarity=0.080  Sum_probs=140.6

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCCEEE-Ecc---------CCCcEEEEcCCccee--cccC---------CCCCeeEEE
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKDLLY-TGS---------DSKNIRVWKNLKEFC--GFKA---------SSGLVKAIV   89 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~~l~-s~~---------~dg~i~iw~~~~~~~--~~~~---------~~~~v~~~~   89 (368)
                      ....+++.++..-..+-.-++.+++.|+ +.+         .+..|.+||..+...  .+..         .......+.
T Consensus        34 ~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls  113 (352)
T TIGR02658        34 GEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT  113 (352)
T ss_pred             CCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence            3445555555433333222555666444 444         578999999875322  2221         111234444


Q ss_pred             EeCCEEEEEe-C-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325           90 ISGEKIFTGH-Q-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG  167 (368)
Q Consensus        90 ~~~~~l~s~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  167 (368)
                      .+|++|+... . +..|.+.|+.+++.......+...   .                    .+  -..+-..+..+.|+.
T Consensus       114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~---~--------------------vy--~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658       114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY---H--------------------IF--PTANDTFFMHCRDGS  168 (352)
T ss_pred             CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc---E--------------------EE--EecCCccEEEeecCc
Confidence            4588888776 3 689999999988754433321100   0                    00  001111122223333


Q ss_pred             EEEE-EeCCCcEEEEEccCCeEEEEeecCCCceEE-EEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec---
Q 047325          168 LLYT-ASWDRTFKVWRISDSKCLESVSAHDDAVNS-VVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL---  240 (368)
Q Consensus       168 ~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---  240 (368)
                      .+.. -..+|....   .   ....+.....++.. -.+.+ ++ .+++..+ |.|.+.|+....... ......+.   
T Consensus       169 ~~~v~~d~~g~~~~---~---~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~  240 (352)
T TIGR02658       169 LAKVGYGTKGNPKI---K---PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAE  240 (352)
T ss_pred             eEEEEecCCCceEE---e---eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee-cceeeeccccc
Confidence            2221 122222110   0   00111110000000 02344 66 5655555 999999975433211 11111111   


Q ss_pred             ----cccccEEEEEEcCCCCEEEEec----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEEee-C
Q 047325          241 ----KQECAVTALVVSSSRSIVYCGS----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFSGS-A  304 (368)
Q Consensus       241 ----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~  304 (368)
                          -..+.+.-++++|+++.++...          ..+.|.++|..+.+.......++...-+.+++|++ +|++.. .
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC
Confidence                1234455699999999888742          22479999999988887777788888899999999 887666 5


Q ss_pred             CCeEEEEecCCCceeeeEee
Q 047325          305 DKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~  324 (368)
                      ++.|.++|..+.  +.+..+
T Consensus       321 s~~VsViD~~t~--k~i~~i  338 (352)
T TIGR02658       321 DKTLYIFDAETG--KELSSV  338 (352)
T ss_pred             CCcEEEEECcCC--eEEeee
Confidence            788999998776  556655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=2.6e-07  Score=76.22  Aligned_cols=144  Identities=7%  Similarity=0.032  Sum_probs=106.7

Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCC-cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDR-TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .+|...|.-..+.-+++-++.|..|| .+-++|.++++.. .+...-+.|.++..+++| +++++.....|.+.|+.++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            45778888888888888899999999 8999999877644 455567889999999999 78888888899999998873


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEecCCC----cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (368)
                      .      ...-....+-|+.+.|+|+++++|-+--+|    .|+++|+..++.............-+|.|++++|.-
T Consensus       435 v------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         435 V------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             e------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence            2      222233456799999999999999887666    589999987655432222222223445556665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=2.5e-09  Score=84.15  Aligned_cols=162  Identities=14%  Similarity=0.208  Sum_probs=115.7

Q ss_pred             EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      ++.+.+-.+.+-|+++|... .+. ..+.|.++.|...+ +++.|+.+|.|..+|+|...++....  ....-|...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhh
Confidence            44555677889998877533 333 56678888888755 99999999999999999764433322  223357888999


Q ss_pred             EEEcC-CCCEEEEecCCCcEEEEeCCCccc--cceeeeccceEE----EEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          249 LVVSS-SRSIVYCGSSDGLVNFWEREKQLS--HGGVLKGHKLAV----LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       249 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                      +..-. ++++|++.+.+|.|.+||++--+.  -...+.+|....    ..+.+....++++++|...|||.++.+  ..+
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g--hLl  381 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG--HLL  381 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC--cee
Confidence            88776 788999999999999999985433  234556665433    345567788999999999999998876  555


Q ss_pred             Eeeecc----ccCeeEEEEe
Q 047325          322 SVLTGH----TGPVKCLAVE  337 (368)
Q Consensus       322 ~~~~~h----~~~v~~l~~~  337 (368)
                      .+++-.    +.-+.+++|.
T Consensus       382 ~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eccCCCCccccccccceehh
Confidence            555422    2235556664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.4e-06  Score=73.50  Aligned_cols=287  Identities=11%  Similarity=0.079  Sum_probs=164.6

Q ss_pred             EEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeC-----------CCeEEEEeecCC
Q 047325           50 LAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQ-----------DGKIRVWKISPK  112 (368)
Q Consensus        50 ~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg~i~vw~~~~~  112 (368)
                      +.|+  |.+|+|--..| |.+|--..  .++.|. | ..|.-+.|+  .+||+|-+.           ...++|||+.++
T Consensus       216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            4444  55888887777 67886442  222232 3 235666666  678888653           257999999999


Q ss_pred             CccccccCCc-cccceeeeeccCCCCceeEecccceeee--------ee---cCCCEeEEEEcCCCCEEEEEeC-----C
Q 047325          113 NQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALW--------IR---HSDAVSCMSLDQDCGLLYTASW-----D  175 (368)
Q Consensus       113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~v~~~~~~~~~~~l~~~~~-----d  175 (368)
                      .....+.... ....-.++..+.+...+..+......++        .+   ....|....|+|.++.||-=..     -
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~p  372 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIP  372 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCc
Confidence            8766554421 1111223333333333333322222211        11   2346777788888776654332     1


Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE----------cCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG----------SADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      ..+.+..+.+++.+++..-+.-.=..+.|-.+| +|+.-          +.-..+.|+.++...      ..........
T Consensus       373 arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd------Ipve~velke  446 (698)
T KOG2314|consen  373 ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD------IPVEVVELKE  446 (698)
T ss_pred             ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC------CCceeeecch
Confidence            246666777777666655554444455666666 44332          112235566665432      1222234556


Q ss_pred             cEEEEEEcCCCCEEEEecC---CCcEEEEeCCC-ccc--cceeeeccceEEEEEEeCCCEEEEee---CCCeEEEEecCC
Q 047325          245 AVTALVVSSSRSIVYCGSS---DGLVNFWEREK-QLS--HGGVLKGHKLAVLCLAAAGKLVFSGS---ADKTICVWRRDG  315 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~  315 (368)
                      .|...+|-|.|+.+++-+.   ..++.+|..++ ...  +...+......-+.++|.|++++.+.   ..|.+.++|.+.
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            7899999999998776543   35788888773 211  12223333444577899999988764   578899999875


Q ss_pred             CceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ...+.+.. ..| ...+.+.|.|.|+++.+++
T Consensus       527 a~~k~~~~-~eh-~~at~veWDPtGRYvvT~s  556 (698)
T KOG2314|consen  527 ADLKDTAS-PEH-FAATEVEWDPTGRYVVTSS  556 (698)
T ss_pred             hhhhhccC-ccc-cccccceECCCCCEEEEee
Confidence            32222221 123 3468899999999766554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=2.1e-09  Score=84.51  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=108.6

Q ss_pred             EEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325           58 YTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK  135 (368)
Q Consensus        58 ~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (368)
                      ++.+.+-.|-+-|++++....-...+.|.++.|.  ++.+..|+.+|.|...|++....-..-                 
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~-----------------  290 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW-----------------  290 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc-----------------
Confidence            5556667788889888777666678889999987  789999999999999999876321100                 


Q ss_pred             CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeE---EEEeecCCCceEEE--EeCCC-C
Q 047325          136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKC---LESVSAHDDAVNSV--VSSSE-G  208 (368)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~--~~~~~-~  208 (368)
                                 .....-|.+.|+++.... ++++|++.+.+|.|++||++--++   +..+.+|-..-.-+  -..+. |
T Consensus       291 -----------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg  359 (425)
T KOG2695|consen  291 -----------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG  359 (425)
T ss_pred             -----------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence                       001112999999999887 788999999999999999987666   88888875433322  22333 3


Q ss_pred             eEEEEcCCCeEEEEEcCCCC
Q 047325          209 LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .+++++.|...+||.++.+.
T Consensus       360 ~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  360 SIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             eEEEccCeeEEEEEecccCc
Confidence            88899999999999998763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.96  E-value=2.4e-06  Score=80.46  Aligned_cols=218  Identities=16%  Similarity=0.180  Sum_probs=138.9

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEe----ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWK----ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      ..+.|.++.+-  .+.++.+..+|.|.+..    .......                                 ....-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------------------~VG~vd  120 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------------------------------IVGSVD  120 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------------------------------EEEEEc
Confidence            45678888876  66788889999999983    3322211                                 111156


Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE------------------------eec----------------
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES------------------------VSA----------------  194 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------~~~----------------  194 (368)
                      ..|.+++|+||+..|+..+.++++.+.+- +..++..                        |.|                
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            78999999999999999999999888752 2211111                        100                


Q ss_pred             --------CCCceEEEEeCCCC-eEEEEcC------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325          195 --------HDDAVNSVVSSSEG-LIFTGSA------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       195 --------~~~~v~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                              ....-..++|-.|| ++++.+-      -+.+++|+-+..       ....-..-.+--.+++|.|.|+++|
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-------L~stSE~v~gLe~~l~WrPsG~lIA  272 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-------LQSTSEPVDGLEGALSWRPSGNLIA  272 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-------EEeccccCCCccCCccCCCCCCEEE
Confidence                    12234568899999 7776653      257999997621       2222222233345789999999999


Q ss_pred             EecC---CCcEEEEeCCCccccce-eee--ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccC
Q 047325          260 CGSS---DGLVNFWEREKQLSHGG-VLK--GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGP  330 (368)
Q Consensus       260 ~~~~---dg~i~i~d~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~  330 (368)
                      +.-.   ...|.+|.-.. ..... .+.  .....+  +.++.|+..|+..-.|. |.+|-..+.-+...+++.-. ...
T Consensus       273 ~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~  350 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES  350 (928)
T ss_pred             EEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence            8764   34577777442 22211 111  223344  55556899999977665 99998887766666666533 334


Q ss_pred             eeEEEEecCCe
Q 047325          331 VKCLAVEEDRD  341 (368)
Q Consensus       331 v~~l~~~~~~~  341 (368)
                      +..+.|+|...
T Consensus       351 ~~~~~Wdpe~p  361 (928)
T PF04762_consen  351 VNFVKWDPEKP  361 (928)
T ss_pred             CCceEECCCCC
Confidence            56699999754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.95  E-value=9.7e-07  Score=76.20  Aligned_cols=228  Identities=14%  Similarity=0.141  Sum_probs=134.6

Q ss_pred             EecCCEEEEccCCCcEEEEcCCcceeccc--CCC----------CC-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKEFCGFK--ASS----------GL-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~----------~~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      ...++.+++++.+|.+.-+|..+.....+  ...          .. ...+...++.++.++.+|.+..+|.++++....
T Consensus        66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            34567777788888888888764322211  110          01 112445578888999999999999999987665


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                      .......                            ...++    .  .+..++.+..++.+..+|..+|+.+-.+.....
T Consensus       146 ~~~~~~~----------------------------~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        146 TKVAGEA----------------------------LSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             ccCCCce----------------------------ecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence            5432100                            11111    1  134677778889999999999998877654211


Q ss_pred             ce-----EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeecccc-ccEEEEEEcC--CCCEEEEecCCCcEEE
Q 047325          198 AV-----NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE-CAVTALVVSS--SRSIVYCGSSDGLVNF  269 (368)
Q Consensus       198 ~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~dg~i~i  269 (368)
                      .+     .+-.. .++.++.++.+|.+..+|..++................ .....+..+|  .+..++.++.+|.+..
T Consensus       192 ~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a  270 (394)
T PRK11138        192 SLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA  270 (394)
T ss_pred             cccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence            11     00111 13467778889999999987764322211100000000 0011111122  2456777778899999


Q ss_pred             EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      +|..+++.......+.   ...+...+..|+.++.+|.+..+|..++
T Consensus       271 ld~~tG~~~W~~~~~~---~~~~~~~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        271 LDLRSGQIVWKREYGS---VNDFAVDGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             EECCCCCEEEeecCCC---ccCcEEECCEEEEEcCCCeEEEEECCCC
Confidence            9999876653322211   1123346778888889999999988766

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.95  E-value=1.1e-06  Score=70.32  Aligned_cols=211  Identities=14%  Similarity=0.104  Sum_probs=125.8

Q ss_pred             CCcEEEEcCCccee--cccC--CCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           63 SKNIRVWKNLKEFC--GFKA--SSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        63 dg~i~iw~~~~~~~--~~~~--~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      +|+|..||..+...  ....  ......+... .++.+++++.++.|..||..+++..........              
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--------------   67 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--------------   67 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--------------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--------------
Confidence            67788888754322  2211  1122222233 688899999999999999999886555443211              


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecCCC-----ceEEEEeCCCCeEE
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAHDD-----AVNSVVSSSEGLIF  211 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~l~  211 (368)
                                     ....   .  ...+..+++++.++.|..+|..+|+.+... .....     ......+. ++.++
T Consensus        68 ---------------~~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~  126 (238)
T PF13360_consen   68 ---------------ISGA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLY  126 (238)
T ss_dssp             ---------------GGSG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEE
T ss_pred             ---------------ccce---e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEE
Confidence                           0011   1  113456777778889999999999998874 32211     11122222 34788


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeecccc--c------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQE--C------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK  283 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  283 (368)
                      ++..++.|..+|++++......    ......  .      .+..-....++ .++.+..++.+.-+|+++++... ...
T Consensus       127 ~~~~~g~l~~~d~~tG~~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~  200 (238)
T PF13360_consen  127 VGTSSGKLVALDPKTGKLLWKY----PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP  200 (238)
T ss_dssp             EEETCSEEEEEETTTTEEEEEE----ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC
T ss_pred             EEeccCcEEEEecCCCcEEEEe----ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec
Confidence            8888999999999877431111    111101  1      11222222244 67777777754444999887552 222


Q ss_pred             ccceEEEE-EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          284 GHKLAVLC-LAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       284 ~~~~~~~~-~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                        ...... ...++..|+.++.++.|..||+.++
T Consensus       201 --~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  201 --ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             --SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             --CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence              222333 6678888888889999999999887

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.95  E-value=9.7e-06  Score=65.17  Aligned_cols=172  Identities=17%  Similarity=0.163  Sum_probs=107.7

Q ss_pred             EeEEEEc-CCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeEEEE-cCC--------CeEEE
Q 047325          157 VSCMSLD-QDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLIFTG-SAD--------GTVKV  221 (368)
Q Consensus       157 v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~-~~d--------g~i~i  221 (368)
                      ...+++. ++ ..++.+..+ .+.++|+.+++.......     .....+.+++.++|.|..+ ...        |.|..
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677887 55 556666654 466669998865544443     3456889999999944444 322        55777


Q ss_pred             EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc-c--ceee---eccc--eEEEEE
Q 047325          222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS-H--GGVL---KGHK--LAVLCL  292 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~--~~~~---~~~~--~~~~~~  292 (368)
                      ++.. .       ........-...+.++|+|+++.|+ +-+..+.|..|++..... .  ...+   ....  ..-+++
T Consensus       120 ~~~~-~-------~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  120 IDPD-G-------KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV  191 (246)
T ss_dssp             EETT-S-------EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred             ECCC-C-------eEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence            7765 2       1222333345578999999998775 567778899999863222 1  1111   1111  223667


Q ss_pred             EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCe
Q 047325          293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRD  341 (368)
Q Consensus       293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~  341 (368)
                      ..+|++.++....+.|.+++.+ +  +.+..+.-....+++++|. ++..
T Consensus       192 D~~G~l~va~~~~~~I~~~~p~-G--~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  192 DSDGNLWVADWGGGRIVVFDPD-G--KLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             BTTS-EEEEEETTTEEEEEETT-S--CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             cCCCCEEEEEcCCCEEEEECCC-c--cEEEEEcCCCCCEEEEEEECCCCC
Confidence            7789888888889999999876 3  4555555445589999995 5544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.91  E-value=3.3e-06  Score=65.56  Aligned_cols=168  Identities=11%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-------CCceEEEEeCCCC-------eEEEEcCCCeEEEE
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-------DDAVNSVVSSSEG-------LIFTGSADGTVKVW  222 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-------~l~~~~~dg~i~i~  222 (368)
                      =+-++|+||+..||.+...|+|+++|+.. ..+..+...       ..+|..+.|.+..       .|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            35689999999999999999999999964 333344321       2456666554321       67777888888888


Q ss_pred             EcCCCCCCccccccee--e-ccccccEEEEEEcCCCCEEEEecCC-C----------cEEEEeCCCccc-----------
Q 047325          223 KREQHGKGTKHSLAQT--L-LKQECAVTALVVSSSRSIVYCGSSD-G----------LVNFWEREKQLS-----------  277 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d-g----------~i~i~d~~~~~~-----------  277 (368)
                      -+..+.. ........  + ......|.++.++|..++|+.|+.. .          -+.-|.+-+...           
T Consensus       125 ~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  125 LVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEcccC-CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            7643211 11112222  2 2246789999999999988877532 1          144454211100           


Q ss_pred             ---------cce-----ee-----eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325          278 ---------HGG-----VL-----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT  328 (368)
Q Consensus       278 ---------~~~-----~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~  328 (368)
                               ...     .+     .......++++|||..|++...+|.|.+|++..-  .....+..++
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL--~~~~~W~~~e  271 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL--RLQRSWKQDE  271 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc--hhhcccchhh
Confidence                     000     00     1122344788999999999999999999998765  4444444333

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=9.5e-06  Score=65.21  Aligned_cols=197  Identities=11%  Similarity=0.051  Sum_probs=123.0

Q ss_pred             EEEecC---CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325           49 SLAASK---DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        49 ~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      +..|++   .++++--..+.|..|+............. ...+.+.  +..|+.+..++. .++|+.+++......... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~-   80 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPD-   80 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEET-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccC-
Confidence            455653   37777777899999998766544322222 5555665  677777776555 445877764322211100 


Q ss_pred             ccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeCC--------CcEEEEEccCCeEEEEeec
Q 047325          124 PTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASWD--------RTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~  194 (368)
                                                 .. .....+.+++.|+|++.++....        |.|..++.. ++...... 
T Consensus        81 ---------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  131 (246)
T PF08450_consen   81 ---------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-  131 (246)
T ss_dssp             ---------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred             ---------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence                                       00 23457889999999977776543        457777776 55444443 


Q ss_pred             CCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCC-CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          195 HDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGK-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       195 ~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      .-...+.++|+|++ .| ++-+..+.|..+++..... .........+....+..-.+++..+|++.++....+.|.++|
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            34557899999999 44 5667889999999975432 111112222233334588899999999888888889999999


Q ss_pred             CCCcccc
Q 047325          272 REKQLSH  278 (368)
Q Consensus       272 ~~~~~~~  278 (368)
                      .+ ++..
T Consensus       212 p~-G~~~  217 (246)
T PF08450_consen  212 PD-GKLL  217 (246)
T ss_dssp             TT-SCEE
T ss_pred             CC-ccEE
Confidence            88 4444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1e-07  Score=83.49  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=128.5

Q ss_pred             CCcEEEEEecCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325           44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      .+.+.|.+++..+|+-|..+|.|++.+..........|...    ...|.++++|+.||+|.|-.+.+.+......    
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----  110 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD----  110 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe----
Confidence            45688889999999999999999999977554544455444    3449999999999999999988776543322    


Q ss_pred             ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----CCEEEEEeCCCcEEEEEcc--CCeEEEEeecCC
Q 047325          124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----CGLLYTASWDRTFKVWRIS--DSKCLESVSAHD  196 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~  196 (368)
                                                   ...++.+++++|+     .+.+++|+.-| +.++.-+  ..+....+....
T Consensus       111 -----------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen  111 -----------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             -----------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence                                         4578899999997     56899999888 7777532  111122455677


Q ss_pred             CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          197 DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       197 ~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ++|.++.|..+  +++-..|-.|++||..........++.......+.....+.|.++. .|+.|=. .+|++..++
T Consensus       161 G~I~~i~W~g~--lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  161 GPIHSIKWRGN--LIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK  233 (846)
T ss_pred             cceEEEEecCc--EEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence            89999999643  4445556669999997664422222222222223334456777654 4555543 468888877

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.89  E-value=6.8e-07  Score=69.23  Aligned_cols=190  Identities=15%  Similarity=0.184  Sum_probs=108.2

Q ss_pred             EEEEecCC--EEEEccCCCcEEEEcCCc-ceeccc-------CCCCCeeEEEEe--------CCEEEEEeCCCeEEEEee
Q 047325           48 YSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFK-------ASSGLVKAIVIS--------GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        48 ~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~-------~~~~~v~~~~~~--------~~~l~s~~~dg~i~vw~~  109 (368)
                      ..++|+++  +||.+...|+|+++|+.. .+....       .-...|..+.|.        ...|+.-..+|.++-|-+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            35677766  999999999999999863 222221       123456666664        225677777888887776


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      ..+........                         ....+ ..+...|.++.++|..++|++|+....      +++. 
T Consensus       127 s~gt~q~y~e~-------------------------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-  174 (282)
T PF15492_consen  127 SVGTNQGYQEN-------------------------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-  174 (282)
T ss_pred             EcccCCcceee-------------------------EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-
Confidence            43321111000                         00011 115779999999999888888875432      1110 


Q ss_pred             EEEeecCCCceEEEEeCCCC---eEEEEcCCCeE------EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325          189 LESVSAHDDAVNSVVSSSEG---LIFTGSADGTV------KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i------~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                         -++....+++-....+.   ..++...|+..      .+|.+-..      ............|..+..+|||+.|+
T Consensus       175 ---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~fs~~~~~~d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  175 ---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFFSRQGQEQDGIFKMSLSPDGSLLA  245 (282)
T ss_pred             ---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eeeeccccCCCceEEEEECCCCCEEE
Confidence               11122233333332222   33333333221      12221110      01111233567899999999999999


Q ss_pred             EecCCCcEEEEeCCCcccc
Q 047325          260 CGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       260 ~~~~dg~i~i~d~~~~~~~  278 (368)
                      +...+|.|.+|++.+-...
T Consensus       246 ~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  246 CIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             EEEcCCeEEEEecCcchhh
Confidence            9999999999999864433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=5.7e-08  Score=86.20  Aligned_cols=179  Identities=8%  Similarity=0.066  Sum_probs=125.7

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      ++..++.|+....+..+|+++.+..+...-..+.|.-++.+ +..+++|...|+|.+-|.++.      .....+..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~------~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSF------ETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcC------ceeeeeecccc
Confidence            44578888888889999999988877776555556555532 238999999999999999876      46788899999


Q ss_pred             cEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecC
Q 047325          245 AVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~  314 (368)
                      .|..+..  .|+.|++++.         |.-|++||++..+.+.-....-......|.|. ...+++++..|...+-|..
T Consensus       219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence            9887665  6888988875         45689999997554422221122234556664 6678888999999999832


Q ss_pred             CCce--eeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          315 GAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       315 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      +...  ..+..+......+..+.++++++.+|.++..+.+
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence            2111  2233333445569999999999977766655444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=5.4e-08  Score=86.37  Aligned_cols=182  Identities=15%  Similarity=0.177  Sum_probs=133.8

Q ss_pred             CCEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           54 KDLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      ++.++-|+-...+..+|+.+..  ....-..+.|.-++.+++++.+|...|+|.+-|.++.+...               
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~ih---------------  211 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIH---------------  211 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceee---------------
Confidence            4466677777777777776442  23333344588888889999999999999999998776433               


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC---------CCcEEEEEccCCeEEEEeecCCCceEEE
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW---------DRTFKVWRISDSKCLESVSAHDDAVNSV  202 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~  202 (368)
                                       .+..|.+.|.++..  .|+.|++||.         |..|++||++..+.+.-+..+.++ .-+
T Consensus       212 -----------------t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~fl  271 (1118)
T KOG1275|consen  212 -----------------TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFL  271 (1118)
T ss_pred             -----------------eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhh
Confidence                             23349998887766  5778999875         557899999988877777666554 556


Q ss_pred             EeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          203 VSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       203 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      .|+|.-  .+++++..|...+-|.....+.  ..-..........+..++++++++.++.|..+|.|.+|.-
T Consensus       272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            788865  8999999999999994432220  0112333444556999999999999999999999999973

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.84  E-value=2.1e-06  Score=74.59  Aligned_cols=135  Identities=10%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEEcCCccee---cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVWKNLKEFC---GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      ..+|++-..++++.|+.-|.+++++-.....   ...+..+.+..+..+  ..++|.|+..|.|.++-++..........
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            4677888889999999999999999764322   222334444455555  66788888899999998876432211111


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCC
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHD  196 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~  196 (368)
                      ...                          -..|...|++++|++++..+++|...|.|.+-.+.+.    ...+.+-...
T Consensus       117 t~~--------------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen  117 TPC--------------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             ccc--------------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            000                          0118899999999999999999999999999888762    1122223345


Q ss_pred             CceEEEEeCC
Q 047325          197 DAVNSVVSSS  206 (368)
Q Consensus       197 ~~v~~~~~~~  206 (368)
                      ..|-.+....
T Consensus       171 s~IVQlD~~q  180 (726)
T KOG3621|consen  171 SEIVQLDYLQ  180 (726)
T ss_pred             cceEEeeccc
Confidence            5666666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=9.3e-08  Score=76.99  Aligned_cols=151  Identities=13%  Similarity=0.198  Sum_probs=100.8

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      +++++.+..+....++++....+......                          .   ..-...-+.+.+..+...+..
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~--------------------------~---~~v~~~~~ai~~~~~~~sv~v  124 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLD--------------------------V---SCVPKRPTAISFIREDTSVLV  124 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeee--------------------------E---eecccCcceeeeeeccceEEE
Confidence            56777777777777887766553110000                          0   001222334444444444444


Q ss_pred             EeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          172 ASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       172 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      +..-|   .+.+|....+.+. .+-+|-..+..++++||+ .++++..|..|++-......     .......+|+.-|.
T Consensus       125 ~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-----~IesfclGH~eFVS  198 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-----VIESFCLGHKEFVS  198 (390)
T ss_pred             EeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-----chhhhccccHhhee
Confidence            44434   4455554444443 344799999999999999 99999999999998775331     23344567999999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      .++.-++ ..|++++.|+++++||+++++.+
T Consensus       199 ~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  199 TISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            9999865 45899999999999999988766

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=6.9e-06  Score=70.87  Aligned_cols=189  Identities=6%  Similarity=-0.015  Sum_probs=108.0

Q ss_pred             CeeEEEEe--CCE-EEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           84 LVKAIVIS--GEK-IFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        84 ~v~~~~~~--~~~-l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      ....-.|+  |+. ++..+.   +..|.++|+.+++......                                 ..+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---------------------------------~~g~~  235 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---------------------------------SQGML  235 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---------------------------------CCCcE
Confidence            56666776  553 554333   3458888887765322211                                 33445


Q ss_pred             eEEEEcCCCCEEEEE-eC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcCCCCCC
Q 047325          158 SCMSLDQDCGLLYTA-SW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKREQHGKG  230 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~-~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~~~~~~  230 (368)
                      ....|+|||+.++.. +.  +..|.++|+.+++.. .+..+........|+||| .|+ +....+  .|.+.|+..+.. 
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-  313 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-  313 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence            567899999876544 33  346888898777643 343333333455899999 444 433334  577777765421 


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEecCC---------CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---------GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (368)
                            ..+.....  ....|+|+|+.|+.....         ..|.+.|+.++.... ...........++|||+.|+.
T Consensus       314 ------~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        314 ------EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             ------EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEE
Confidence                  11111111  124899999988776543         368888887654321 111112223678999997766


Q ss_pred             eeCC-C--eEEEEecCCC
Q 047325          302 GSAD-K--TICVWRRDGA  316 (368)
Q Consensus       302 ~~~d-g--~i~iw~~~~~  316 (368)
                      ...+ +  .+.+.+++..
T Consensus       385 ~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        385 IKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEccCCcEEEEEEecCCC
Confidence            5543 2  3555666553

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.81  E-value=1.6e-05  Score=67.60  Aligned_cols=270  Identities=11%  Similarity=0.134  Sum_probs=132.6

Q ss_pred             CeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc-cccCCccccceeeeeccCCCCceeEecc----------cceeee
Q 047325           84 LVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV-HKRAGTLPTLKDIFKSSIKPSNYIEVRR----------HRTALW  150 (368)
Q Consensus        84 ~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  150 (368)
                      .|+.+.+.  ...|+.|...|.|.+|.+...+... ............-+.....+....++..          .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            36667776  4578888888888888776554322 0000000000000000111222222211          122334


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee--c------CCCceEEEEeC-----CCC----eEEEE
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS--A------HDDAVNSVVSS-----SEG----LIFTG  213 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~----~l~~~  213 (368)
                      ....++|++++.+ |=.+++.|..+|.+.|.|++....+..-.  .      ....++++.|.     .|+    .+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4467899999997 44599999999999999998887776532  1      23457777664     333    78999


Q ss_pred             cCCCeEEEEEcCCC-CCCcccccceeeccccccEEEEE-EcCC--------------------CCEEEEecCCCcEEEEe
Q 047325          214 SADGTVKVWKREQH-GKGTKHSLAQTLLKQECAVTALV-VSSS--------------------RSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       214 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d  271 (368)
                      ...|.+.+|.+... +.............+.+++..+. ++.+                    -+.++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            99999999988632 11122222222234555665554 3221                    02234444567799999


Q ss_pred             CCCccccceeeecc-ceEEEEEE-----eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec----cccCeeEEEEecCCe
Q 047325          272 REKQLSHGGVLKGH-KLAVLCLA-----AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG----HTGPVKCLAVEEDRD  341 (368)
Q Consensus       272 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~  341 (368)
                      ..+.+.....+..+ .....++.     ..+..|++-..+|.|++|.+..-  +.+....-    ....+....++++|+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--kei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--KEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--hHhhcccCCCccccccccccEECCCCC
Confidence            88765554444221 11223332     24667888889999999988765  44444433    223466778899999


Q ss_pred             eeecCC-cceEEEEEe
Q 047325          342 SSSSTS-SCAQRWIVY  356 (368)
Q Consensus       342 ~~~~~~-~~~~~w~l~  356 (368)
                      .+.-.+ .....+.++
T Consensus       320 i~~~~gpsE~~l~sv~  335 (395)
T PF08596_consen  320 IFYWTGPSEIQLFSVW  335 (395)
T ss_dssp             EEEE-SSSEEEEEEEE
T ss_pred             EEEEeCcccEEEEEEE
Confidence            765443 344444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=1.2e-06  Score=76.93  Aligned_cols=235  Identities=10%  Similarity=0.029  Sum_probs=155.9

Q ss_pred             EEEEEecCC-EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEeC--------------CEEEEEeCCCeEEEEee
Q 047325           47 IYSLAASKD-LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVISG--------------EKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        47 i~~~~~~~~-~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~~--------------~~l~s~~~dg~i~vw~~  109 (368)
                      -.++++++. ++|-|+. ..|.+-|..  +.++.+..|...|+.+.|..              -.|+++...|.|.+||+
T Consensus        18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            446777766 6666654 567788865  56778889999999999951              15778888999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CC-CEEEEEeCCCcEEEEEccC
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DC-GLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~  185 (368)
                      ...........                                |.+++..+.|-+   +. ..|++-....+|.+|+..+
T Consensus        97 ~~~s~~~~l~~--------------------------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   97 VLASVINWLSH--------------------------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             hhhhhhhhhcC--------------------------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            87765444332                                778888898876   23 4566666678999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccc------------------
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQEC------------------  244 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~------------------  244 (368)
                      |+..-..........|+.+.|-.  .+..-+..|.+.+-+.-...+... .+..+....|..                  
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence            99988887777778889988866  666666677777766533221100 000000011100                  


Q ss_pred             -------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecC
Q 047325          245 -------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       245 -------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~  314 (368)
                             ....++|+|.-+.++-......+.++|++-...+... +.......+.+-|+  ...|++.-.||.+.+|-..
T Consensus       225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence                   0123566776554444445677999998865444322 22233445667665  5689999999999999654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=3e-08  Score=54.00  Aligned_cols=38  Identities=37%  Similarity=0.875  Sum_probs=35.8

Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      ++++..+++|...|++++|+|++ .|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46789999999999999999998 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=3.3e-08  Score=53.83  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=33.3

Q ss_pred             eeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          147 TALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      ...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            446678999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.3e-07  Score=77.39  Aligned_cols=243  Identities=12%  Similarity=0.085  Sum_probs=163.4

Q ss_pred             CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           80 ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        80 ~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      -|...|+.+... .+++++++.||.++.|.-..-.-...                             ...+..|...|.
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEf-----------------------------VKhFraHL~~I~   57 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEF-----------------------------VKHFRAHLGVIL   57 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceee-----------------------------hhhhHHHHHHHH
Confidence            377788888777 88999999999999997543111100                             011122778888


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC---eEEEE-cCCCeEEEEEcCCCCCCc
Q 047325          159 CMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG---LIFTG-SADGTVKVWKREQHGKGT  231 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~---~l~~~-~~dg~i~i~d~~~~~~~~  231 (368)
                      +++.+-++.++.+.+. |..++++|+++-..+.-++  ...+.+..+ .++..   .++++ ..++.+.++|-+....  
T Consensus        58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--  134 (558)
T KOG0882|consen   58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC--  134 (558)
T ss_pred             hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--
Confidence            9999999999999777 9999999998766553333  223333333 23332   44433 4578999999876532  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-cccce----e----------ee-ccceEEEEEEeC
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGG----V----------LK-GHKLAVLCLAAA  295 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~----~----------~~-~~~~~~~~~~~~  295 (368)
                        +......-|..+|..+.+.+-+..+++....|.|..|..+.. +.+..    .          .+ .......+++|+
T Consensus       135 --q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~  212 (558)
T KOG0882|consen  135 --QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD  212 (558)
T ss_pred             --ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence              334455668899999999999999999999999999997731 11100    0          01 112234788899


Q ss_pred             CCEEEEeeCCCeEEEEecCCCceeeeEe--------------------------------eecccc-CeeEEEEecCCee
Q 047325          296 GKLVFSGSADKTICVWRRDGAIHTCLSV--------------------------------LTGHTG-PVKCLAVEEDRDS  342 (368)
Q Consensus       296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------------------------~~~h~~-~v~~l~~~~~~~~  342 (368)
                      +..+.+-+.|..|+++++.+++  .++.                                +..|.. .-+.+.|...+.+
T Consensus       213 g~qistl~~DrkVR~F~~KtGk--lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f  290 (558)
T KOG0882|consen  213 GAQISTLNPDRKVRGFVFKTGK--LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF  290 (558)
T ss_pred             cCcccccCcccEEEEEEeccch--hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE
Confidence            9999999999999999876542  1111                                112322 3456788999998


Q ss_pred             eecCCc-ceEEEEEeeC
Q 047325          343 SSSTSS-CAQRWIVYSG  358 (368)
Q Consensus       343 ~~~~~~-~~~~w~l~sg  358 (368)
                      +..+.- .+++..|.++
T Consensus       291 lly~t~~gikvin~~tn  307 (558)
T KOG0882|consen  291 LLYGTILGIKVINLDTN  307 (558)
T ss_pred             EEeecceeEEEEEeecC
Confidence            887763 4565555543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=1.4e-05  Score=64.03  Aligned_cols=188  Identities=18%  Similarity=0.197  Sum_probs=116.1

Q ss_pred             cCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccc-cCCccccceee
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK-RAGTLPTLKDI  129 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~  129 (368)
                      .+..+++++.++.+..||..+...  .+.............++.++.++.++.+..+|..+++..... .... +..   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~---  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPA---  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccc-ccc---
Confidence            667777778999999999864432  233211111123555888888889999999999998875552 2110 000   


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----------e
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----------V  199 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------v  199 (368)
                                             .........+  .++.++++..++.|..+|+++|+.+.........          +
T Consensus       111 -----------------------~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~  165 (238)
T PF13360_consen  111 -----------------------GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI  165 (238)
T ss_dssp             -----------------------STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred             -----------------------ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence                                   0001112222  2678888888999999999999998887764422          1


Q ss_pred             EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325          200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      ..-....++.++.+..++.+.-+|+.++..      .  .......+..+ ....+..|++++.++.+..||+++++..
T Consensus       166 ~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~------~--w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  166 NGSPVISDGRVYVSSGDGRVVAVDLATGEK------L--WSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEECCTTEEEEECCTSSEEEEETTTTEE------E--EEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ccceEEECCEEEEEcCCCeEEEEECCCCCE------E--EEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            122223345777777777544449887631      1  11111222221 3456778888889999999999988764

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=1.6e-08  Score=89.41  Aligned_cols=228  Identities=13%  Similarity=0.111  Sum_probs=149.5

Q ss_pred             CCCccccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCE
Q 047325           21 NPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEK   94 (368)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~   94 (368)
                      ..+|.....-+.....++++..|...-+|++|+++  .|+.|+..|.|+++++..+  ......|..+|+-+..+  |..
T Consensus      1078 ~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1078 HGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred             ccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce
Confidence            34565555567777888899999999999999865  9999999999999998755  44678999999999987  665


Q ss_pred             EEEEeC-CC-eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEEE
Q 047325           95 IFTGHQ-DG-KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        95 l~s~~~-dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  171 (368)
                      +++.+. .. ...+|++..--...                                    |+ ..-.++.|+.....-+.
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~------------------------------------Hsf~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPR------------------------------------HSFDEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred             eeeeccccCchHHHhccccccCcc------------------------------------ccccccceeehhhhHHHHHh
Confidence            555443 33 46789886522111                                    22 34467888775444455


Q ss_pred             EeCCCcEEEEEccCCeEEEEee-c---CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          172 ASWDRTFKVWRISDSKCLESVS-A---HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      |.......+||+.++.++.++- +   ....-++..|+|...|+.  .||  .+||.|...      .+..+..... --
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~------aIh~FD~ft~-~~ 1270 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE------AIHRFDQFTD-YG 1270 (1516)
T ss_pred             cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH------HHhhhhhhee-cc
Confidence            5555678999999998776632 1   122336788999884442  455  379998652      2333333321 12


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (368)
                      .-.|+|+|+.++..+     .|||+++.+.+..... -......|...|..++.
T Consensus      1271 ~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~-Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS-LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             cccccCCCceEEeec-----hhhhhHHHHHHhcCcc-ccceEEEeccCccchhh
Confidence            235899999888875     4899998765532222 12222334444555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.5e-06  Score=70.28  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             eeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcC
Q 047325          149 LWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~  225 (368)
                      .+.++...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|..+.  .+.+|..+|.|.+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            4556888999999999766 7888999999999999999999988877 788999998877  99999999999999999


Q ss_pred             CCC
Q 047325          226 QHG  228 (368)
Q Consensus       226 ~~~  228 (368)
                      ...
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=4e-05  Score=65.79  Aligned_cols=113  Identities=15%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             CCCEeEEEEcC-CCCEEEEEe----CCCc----EEEEEccCCeEE----EEeecCCCceEEEEeCCCC-eEEEEcCCCeE
Q 047325          154 SDAVSCMSLDQ-DCGLLYTAS----WDRT----FKVWRISDSKCL----ESVSAHDDAVNSVVSSSEG-LIFTGSADGTV  219 (368)
Q Consensus       154 ~~~v~~~~~~~-~~~~l~~~~----~d~~----i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i  219 (368)
                      .....++.|+- +...+.+..    .+|.    -.+|+....+..    ..+ .....+.+++++|+. .++.|+.||.|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeE
Confidence            33445666765 334444432    2332    346666554321    122 356789999999998 99999999999


Q ss_pred             EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      .+||...+        ........-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       284 iLyD~~~~--------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRG--------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCC--------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99998754        2233344556789999999999999999999999997643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=5.7e-06  Score=73.55  Aligned_cols=188  Identities=16%  Similarity=0.243  Sum_probs=123.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEcCCC-----eEEEEEcCCCCCCccc
Q 047325          161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGSADG-----TVKVWKREQHGKGTKH  233 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~  233 (368)
                      ++++++..++.|+.+|.|.+++ ++.+.++.++++... |..+....+. .|++.+.|+     .+++||++..+.....
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4678888999999999998887 345566788887777 4444444443 777777765     4899999866443322


Q ss_pred             ccc---e----eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC---CccccceeeeccceEEEEE--EeCCCEEEE
Q 047325          234 SLA---Q----TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE---KQLSHGGVLKGHKLAVLCL--AAAGKLVFS  301 (368)
Q Consensus       234 ~~~---~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~--~~~~~~l~~  301 (368)
                      .+.   +    .......++.+++.+.+-+.+++|-.+|.|..+.-+   ..-........-..+|+.+  .-++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            333   1    112246788999999999999999999999998633   1111111222233455444  446665333


Q ss_pred             eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecCCcce
Q 047325          302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSSTSSCA  350 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~  350 (368)
                      ...-..|.+|.+.... .....+..|..+++|.+|++... ++.+++...
T Consensus       189 v~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l  237 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL  237 (933)
T ss_pred             EEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCceE
Confidence            3345579999988654 44566788888999999998766 444444333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.58  E-value=8.6e-05  Score=68.97  Aligned_cols=215  Identities=17%  Similarity=0.141  Sum_probs=131.8

Q ss_pred             CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      ..|.++.|.  ++.++.+..+|.|.+-|.++........                                 -.+.|.++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---------------------------------vd~GI~aa  115 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---------------------------------VDNGISAA  115 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---------------------------------ccCceEEE
Confidence            578888887  6788888889999988777654322111                                 55789999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEc----cCCeE-------------------EEEeecC---------------------C
Q 047325          161 SLDQDCGLLYTASWDRTFKVWRI----SDSKC-------------------LESVSAH---------------------D  196 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~iwd~----~~~~~-------------------~~~~~~~---------------------~  196 (368)
                      +|+||+..++..+..+++.+-+-    -..++                   ...+.+.                     .
T Consensus       116 swS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~  195 (1265)
T KOG1920|consen  116 SWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD  195 (1265)
T ss_pred             eecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc
Confidence            99999999999888777766532    11111                   1112211                     0


Q ss_pred             CceEEEEeCCCC-eEEEE----cCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe---cCCCcE
Q 047325          197 DAVNSVVSSSEG-LIFTG----SAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG---SSDGLV  267 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~----~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i  267 (368)
                      ..=..+.|-.|| ++++.    ..+ +.|++||.+ +.      ....-....+--.+++|-|.|..+++-   ..|+.|
T Consensus       196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~------Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA------LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch------hhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence            112358899999 66652    224 899999987 21      112222233344678999999988874   345679


Q ss_pred             EEEeCCCccccc---eeeeccceEE--EEEEeCCCEEEE---eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          268 NFWEREKQLSHG---GVLKGHKLAV--LCLAAAGKLVFS---GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       268 ~i~d~~~~~~~~---~~~~~~~~~~--~~~~~~~~~l~~---~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      .+|.... ....   .........+  +++..++..|++   ......|++|-+.+.-+...+.+.-.....  +.|+|.
T Consensus       269 vffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~  345 (1265)
T KOG1920|consen  269 VFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV  345 (1265)
T ss_pred             EEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence            9998542 1111   0111122224  455557888887   555556999988776555555554333333  667765


Q ss_pred             C
Q 047325          340 R  340 (368)
Q Consensus       340 ~  340 (368)
                      .
T Consensus       346 ~  346 (1265)
T KOG1920|consen  346 T  346 (1265)
T ss_pred             C
Confidence            4

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.56  E-value=1.1e-05  Score=74.62  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcC----CCC
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKRE----QHG  228 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~----~~~  228 (368)
                      ...|.++.|..+.+.++.+..+|.|.+-|..+.... ....-...|.+++|+||+ .++..+.++++.+-+-.    ...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            368999999999999999999999999998765432 233346789999999999 77777777777655321    000


Q ss_pred             CC-------c------ccccceeecc---------------------ccccEEEEEEcCCCCEEEEe-----cCCCcEEE
Q 047325          229 KG-------T------KHSLAQTLLK---------------------QECAVTALVVSSSRSIVYCG-----SSDGLVNF  269 (368)
Q Consensus       229 ~~-------~------~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~i  269 (368)
                      ..       .      -.+....+.+                     ....=+.+.|-.||+++++.     .....|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            00       0      0000001110                     11123458899999999983     33378999


Q ss_pred             EeCCCccccceeeeccceEEEEEEeCCCEEEEee---CCCeEEEEecCCCce-eeeEeeeccccCeeEEEEecCCeeeec
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS---ADKTICVWRRDGAIH-TCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      ||.+................+++.|.|..+++-.   .|+.|.+|.-+.-.. .....+.....++..++|+.++..||.
T Consensus       227 ~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  227 YDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            9987322222233334455678888999888764   466799997543211 122223334455999999999998875

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3.6e-06  Score=73.12  Aligned_cols=201  Identities=14%  Similarity=0.123  Sum_probs=122.9

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      +...|.--+++..+++++.|+.-|.+.+|+-..++....- .+..+.+..+..+++. ++++|+..|.|.++.++.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            4455666667778889999999999999997665543322 2244555566777777 7888888999999988764332


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---cccceeeeccceEEEEEEeCCCEEEEeeCCCe
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT  307 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  307 (368)
                      ........-..|...|++++|++++..+++|...|.|..-.+...   ......+..-...|+-++.-..+|.+++--..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~  191 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC  191 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence            222222223347889999999999999999999999999887762   11112233345566777764444444443333


Q ss_pred             EEEEecCCCceeeeEeeecccc-CeeEEEEec-----CCeeeecCCcceEEEEE
Q 047325          308 ICVWRRDGAIHTCLSVLTGHTG-PVKCLAVEE-----DRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~h~~-~v~~l~~~~-----~~~~~~~~~~~~~~w~l  355 (368)
                       .+++.+..+...+..-. ..+ .-...+|-|     +...+..+-...++|..
T Consensus       192 -~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWea  243 (726)
T KOG3621|consen  192 -ILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEA  243 (726)
T ss_pred             -heeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCCCceEEe
Confidence             24444433212221111 111 122233433     33456666677777755

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=4.1e-05  Score=64.97  Aligned_cols=216  Identities=13%  Similarity=0.113  Sum_probs=130.7

Q ss_pred             eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      +-+.|+  |.||+|--.-| |.+|-=++-.....+.                                 |. .|.-+.|+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---------------------------------Hp-~Vq~idfS  258 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY---------------------------------HP-GVQFIDFS  258 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc---------------------------------CC-CceeeecC
Confidence            456666  88888887665 6678544333222221                                 33 47789999


Q ss_pred             CCCCEEEEEeC-----------CCcEEEEEccCCeEEEEeecCC--CceE-EEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          164 QDCGLLYTASW-----------DRTFKVWRISDSKCLESVSAHD--DAVN-SVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       164 ~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~--~~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |+.++|++-+.           ...++|||+.+|...+.+....  ..+. -..|+.|+..++.-....|.||+..... 
T Consensus       259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-  337 (698)
T KOG2314|consen  259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-  337 (698)
T ss_pred             CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-
Confidence            99999998753           2579999999999988887632  2333 3489999844444444689999875431 


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEe
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSG  302 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~  302 (368)
                           ++....-.-..|....|+|.++.||-=...     ..+.+-.+.++..+. ...-+...-+.+.+  +|.+|+.-
T Consensus       338 -----lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iR-t~nlfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  338 -----LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR-TKNLFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             -----eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceee-eccceeeeccEEEeccCCcEEEEE
Confidence                 122222234568889999998887753321     235555555544332 22223333334444  57777653


Q ss_pred             ----------eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          303 ----------SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       303 ----------~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                                +.-..+.|+.++... .++..+ .-...|...+|-|.|..++.
T Consensus       412 vdR~tK~~~~g~f~n~eIfrireKd-Ipve~v-elke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  412 VDRHTKSKVKGQFSNLEIFRIREKD-IPVEVV-ELKESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             EEeeccccccceEeeEEEEEeeccC-CCceee-ecchheeeeeeccCCCeEEE
Confidence                      222345666665542 223222 24678999999999986653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=9e-08  Score=84.92  Aligned_cols=180  Identities=14%  Similarity=0.190  Sum_probs=125.1

Q ss_pred             ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC-eEEEE
Q 047325          146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG-TVKVW  222 (368)
Q Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg-~i~i~  222 (368)
                      ....+..|....+|++|+.+.++|+.|+..|.|+++++.+|........|..+|+-+.-+.+| .++ +++... -..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            344566788899999999999999999999999999999999999999999999999999998 444 333333 56789


Q ss_pred             EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-----cceEEEEEEeCCC
Q 047325          223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-----HKLAVLCLAAAGK  297 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~  297 (368)
                      +......     +...+.    .-.++.|+.....-+.|+......+||+++...+...+.+     .......|+|+..
T Consensus      1173 ~~~s~~~-----~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1173 DASSTGG-----PRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccccccC-----cccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            9864211     222222    2456778776555556666678999999987666543332     1234467788887


Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      +++-   ||.  +||++..  ..+..|...+..+ .-.|+|.|..
T Consensus      1244 LIln---dGv--LWDvR~~--~aIh~FD~ft~~~-~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1244 LILN---DGV--LWDVRIP--EAIHRFDQFTDYG-GGGFHPSGNE 1280 (1516)
T ss_pred             eEee---Cce--eeeeccH--HHHhhhhhheecc-cccccCCCce
Confidence            7763   554  7988765  4455554433211 2257777763

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.45  E-value=0.00033  Score=54.02  Aligned_cols=138  Identities=18%  Similarity=0.194  Sum_probs=90.7

Q ss_pred             CEEEEccCCCcEEEEcCCcceecccC-CCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           55 DLLYTGSDSKNIRVWKNLKEFCGFKA-SSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      .+++.|+..+.+.--|...+....+. -...+.+-+. -|++++.|+..|.+.+.+.+++++.......           
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-----------   92 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-----------   92 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-----------
Confidence            36777777777766666544332221 1223333333 3999999999999999999999765544321           


Q ss_pred             cCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CCeE
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EGLI  210 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l  210 (368)
                                            +.|. .....+++..+..++.|++.+..|.++..++...+.......+-+..+ ++.|
T Consensus        93 ----------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl  150 (354)
T KOG4649|consen   93 ----------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL  150 (354)
T ss_pred             ----------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence                                  1221 234567889999999999999999999999888765444333444555 4466


Q ss_pred             EEEcCCCeEEEEEcC
Q 047325          211 FTGSADGTVKVWKRE  225 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~  225 (368)
                      +.+...|.+.--..+
T Consensus       151 y~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  151 YAAITAGAVLAVTKN  165 (354)
T ss_pred             EEEeccceEEEEccC
Confidence            666666666555544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.45  E-value=0.00032  Score=62.37  Aligned_cols=245  Identities=14%  Similarity=0.143  Sum_probs=126.8

Q ss_pred             CEEEEccCCCcEEEEcCCcceec--ccCCCC------CeeEEEEeCCEEEEEe---------CCCeEEEEeecCCCcccc
Q 047325           55 DLLYTGSDSKNIRVWKNLKEFCG--FKASSG------LVKAIVISGEKIFTGH---------QDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~------~v~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~  117 (368)
                      +.++.++.+|.|+-+|..+....  +.....      ...+..+.+..++.++         .+|.+..+|.++++....
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            56666677788887776643322  221111      0112223345555554         357788888888876655


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCE-eEEEEcCCCCEEEEEeCCC------------------c
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAV-SCMSLDQDCGLLYTASWDR------------------T  177 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~~~~~d~------------------~  177 (368)
                      ..........  ..          ........+ .+. ..| ...++.+.+..++.++.++                  .
T Consensus       191 ~~~~~~~~~~--~~----------~~~~~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~  257 (488)
T cd00216         191 FYTTEPDPNA--FP----------TWGPDRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS  257 (488)
T ss_pred             eeccCCCcCC--CC----------CCCCCccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence            4432110000  00          000000000 011 111 1245555566777776655                  7


Q ss_pred             EEEEEccCCeEEEEeecCCCceE--------EEE-eC-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325          178 FKVWRISDSKCLESVSAHDDAVN--------SVV-SS-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE  243 (368)
Q Consensus       178 i~iwd~~~~~~~~~~~~~~~~v~--------~~~-~~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  243 (368)
                      |.-+|+.+|+.+-.++.-.....        .+. .. -++    .+++++.+|.+...|.++++........       
T Consensus       258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------  330 (488)
T cd00216         258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------  330 (488)
T ss_pred             EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------
Confidence            99999999998877652111110        010 00 122    5788889999999999887542211110       


Q ss_pred             ccEEEEEEcCCCCEEEEe------------------cCCCcEEEEeCCCccccceeeec-c--------ceEEEEEEeCC
Q 047325          244 CAVTALVVSSSRSIVYCG------------------SSDGLVNFWEREKQLSHGGVLKG-H--------KLAVLCLAAAG  296 (368)
Q Consensus       244 ~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~-~--------~~~~~~~~~~~  296 (368)
                        ...+..+|  ..++.+                  ..+|.+.-.|..+++........ +        ......+...+
T Consensus       331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g  406 (488)
T cd00216         331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG  406 (488)
T ss_pred             --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence              01122233  222221                  23567777888777655433322 0        00111233467


Q ss_pred             CEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          297 KLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      .+|++++.||.|+.+|.+++  +.+.+.+
T Consensus       407 ~~v~~g~~dG~l~ald~~tG--~~lW~~~  433 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTG--KELWKFR  433 (488)
T ss_pred             CeEEEECCCCeEEEEECCCC--ceeeEEE
Confidence            88999999999999998877  5555544

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=0.00084  Score=57.99  Aligned_cols=101  Identities=10%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--
Q 047325          240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI--  317 (368)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--  317 (368)
                      ...+..+.+++++|+...|+.|+.||.|.+||...+... .....-.....+++|+|.++++|+..|.+.+||+....  
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            356778999999999999999999999999998765433 12222334457888899999999999999999975321  


Q ss_pred             ---------eeeeEee---eccccCeeEEEEecCCe
Q 047325          318 ---------HTCLSVL---TGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       318 ---------~~~~~~~---~~h~~~v~~l~~~~~~~  341 (368)
                               ......+   -.+...+..+.|.+...
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~  370 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ  370 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence                     1111122   23455677888885544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.43  E-value=0.00014  Score=57.51  Aligned_cols=189  Identities=12%  Similarity=0.147  Sum_probs=102.6

Q ss_pred             ecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          152 RHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      +-.+.+..++|+|+.+ ++++....+.|..++. +|+.+..+.-.. +..-.+++..++ ++++--.++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            3556699999999755 5566667788888886 578888776443 557888888888 44444458999999995443


Q ss_pred             CCcccccceee-----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC---ccccc-eee--------eccceEEEE
Q 047325          229 KGTKHSLAQTL-----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHG-GVL--------KGHKLAVLC  291 (368)
Q Consensus       229 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~-~~~--------~~~~~~~~~  291 (368)
                      ..........+     ..+...+..++|+|.++.|+.+-+..-..+|.++.   ..... ...        ......-++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence            21111111111     13446689999999888888887776667776653   11110 000        011122244


Q ss_pred             EEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeec-c------ccCeeEEEEecCCee
Q 047325          292 LAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-H------TGPVKCLAVEEDRDS  342 (368)
Q Consensus       292 ~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h------~~~v~~l~~~~~~~~  342 (368)
                      +.|. +++++....+..|..+|.... ......+.. .      -...-.|+|.++|.+
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELDRQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             EcCCCCeEEEEECCCCeEEEECCCCC-EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence            5553 667778888888999985433 222223322 1      135789999999984

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=4.4e-05  Score=62.17  Aligned_cols=76  Identities=21%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeec
Q 047325           39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~  110 (368)
                      -+.+|...|..++|++.   ++..++.+.+|+|.|+++.  ...+..+ ..+.+++|+   .++++.|-..|.|.|||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            46677888999999855   7889999999999999864  4456666 789999998   6689999999999999998


Q ss_pred             CCCcc
Q 047325          111 PKNQS  115 (368)
Q Consensus       111 ~~~~~  115 (368)
                      ..+..
T Consensus       267 ~~~~~  271 (463)
T KOG1645|consen  267 QPEGP  271 (463)
T ss_pred             CCCch
Confidence            77643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.40  E-value=1.3e-07  Score=80.86  Aligned_cols=194  Identities=18%  Similarity=0.219  Sum_probs=120.9

Q ss_pred             CCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           83 GLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        83 ~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ..+.|++..    ...++.|..+|.|.+-.+....-..                              .....++....+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs------------------------------~E~tp~~ar~Ct  106 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS------------------------------AEVTPGYARPCT  106 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccc------------------------------ceeccccccccc
Confidence            345566654    2367888999999998876553220                              011223788899


Q ss_pred             EEEEcC-CCCEEEEEe----CCCcEEEEEccCC--eEEE--Eeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          159 CMSLDQ-DCGLLYTAS----WDRTFKVWRISDS--KCLE--SVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       159 ~~~~~~-~~~~l~~~~----~d~~i~iwd~~~~--~~~~--~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      +++|++ |.+.||+|-    .|..+.|||+.++  .+..  .+.+ -.....+++|..+. .+.+|.....+.++|+|..
T Consensus       107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            999998 556677663    3668999999876  2221  1222 23345678888777 7888888889999999854


Q ss_pred             CCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEe-CCCccccceeeeccc----eEEEEE--EeC-CCE
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWE-REKQLSHGGVLKGHK----LAVLCL--AAA-GKL  298 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~~~~~--~~~-~~~  298 (368)
                             ......-....+..+...| .++++++-. ||.|.+|| .++-+.+.......+    ..+..+  .|- ..+
T Consensus       187 -------~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  187 -------LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             -------hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence                   2222222334566777888 777887665 99999999 443332222221111    124444  442 334


Q ss_pred             EEEee-CCCeEEEEecC
Q 047325          299 VFSGS-ADKTICVWRRD  314 (368)
Q Consensus       299 l~~~~-~dg~i~iw~~~  314 (368)
                      +++.. ..++|+.+++.
T Consensus       259 la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhccCcceEEEeccc
Confidence            55555 45789999874

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.0015  Score=58.11  Aligned_cols=200  Identities=9%  Similarity=0.090  Sum_probs=109.6

Q ss_pred             ecCCEEEEccCCCcEEEEcCCcceec--ccCCCC------Ce--eEEEEeC-CEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           52 ASKDLLYTGSDSKNIRVWKNLKEFCG--FKASSG------LV--KAIVISG-EKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        52 ~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~------~v--~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      +.++.++.++.++.+.-.|..+....  +.....      .+  ..+...+ +.++.++.+|.|..+|.++++.......
T Consensus        59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            34567777888899999987644222  211111      11  1223335 8899999999999999999987666544


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe---------CCCcEEEEEccCCeEEEE
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---------WDRTFKVWRISDSKCLES  191 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~  191 (368)
                      .......                      +.-...    ..+.  +..++.++         .++.+..+|..+|+.+-.
T Consensus       139 ~~~~~~~----------------------~~i~ss----P~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         139 NDQVPPG----------------------YTMTGA----PTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CCCcCcc----------------------eEecCC----CEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            3210000                      000000    1111  13344443         467899999999998877


Q ss_pred             eecCCCc--------------------e-EEEEeCC-CCeEEEEcCCC------------------eEEEEEcCCCCCCc
Q 047325          192 VSAHDDA--------------------V-NSVVSSS-EGLIFTGSADG------------------TVKVWKREQHGKGT  231 (368)
Q Consensus       192 ~~~~~~~--------------------v-~~~~~~~-~~~l~~~~~dg------------------~i~i~d~~~~~~~~  231 (368)
                      ++.....                    + ...++.+ .+.++.++.++                  .|.-+|.++++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            6542110                    1 0123333 34777777665                  68888887765422


Q ss_pred             cccccee----eccccccE-EEEEEcCCCC---EEEEecCCCcEEEEeCCCccccce
Q 047325          232 KHSLAQT----LLKQECAV-TALVVSSSRS---IVYCGSSDGLVNFWEREKQLSHGG  280 (368)
Q Consensus       232 ~~~~~~~----~~~~~~~i-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~  280 (368)
                      .......    ......++ ..+. .-++.   .++.++.+|.+..+|.++++....
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            2111100    00111111 1111 01232   678888999999999999877644

The alignment model contains an 8-bladed beta-propeller.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.29  E-value=0.0012  Score=53.19  Aligned_cols=209  Identities=13%  Similarity=0.168  Sum_probs=124.0

Q ss_pred             CCEEEEEeCCCe-EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325           92 GEKIFTGHQDGK-IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY  170 (368)
Q Consensus        92 ~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  170 (368)
                      +..++.+-.-|+ ..+||..+++.......                        ...+.|.||      -.|++||++|+
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------~~gRHFyGH------g~fs~dG~~Ly   66 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------PPGRHFYGH------GVFSPDGRLLY   66 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------CCCCEEecC------EEEcCCCCEEE
Confidence            345555555554 55788877765433322                        223445556      67999999999


Q ss_pred             EEeC-----CCcEEEEEcc-CCeEEEEeecCCCceEEEEeCCCC-eEEEEcC------------------CCeEEEEEcC
Q 047325          171 TASW-----DRTFKVWRIS-DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA------------------DGTVKVWKRE  225 (368)
Q Consensus       171 ~~~~-----d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~------------------dg~i~i~d~~  225 (368)
                      +.-.     .|.|-+||.. +.+.+.++..+.-....+.+.||+ .|+++..                  +..+...|.+
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            8743     5789999998 678888888887777788899999 6666531                  2223334444


Q ss_pred             CCCCCccccccee--e--ccccccEEEEEEcCCCCEEEEecCCCc-------EEEEeCCCcccccee------eeccceE
Q 047325          226 QHGKGTKHSLAQT--L--LKQECAVTALVVSSSRSIVYCGSSDGL-------VNFWEREKQLSHGGV------LKGHKLA  288 (368)
Q Consensus       226 ~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~------~~~~~~~  288 (368)
                      ++.      .+.+  +  ..|+..|.-+++.++|..++..-..|.       |.+++..........      ...+-..
T Consensus       147 sG~------ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~g  220 (305)
T PF07433_consen  147 SGA------LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIG  220 (305)
T ss_pred             CCc------eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceE
Confidence            332      1222  2  336678999999998876665544332       334443321111000      0112333


Q ss_pred             EEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          289 VLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       289 ~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .++++.++.++++ +=.-|.+.+||..++  ..+....  -.-+-.++-.+++
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg--~~~~~~~--l~D~cGva~~~~~  269 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATG--RLLGSVP--LPDACGVAPTDDG  269 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCC--CEeeccc--cCceeeeeecCCc
Confidence            4556667776654 446788999988877  3333321  2235566666666

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.27  E-value=6.8e-07  Score=76.66  Aligned_cols=206  Identities=13%  Similarity=0.150  Sum_probs=128.1

Q ss_pred             CCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC--eEEEEc----CCCeEEEEE
Q 047325          154 SDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG--LIFTGS----ADGTVKVWK  223 (368)
Q Consensus       154 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~----~dg~i~i~d  223 (368)
                      ...+.|+++.-  +...+++|..+|.|-+-.++...-  -...+++..+.++++|++-.  .|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566776654  335788999999999988765432  23445677889999999875  777764    367899999


Q ss_pred             cCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEE
Q 047325          224 REQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFS  301 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  301 (368)
                      +...-....  ....+. +......+++|..+.+.+.+|.....+.++|++........+......-..+.| .+.++++
T Consensus       136 i~s~ltvPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence            976511000  011111 133445688999999999999999999999998443332233222222355666 6788877


Q ss_pred             eeCCCeEEEEecCCCceeeeEeeecccc----CeeEEEEecCCeee-ecC---CcceEEEEEeeCCccc
Q 047325          302 GSADKTICVWRRDGAIHTCLSVLTGHTG----PVKCLAVEEDRDSS-SST---SSCAQRWIVYSGSLDK  362 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~-~~~---~~~~~~w~l~sg~~D~  362 (368)
                      -. ||.|.+||.......++..+.....    .+..++|+|...-+ ++.   ++.++.+.+-.-+.++
T Consensus       214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~  281 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG  281 (783)
T ss_pred             cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence            66 9999999943222233333332222    48999999986532 222   2334554444444333

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.25  E-value=0.00032  Score=61.95  Aligned_cols=129  Identities=15%  Similarity=0.037  Sum_probs=75.1

Q ss_pred             CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccc------------eeee
Q 047325          217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHG------------GVLK  283 (368)
Q Consensus       217 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~------------~~~~  283 (368)
                      +.|.+.|.+...+. . ........-......+.++|||+++++++ .++++.++|+++.+...            ....
T Consensus       296 n~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        296 SKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            45667776641000 0 01222233445577899999999887765 58899999998754311            1111


Q ss_pred             ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--------eeeeEeeeccccCeeE-----EEEecCCeeeecCC
Q 047325          284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI--------HTCLSVLTGHTGPVKC-----LAVEEDRDSSSSTS  347 (368)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~h~~~v~~-----l~~~~~~~~~~~~~  347 (368)
                      +-...-+.|..+|....+-.-|..|..|+++...        ...+..+.-|-++-.-     =.-.|||+++.+.+
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            1112236677778888888899999999987520        1334444444443222     22367787766554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.22  E-value=0.0017  Score=52.35  Aligned_cols=180  Identities=14%  Similarity=0.184  Sum_probs=104.7

Q ss_pred             CCEEEEEe-----CCCeEEEEeecCC-CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           92 GEKIFTGH-----QDGKIRVWKISPK-NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        92 ~~~l~s~~-----~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      |++|++.-     ..|.|-|||.... +....                                |..|.-.-..+.+.||
T Consensus        62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E--------------------------------~~s~GIGPHel~l~pD  109 (305)
T PF07433_consen   62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGE--------------------------------FPSHGIGPHELLLMPD  109 (305)
T ss_pred             CCEEEEeccccCCCcEEEEEEECcCCcEEEeE--------------------------------ecCCCcChhhEEEcCC
Confidence            78888764     3578999999832 21111                                1113333345667777


Q ss_pred             CCEEEEEe------------------CCCcEEEEEccCCeEEEEee----cCCCceEEEEeCCCCeEEEEcC-CC-----
Q 047325          166 CGLLYTAS------------------WDRTFKVWRISDSKCLESVS----AHDDAVNSVVSSSEGLIFTGSA-DG-----  217 (368)
Q Consensus       166 ~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~-dg-----  217 (368)
                      ++.|+++-                  .+..+...|..+|+.+....    .|...|..+++.++|.++.+.. .|     
T Consensus       110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~  189 (305)
T PF07433_consen  110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA  189 (305)
T ss_pred             CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence            76666652                  24466777888888877633    3677899999999996555543 22     


Q ss_pred             --eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEEEe
Q 047325          218 --TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA  294 (368)
Q Consensus       218 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  294 (368)
                        -|-+++....-. ...............+-+|++++++..+++.+ ..+.+.+||..++.......   -..++.+.+
T Consensus       190 ~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~  265 (305)
T PF07433_consen  190 PPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAP  265 (305)
T ss_pred             CCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeee
Confidence              133333322100 00001111233456789999999998775544 67789999999876653222   122344555


Q ss_pred             CC-CEEEEeeCCCeE
Q 047325          295 AG-KLVFSGSADKTI  308 (368)
Q Consensus       295 ~~-~~l~~~~~dg~i  308 (368)
                      .. .++++. ..|.+
T Consensus       266 ~~~~f~~ss-G~G~~  279 (305)
T PF07433_consen  266 TDDGFLVSS-GQGQL  279 (305)
T ss_pred             cCCceEEeC-CCccE
Confidence            32 345544 44553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.21  E-value=0.00021  Score=60.01  Aligned_cols=177  Identities=14%  Similarity=0.160  Sum_probs=106.7

Q ss_pred             CcEEEEEccCCeEEEEeecC-CCceEEE---EeCC-----CCeEEEEcC----------CCeEEEEEcCCC-CCCccccc
Q 047325          176 RTFKVWRISDSKCLESVSAH-DDAVNSV---VSSS-----EGLIFTGSA----------DGTVKVWKREQH-GKGTKHSL  235 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~-~~~v~~~---~~~~-----~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~~~  235 (368)
                      +.|++.|..+.+.+..+.-. ...+.++   .+..     ..++++|+.          .|.|.++++... ....+...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            46888998888877666532 3344444   3443     227776653          289999999873 11111122


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      . ......++|++++-- ++. |+++. .+.|.+|++.... ............+.++...+++++.|..-..+.++.++
T Consensus        82 i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 I-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             E-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             E-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            2 223456889988866 344 44443 4789999998766 33333334455778888889999999998899988766


Q ss_pred             CCceeeeEee--eccccCeeEEEEecCCeeeecCCcceEEEEEee
Q 047325          315 GAIHTCLSVL--TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYS  357 (368)
Q Consensus       315 ~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s  357 (368)
                      ..... +..+  ......++++.|-+++..++.+|..+.++.+--
T Consensus       158 ~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  158 EENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             TTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             ccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            43221 2222  223456889999866666666766666554443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.17  E-value=0.00052  Score=59.40  Aligned_cols=225  Identities=12%  Similarity=0.059  Sum_probs=108.4

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccc
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      +....-....+.++|+  +++. +.||...|+.........   .+.-....|. .+.+++-...++|.++.--......
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            3334445677888765  5555 667888888743222211   2334456666 5677777778889996322221111


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD  196 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  196 (368)
                      ...                                 ....+..+-.   |.+|...+. +.|.+||..+++.+..+... 
T Consensus       104 ~i~---------------------------------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-  145 (443)
T PF04053_consen  104 SIK---------------------------------LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-  145 (443)
T ss_dssp             -------------------------------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--
T ss_pred             EEc---------------------------------CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-
Confidence            111                                 1112223322   777777765 48999999999999999743 


Q ss_pred             CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC------CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQH------GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                       +|..+.|++++ +++..+ +..+.+++.+..      ..+.. ............|.+.+|..+  .++-.+.. .++.
T Consensus       146 -~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e-~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  146 -AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEEGVE-DAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             -E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-G-GGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             -CCcEEEEECCCCEEEEEe-CCeEEEEEecchhcccccccCch-hceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence             48999999999 665555 447777775422      00000 011222222567888888755  44444443 5555


Q ss_pred             EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                        +..+....-.....+..++.+.+..+.++....|+.+..+.++
T Consensus       220 --l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  220 --LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             --EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             --EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence              2223222111123344556666666788888888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.16  E-value=0.0021  Score=55.00  Aligned_cols=229  Identities=14%  Similarity=0.172  Sum_probs=119.4

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCc---------------------------c------------------eecc
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLK---------------------------E------------------FCGF   78 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~---------------------------~------------------~~~~   78 (368)
                      .|+.+.|.++  -|++|...|.|.||....                           .                  ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4778888766  888899999999985210                           0                  0012


Q ss_pred             cCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           79 KASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        79 ~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      ....++|++++.+ =.+++.|..+|.+.|.|++.............                        ..-......|
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~------------------------~~~~~~~~~v  138 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRES------------------------FLSKSSSSYV  138 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------T-SS----E
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccc------------------------ccccccccCe
Confidence            3346789999997 67999999999999999977665443222110                        0000134567


Q ss_pred             eEEEEcC-----CC---CEEEEEeCCCcEEEEEcc--C-Ce----EEEEeecCCCceEEEE-eCCC--------------
Q 047325          158 SCMSLDQ-----DC---GLLYTASWDRTFKVWRIS--D-SK----CLESVSAHDDAVNSVV-SSSE--------------  207 (368)
Q Consensus       158 ~~~~~~~-----~~---~~l~~~~~d~~i~iwd~~--~-~~----~~~~~~~~~~~v~~~~-~~~~--------------  207 (368)
                      +++.|..     |+   -.+++|...|.+.+|.+.  . +.    .......+.++|..+. +..+              
T Consensus       139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~  218 (395)
T PF08596_consen  139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG  218 (395)
T ss_dssp             EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred             eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence            7777752     33   478999999999999774  1 21    1122223445555443 2111              


Q ss_pred             ---C----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCc
Q 047325          208 ---G----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS-----SSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       208 ---~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                         +    .++....+..++++..-..+.      .............+.+-     ..+..|++-..+|.+++|.+..-
T Consensus       219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  219 LSKGISIPGYVVVVSESDIRVFKPPKSKG------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             GGGT----EEEEEE-SSEEEEE-TT---E------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             cccCCCcCcEEEEEcccceEEEeCCCCcc------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence               1    244445577899998865421      22222222223334442     35668888899999999999875


Q ss_pred             cccceeeecc-----ceEEEEEEeCCCEEEEeeC
Q 047325          276 LSHGGVLKGH-----KLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       276 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~  304 (368)
                      +.+.......     ...-.++..+|+.++-.+.
T Consensus       293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             hHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            4443222211     1112556777776655543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.13  E-value=0.00014  Score=62.66  Aligned_cols=186  Identities=13%  Similarity=0.038  Sum_probs=108.6

Q ss_pred             cCCCEeEEEEcCCCCEEEEEe---CC-CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeE--EEEEc
Q 047325          153 HSDAVSCMSLDQDCGLLYTAS---WD-RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTV--KVWKR  224 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i--~i~d~  224 (368)
                      -...+..-+|+|++..++-..   .. ..+.++|+.+++....+. ..+.-..-.|+|||  .+++...||..  +++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            344566678888887654442   22 358999999887655544 22333456899999  66666777764  55565


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (368)
                      ....       ...+....+.-..=.|+|+|+.++-.+ ..|  .|.+++.+................-.++|||++|+.
T Consensus       270 ~~~~-------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         270 DGKN-------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             CCCc-------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            5432       122333333333667999999877654 344  466667666544333333333335678899998887


Q ss_pred             eeC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325          302 GSA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       302 ~~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      .+. +|.  |.+.++.+...  .+.+ .+......-.|.+++..+...++.
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~--~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGK--IRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EeccCCceeeEEeccCCCCc--EEEc-cccccCCCCCcCCCCceEEEeccC
Confidence            764 344  55555544421  2222 233344455677777766554433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.07  E-value=0.001  Score=44.54  Aligned_cols=100  Identities=25%  Similarity=0.303  Sum_probs=68.7

Q ss_pred             EeEEEEcC---C-CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          157 VSCMSLDQ---D-CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       157 v~~~~~~~---~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      |+++++..   + .+.|++|+.|..|++|+-  .+.+.++.. ...|.++.-...+.++.+..+|+|-+|+-...     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence            55666544   3 258999999999999984  466777764 45678888777789999999999999986431     


Q ss_pred             cccceeeccccccEEEEEEcC-CC---CEEEEecCCCcEE
Q 047325          233 HSLAQTLLKQECAVTALVVSS-SR---SIVYCGSSDGLVN  268 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~  268 (368)
                         .-..+ .+..+.++++.. ++   ..|++|-.+|.|-
T Consensus        74 ---lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 ---LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               11111 222355555443 32   3788898888774

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.05  E-value=0.0025  Score=55.31  Aligned_cols=189  Identities=13%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEE-EcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVW-KREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~  231 (368)
                      .......+.++|+++.+++++ ||.-.|+.....+....     +.-..+.|.+.+.+++-...+.|.++ ++...    
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~----  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE----  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-----
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccc----
Confidence            444578899999999998865 68888888544443322     33456788887788888888999996 33221    


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVW  311 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  311 (368)
                         ....+. ....+..+-.   |..|...+.+ .|.+||.+++.... ........-+-+++++++++..+.+ .+.|+
T Consensus       101 ---~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-~i~v~~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  101 ---VVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-RIDVSAVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             ---TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-EESS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             ---cceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceee-EEecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence               111111 1112344433   7777776554 79999999876653 3332323445667788999988866 67787


Q ss_pred             ecCCC---------ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccc
Q 047325          312 RRDGA---------IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDD  365 (368)
Q Consensus       312 ~~~~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~  365 (368)
                      +.+..         -...+..+..-...|.+..|..+ -++-+..+  ++-+ ..+|+-++|+
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkY-l~~Ge~~~i~  229 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKY-LVNGETGIIA  229 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEE-EETTEEEEEE
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEE-EEcCCcceEE
Confidence            65432         00122333223568999999988 44444444  4434 4555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.05  E-value=0.00054  Score=45.87  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=47.8

Q ss_pred             EEEEEe---cCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEee
Q 047325           47 IYSLAA---SKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        47 i~~~~~---~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~  109 (368)
                      |++|++   +++   .|++|+.|..||+|+-...+...... ..|+++... +.+++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            455554   433   89999999999999988776666654 456666655 889999999999999975

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=0.0033  Score=48.77  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=87.5

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      ..+++.|+..+.+..-|..+++.......+                                 .++.+-+.- -|++++.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~   68 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL   68 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence            467888888999988888888765544432                                 222222222 3667999


Q ss_pred             EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325          172 ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  250 (368)
                      |+..|.+++.+..+|.....+...+.--......+++ .+..|+.|+..+..|.+...      ++...+-..+...+-+
T Consensus        69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~------cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG------CVYKSKCGGGTFVSPV  142 (354)
T ss_pred             EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc------eEEecccCCceeccce
Confidence            9999999999999998887776433221223345555 99999999999999998653      3333332333333344


Q ss_pred             EcCCCCEEEEecCCCcEEE
Q 047325          251 VSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       251 ~~~~~~~l~~~~~dg~i~i  269 (368)
                      ..|....|..+...|.+.-
T Consensus       143 i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen  143 IAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             ecCCCceEEEEeccceEEE
Confidence            5553333444444454433

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.03  E-value=0.0013  Score=56.80  Aligned_cols=167  Identities=14%  Similarity=0.184  Sum_probs=91.1

Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc---ceeeccccccEEEEEEcC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL---AQTLLKQECAVTALVVSS  253 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~  253 (368)
                      .|.+|+. .|+.+..+.-..+.+.++.|..+..|++...||.+++||+....   ....   .....-.+..+....+..
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence            5999986 67777777766689999999998888888999999999986331   0111   111111122233333433


Q ss_pred             CCCEEEEecCCCcEEEEeC-CCccccce--eee-----cc--ce--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          254 SRSIVYCGSSDGLVNFWER-EKQLSHGG--VLK-----GH--KL--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~-----~~--~~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                      +|  ++.-..++.+.+..- ........  ...     .+  ..  .+..+..+....+....++.+.+-+-...  .  
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--~--  211 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--K--  211 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--c--
Confidence            55  333334455554432 21111100  000     00  00  11223334444444444555553332211  0  


Q ss_pred             EeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          322 SVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       322 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                       .+. ..+++..|+.||+++++|.-..++.+|.+
T Consensus       212 -~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~  243 (410)
T PF04841_consen  212 -QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVV  243 (410)
T ss_pred             -ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence             111 24689999999999999887777777754

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.02  E-value=0.00086  Score=61.55  Aligned_cols=137  Identities=9%  Similarity=0.154  Sum_probs=86.7

Q ss_pred             cCCCcEEEEcCCc--ceecccCCCCC-eeEEEEe-------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           61 SDSKNIRVWKNLK--EFCGFKASSGL-VKAIVIS-------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        61 ~~dg~i~iw~~~~--~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      .....|+-.|++.  .+..+..|... |..++..       +...+.|-.+..+..||.+-..........         
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~---------  571 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS---------  571 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc---------
Confidence            3344555555553  24455555433 6666654       345667777888888888743211100000         


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeE
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLI  210 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l  210 (368)
                                       ..+ .......|++-..+| +||+|+.+|.|++||-...+....+++-..+|..|..+.||..
T Consensus       572 -----------------k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  572 -----------------KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             -----------------ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence                             000 144567788887776 7999999999999995433444556677899999999999944


Q ss_pred             EEEcCCCeEEEEEcC
Q 047325          211 FTGSADGTVKVWKRE  225 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~  225 (368)
                      +.+..+..|.+++..
T Consensus       633 ilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  633 ILATCKTYLLLIDTL  647 (794)
T ss_pred             EEEeecceEEEEEEe
Confidence            445556678888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.97  E-value=0.0025  Score=53.48  Aligned_cols=141  Identities=14%  Similarity=0.152  Sum_probs=83.7

Q ss_pred             CCEEEEEeC----------CCcEEEEEccCC----eEEEEe--ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          166 CGLLYTASW----------DRTFKVWRISDS----KCLESV--SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       166 ~~~l~~~~~----------d~~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      ..+|++|..          .|.|.++++...    ..+..+  ...+++|++++-- ++.|+++. ++.|.+|++.....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKT  119 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCccc
Confidence            457777753          288999999884    122221  2347889999766 44544433 58999999986531


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC--ccccceeeeccceEEEEEEe--CCCEEEEeeCC
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK--QLSHGGVLKGHKLAVLCLAA--AGKLVFSGSAD  305 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d  305 (368)
                         . ...........+.++...  +++++.|.....+.++..+.  ..............+++..+  +++.++++..+
T Consensus       120 ---l-~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  120 ---L-LKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             ---E-EEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             ---c-hhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence               1 111112223356666554  56999999888888875443  21111112223344555443  66799999999


Q ss_pred             CeEEEEecC
Q 047325          306 KTICVWRRD  314 (368)
Q Consensus       306 g~i~iw~~~  314 (368)
                      |.+.++..+
T Consensus       194 gnl~~l~~~  202 (321)
T PF03178_consen  194 GNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEE-
T ss_pred             CeEEEEEEC
Confidence            999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.95  E-value=0.01  Score=51.45  Aligned_cols=49  Identities=16%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             cEEEEcCCc-ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCC
Q 047325           65 NIRVWKNLK-EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        65 ~i~iw~~~~-~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      .|+||+... .+....-..+.+.++.|. .+.|+.-..||.++++|+....
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            499998764 344444344899999998 7789999999999999987443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0012  Score=59.61  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCC
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~  226 (368)
                      .+++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.+.+|....
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            35679999988888888888999999988877777777899999999999999 999999999999998764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.91  E-value=0.00044  Score=63.36  Aligned_cols=137  Identities=15%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCCc-eEEEEeCC------CCeEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDDA-VNSVVSSS------EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA  245 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  245 (368)
                      .....|+-.|++.|+.+..+..+... |..++-..      ....+.|-.+..+..||.|..+....... .........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCC
Confidence            34578999999999999999987654 66664321      12667888899999999997542000000 111123445


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325          246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..|++-..+| +||+|+.+|.|++||-- +......+.+-..+|  ++++.||++|++.+ +..|.+++.
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            7777777665 78999999999999943 334444555545555  55667999988766 456777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00011  Score=63.53  Aligned_cols=95  Identities=18%  Similarity=0.276  Sum_probs=76.3

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE-EEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      -...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.+++-|...++ +++|.||| .|++|-.||+|++.|...+.. 
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-   96 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-   96 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc-
Confidence            34567889999999999999999999999987 788888887777777 99999999 999999999999999987654 


Q ss_pred             cccccceeeccccccEEEEEEcC
Q 047325          231 TKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                          ...........|.++-|.+
T Consensus        97 ----l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 ----LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ----eeccccccccchheeeccc
Confidence                1221223445677777763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=5.3e-05  Score=57.15  Aligned_cols=125  Identities=18%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA  288 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  288 (368)
                      .+...+.||.|+-++++....     ..+....+...   .....-+..+++|+.+|.|++|.....-........-...
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~-----s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~  103 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKE-----SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES  103 (238)
T ss_pred             hhccccCCcccccchhhhhhh-----hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence            455567788888888874321     11111112221   1111235679999999999999876211111122222233


Q ss_pred             EEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-cCeeEEEEecCCeee
Q 047325          289 VLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-GPVKCLAVEEDRDSS  343 (368)
Q Consensus       289 ~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~  343 (368)
                      +.+.-|   ++.+.+++..||.|+.|++...  +.+.....|. .++..+..+..++++
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~~e~~ivv~sd~~i  160 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFESGEELIVVGSDEFL  160 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCCcceeEEecCCceE
Confidence            444444   3558899999999999988765  5555555666 566666666666643

>PHA02713 hypothetical protein; Provisional

Probab=97.78  E-value=0.0041  Score=56.26  Aligned_cols=150  Identities=8%  Similarity=0.029  Sum_probs=78.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEEcCC--------------------
Q 047325          165 DCGLLYTASWDR-----TFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTGSAD--------------------  216 (368)
Q Consensus       165 ~~~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------------------  216 (368)
                      +++..+.||.++     .+..||..+.+=  +..+.........+. . ++ ..+.|+.+                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-L-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-E-CCEEEEEeCCCcccccccccccccccccccc
Confidence            466777777654     478899876532  222221111111222 2 45 55666654                    


Q ss_pred             ---CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC------CcEEEEeCCC-c-cccceeeecc
Q 047325          217 ---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD------GLVNFWEREK-Q-LSHGGVLKGH  285 (368)
Q Consensus       217 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~  285 (368)
                         ..+..||.++..=    .....+....... +++ .-++++.+.|+.+      ..+..||.++ . ......+...
T Consensus       429 ~~~~~ve~YDP~td~W----~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        429 HSSNKVIRYDTVNNIW----ETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             cccceEEEECCCCCeE----eecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence               2477788765421    1111111111111 122 2246666667654      2467899886 3 2222223323


Q ss_pred             ceEEEEEEeCCCEEEEeeCCC--eEEEEecCCCceeeeE
Q 047325          286 KLAVLCLAAAGKLVFSGSADK--TICVWRRDGAIHTCLS  322 (368)
Q Consensus       286 ~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~  322 (368)
                      ....-....++++.++|+.||  .+..||..+.++..+.
T Consensus       503 r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        503 LSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             cccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence            333344456899999999888  7888888777655443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.77  E-value=0.013  Score=48.09  Aligned_cols=200  Identities=15%  Similarity=0.145  Sum_probs=113.2

Q ss_pred             EEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          159 CMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      .++++.+++++++..  --..|.+.|+..++.+.++.-..  +..+--.++..+.+-+.||.+.-..+...++.. ....
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t  175 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKST  175 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe-Eeec
Confidence            467888999887764  34579999999999998887432  223322233367788889999999998665522 1111


Q ss_pred             eeeccccccE-EEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-e------------eeeccceEEEEEEeCCCEEEEe
Q 047325          237 QTLLKQECAV-TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-G------------VLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       237 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                      ..+.....++ ..-++...+..++--+.+|.|+-.|+....... .            ....-.-...++++..+.|++-
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence            2222222222 233344455555556788888888876432110 0            0111122345666555444442


Q ss_pred             e--------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-ee-e-cC-CcceEEEEEeeCCccc
Q 047325          303 S--------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SS-S-ST-SSCAQRWIVYSGSLDK  362 (368)
Q Consensus       303 ~--------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~-~-~~-~~~~~~w~l~sg~~D~  362 (368)
                      -        .|+.-.||-++..+.+.+.++.- ..++.+|+.+.+.+ .| + +. ++...++...+|..-+
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            2        25556677766666677877763 35688999998876 33 2 22 3456666666664433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.017  Score=49.68  Aligned_cols=179  Identities=14%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcc
Q 047325          158 SCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTK  232 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~  232 (368)
                      ..++.++.++.++.. ..++.|.+.|..+.+......... ....+++.+++ .+.++..   ++.+.+.|..+..    
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence            467788877755444 445899999988777776665433 55788899988 5555444   6888888877653    


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccc-----eeeeccceEEEEEEeCCCEEEEeeCC-
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHG-----GVLKGHKLAVLCLAAAGKLVFSGSAD-  305 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d-  305 (368)
                        ..........+ ..+++.|+++.++... .++.|.+.|........     ............+.+++.++.+.... 
T Consensus       152 --~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         152 --VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             --EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence              22222222233 8899999999666554 78899999977543331     01122223447788898866665443 


Q ss_pred             --CeEEEEecCCCceeeeEe--eeccccCeeEEEEecCCeeeecCC
Q 047325          306 --KTICVWRRDGAIHTCLSV--LTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       306 --g~i~iw~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                        +.+...|..+.  .....  ..+-. ....+.++|+|..+-...
T Consensus       229 ~~~~v~~id~~~~--~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         229 GSNNVLKIDTATG--NVTATDLPVGSG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             CCceEEEEeCCCc--eEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence              57888877665  22222  11122 456788999998665553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.74  E-value=0.017  Score=47.36  Aligned_cols=245  Identities=12%  Similarity=0.140  Sum_probs=124.2

Q ss_pred             EEecCCEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEeC--CEEEEEeCCCeEEEEeecCCCccccccCCccccc
Q 047325           50 LAASKDLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVISG--EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL  126 (368)
Q Consensus        50 ~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  126 (368)
                      .+..++.|+.|..+| +.+++.. ........+...|..+....  +.|++-+ |+.+.++++..-...........+..
T Consensus         3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            344577899999999 8888883 11111222333488888763  4444443 69999999987654332210000000


Q ss_pred             eeeeeccCCCCceeEecccceeeeeecCCCEeEEE--EcCC-CCEEEEEeCCCcEEEEEccCC-----eEEEEeecCCCc
Q 047325          127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS--LDQD-CGLLYTASWDRTFKVWRISDS-----KCLESVSAHDDA  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~  198 (368)
                      ..                  ...-......+...+  -... ...|+++. ...|.+|.....     +..+.+.- ...
T Consensus        81 ~~------------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~  140 (275)
T PF00780_consen   81 RS------------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDP  140 (275)
T ss_pred             cc------------------ccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCC
Confidence            00                  000000223344444  1123 33444444 468998887653     34555553 467


Q ss_pred             eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce------eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          199 VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ------TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       199 v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      +.+++|.++ .++.|.. ....+.|+.+.....-.....      .......++..+... ++.+|++-  |..-.+.|.
T Consensus       141 ~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~  215 (275)
T PF00780_consen  141 PSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK  215 (275)
T ss_pred             cEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence            788988844 5555554 457788888543210000000      000112233334433 45566543  333344444


Q ss_pred             CCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      .........+.- ......+.....+|++-+.+ .|.||++.++  +.++.+.
T Consensus       216 ~G~~~r~~~i~W-~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~--~lvQ~i~  264 (275)
T PF00780_consen  216 NGEPSRKSTIQW-SSAPQSVAYSSPYLIAFSSN-SIEVRSLETG--ELVQTIP  264 (275)
T ss_pred             CCCcCcccEEEc-CCchhEEEEECCEEEEECCC-EEEEEECcCC--cEEEEEE
Confidence            432111122221 12334555667788876664 5999999887  5666664

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.018  Score=47.42  Aligned_cols=172  Identities=13%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeEEEEcCC------------C
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLIFTGSAD------------G  217 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------------g  217 (368)
                      +.+.++.....+..|+++..  -+.+++..++..+..+..     .....+.+...|+|.+..+...            |
T Consensus        66 ~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          66 GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            34445554444555665543  367777766655333321     1245567788899966665554            2


Q ss_pred             eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-CcEEEEeCCC--ccccc---eeee-ccce--E
Q 047325          218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GLVNFWEREK--QLSHG---GVLK-GHKL--A  288 (368)
Q Consensus       218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~--~~~~~---~~~~-~~~~--~  288 (368)
                      .|+.+|.. +      ........+-..-+.++|+||++.|+.+... +.|+-|++..  ...-.   .... ....  -
T Consensus       144 ~lyr~~p~-g------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD  216 (307)
T COG3386         144 SLYRVDPD-G------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD  216 (307)
T ss_pred             eEEEEcCC-C------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC
Confidence            34444431 1      1233334445566889999999877776554 7788887762  11110   0111 1111  1


Q ss_pred             EEEEEeCCCEEEEeeCCC-eEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          289 VLCLAAAGKLVFSGSADK-TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      -.++.-+|.+-+++-.+| .|.+|+.+ +  +.+..+.-....+++++|-.
T Consensus       217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G--~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         217 GMAVDADGNLWVAAVWGGGRVVRFNPD-G--KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ceEEeCCCCEEEecccCCceEEEECCC-C--cEEEEEECCCCCCccceEeC
Confidence            155666777776555554 89999776 3  56666666667888999975

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.72  E-value=0.0062  Score=54.18  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=71.6

Q ss_pred             CCCCEEEEEeCCCcEEEEEccC-----CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc-----
Q 047325          164 QDCGLLYTASWDRTFKVWRISD-----SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT-----  231 (368)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~-----  231 (368)
                      ++|++...  .++.|.+.|..+     .+.+..+.. ......+.++|||  .++++..+.++.+.|+.......     
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            35665555  256799999988     355555553 4456889999999  45555669999999998643200     


Q ss_pred             -ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          232 -KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       232 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                       +........- .......+|.++|+...+-.-|..|..|++.+
T Consensus       363 ~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             0011111111 23345678899999888888999999999875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00095  Score=56.87  Aligned_cols=138  Identities=17%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--------eEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325          168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--------LIFTGSADGTVKVWKREQHGKGTKHSLAQTL  239 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  239 (368)
                      ++.++.....|+-.|++.|+.+...+.+.. |+-+.+.|+.        .-+.|-.|..|.-||.|..+..    .+...
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVV  422 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeee
Confidence            344555566789999999999999987766 6667777765        2356777899999999865431    11112


Q ss_pred             ccc----cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325          240 LKQ----ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       240 ~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..+    .....|++-..+| ++++|+.+|.|++||. .+......+.+-..+|  +.++.+|++|++.+ +..+.+-++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            222    2334555555454 7899999999999996 4444445555555555  55667899887655 556666654

>smart00320 WD40 WD40 repeats

Probab=97.67  E-value=0.00023  Score=37.80  Aligned_cols=38  Identities=34%  Similarity=0.661  Sum_probs=33.1

Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      ++++..+..|...|.++.|.+++ .+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667777888999999999987 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00036  Score=60.52  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=69.0

Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE-EEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT-ALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ...+..+.|+|.- .+|.+..+|.|.+..++-.       .+-.+.-+...++ +++|.|||+.|+.|-.||+|++.|.+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccc-------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            3467888999988 9999999999999888732       2344443444455 99999999999999999999999999


Q ss_pred             CccccceeeeccceEEEEEEeC
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAA  295 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~  295 (368)
                      ++..+......-...+.+..++
T Consensus        93 ~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   93 KGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCCceeccccccccchheeecc
Confidence            8876655333333444444443

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=0.00021  Score=37.91  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=30.2

Q ss_pred             eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      .+..|...|.++.|.+++..+++++.|+.+++||
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3445888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0057  Score=56.86  Aligned_cols=111  Identities=23%  Similarity=0.396  Sum_probs=81.9

Q ss_pred             CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      ...+.+.+.-+..++.|+..|.+-..|+...-.......                               .-..+|++++
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsva  137 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVA  137 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeE
Confidence            444555566678899999999999888876422111110                               0457899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE---eCCCC-eEEEEcCCCeEEEEEcC
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV---SSSEG-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~-~l~~~~~dg~i~i~d~~  225 (368)
                      |+.+|..++.|-.+|.|.+||+..++.++.+..+..+...+-   +..++ .++++...|.  +|.+.
T Consensus       138 fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  138 FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            999999999999999999999999999998887776655553   33444 7888888887  55543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.60  E-value=0.033  Score=50.54  Aligned_cols=228  Identities=16%  Similarity=0.212  Sum_probs=116.4

Q ss_pred             CCEEEEccCCC------cEEEEcCCcce----ecccCCCCCeeEEEEe-CCEEEEEeCC-C-----eEEEEeecCCCccc
Q 047325           54 KDLLYTGSDSK------NIRVWKNLKEF----CGFKASSGLVKAIVIS-GEKIFTGHQD-G-----KIRVWKISPKNQSV  116 (368)
Q Consensus        54 ~~~l~s~~~dg------~i~iw~~~~~~----~~~~~~~~~v~~~~~~-~~~l~s~~~d-g-----~i~vw~~~~~~~~~  116 (368)
                      +.+++.||.++      .+..+|..+..    ..+..... -.+++.. +...++|+.| |     ++..||...++-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            44777787774      57777876542    12222223 3344444 6677788888 2     46677776655111


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCeEEEE
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-----TFKVWRISDSKCLES  191 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~  191 (368)
                         .......                         .+...+..+    +|...++||.||     ++-.||..+.+-...
T Consensus       364 ---~a~M~~~-------------------------R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  364 ---VAPMNTK-------------------------RSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             ---cCCccCc-------------------------cccceeEEE----CCEEEEEeccccccccccEEEecCCCCccccc
Confidence               1110000                         011112221    577888888886     466777765442111


Q ss_pred             eecCCCceEEE-EeCCCC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325          192 VSAHDDAVNSV-VSSSEG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       192 ~~~~~~~v~~~-~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      -.-.. ..... ...-+| ..++|+.+      .++..||..++.-    .................+  ++.+.+.|+.
T Consensus       412 a~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g~a~~--~~~iYvvGG~  484 (571)
T KOG4441|consen  412 APMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFGVAVL--NGKIYVVGGF  484 (571)
T ss_pred             CCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccceEEEE--CCEEEEECCc
Confidence            11111 11111 112245 66666644      3577888876532    112222222222222222  5778888887


Q ss_pred             CCc-----EEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCCC-----eEEEEecCCCceeee
Q 047325          264 DGL-----VNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSADK-----TICVWRRDGAIHTCL  321 (368)
Q Consensus       264 dg~-----i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~  321 (368)
                      |+.     |..||.++.+-... ........+-....++.+.++|+.||     +|..||..+.++...
T Consensus       485 ~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~  553 (571)
T KOG4441|consen  485 DGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV  553 (571)
T ss_pred             cCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence            763     77788876543322 12223333444556788888898876     466676665544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.00023  Score=63.93  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             eEEEEcCCCCEEEEEe----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          158 SCMSLDQDCGLLYTAS----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      +-..|+|...++++++    ..|.|.||- .+|++..... ..-.+++++|+|.. .|+.|-.-|.+.+|......    
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence            3467999999998886    357888874 5666554433 22345679999999 88888889999999986542    


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                        .......|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        93 --~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 --THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             --eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence              234456789999999999999999999999999999865

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.048  Score=46.97  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=106.4

Q ss_pred             CEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCC
Q 047325          156 AVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKG  230 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~  230 (368)
                      ....++++++++.+.++..   ++.+.+.|..+.+.+.....-..+ ..+++.|++ .++.. ..++.|.+.|.+.....
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            4467899999988877765   689999999999988886544444 889999999 44444 47899999997654221


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeC-
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSA-  304 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-  304 (368)
                      . . ..............+.++|+++.+......   +.+...|..++..........  ...-..+.|++..+.+... 
T Consensus       196 ~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         196 R-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             c-c-ccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence            0 0 001112223345678899999976665444   588889988765543322221  2334678899998888744 


Q ss_pred             CCeEEEEecCCC
Q 047325          305 DKTICVWRRDGA  316 (368)
Q Consensus       305 dg~i~iw~~~~~  316 (368)
                      .+.+.+-|..+.
T Consensus       274 ~~~V~vid~~~~  285 (381)
T COG3391         274 GGTVSVIDGATD  285 (381)
T ss_pred             CCeEEEEeCCCC
Confidence            478888876654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.52  E-value=0.0042  Score=53.72  Aligned_cols=116  Identities=15%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             CCEeEEEEcCCCCEEEEEe-CCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC
Q 047325          155 DAVSCMSLDQDCGLLYTAS-WDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      ..-..-+|+|||+.|+-+. .||  .|.++|+..+... .+....+.-..=.|+|+|  .+++.+..|.-.||-.+....
T Consensus       238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            3344568999998776554 455  4667788776633 344333333355899999  556666677655554443322


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecC-CCc--EEEEeCCCcc
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGL--VNFWEREKQL  276 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~  276 (368)
                           ....+......-..-.++|+|++++..+. +|.  |.+.|+.++.
T Consensus       317 -----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         317 -----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             -----ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence                 11222222222226678999998887664 344  5566665443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.52  E-value=0.064  Score=48.27  Aligned_cols=176  Identities=10%  Similarity=0.028  Sum_probs=87.9

Q ss_pred             ecCCEEEEccCCCcEEEEcCCcceeccc----CCC--CCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325           52 ASKDLLYTGSDSKNIRVWKNLKEFCGFK----ASS--GLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        52 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~----~~~--~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~  118 (368)
                      +.++.++.++.|+.+.-.|..+.....+    .+.  ..+. +-...++.++.+..      +|.|..+|.++++.....
T Consensus       118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            3445666777788887777764432211    111  1111 11223556666643      689999999999877655


Q ss_pred             cCCccccceeeee-ccCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCC----------------CcEEE
Q 047325          119 RAGTLPTLKDIFK-SSIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWD----------------RTFKV  180 (368)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d----------------~~i~i  180 (368)
                      ............. .......-......  ..+..-...+. .+.+.|...+++.+..+                ..|.-
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~--~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA  275 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPG--DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA  275 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCC--CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence            4332110000000 00000000000000  00100111222 34556655555555411                16888


Q ss_pred             EEccCCeEEEEeecCCCce---------EEEEeCCCC----eEEEEcCCCeEEEEEcCCCCC
Q 047325          181 WRISDSKCLESVSAHDDAV---------NSVVSSSEG----LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       181 wd~~~~~~~~~~~~~~~~v---------~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      .|+++|+..-.++.....+         .-+....+|    .++.+..+|.+++.|.++++.
T Consensus       276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            8999999887776422211         122222344    677899999999999987643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.47  E-value=0.027  Score=51.08  Aligned_cols=159  Identities=14%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             EEEEcCCCCEEEEEeCC------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCCCe-----EEEEEc
Q 047325          159 CMSLDQDCGLLYTASWD------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSADGT-----VKVWKR  224 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~-----i~i~d~  224 (368)
                      +++.. ++...++||.|      ..+..||..+.+=..  .+...... ..++.. +| ..++|+.||.     +..||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEecC
Confidence            44444 34678888888      356778877665222  11111111 112222 34 7788888864     777887


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC------cEEEEeCCCccccc-eeeeccceEEEEEEeCCC
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG------LVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGK  297 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~  297 (368)
                      ++..=    .............-.+.+  ++.+.++|+.++      .+..||..+..-.. ...............++.
T Consensus       404 ~~~~W----~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~  477 (571)
T KOG4441|consen  404 VTNKW----TPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGK  477 (571)
T ss_pred             CCCcc----cccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCE
Confidence            75421    122212122222222223  677788887554      46778877543211 111111112224445888


Q ss_pred             EEEEeeCCCe-----EEEEecCCCceeeeEeeec
Q 047325          298 LVFSGSADKT-----ICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       298 ~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~  326 (368)
                      +.+.||.|+.     |..||..+.++..+.....
T Consensus       478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             EEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            8899998873     6778887776666644443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.025  Score=48.24  Aligned_cols=186  Identities=10%  Similarity=0.020  Sum_probs=93.6

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cC----------------CCceEEEEeCCCC-eEEEEc-
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AH----------------DDAVNSVVSSSEG-LIFTGS-  214 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~----------------~~~v~~~~~~~~~-~l~~~~-  214 (368)
                      ...+....|+|+|+.++-.. ++.|.+.++.+++..+.-. +.                -+.-..+.|+||+ +|+... 
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            35677899999999988886 5889999988775443221 10                1123567899998 554432 


Q ss_pred             CCCeEEEE-----------------------------------EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325          215 ADGTVKVW-----------------------------------KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       215 ~dg~i~i~-----------------------------------d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      .+..|+.+                                   |+..+... ..............+..+.|.++++.|+
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence            23333322                                   33222110 0000001122345678888988888444


Q ss_pred             Ee--cCCC---cEEEEeCCCccccceeeeccceE-----EEEEE-eC-CCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325          260 CG--SSDG---LVNFWEREKQLSHGGVLKGHKLA-----VLCLA-AA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       260 ~~--~~dg---~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~-~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      ..  ..+.   .+.+.|..++.............     ...+. ++ +.+|.....||.-+||-++..... ...+...
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G  278 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG  278 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence            32  2222   35566765543322111111111     22333 33 456666667887777665543323 3344444


Q ss_pred             ccCeeE-EEEecCCee
Q 047325          328 TGPVKC-LAVEEDRDS  342 (368)
Q Consensus       328 ~~~v~~-l~~~~~~~~  342 (368)
                      .-.|+. +.+++++..
T Consensus       279 ~~~V~~i~~~d~~~~~  294 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNR  294 (353)
T ss_dssp             SS-EEEEEEEECTSSE
T ss_pred             ceeecccceEcCCCCE
Confidence            555755 677888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.065  Score=44.25  Aligned_cols=191  Identities=9%  Similarity=0.075  Sum_probs=103.6

Q ss_pred             EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcc-ccccCCccccceeeeec
Q 047325           56 LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQS-VHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~  132 (368)
                      ++.+--..+.|.-|+..+. ...+............+ +..|+++. . -+.+++.+++... .........        
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~--------  108 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGL--------  108 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCC--------
Confidence            5666666778888887644 33333333332333344 44555443 3 3445665544431 111110000        


Q ss_pred             cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCeEEEEeecCCCceEE
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----------DRTFKVWRISDSKCLESVSAHDDAVNS  201 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~  201 (368)
                                          .....+.+...|+|.+.++...           -|.|+-+|. .+..+..+..+-..-+.
T Consensus       109 --------------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NG  167 (307)
T COG3386         109 --------------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNG  167 (307)
T ss_pred             --------------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCc
Confidence                                1234456777787765544333           133444443 56666666655566688


Q ss_pred             EEeCCCC-eEEEE-cCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-cEEEEeCCCccc
Q 047325          202 VVSSSEG-LIFTG-SADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-LVNFWEREKQLS  277 (368)
Q Consensus       202 ~~~~~~~-~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~  277 (368)
                      ++|+||+ .|+.+ +..+.|.-|++.. .................+..-.++...+|++-+++..+| .|..|+.+ ++.
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l  246 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL  246 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence            9999999 55544 4468899888863 111111111222223445666778888888776555544 89999988 444


Q ss_pred             c
Q 047325          278 H  278 (368)
Q Consensus       278 ~  278 (368)
                      .
T Consensus       247 ~  247 (307)
T COG3386         247 L  247 (307)
T ss_pred             E
Confidence            4

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.27  E-value=0.0014  Score=49.73  Aligned_cols=139  Identities=18%  Similarity=0.266  Sum_probs=79.9

Q ss_pred             EEEEccCCCcEEEEcCCcceeccc---CCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           56 LLYTGSDSKNIRVWKNLKEFCGFK---ASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      .+..-+.||.|+-+++.+.....+   .|... ..+.-.+..++.|+.+|.|.+|..............           
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-----------   99 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-----------   99 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhc-----------
Confidence            344556788888887654322111   11111 222222778999999999999988733321111110           


Q ss_pred             cCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCC-CCe
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSS-EGL  209 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~-~~~  209 (368)
                                          -...|. .+..-.++.+..+++.||.|+.|++.-++.+.....|+ .++..+.... +..
T Consensus       100 --------------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~  159 (238)
T KOG2444|consen  100 --------------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEF  159 (238)
T ss_pred             --------------------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCce
Confidence                                111222 22333356688999999999999998888877777676 3333333322 224


Q ss_pred             EEEE--cCCCeEEEEEcCC
Q 047325          210 IFTG--SADGTVKVWKREQ  226 (368)
Q Consensus       210 l~~~--~~dg~i~i~d~~~  226 (368)
                      +..+  +.|..++.|++..
T Consensus       160 i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  160 LKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEeeccccchhhhhcchhh
Confidence            4444  5566666666643

>PHA02713 hypothetical protein; Provisional

Probab=97.26  E-value=0.031  Score=50.72  Aligned_cols=94  Identities=11%  Similarity=0.084  Sum_probs=47.6

Q ss_pred             cEEEEEccCCeE--EEEeecCCCceEEEEeCCCCeEEEEcCC------CeEEEEEcCC-CCCCcccccceeeccccccEE
Q 047325          177 TFKVWRISDSKC--LESVSAHDDAVNSVVSSSEGLIFTGSAD------GTVKVWKREQ-HGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       177 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      .+..||..+.+=  +..+...... .+++...+...+.|+.+      ..+..||.+. ..    ......+........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~~~  507 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSALH  507 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCcccccce
Confidence            477788776542  2222111111 12333333355556543      2467888875 21    122222222222233


Q ss_pred             EEEEcCCCCEEEEecCCC--cEEEEeCCCccc
Q 047325          248 ALVVSSSRSIVYCGSSDG--LVNFWEREKQLS  277 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  277 (368)
                      .+.+  ++++.++|+.+|  .+..||..+.+-
T Consensus       508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             eEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            3333  678888898888  677788776543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0064  Score=52.09  Aligned_cols=130  Identities=16%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-------EEEEecCCCcEEEEeCCCccc-cce
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-------IVYCGSSDGLVNFWEREKQLS-HGG  280 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~-~~~  280 (368)
                      ++..+.....++-.|++.+      +.+..+.-+.. |.-+.+.|+.+       .-+.|-.+..|.-||.+-.-. ...
T Consensus       348 il~~~~~~~~l~klDIE~G------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERG------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             EeeCCCCcCcceeeecccc------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            5566666777888888766      34555555554 67777777543       224466788899999883222 222


Q ss_pred             eeeccceE----EEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          281 VLKGHKLA----VLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       281 ~~~~~~~~----~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ....|...    -.|+.. ...+|++||.+|.||+||--..  .....+++-..+|..|..+.+|.++...+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~--~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR--RAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhh--hhhhcccccCCceeeEEeeccCcEEEEec
Confidence            33333221    134443 4679999999999999986322  33445778889999999999999654433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.15  E-value=0.1  Score=42.72  Aligned_cols=224  Identities=12%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325           91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY  170 (368)
Q Consensus        91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  170 (368)
                      .++.|+.|+.+| +.+++..........                                 .+...|..+...|+-+.++
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------------------------------~~~~~I~ql~vl~~~~~ll   51 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI---------------------------------LKLSSITQLSVLPELNLLL   51 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeE---------------------------------eecceEEEEEEecccCEEE
Confidence            378999999998 888888222211110                                 0334589999999877777


Q ss_pred             EEeCCCcEEEEEccCCeEEEEe--------------ecCCCceEEEE--eCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          171 TASWDRTFKVWRISDSKCLESV--------------SAHDDAVNSVV--SSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      +-+ |+.+.++++..-......              ......+...+  -...+ ..++......|.+|.......... 
T Consensus        52 vLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-  129 (275)
T PF00780_consen   52 VLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-  129 (275)
T ss_pred             EEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-
Confidence            665 599999998765443311              11222344444  12233 444444555999998876321110 


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-c-----------cceEEEEEEe-CCCEEE
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-G-----------HKLAVLCLAA-AGKLVF  300 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-----------~~~~~~~~~~-~~~~l~  300 (368)
                      ...+.+ .....+..++|.  ++.++.|..++ ..+.|+.++... .... .           ...++..+.. ++.+|+
T Consensus       130 ~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll  204 (275)
T PF00780_consen  130 KLLKEI-SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL  204 (275)
T ss_pred             ceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence            122222 234678888887  56777776554 788888854332 1111 0           1122333333 355665


Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL  360 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~  360 (368)
                      +-  |..-.+.|..... .....+.- ...+.++++... -.++..++.+.+|.+.+|..
T Consensus       205 ~~--~~~g~fv~~~G~~-~r~~~i~W-~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~l  259 (275)
T PF00780_consen  205 CY--DNIGVFVNKNGEP-SRKSTIQW-SSAPQSVAYSSP-YLIAFSSNSIEVRSLETGEL  259 (275)
T ss_pred             Ee--cceEEEEcCCCCc-CcccEEEc-CCchhEEEEECC-EEEEECCCEEEEEECcCCcE
Confidence            43  3333333443321 11122322 235566777543 34455556688887777643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA03098 kelch-like protein; Provisional

Probab=97.14  E-value=0.058  Score=49.04  Aligned_cols=160  Identities=14%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcCC------CeEEEEEcCCCCCCc
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSAD------GTVKVWKREQHGKGT  231 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  231 (368)
                      ++..++.||.+     ..+..||..+.+-..  .+...... .+++...+..++.|+.+      ..+..||+.+..-  
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW--  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee--
Confidence            45677777765     346778877654221  11111111 12222233355556532      4578888875421  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCC--------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEe
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD--------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                        ............. +++ ..++.+.+.|+.+        ..+.+||..+.+-... ..............++++++.|
T Consensus       419 --~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G  494 (534)
T PHA03098        419 --SKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG  494 (534)
T ss_pred             --eecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence              1111111111111 122 2255666666643        2388889876432211 1111111112233477888888


Q ss_pred             eCC-----CeEEEEecCCCceeeeEeeeccccCe
Q 047325          303 SAD-----KTICVWRRDGAIHTCLSVLTGHTGPV  331 (368)
Q Consensus       303 ~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v  331 (368)
                      +.+     +.+.+||.++..+..+..+..+.+.|
T Consensus       495 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             CCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence            764     46888888877666555544443333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.14  E-value=0.091  Score=41.85  Aligned_cols=205  Identities=9%  Similarity=0.100  Sum_probs=105.2

Q ss_pred             eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-eecccCC-CCCeeEEEEe-CCEEE-EEeCCCeEEEEeecC
Q 047325           39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-FCGFKAS-SGLVKAIVIS-GEKIF-TGHQDGKIRVWKISP  111 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-~~~~~~~-~~~v~~~~~~-~~~l~-s~~~dg~i~vw~~~~  111 (368)
                      .+.+-...+..|+|+++   ++++....+.|...+.... +...... .+..-.|++. ++.++ +--.++.+.+.++..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            45566667999999865   7788888888888887633 2222221 3567788887 34444 444589999999865


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC---CeE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD---SKC  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~  188 (368)
                      .........                     ...........++..+-.++|++.++.|+++-...-..++.+..   ...
T Consensus        96 ~~~~~~~~~---------------------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   96 DTTSLDRAD---------------------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             --TT--EEE---------------------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             cccccchhh---------------------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            432111100                     00000000112556789999999888888887777777777654   222


Q ss_pred             EEEe--------ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-------ccccEEEEEE
Q 047325          189 LESV--------SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-------QECAVTALVV  251 (368)
Q Consensus       189 ~~~~--------~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~  251 (368)
                      +...        ......+.++.++|..  +++....+..|..+|.... .    .....+..       .-.....++|
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-~----~~~~~L~~g~~gl~~~~~QpEGIa~  229 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR-V----VSSLSLDRGFHGLSKDIPQPEGIAF  229 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E----EEEEE-STTGGG-SS---SEEEEEE
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC-E----EEEEEeCCcccCcccccCCccEEEE
Confidence            1111        1123457788888876  7777888889999995422 1    01111111       1134778999


Q ss_pred             cCCCCEEEEecCCCcEEEE
Q 047325          252 SSSRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~  270 (368)
                      .++|++.+++ +-+..++|
T Consensus       230 d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  230 DPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -TT--EEEEE-TTTEEEEE
T ss_pred             CCCCCEEEEc-CCceEEEe
Confidence            9998655554 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.11  E-value=0.0022  Score=35.78  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      ....|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4467999999999999999999999999998 5543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.06  E-value=0.22  Score=44.96  Aligned_cols=68  Identities=10%  Similarity=0.162  Sum_probs=44.4

Q ss_pred             cCCEEEEccCCCcEEEEcCCcceec--ccCCC-CCe----------eEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFCG--FKASS-GLV----------KAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~-~~v----------~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++.++.++.++.|.-.|..+....  +.... ..+          ..+.+.++.++.++.|+.+...|.++++......
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            3567777777888888887654322  21110 001          1234557788889999999999999998766554


Q ss_pred             C
Q 047325          120 A  120 (368)
Q Consensus       120 ~  120 (368)
                      .
T Consensus       148 ~  148 (527)
T TIGR03075       148 N  148 (527)
T ss_pred             c
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.02  E-value=0.029  Score=43.05  Aligned_cols=50  Identities=14%  Similarity=0.115  Sum_probs=43.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG  208 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (368)
                      .+++..+|++.+++-..++|.-.|+.+|+.+.+++-....|++++|...+
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence            34556688888888888999999999999999999999999999997664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.0062  Score=56.66  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV  331 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v  331 (368)
                      .+-.++.|++.|.+-..|......+...-..-..+|  ++++-+|..++.|-.+|.|.+||+..+  +.++.+..|..|.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCcc
Confidence            455788899999999999886544222222223444  555568999999999999999999886  5556666566554


Q ss_pred             eEE---EEecCCeeeecCCcceEEEEEee
Q 047325          332 KCL---AVEEDRDSSSSTSSCAQRWIVYS  357 (368)
Q Consensus       332 ~~l---~~~~~~~~~~~~~~~~~~w~l~s  357 (368)
                      +++   .+..++..+.+++..+.+|.+.-
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gsf~~lv~  204 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGSFWKLVF  204 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCceEEEEe
Confidence            444   44455667888888888887653

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.94  E-value=0.29  Score=44.69  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=75.2

Q ss_pred             EeEEEEcCCCCEEEEEeCC------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          157 VSCMSLDQDCGLLYTASWD------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      .+.-.|+|+|..+++....            +.+.+.++..++...   .....|..+.|+||| .++... ++.|.+--
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            5667888988777666432            233333443333322   234579999999999 444433 57777733


Q ss_pred             cCCCCCCc-ccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEe--CCCccccceeeec--cceEEEEEEeCCC
Q 047325          224 REQHGKGT-KHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWE--REKQLSHGGVLKG--HKLAVLCLAAAGK  297 (368)
Q Consensus       224 ~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~--~~~~~~~~~~~~~  297 (368)
                      +.....+. .......+ ......+..+.|.+++.++ .+..++...+|.  +......  ....  ....+.+++-...
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCCc
Confidence            32211111 11111112 2233346789999988855 555445444454  3322211  1111  1344555555445


Q ss_pred             EEEEeeCCCeEE
Q 047325          298 LVFSGSADKTIC  309 (368)
Q Consensus       298 ~l~~~~~dg~i~  309 (368)
                      .++....+|.+.
T Consensus       552 ~iyv~~~~g~~~  563 (591)
T PRK13616        552 TVYVTDARAVLQ  563 (591)
T ss_pred             eEEEEcCCceEE
Confidence            566666666443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.91  E-value=0.15  Score=46.41  Aligned_cols=173  Identities=12%  Similarity=0.095  Sum_probs=90.2

Q ss_pred             CCEeEEEEcCCCCEEEEEe------CCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCC---------
Q 047325          155 DAVSCMSLDQDCGLLYTAS------WDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSAD---------  216 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---------  216 (368)
                      ..+...+++|+++.++..-      .|.  .|.+++. .+.......+  .....-.|+|+| .+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577889999999877665      243  4555564 2322222222  236778999996 55555422         


Q ss_pred             ---CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE---EeCCCccccc---eeee-ccc
Q 047325          217 ---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF---WEREKQLSHG---GVLK-GHK  286 (368)
Q Consensus       217 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~---~~~~-~~~  286 (368)
                         +.+.+.+++.+.       ...  .....|..+.|+|||..++... +|.|++   -....+....   ..+. .-.
T Consensus       427 ~~~gql~~~~vd~ge-------~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        427 PATGQLARTPVDASA-------VAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             CCCceEEEEeccCch-------hhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence               223333332210       111  2345799999999999888765 477777   3333332111   0011 111


Q ss_pred             eEEEE--EEeCCCEEEEeeCCCeEEEEec--CCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          287 LAVLC--LAAAGKLVFSGSADKTICVWRR--DGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       287 ~~~~~--~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      ..+..  +..++.+ +++..++.-.+|.+  +..... ...-.....++.+|+=+++..+
T Consensus       497 ~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~~iy  554 (591)
T PRK13616        497 DTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPSTVY  554 (591)
T ss_pred             CccccceEecCCEE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCceEE
Confidence            11233  4445554 45555555555654  332111 1011113567888888875433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.85  E-value=0.2  Score=41.21  Aligned_cols=155  Identities=11%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      -...+..+...+++.+++++.......-||.-...-...-+.....|..+.|.|++.|......|.|+.=+.....  ..
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence            3456888888999998888876555667876432222222334678999999999955556689999888722111  01


Q ss_pred             cc-cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEe-CCCEEEEeeCCCeE
Q 047325          233 HS-LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAA-AGKLVFSGSADKTI  308 (368)
Q Consensus       233 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~~~dg~i  308 (368)
                      .. ...........+..++|.+++...++|+. |.+.. ....++.-.....  .-....+.+.+ +.+.-.+-+.+|.|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l  298 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVL  298 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEE
Confidence            00 11112223445899999998777776654 44433 3333322211111  11222333332 33444445678877


Q ss_pred             EEE
Q 047325          309 CVW  311 (368)
Q Consensus       309 ~iw  311 (368)
                      .-|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.84  E-value=0.27  Score=42.45  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=81.5

Q ss_pred             CEEEEccCCCcEEEEcCCcceec------ccCCCCCeeEEEEe------CCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325           55 DLLYTGSDSKNIRVWKNLKEFCG------FKASSGLVKAIVIS------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~~~~------~~~~~~~v~~~~~~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  122 (368)
                      +.+++||..|.+||++.......      -..-..+|..+...      ....++.-.-..+.||.+.......  ..+ 
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~--~~g-  114 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV--EHG-  114 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc--ccC-
Confidence            49999999999999997532111      11234577777653      2233333556678888873222110  000 


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCC--CEeEEEEcC----C-CCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQ----D-CGLLYTASWDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                                     ....     ......|.-  ....+..-|    . ..++.+-+.||.+.+++-+.......+.. 
T Consensus       115 ---------------~~~~-----L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-  173 (418)
T PF14727_consen  115 ---------------NQYQ-----LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-  173 (418)
T ss_pred             ---------------cEEE-----EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence                           0000     111111221  122222222    2 45788889999999999766554444443 


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcC
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~  225 (368)
                      ---...+.+.+.. .+++++.+..+..|...
T Consensus       174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            1112234555555 88899999999988763

>PHA03098 kelch-like protein; Provisional

Probab=96.82  E-value=0.17  Score=46.11  Aligned_cols=64  Identities=11%  Similarity=0.155  Sum_probs=32.8

Q ss_pred             EEEecCCEEEEccCCC------cEEEEcCCccee----cccCCCCCeeEEEEeCCEEEEEeCCC-----eEEEEeecCC
Q 047325           49 SLAASKDLLYTGSDSK------NIRVWKNLKEFC----GFKASSGLVKAIVISGEKIFTGHQDG-----KIRVWKISPK  112 (368)
Q Consensus        49 ~~~~~~~~l~s~~~dg------~i~iw~~~~~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~vw~~~~~  112 (368)
                      ++..++.+++.||.++      .+..||..+...    ...........+...+...+.|+.++     .+..||..++
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            3444555777777653      466677653221    11112222333444466667777652     3556666554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.78  E-value=0.0069  Score=33.83  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ...|..++|+|...+||.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568999999999999999999999999984

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.63  E-value=0.31  Score=40.34  Aligned_cols=153  Identities=12%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             CEEEEEeCCCcEEEEEcc-CCeEEEEee----cCCCce-EEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325          167 GLLYTASWDRTFKVWRIS-DSKCLESVS----AHDDAV-NSVVSSSE-GLIFTGSADGTVKVWKREQHGKGTKHSLAQTL  239 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~-~~~~~~~~~----~~~~~v-~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  239 (368)
                      ..|.+-|.||.+.-..+. .|+...+..    ....++ ..-++... +.++--+.+|.|+--|+.....    .....+
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~----~~~~~~  223 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA----KFGKPW  223 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE----EEEEEE
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc----cccCcc
Confidence            457788889999988887 555543221    112222 12233333 3566678899999999875532    111111


Q ss_pred             cc----------ccccEEEEEEcCCCCEEEEecC---CC-------cEEEEeCCCccccceeeeccceEEEEEEeCCC-E
Q 047325          240 LK----------QECAVTALVVSSSRSIVYCGSS---DG-------LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-L  298 (368)
Q Consensus       240 ~~----------~~~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~  298 (368)
                      ..          ..+.-.-+++++..+.|+.--.   ++       .|-++|+.+++...+....+....+.++-+.+ +
T Consensus       224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPL  303 (342)
T ss_dssp             ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-E
T ss_pred             cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcE
Confidence            10          1233445777776655554221   11       47788888888876666566655566776544 6


Q ss_pred             EEEe-eCCCeEEEEecCCCceeeeEeee
Q 047325          299 VFSG-SADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       299 l~~~-~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      |++. ..++.+.+||..++  +.+.++.
T Consensus       304 L~~~~~~~~~l~v~D~~tG--k~~~~~~  329 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDAATG--KLVRSIE  329 (342)
T ss_dssp             EEEEETTTTEEEEEETTT----EEEEE-
T ss_pred             EEEEcCCCCeEEEEeCcCC--cEEeehh
Confidence            6554 46899999998876  6666654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.16  Score=43.19  Aligned_cols=140  Identities=10%  Similarity=0.018  Sum_probs=87.6

Q ss_pred             EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---c
Q 047325          200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---L  276 (368)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~  276 (368)
                      +.+.|...+..+.+...|.+.-|-....+.   ..+.......+++|.++.|++|.+.||.--.+..|.+++....   .
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            344555444444444455566666554331   1223333445679999999999999999999999999998432   2


Q ss_pred             ccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          277 SHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      ......+.....+..|.| +..-++.-+..| +-+|..... ...++..+.|.-.|+=-.|.++...+.
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pe-krslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPE-KRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchh-hhhhhhhhhcccCccEEEEccccceEe
Confidence            222233333455777777 345555555444 777766543 244556677888888889999887543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=96.41  E-value=0.58  Score=44.34  Aligned_cols=173  Identities=16%  Similarity=0.151  Sum_probs=98.8

Q ss_pred             cEEEEEccCCeEEEEeecCC----CceEEEEeCCCC---eEEEEc-----------CCCeEEEEEcCCCCCCccccccee
Q 047325          177 TFKVWRISDSKCLESVSAHD----DAVNSVVSSSEG---LIFTGS-----------ADGTVKVWKREQHGKGTKHSLAQT  238 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~---~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~  238 (368)
                      .|++.|..+++.+..+.-..    -.+....|+...   .++++.           .+|.++.|++-..+.  ....+. 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--~lellh-  930 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--KLELLH-  930 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc--eeeeee-
Confidence            37788887777665554222    234555555443   333332           245577777654332  111111 


Q ss_pred             eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325          239 LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI  317 (368)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  317 (368)
                      ...-.+.+.  +..|...++++| ....+++||+.+.+.+...... -+..|..+...+..+++|...-.++++..+...
T Consensus       931 ~T~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  931 KTEIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             ccCCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC
Confidence            112233444  445555566655 4468999999876655433333 367778888899999999887777776665443


Q ss_pred             eeeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEee
Q 047325          318 HTCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYS  357 (368)
Q Consensus       318 ~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s  357 (368)
                      .+. ..+...  ...|+++.+- |...+|.+|.-+.+|.+-.
T Consensus      1008 n~l-~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 NQL-IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             CeE-EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence            233 333222  2346666554 4556788888888887643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.38  E-value=0.92  Score=42.84  Aligned_cols=213  Identities=9%  Similarity=0.057  Sum_probs=111.9

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE-E--EEcCCCCE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC-M--SLDQDCGL  168 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~--~~~~~~~~  168 (368)
                      ++.|+.++.++.|.-.|..+++................           ...+.-...+......... .  .-...+..
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~-----------~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r  262 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQ-----------HQTCRGVSYYDAPAAAAGPAAPAAPADCARR  262 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc-----------cccccceEEecCCcccccccccccccccCCE
Confidence            78888899999999999999987766554322110000           0000000000000000000 0  00013457


Q ss_pred             EEEEeCCCcEEEEEccCCeEEEEeecCCCceE-------------EEEeCC---CCeEEEEcC----------CCeEEEE
Q 047325          169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVN-------------SVVSSS---EGLIFTGSA----------DGTVKVW  222 (368)
Q Consensus       169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~l~~~~~----------dg~i~i~  222 (368)
                      ++.++.|+.+.-.|.++|+.+..+.. ++.+.             .+.-.|   ++.+++|+.          +|.|+-+
T Consensus       263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            88888999999999999998876642 11110             111112   346666643          6889999


Q ss_pred             EcCCCCCCcccccce-----------eec-cccccEEEEEEcCCCCEEEEecC------------------CCcEEEEeC
Q 047325          223 KREQHGKGTKHSLAQ-----------TLL-KQECAVTALVVSSSRSIVYCGSS------------------DGLVNFWER  272 (368)
Q Consensus       223 d~~~~~~~~~~~~~~-----------~~~-~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~  272 (368)
                      |.++++.........           ... +....-...+++++...++.+..                  .+.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            998876432221100           000 00111123455555444444321                  234555666


Q ss_pred             CCccccceeeecc-c---------eEEEEEEe-CCC---EEEEeeCCCeEEEEecCCC
Q 047325          273 EKQLSHGGVLKGH-K---------LAVLCLAA-AGK---LVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       273 ~~~~~~~~~~~~~-~---------~~~~~~~~-~~~---~l~~~~~dg~i~iw~~~~~  316 (368)
                      ++++........| .         .....+.. +++   .++.++.+|.+.+.|-+++
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            7766554333322 1         12233443 553   8999999999999998776

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.33  E-value=0.001  Score=60.42  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      +.-++..+..++.|++....+... ..+.+|...+..+++-..|++...+                              
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------  242 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------  242 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------
Confidence            555666667778888776654322 4455577777777665555221111                              


Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                            .+|||..++.++.||.++.|.+
T Consensus       243 ------lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  243 ------LSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ------eCCCCcEEEEeecCCccceeee
Confidence                  5677777777777777766654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.23  E-value=0.0092  Score=54.58  Aligned_cols=158  Identities=12%  Similarity=0.146  Sum_probs=90.2

Q ss_pred             CcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC-cccccceeeccccccEEEEEE
Q 047325          176 RTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG-TKHSLAQTLLKQECAVTALVV  251 (368)
Q Consensus       176 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~i~~~~~  251 (368)
                      +-+++-+..+... -..+++..+.+-.+.|....  .+.  -.-|.+.+||+..-... .....+.........+.-+.|
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w  188 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW  188 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence            4455555433221 12234556667777764433  222  34477889988642211 111112222233344455555


Q ss_pred             cC---CCCEEEEecCCCcEEEEeCCCccccceeeeccceE-------------EEEEEeCCCEEEEeeCCCeEEEEecC-
Q 047325          252 SS---SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA-------------VLCLAAAGKLVFSGSADKTICVWRRD-  314 (368)
Q Consensus       252 ~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~dg~i~iw~~~-  314 (368)
                      .|   +..++.++-.++.+++....+...  ..+.+|...             +..++|||..++.+..||.+++|.+. 
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            54   667888888889998877654322  233334432             35688999999999999999999763 


Q ss_pred             --CCceeeeEeeecccc-CeeEEEEe
Q 047325          315 --GAIHTCLSVLTGHTG-PVKCLAVE  337 (368)
Q Consensus       315 --~~~~~~~~~~~~h~~-~v~~l~~~  337 (368)
                        .....++..++.|.+ +-.|.-|.
T Consensus       267 ~g~~~~rclhewkphd~~p~vC~lc~  292 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDKHPRVCWLCH  292 (1283)
T ss_pred             eccccHhhhhccCCCCCCCceeeeec
Confidence              223456777788874 43333343

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.22  E-value=0.49  Score=38.07  Aligned_cols=189  Identities=11%  Similarity=0.131  Sum_probs=114.6

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      -...+.++.|+|+.+.|++......-.++=..+|+.+.+++-. -.....+.+..++ +.++--.++.+.++.+......
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            4455999999999999988887777777766788988887632 1223456777777 4444455888888887655331


Q ss_pred             cccc----cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc--ceeeeccc----eEE---EEEEe---
Q 047325          231 TKHS----LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH--GGVLKGHK----LAV---LCLAA---  294 (368)
Q Consensus       231 ~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~----~~~---~~~~~---  294 (368)
                      ....    .+............++|+|....|+.+-+-.-+.||........  ......+.    ..+   ..+.+   
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~  243 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI  243 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence            1111    11112222567889999999999998888887888776532211  01111111    112   22333   


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc------ccCeeEEEEecCCe
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH------TGPVKCLAVEEDRD  341 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~  341 (368)
                      .+.+|+-+.+++.+.-.|........+.-..+.      -..-..|+..++|.
T Consensus       244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             CCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            367788888888888887765422222222221      12345677777776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.21  E-value=0.77  Score=40.29  Aligned_cols=181  Identities=14%  Similarity=0.089  Sum_probs=93.3

Q ss_pred             EeEEEEcCCCCEEEEE-eCCC----cEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC--eEEEEcCC----------Ce
Q 047325          157 VSCMSLDQDCGLLYTA-SWDR----TFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG--LIFTGSAD----------GT  218 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~d----------g~  218 (368)
                      +....++|++++++.+ +..|    .|+++|+.+++.+... ...  ....+.|.+++  .+.+...+          ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467889999988766 3444    5999999999876532 221  22339999997  44444332          23


Q ss_pred             EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCc----cccceeeeccceEEE
Q 047325          219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQ----LSHGGVLKGHKLAVL  290 (368)
Q Consensus       219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~~~~  290 (368)
                      |+.|.+.+...  ....+............+..++++++|+.....    ..+++.|+...    ...............
T Consensus       204 v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  204 VYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             EEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            77777765421  111122222222226678899999987764322    35778888764    222222222223333


Q ss_pred             EEEeCCC-EEEEee---CCCeEEEEecCCCcee-eeEeeecccc--CeeEEEEecCCe
Q 047325          291 CLAAAGK-LVFSGS---ADKTICVWRRDGAIHT-CLSVLTGHTG--PVKCLAVEEDRD  341 (368)
Q Consensus       291 ~~~~~~~-~l~~~~---~dg~i~iw~~~~~~~~-~~~~~~~h~~--~v~~l~~~~~~~  341 (368)
                      .+...+. +++...   .++.|...++...... ....+..+..  .+..+....+..
T Consensus       282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred             EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence            3333344 433332   2466777777655321 1224444544  466666554443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.11  E-value=0.31  Score=41.65  Aligned_cols=145  Identities=12%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             eEEEEcCCCCEEEEEe--------------------CCCcEEEEEccCCeEEEEeecCCC--ceEEEEeCC--CC--eEE
Q 047325          158 SCMSLDQDCGLLYTAS--------------------WDRTFKVWRISDSKCLESVSAHDD--AVNSVVSSS--EG--LIF  211 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~--~~--~l~  211 (368)
                      ..+-+.|..+.+++..                    ...++.+||+.+.+.++++.-...  ....+.|..  +.  -++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            4455666666666653                    245899999999999999875432  344565543  33  334


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeec-----------------cccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLL-----------------KQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE  273 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  273 (368)
                      .+.-..+|..|--...+. .....+..+.                 .-..-|+.|..|.|.++|..++ .+|.|+.||+.
T Consensus       264 g~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            344455555554422211 1111111111                 1134578999999999887655 78999999998


Q ss_pred             Cccccceee---ecc-----------------ceEEEEEEeCCCEEEEee
Q 047325          274 KQLSHGGVL---KGH-----------------KLAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       274 ~~~~~~~~~---~~~-----------------~~~~~~~~~~~~~l~~~~  303 (368)
                      ....++..-   .+-                 ....+.++.||+.|+...
T Consensus       343 DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  343 DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            654432211   110                 113467888888777653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.99  E-value=0.53  Score=36.49  Aligned_cols=141  Identities=10%  Similarity=0.060  Sum_probs=76.6

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC--------CceEEEEeCCCC--eEEEEcCCCeEEEEE
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD--------DAVNSVVSSSEG--LIFTGSADGTVKVWK  223 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~--~l~~~~~dg~i~i~d  223 (368)
                      ..+.+.-..+|+|++++-.-.|-. -.+....+....-+.+|.        .--+.++|..+.  ..++-+.+-+|.-||
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345566678899987432222211 122222233222222332        233567888766  555667778887788


Q ss_pred             cC--CCCCCcccccceeecc----ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325          224 RE--QHGKGTKHSLAQTLLK----QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK  297 (368)
Q Consensus       224 ~~--~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (368)
                      .+  ++.. .....+..+..    ..-..-.++...+|++.++.-..++|...|..+++.+..... ....+.+.++-|.
T Consensus       187 yd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgGk  264 (310)
T KOG4499|consen  187 YDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGGK  264 (310)
T ss_pred             cCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecCC
Confidence            43  3322 11111111111    111122345566888888888899999999999888754443 3556666666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.97  E-value=0.49  Score=43.04  Aligned_cols=108  Identities=12%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE----eCCCEEEEeeCCCeEEEEecC------
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA----AAGKLVFSGSADKTICVWRRD------  314 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~i~iw~~~------  314 (368)
                      .+.-+.-+.-++..++.+....+.|||.+...............|..+.    |+++.+++.|-.+.|.+|--.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            3444444555555555555568999999877644333334456666665    478888888889999998431      


Q ss_pred             -CCceeeeEee--eccc-cCeeEEEEecCCeeeecCCcceEE
Q 047325          315 -GAIHTCLSVL--TGHT-GPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       315 -~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                       .+...++..+  ..|+ .+|.+..|.++|..++.+++...+
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv  152 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFV  152 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEE
Confidence             2222333333  3444 579999999999987766655443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.96  E-value=0.26  Score=43.55  Aligned_cols=115  Identities=10%  Similarity=0.102  Sum_probs=70.6

Q ss_pred             cCCCEeEEEEcCC----CCEEEEEeCCCcEEEEEcc-----CCeEEEEeecC-C----CceEEEEeCCCC-eEEEEcCCC
Q 047325          153 HSDAVSCMSLDQD----CGLLYTASWDRTFKVWRIS-----DSKCLESVSAH-D----DAVNSVVSSSEG-LIFTGSADG  217 (368)
Q Consensus       153 ~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~-~----~~v~~~~~~~~~-~l~~~~~dg  217 (368)
                      .-+.|..+.|.|-    ...+++......|.+|.+.     +++.+.....+ .    ---..+.|+|.. .|++-....
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            4456889999883    3456666677899999885     22222211111 1    112456799988 554444444


Q ss_pred             eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-CcEEEEeC
Q 047325          218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GLVNFWER  272 (368)
Q Consensus       218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~  272 (368)
                      .-.+++++....     .++.-....+.|.|.+|.+||+.|+.+-.. =.-++||-
T Consensus       135 vSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  135 VSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            445666664432     333344667889999999999987765433 24567874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.90  E-value=0.91  Score=38.48  Aligned_cols=163  Identities=10%  Similarity=0.081  Sum_probs=72.6

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC----CC-eEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA----DG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~----dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (368)
                      ..|.-.|+.+|+....+. ....+..+.++|.. .+++-+.    +. .-+||-++..+...  .++.... ....+.-=
T Consensus       168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~-~~e~~gHE  243 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KKVHRRM-EGESVGHE  243 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEE
T ss_pred             ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--eeeecCC-CCcccccc
Confidence            346666788877665555 45667788888877 3333332    22 23677776544311  1222111 22334444


Q ss_pred             EEcCCCCEEEEe-----cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC----------------eE
Q 047325          250 VVSSSRSIVYCG-----SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK----------------TI  308 (368)
Q Consensus       250 ~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------------~i  308 (368)
                      -|.|+|..|.--     ..+..|.-+|..+..... ........-.-.++|+++++-=+.|.                .|
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i  322 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI  322 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EEEE-SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence            688999866542     234456677777654321 12221222233346777766433332                46


Q ss_pred             EEEecCCCceeeeEee-------ecccc-CeeEEEEecCCeee
Q 047325          309 CVWRRDGAIHTCLSVL-------TGHTG-PVKCLAVEEDRDSS  343 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~-------~~h~~-~v~~l~~~~~~~~~  343 (368)
                      +++++..+....+...       .++.. .=-...|+||++.+
T Consensus       323 ~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~V  365 (386)
T PF14583_consen  323 YLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWV  365 (386)
T ss_dssp             EEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEE
T ss_pred             EEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEE
Confidence            6777766543333321       11111 12357999999953

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.77  E-value=0.91  Score=39.04  Aligned_cols=147  Identities=10%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             CCEeEEEEcCCCCEEEEEe-----------CCC-cEEEEEccC--Ce--EEEEeecCCCceEEEEeCCCCeEEEEcCCCe
Q 047325          155 DAVSCMSLDQDCGLLYTAS-----------WDR-TFKVWRISD--SK--CLESVSAHDDAVNSVVSSSEGLIFTGSADGT  218 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  218 (368)
                      .....|+|.++|+++++-.           ..+ .|.+++-..  |+  ....+.........+++.+++ |+++.....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            4456789999998776643           223 677776542  32  223343333456788998998 555555543


Q ss_pred             EEEEEcCCCCCCc-cc-ccceeecc----ccccEEEEEEcCCCCEEEEecCC-------------------CcEEEEeCC
Q 047325          219 VKVWKREQHGKGT-KH-SLAQTLLK----QECAVTALVVSSSRSIVYCGSSD-------------------GLVNFWERE  273 (368)
Q Consensus       219 i~i~d~~~~~~~~-~~-~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~~  273 (368)
                      .++.|........ .. .....+..    +......++|.|+|.+.++-+..                   |.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            3344554322211 11 11222222    23457789999999866654421                   334555554


Q ss_pred             CccccceeeeccceEE-EEEEeCCCEEEEee
Q 047325          274 KQLSHGGVLKGHKLAV-LCLAAAGKLVFSGS  303 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~  303 (368)
                      ..... ....++..+. ++++++++++++-.
T Consensus       173 g~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            43221 2222333222 66777787776644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=95.75  E-value=1.2  Score=39.93  Aligned_cols=141  Identities=14%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CCCEEEEEeCC--CcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC-eEEEEcCCC---eEEEEEcCCCCCCcccccc
Q 047325          165 DCGLLYTASWD--RTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSADG---TVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       165 ~~~~l~~~~~d--~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~  236 (368)
                      ++...+.|+.+  ..+..||..+++-.  ..+...... .+++.. ++ ..+.|+.++   .+..||.++..    ....
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~  391 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFG  391 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE-CCEEEEecCcCCCCccEEEEeCCCCE----EEeC
Confidence            56666777653  35778887655322  222211111 122222 44 556666543   46788876532    1111


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCC-----CeEEE
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSAD-----KTICV  310 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i  310 (368)
                      ............+.  -++++.+.|   |.+.+||.++.+-.. ...............++++.+.||.+     ..+..
T Consensus       392 ~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        392 PSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CCCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence            11111111112222  255666666   357788887543221 11111122223344578888888764     34666


Q ss_pred             EecCCC
Q 047325          311 WRRDGA  316 (368)
Q Consensus       311 w~~~~~  316 (368)
                      ||..+.
T Consensus       467 Yd~~~~  472 (480)
T PHA02790        467 YNNRTY  472 (480)
T ss_pred             EECCCC
Confidence            666554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.72  E-value=1.2  Score=41.21  Aligned_cols=114  Identities=9%  Similarity=0.029  Sum_probs=73.8

Q ss_pred             CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccC-------C----e---------EEEEeecCCCceEEEEeC--CCC-e
Q 047325          155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISD-------S----K---------CLESVSAHDDAVNSVVSS--SEG-L  209 (368)
Q Consensus       155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~-~  209 (368)
                      ..|+.|....  +...|+.|..||.|.+|.+++       .    +         +-..+. -...+++++++  ... +
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence            3455555543  556889999999999997632       1    0         111222 23467888887  555 8


Q ss_pred             EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---C---EEEEecCCCcEEEEeC
Q 047325          210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---S---IVYCGSSDGLVNFWER  272 (368)
Q Consensus       210 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  272 (368)
                      ||+++....|.+|-........   ....-..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERF---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEecccccc---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888888765431101   111122356678899987743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.71  E-value=0.56  Score=42.70  Aligned_cols=113  Identities=11%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeC--CCC-eEEEEcCCCeEEEEEcCCCC---CCc
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSS--SEG-LIFTGSADGTVKVWKREQHG---KGT  231 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~---~~~  231 (368)
                      -+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.  |++ .+++.+....|.++-....+   ...
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33334444444444445689999999887544333 346789999885  556 67777778888888642111   111


Q ss_pred             ccccceee--ccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          232 KHSLAQTL--LKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       232 ~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ....+..+  ..+ ..+|....|.++|..++.++  +.+.|+|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            11222222  222 25788999999987666543  568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.42  E-value=0.099  Score=44.41  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=96.9

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-Eee-cCCC----ceE-EEEeCCCC-eEEEEcCCCeEEEE-E
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVS-AHDD----AVN-SVVSSSEG-LIFTGSADGTVKVW-K  223 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~----~v~-~~~~~~~~-~l~~~~~dg~i~i~-d  223 (368)
                      ....|..+-..||++.++.-+. ..+.++++.+..... ++- ...+    .|+ .+.....| .++++..||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            4456778889999998887765 788899886543211 111 1111    122 11222344 67888899988776 5


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  303 (368)
                      .+..+. ......+.+.-....+..+.-..+.+-+++-+.+|++.++.....+..............+++|.+.++++- 
T Consensus       298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-  375 (733)
T COG4590         298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-  375 (733)
T ss_pred             eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-
Confidence            554432 222222333333344444444445567888888899888775544433333333456678899999988874 


Q ss_pred             CCCeEEEEecCCC
Q 047325          304 ADKTICVWRRDGA  316 (368)
Q Consensus       304 ~dg~i~iw~~~~~  316 (368)
                      ..|.++++.+++.
T Consensus       376 ~~gki~~~~l~Nr  388 (733)
T COG4590         376 DQGKIRLAQLENR  388 (733)
T ss_pred             cCCceEEEEecCC
Confidence            3567999988765

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.41  E-value=0.0014  Score=55.48  Aligned_cols=133  Identities=11%  Similarity=0.184  Sum_probs=96.3

Q ss_pred             EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      -++.++.+..+..||-..+...-...++....++|+  ++ .++.+-..+.+.+||+.+.........+.          
T Consensus        48 nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~----------  117 (615)
T KOG2247|consen   48 NLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT----------  117 (615)
T ss_pred             ceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc----------
Confidence            577888888999999776655444455667778887  44 45566778999999998764322111110          


Q ss_pred             cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEE
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT  212 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~  212 (368)
                                          |....  +.|++....++.+...|.+.|++..+.+.+.....|...+.++++.+.++.+.
T Consensus       118 --------------------~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  118 --------------------SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             --------------------chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence                                22222  67888888888888999999999888777777766889999999999987777


Q ss_pred             EcCCCeEE
Q 047325          213 GSADGTVK  220 (368)
Q Consensus       213 ~~~dg~i~  220 (368)
                      ++.|..+.
T Consensus       176 ~dcd~~L~  183 (615)
T KOG2247|consen  176 CDCDNTLS  183 (615)
T ss_pred             cCcHHHHH
Confidence            77665443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.41  E-value=0.1  Score=28.27  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=26.4

Q ss_pred             ccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCc
Q 047325          244 CAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       244 ~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~  275 (368)
                      +.+.++.|+|+.   .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999844   48888888899999999953

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=0.13  Score=48.73  Aligned_cols=135  Identities=11%  Similarity=-0.015  Sum_probs=83.0

Q ss_pred             CCEeEEEEcCCCCEEEEE--eCCCcEEEEEccCCeEE-----EEee------cCCCceEEEEeCCCC--eEEEEcCCCeE
Q 047325          155 DAVSCMSLDQDCGLLYTA--SWDRTFKVWRISDSKCL-----ESVS------AHDDAVNSVVSSSEG--LIFTGSADGTV  219 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~--~l~~~~~dg~i  219 (368)
                      -.+..+...+|+...++.  +.+-.|..||+++...-     .-+.      .......++.|+|.-  ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345556666675544433  33447889999753211     1111      122345677888865  67777889999


Q ss_pred             EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc--ccceeeeccceEEEEEEeC
Q 047325          220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL--SHGGVLKGHKLAVLCLAAA  295 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~  295 (368)
                      ++..+.....     .. .-.......++++|+|.|+.++.|...|++.-|...-..  .+..........+.++.|-
T Consensus       181 ~V~~~~~~~~-----~v-~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  181 RVKSTKQLAQ-----NV-TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhh-----hh-cccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEe
Confidence            9988764321     11 112345568999999999999999999999998755321  1111111124667777774

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.39  E-value=0.36  Score=38.95  Aligned_cols=99  Identities=19%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             cEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEe-cCCCceee
Q 047325          245 AVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR-RDGAIHTC  320 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~  320 (368)
                      .+.+.+++++++.++...   ....++++.....  ......+....--++++++...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688899999999777655   3334555554432  22233444444466777877777767677777774 22222222


Q ss_pred             eE-eeeccccCeeEEEEecCCeeeec
Q 047325          321 LS-VLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       321 ~~-~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .. ....-...|+++.+||||..+|.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~  128 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAV  128 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEE
Confidence            11 11111228999999999997764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.36  E-value=2.6  Score=40.00  Aligned_cols=296  Identities=14%  Similarity=0.152  Sum_probs=147.0

Q ss_pred             CCcEEEEEecC-----C---EEEEccCCCcEEEEcCC--ccee-----cccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           44 EGHIYSLAASK-----D---LLYTGSDSKNIRVWKNL--KEFC-----GFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        44 ~~~i~~~~~~~-----~---~l~s~~~dg~i~iw~~~--~~~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      +..|.|++++|     +   +++.|..+..+++--..  ....     ....-...|....+.  ..+|+++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            45688998762     2   78888887776664321  1111     111222334444444  579999999999988


Q ss_pred             EeecCCCcccc--c--cCCccccceeeeeccCCCCceeEecccceeeeeecCCC----------EeE-EEEcCC--CCEE
Q 047325          107 WKISPKNQSVH--K--RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA----------VSC-MSLDQD--CGLL  169 (368)
Q Consensus       107 w~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v~~-~~~~~~--~~~l  169 (368)
                      +-++...-...  .  ..+..|..-..+.. ......+.....+...+ .+++.          +.. ..|+.+  ...+
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s-k~~t~vfa~sdrP~viY-~~n~kLv~spls~kev~~~c~f~s~a~~d~l  687 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSS-KSRTAVFALSDRPTVIY-SSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL  687 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEee-CCceEEEEeCCCCEEEE-ecCCcEEEeccchHHhhhhcccccccCCceE
Confidence            76654432221  1  12222211111111 01111111122221111 12111          111 112211  2345


Q ss_pred             EEEeCCCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEEcC-----------C---CeEEEEEcCCCCCCcc
Q 047325          170 YTASWDRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTGSA-----------D---GTVKVWKREQHGKGTK  232 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~-----------d---g~i~i~d~~~~~~~~~  232 (368)
                      +.+. .+.+++.-+..-+.  ++++.- ......+++.+.. .+.+.+.           .   ..++++|.++...   
T Consensus       688 ~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v---  762 (1096)
T KOG1897|consen  688 ASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV---  762 (1096)
T ss_pred             EEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE---
Confidence            5554 45677776544322  233332 2344566666643 3322221           1   1355555544311   


Q ss_pred             cccceeeccc--cccEEEEEEcCC-CCEEEEec----------CCCcEEEEeCCCccccceeeecc--ceEEEEEE-eCC
Q 047325          233 HSLAQTLLKQ--ECAVTALVVSSS-RSIVYCGS----------SDGLVNFWEREKQLSHGGVLKGH--KLAVLCLA-AAG  296 (368)
Q Consensus       233 ~~~~~~~~~~--~~~i~~~~~~~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~-~~~  296 (368)
                       .....+...  ...+.++.|..| +.+++.|.          ..|.|.+|.+.....+ .....+  .+.+.++. ++|
T Consensus       763 -l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~fng  840 (1096)
T KOG1897|consen  763 -LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEFNG  840 (1096)
T ss_pred             -EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhhCC
Confidence             111111111  134555668776 56777775          2578888887762222 122222  23344444 477


Q ss_pred             CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          297 KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      ++||.  -...|++|++.+.  +.++.-..|..++..+...-.+..++.+|-...+
T Consensus       841 kllA~--In~~vrLye~t~~--~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si  892 (1096)
T KOG1897|consen  841 KLLAG--INQSVRLYEWTTE--RELRIECNISNPIIALDLQVKGDEIAVGDLMRSI  892 (1096)
T ss_pred             eEEEe--cCcEEEEEEcccc--ceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence            77764  4568999988776  4555556788889999888888888888755444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.21  E-value=1.2  Score=41.20  Aligned_cols=166  Identities=13%  Similarity=0.193  Sum_probs=91.7

Q ss_pred             CCcEEEEEecCCEEEEccCCCcEEEEcCCccee--------cc----------------cCCCCCeeEEEEe----CCEE
Q 047325           44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--------GF----------------KASSGLVKAIVIS----GEKI   95 (368)
Q Consensus        44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--------~~----------------~~~~~~v~~~~~~----~~~l   95 (368)
                      .+..+++.- .++++.|. .+.|.||+......        .+                ......|+.|...    .+.|
T Consensus        40 KNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL  117 (717)
T PF08728_consen   40 KNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL  117 (717)
T ss_pred             ccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence            444555544 66666654 67899998542111        00                0012235555544    4589


Q ss_pred             EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc--CCCCEEEEEe
Q 047325           96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD--QDCGLLYTAS  173 (368)
Q Consensus        96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~  173 (368)
                      +.|..||.|.+|.++.--.............  .......           ..........+++++++  ...++||+++
T Consensus       118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~--~~r~~i~-----------P~f~~~v~~SaWGLdIh~~~~~rlIAVSs  184 (717)
T PF08728_consen  118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSG--FSRLKIK-----------PFFHLRVGASAWGLDIHDYKKSRLIAVSS  184 (717)
T ss_pred             EEEecCCeEEEEEHHHHHHHHHhhccccccc--cccccCC-----------CCeEeecCCceeEEEEEecCcceEEEEec
Confidence            9999999999998743211110000000000  0000000           01111244588999998  7778888888


Q ss_pred             CCCcEEEEEccCC--eEEE-EeecCCCceEEEEeCCC-----C--eEEEEcCCCeEEEEEc
Q 047325          174 WDRTFKVWRISDS--KCLE-SVSAHDDAVNSVVSSSE-----G--LIFTGSADGTVKVWKR  224 (368)
Q Consensus       174 ~d~~i~iwd~~~~--~~~~-~~~~~~~~v~~~~~~~~-----~--~l~~~~~dg~i~i~d~  224 (368)
                      ....|.||-....  +... .-..+...|.++.|.++     |  .+++++-.|.+.+|++
T Consensus       185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888887755331  1111 01124556778877654     3  6777888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.20  E-value=0.11  Score=28.17  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=25.3

Q ss_pred             CEeEEEEcCCC---CEEEEEeCCCcEEEEEccC
Q 047325          156 AVSCMSLDQDC---GLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       156 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~  185 (368)
                      .|.+++|+|+.   .+|+.+-.-|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.07  E-value=0.87  Score=36.51  Aligned_cols=104  Identities=10%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             EEEEcCCC-CEEEEecCCCc-EEEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCC-----CeEEEEecCCCc
Q 047325          248 ALVVSSSR-SIVYCGSSDGL-VNFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSAD-----KTICVWRRDGAI  317 (368)
Q Consensus       248 ~~~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~  317 (368)
                      .++++|.. .-++.+-.-|+ ..++|......+.....   .|-..--.|++||.+|++.-.|     |.|-|||.+.. 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-
Confidence            45566633 23444444443 56788776655532221   1222224689999999986543     78999999854 


Q ss_pred             eeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      ...+.++..|.-....+.+.+||+.++.+++.+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet  185 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET  185 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence            56788899999899999999999998887775543

>PRK13684 Ycf48-like protein; Provisional

Probab=95.01  E-value=1.9  Score=36.49  Aligned_cols=152  Identities=9%  Similarity=0.039  Sum_probs=77.1

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEE-EccCCeEEEEe-ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVW-RISDSKCLESV-SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ...+.++.+.|++.+++++. .|.+..- |- .++.-..+ ......+.++.+.+++.++..+..|.+++=..+.+   .
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G---~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL---E  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC---C
Confidence            34678889999876665554 5655432 21 22222222 23346788999999885555566777653222221   1


Q ss_pred             ccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee--eccceEEEEEE-eCCCEEEEeeCCCe
Q 047325          232 KHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLA-AAGKLVFSGSADKT  307 (368)
Q Consensus       232 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~~~~~dg~  307 (368)
                      ........ ......+..+.+.|++..++++ .+|.+.. ....++.-....  ..-......+. .+++..+..+..|.
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~  324 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV  324 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence            11111110 1122457888999877765554 5675543 333222211111  11111232222 24445555677888


Q ss_pred             EEEEe
Q 047325          308 ICVWR  312 (368)
Q Consensus       308 i~iw~  312 (368)
                      |..|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            88774

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.99  E-value=1.8  Score=37.28  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             ceEEEEeCCCCeEEEEc------------CCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          198 AVNSVVSSSEGLIFTGS------------ADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       198 ~v~~~~~~~~~~l~~~~------------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ....|+|.++|.|+++.            ..+ .|.+++-..... . ......+...-.....+++.+++  |+++...
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-~-~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-K-YDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-C-cceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            45678888888554443            223 676665433211 0 01112222223346788898888  4444444


Q ss_pred             CcEEEEeCCCc-------cccceeee------ccceEEEEEEeCCCEEEEeeCC-------------------CeEEEEe
Q 047325          265 GLVNFWEREKQ-------LSHGGVLK------GHKLAVLCLAAAGKLVFSGSAD-------------------KTICVWR  312 (368)
Q Consensus       265 g~i~i~d~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d-------------------g~i~iw~  312 (368)
                      ...++.|....       +.+...+.      .|...-+.+.|||.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            43334354321       11111111      2333446777888876654421                   3444454


Q ss_pred             cCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325          313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC  349 (368)
Q Consensus       313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  349 (368)
                      .+....+   .+.........++|+|+|.++.+....
T Consensus       171 pdg~~~e---~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLR---VVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEE---EEecCcCCCccceECCCCCEEEEccCC
Confidence            4443222   222222345789999999876654433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=0.58  Score=44.78  Aligned_cols=186  Identities=10%  Similarity=0.050  Sum_probs=102.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCC-------e---------EEEEeecC-CCceEEEEeCCCC---eEEEEcCCCe
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDS-------K---------CLESVSAH-DDAVNSVVSSSEG---LIFTGSADGT  218 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~---------~~~~~~~~-~~~v~~~~~~~~~---~l~~~~~dg~  218 (368)
                      .++.++....+++++..+.+.++-..+-       .         ....++-| ..++..+...+|+   .++..+.+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            3455555556666666665655543211       0         11222222 2345556666665   3344444557


Q ss_pred             EEEEEcCCCCCCccc--ccc---eeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccccee-eeccceEEEE
Q 047325          219 VKVWKREQHGKGTKH--SLA---QTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLC  291 (368)
Q Consensus       219 i~i~d~~~~~~~~~~--~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~  291 (368)
                      |..||++........  .++   ...........++.|.|.-. ..+....|+.|++..+......... .........+
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~  205 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL  205 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence            899999865331100  000   01111223345677777432 4556678888988876643322222 2234455577


Q ss_pred             EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeeee
Q 047325          292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~  344 (368)
                      |++.|+.++.|-..|++.-|.........+.....- ...|.+|+|-....+++
T Consensus       206 WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  206 WSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             eccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            888899999999999999996543211111111111 35799999998888655

>PHA02790 Kelch-like protein; Provisional

Probab=94.99  E-value=2.1  Score=38.43  Aligned_cols=150  Identities=12%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC--CeEEEEEcCCCCCCcccc
Q 047325          165 DCGLLYTASWDR-----TFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD--GTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       165 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~  234 (368)
                      ++..+++|+.++     .+..||..+++-..  .+....... +++. -++ ..+.|+.+  ..+..||...+.    ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~~iYviGG~~~~~sve~ydp~~n~----W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANNKLYVVGGLPNPTSVERWFHGDAA----WV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECCEEEEECCcCCCCceEEEECCCCe----EE
Confidence            345667776543     46678887765322  221111111 2222 245 55666653  357788875431    11


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      ....+.........+..  ++++.+.|+.++   .+..||.++..-... ..............++++.+.|+   .+.+
T Consensus       345 ~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~  419 (480)
T PHA02790        345 NMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEF  419 (480)
T ss_pred             ECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEE
Confidence            11122111111222222  567777777553   467888765432111 11111111223345777777774   5778


Q ss_pred             EecCCCceeeeEeee
Q 047325          311 WRRDGAIHTCLSVLT  325 (368)
Q Consensus       311 w~~~~~~~~~~~~~~  325 (368)
                      ||.++..+..+..+.
T Consensus       420 ydp~~~~W~~~~~m~  434 (480)
T PHA02790        420 YCESSNTWTLIDDPI  434 (480)
T ss_pred             ecCCCCcEeEcCCCC
Confidence            988877666555443

>PLN02193 nitrile-specifier protein

Probab=94.96  E-value=2.6  Score=37.73  Aligned_cols=153  Identities=10%  Similarity=0.040  Sum_probs=73.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeEEEEeec---C-CCceEEEEeCCCCeEEEEcCC-----CeEEEEEcCCCCCC
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKCLESVSA---H-DDAVNSVVSSSEGLIFTGSAD-----GTVKVWKREQHGKG  230 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  230 (368)
                      ++.+++.|+.+     ..+..||+.+.+=...-..   . ...-.+++...+.+++.|+.+     ..+..||+.+..- 
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW-  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE-
Confidence            34555666544     3578889877543221110   1 111122222233355566544     3466777764311 


Q ss_pred             ccccccee---eccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccccceee----eccceEEEEEEeCCCEE
Q 047325          231 TKHSLAQT---LLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLSHGGVL----KGHKLAVLCLAAAGKLV  299 (368)
Q Consensus       231 ~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  299 (368)
                         .....   ............+  ++++++.++.+    ..+.+||+.+..-.....    ........+...+++++
T Consensus       307 ---~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy  381 (470)
T PLN02193        307 ---FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV  381 (470)
T ss_pred             ---EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence               11100   0011111112222  56677766655    458899987643221110    11111223344577888


Q ss_pred             EEeeCC--------------CeEEEEecCCCceeeeEe
Q 047325          300 FSGSAD--------------KTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       300 ~~~~~d--------------g~i~iw~~~~~~~~~~~~  323 (368)
                      +.|+.+              +.+.+||+.+.....+..
T Consensus       382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             EECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence            888853              247888887776655543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.86  E-value=1.7  Score=38.81  Aligned_cols=152  Identities=11%  Similarity=0.084  Sum_probs=84.0

Q ss_pred             CCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-----eEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-----LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~  227 (368)
                      .++..++|....+.+++.-  .+|.+++=|   .+.+..|    ..|..+.|.|-+     .|++......|.+|.+...
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4678888874444444432  234443322   1233333    468899998864     5667777889999998643


Q ss_pred             CCCcccccceeecccc----ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEE
Q 047325          228 GKGTKHSLAQTLLKQE----CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFS  301 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~  301 (368)
                      ................    --...+.|+|....|+.-.....-.+++.+.........-...+.|  .|+..||+.|++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence            3211111121111111    1124578999988888766655555666653322222222334444  556668887776


Q ss_pred             eeCC-CeEEEEec
Q 047325          302 GSAD-KTICVWRR  313 (368)
Q Consensus       302 ~~~d-g~i~iw~~  313 (368)
                      +-.. =.-+|||-
T Consensus       173 AvGSsLHSyiWd~  185 (671)
T PF15390_consen  173 AVGSSLHSYIWDS  185 (671)
T ss_pred             EeCCeEEEEEecC
Confidence            6433 34677863

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.84  E-value=1.7  Score=34.90  Aligned_cols=176  Identities=13%  Similarity=0.063  Sum_probs=97.5

Q ss_pred             CEeEEEEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeecCC-CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          156 AVSCMSLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSAHD-DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. -.--.++...+......=.++...+||..+..    
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~----  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK----  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce----
Confidence            345788877777777777665  79999999998876655332 22334555555555555678899999997642    


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-eeccceEEEEE---Ee-CCCEEEEeeCCCe
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLCL---AA-AGKLVFSGSADKT  307 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~---~~-~~~~l~~~~~dg~  307 (368)
                        ....+. ..+.=..++  .+++.|+.......++++|.++.+..... ......++..+   -+ +|.+.|=.-....
T Consensus       122 --~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~  196 (264)
T PF05096_consen  122 --KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR  196 (264)
T ss_dssp             --EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred             --EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence              222222 122334555  36777887777788999998764433221 11222333222   22 5555554555556


Q ss_pred             EEEEecCCCceeeeEeee---------------ccccCeeEEEEecCCee
Q 047325          308 ICVWRRDGAIHTCLSVLT---------------GHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~---------------~h~~~v~~l~~~~~~~~  342 (368)
                      |..-|..++  +.+..+.               .-..-.+.||+.|+...
T Consensus       197 I~~Idp~tG--~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  197 IVRIDPETG--KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             EEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             EEEEeCCCC--eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            666666555  3333221               01345889999887664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.80  E-value=1.6  Score=34.66  Aligned_cols=144  Identities=11%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-C--CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-D--GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       178 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      -.+||+.+++....--..+..+.+-.+.++| .+.+|+. +  ..+++++......................-.+...-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4578888776433222222233334677888 6666665 2  3588888654111111111111112223344555678


Q ss_pred             CCCEEEEecCCCc-EEEEeCCCc-cccce--e-------eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325          254 SRSIVYCGSSDGL-VNFWEREKQ-LSHGG--V-------LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS  322 (368)
Q Consensus       254 ~~~~l~~~~~dg~-i~i~d~~~~-~~~~~--~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  322 (368)
                      ||+.|+.|+.+.- ..+|..+.. .....  .       ....-.+.+-+.|+|++++.+..+..  |||....  +.++
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n--~v~~  203 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTN--TVVR  203 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCC--eEEe
Confidence            9999999887753 344443211 11100  0       11223345677889999999887654  5566665  3344


Q ss_pred             eee
Q 047325          323 VLT  325 (368)
Q Consensus       323 ~~~  325 (368)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.77  E-value=2.3  Score=36.33  Aligned_cols=53  Identities=8%  Similarity=0.095  Sum_probs=34.7

Q ss_pred             CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325           63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      .+.+.++|+.+. ...+......+....|+  |+.++... ++.|.+++..++....
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            457888898864 33333335677777787  77777665 6789999887774433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.76  E-value=2  Score=35.52  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          194 AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       194 ~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      ...+.+..+...++| +++++.......-||.-..      .-..........|..+.|.|++.+.+.+ ..|.|+.=+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc------cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            345678888889999 5555555555567775321      1122223345789999999998766655 7888888772


Q ss_pred             C-Cccccc---eeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCe
Q 047325          273 E-KQLSHG---GVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       273 ~-~~~~~~---~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      . ......   .........++.+.+. .+.+.+++..|.+.+= .+.+ +.+.......-...++.|.|.++.+
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S-~DgGktW~~~~~~~~~~~n~~~i~f~~~~~  288 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS-TDGGKTWQKDRVGENVPSNLYRIVFVNPDK  288 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE-SSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe-CCCCccceECccccCCCCceEEEEEcCCCc
Confidence            2 111111   1111223335666653 3444445556655442 2332 2232222223345588888877655

>PLN02153 epithiospecifier protein

Probab=94.67  E-value=2.4  Score=36.05  Aligned_cols=57  Identities=7%  Similarity=0.014  Sum_probs=30.5

Q ss_pred             CcEEEEeCCCccccceee----eccceEEEEEEeCCCEEEEeeCC--------------CeEEEEecCCCceeee
Q 047325          265 GLVNFWEREKQLSHGGVL----KGHKLAVLCLAAAGKLVFSGSAD--------------KTICVWRRDGAIHTCL  321 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~~  321 (368)
                      ..+.+||+.+.+-.....    ........+...++++++.|+..              +.+..+|.++.....+
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~  291 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL  291 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence            458889987643221111    11112223344577888888852              2567777776654433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.67  E-value=1.1  Score=39.09  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=80.2

Q ss_pred             EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--------eEEEEcCCCeEEEEEcCCCCCCccccccee-ec
Q 047325          170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--------LIFTGSADGTVKVWKREQHGKGTKHSLAQT-LL  240 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~  240 (368)
                      ..++....++-.|++.|+.+.....|...  -+.+.|..        .-++|-++..|.-.|.|..+..  ...... -.
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK--i~v~esKdY  559 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK--IKVVESKDY  559 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc--eeeeeehhc
Confidence            34455567778888999999988877665  45666653        3456667777777787765420  001100 00


Q ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .......+..-. ..-++++++..|.|++||.-. ......+.+-...|  ..++.+|+++++.+. ..+.+-|+.
T Consensus       560 ~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         560 KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccc-cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            111222222222 345899999999999999543 22223333333333  555668887776553 466666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.65  E-value=0.41  Score=37.52  Aligned_cols=83  Identities=14%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           83 GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        83 ~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      .++..+...+++|++.+.+|.+++||+.+.+....... ..+...... .          ..      ......|..+.+
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~-~----------~~------~~~~~~i~~~~l   74 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSP-V----------SD------KSSSPNITSCSL   74 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccc-c----------cc------CCCCCcEEEEEE
Confidence            35556666789999999999999999988765433310 000000000 0          00      025577888888


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcc
Q 047325          163 DQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      +.+|.-+++-+ +|....||..
T Consensus        75 t~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   75 TSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             cCCCCEEEEEe-CCCEEEeccc
Confidence            88887776665 5788888864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.51  E-value=4.3  Score=38.22  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             cCCCEeEEEEcCC---CCEEEEEeCCCcEEEEEccCC
Q 047325          153 HSDAVSCMSLDQD---CGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       153 ~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      +...|..+.|+|.   +..|++-..|+.+++||+...
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            4568899999995   578999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=4  Score=37.66  Aligned_cols=177  Identities=11%  Similarity=0.083  Sum_probs=91.2

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeE
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIE  141 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (368)
                      -.|+|++.... +.......+.+..+.|+ .+.|+....||++.+|++-....... ..+..                  
T Consensus        64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e------------------  124 (829)
T KOG2280|consen   64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFE------------------  124 (829)
T ss_pred             eeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccc------------------
Confidence            35888887644 33444444588899999 78899999999999999875542221 11000                  


Q ss_pred             ecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---CCCceEEEEeCCCC----eEEEEc
Q 047325          142 VRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---HDDAVNSVVSSSEG----LIFTGS  214 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~----~l~~~~  214 (368)
                                .....|..+.+..+|-.++  ..+|.+.+-.-.....+.+++.   ...+-.|-...+++    .++-..
T Consensus       125 ----------~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~  192 (829)
T KOG2280|consen  125 ----------SQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD  192 (829)
T ss_pred             ----------cccCceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec
Confidence                      0223344444444553333  3345554443222222222222   11121232222222    111111


Q ss_pred             -CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          215 -ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       215 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                       ..+ ..++.......     ....+......+..+..+|+.++|+.=..+|.|.+-+.+..+.
T Consensus       193 ~~v~-~~~~q~~~~~~-----q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~  250 (829)
T KOG2280|consen  193 VAVG-LHICQVEESRV-----QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI  250 (829)
T ss_pred             hhhh-hcccceecccc-----cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence             111 11111111100     1112222245678899999999999999999999988765443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.45  E-value=1.8  Score=36.63  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---EEEe----ecCCCceEEEEeCCC----CeEEEEcC-------C-
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC---LESV----SAHDDAVNSVVSSSE----GLIFTGSA-------D-  216 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~l~~~~~-------d-  216 (368)
                      ..+.|+|.|++.+++ +...|.|++++ ..+..   +..+    .........++++|+    +.|++...       . 
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987655 56699999999 44443   2222    123456789999994    53333332       1 


Q ss_pred             -CeEEEEEcCCCCC--Ccccccceeecc---ccccEEEEEEcCCCCEEEEecC
Q 047325          217 -GTVKVWKREQHGK--GTKHSLAQTLLK---QECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       217 -g~i~i~d~~~~~~--~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                       ..|.-|.......  ............   ....-..|.|.|++.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             2344444433211  011111111111   2344567999999976666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.30  E-value=3.2  Score=35.82  Aligned_cols=107  Identities=17%  Similarity=0.206  Sum_probs=65.9

Q ss_pred             eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325           91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY  170 (368)
Q Consensus        91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  170 (368)
                      .+..++.+..||.|.-.|.+++..........                              ....+..-.+..+|+ ++
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~------------------------------~~~~~~~~~~~~~G~-i~  115 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG------------------------------AVAQLSGPILGSDGK-IY  115 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcC------------------------------cceeccCceEEeCCe-EE
Confidence            36677777889988888888887543322211                              000111111112554 77


Q ss_pred             EEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCC
Q 047325          171 TASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEGLIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  228 (368)
                      .++.++.+..+|.++|+.+-...... ..+..-....++.++.++.++.+.-.|..++.
T Consensus       116 ~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~  174 (370)
T COG1520         116 VGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGT  174 (370)
T ss_pred             EecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCc
Confidence            88888999999998999888777655 12222233344566666677888888777653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.22  E-value=5.3  Score=38.11  Aligned_cols=245  Identities=9%  Similarity=0.057  Sum_probs=119.5

Q ss_pred             cEEEEcCCcceecccCCCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEec
Q 047325           65 NIRVWKNLKEFCGFKASSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR  143 (368)
Q Consensus        65 ~i~iw~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (368)
                      .||+.+-......+....+...+.++ +...++.++.++.+...++...........                       
T Consensus       471 ~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~-----------------------  527 (1096)
T KOG1897|consen  471 SIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK-----------------------  527 (1096)
T ss_pred             cEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh-----------------------
Confidence            35555544333333333333333333 355677777777777777766542111111                       


Q ss_pred             ccceeeeeecCCCEeEEEEcCC---C---CEEEEEeCCCcEEEEE-ccCCeEEEEe--ec--CCCceEEEEeCCCC-eEE
Q 047325          144 RHRTALWIRHSDAVSCMSLDQD---C---GLLYTASWDRTFKVWR-ISDSKCLESV--SA--HDDAVNSVVSSSEG-LIF  211 (368)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~~~~---~---~~l~~~~~d~~i~iwd-~~~~~~~~~~--~~--~~~~v~~~~~~~~~-~l~  211 (368)
                              .....|.|+.++|-   .   +++++|..+..+.+.- +.....+...  ..  -...|.-..+-.+. +|.
T Consensus       528 --------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl  599 (1096)
T KOG1897|consen  528 --------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL  599 (1096)
T ss_pred             --------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence                    14568999999973   2   2788888776555443 2333322222  11  12234344455544 999


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC  291 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  291 (368)
                      ++..||.+..|-+.......  ...+...-...++.--.|+..++.-+-+..|.-..+|..+........-...-..+..
T Consensus       600 valgdG~l~~fv~d~~tg~l--sd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~  677 (1096)
T KOG1897|consen  600 VALGDGALLYFVLDINTGQL--SDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCP  677 (1096)
T ss_pred             EEcCCceEEEEEEEcccceE--ccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcc
Confidence            99999999887765432200  0111111223344444455444433334445555555544322211111111112222


Q ss_pred             EEeC--CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          292 LAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       292 ~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      ++.+  +..|+++. .+.+++..++.-....+++.. -......+++.+....++
T Consensus       678 f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~  730 (1096)
T KOG1897|consen  678 FNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFG  730 (1096)
T ss_pred             cccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEE
Confidence            3322  34555554 456778777655444455543 334567777777555433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=1.6  Score=37.55  Aligned_cols=103  Identities=6%  Similarity=0.069  Sum_probs=68.9

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE----EEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL----ESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  228 (368)
                      ..++|.++.|++|.+.+++--.+.+|.+++....+..    .+.+.....|....|..+..++..... .+.+|......
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~-G~e~y~v~pek  143 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ-GIEFYQVLPEK  143 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC-CeEEEEEchhh
Confidence            4579999999999999999999999999987433322    223334556888899877655554433 35666554322


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                           ..++....+...|.-..|.++.+.++.+
T Consensus       144 -----rslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  144 -----RSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             -----hhhhhhhhcccCccEEEEccccceEeee
Confidence                 2344555666777777788877654433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.13  E-value=4.3  Score=36.75  Aligned_cols=248  Identities=10%  Similarity=0.102  Sum_probs=116.4

Q ss_pred             CCEEEEccCCCcEEEEcCCcce----ecccCC-CCCeeEEEEe-CC--EEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325           54 KDLLYTGSDSKNIRVWKNLKEF----CGFKAS-SGLVKAIVIS-GE--KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT  125 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~~----~~~~~~-~~~v~~~~~~-~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  125 (368)
                      ++.++-+..+|.+..-.+...-    ...-+. .....++.+- +.  +|+.|+.-|.=.++.+..........      
T Consensus       222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~------  295 (504)
T PF10433_consen  222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDS------  295 (504)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEE------
T ss_pred             CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEe------
Confidence            3477778899988877654321    122222 4556677766 55  89999886665555555222111110      


Q ss_pred             ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC----CC------EEEEEe---CCCcEEEEEccCCeEEE--
Q 047325          126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD----CG------LLYTAS---WDRTFKVWRISDSKCLE--  190 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~d~~i~iwd~~~~~~~~--  190 (368)
                                               ...-++|.++++.+.    ..      .|++++   .+|.+++..  .|-...  
T Consensus       296 -------------------------~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~  348 (504)
T PF10433_consen  296 -------------------------LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGL  348 (504)
T ss_dssp             -------------------------E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--
T ss_pred             -------------------------ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceee
Confidence                                     114567888777531    11      555554   467888874  332222  


Q ss_pred             Ee--ecC--CCceEEEEeCC--CCeEEEEcCCCeEEEEEcCCCCCCcccccc--eeeccccccEEEEEEcCCCCEEEEec
Q 047325          191 SV--SAH--DDAVNSVVSSS--EGLIFTGSADGTVKVWKREQHGKGTKHSLA--QTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       191 ~~--~~~--~~~v~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      ..  ...  -..++.+....  +.+|+.+..+ .-+++.+...+........  ..+......+.+-.+.  ++.++=..
T Consensus       349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt  425 (504)
T PF10433_consen  349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT  425 (504)
T ss_dssp             EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred             eeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence            11  111  23445555443  2256555544 4456555410000000000  0122222233333332  34444444


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee---ccccCeeEEEEec
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT---GHTGPVKCLAVEE  338 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~l~~~~  338 (368)
                      .. .|++.+....+............+.+.+.++.+++.+-.++.+..+.++.........-.   .....|.|+...|
T Consensus       426 ~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  426 PK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SS-EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             cC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            33 478888766554433444456667777788888888888999999988765332111111   1456788888766

...

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.06  E-value=2.7  Score=34.08  Aligned_cols=167  Identities=6%  Similarity=0.038  Sum_probs=97.2

Q ss_pred             ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      ..+-...+.++.|+  .+.|++......-.|+=-..++..........                               .
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------------------------~  129 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------------------------S  129 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------------------------C
Confidence            34555569999998  56677776666666665555554443332211                               1


Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----------EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----------SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~  224 (368)
                      ..-.+.+..+++++++--.++.+.++.+.......          .....+.....++|.|.+ .|+.+-+..-+.||..
T Consensus       130 DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         130 DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence            22346666677777766677777777665442111          111225567789999988 7777777777777776


Q ss_pred             CCCCCCcccccceee----ccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCc
Q 047325          225 EQHGKGTKHSLAQTL----LKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      ...............    .-.-..+.++.|++ .+..|+-+.+++.+.-.|....
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            643211100000000    00123467788887 4556677777787777777643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.02  E-value=2.7  Score=34.03  Aligned_cols=231  Identities=13%  Similarity=0.110  Sum_probs=127.7

Q ss_pred             CCcEEEEEecCCEEEEccCCCcEEEEcCCccee----cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC----GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .+-+..+.+++++...+..+.-++|.|+..+..    .+-.-.+--.++..+|++...+..|.-+.+.|+.+.......-
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag  165 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG  165 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence            445667788899888888888899999864322    1112225567777889999999977778889998765322111


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCC
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHD  196 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~  196 (368)
                      ..                             ......-..++++  |++-..+..|+-+.+.|+....   .+.... ..
T Consensus       166 ry-----------------------------a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g  213 (370)
T COG5276         166 RY-----------------------------ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TG  213 (370)
T ss_pred             ee-----------------------------ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cC
Confidence            10                             0011222345554  6677778889999999987543   233322 23


Q ss_pred             CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          197 DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       197 ~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      ..+.++..+++..+++-. +-.+.+-|.......    ...-....+.  .++.+..  .+++......+.-+.+-|..+
T Consensus       214 ~g~~sv~vsdnr~y~vvy-~egvlivd~s~~ssp----~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         214 PGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPSSP----TVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             CceEEEEecCCeeEEEEc-ccceEEEecCCCCCc----eEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence            367888888776333333 334666676654220    1111111111  2222233  456666666666667777665


Q ss_pred             ccccc--eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          275 QLSHG--GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       275 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +..+.  ..+.........+...+.++..+..+ ...+-+..
T Consensus       287 p~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s  327 (370)
T COG5276         287 PPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDAS  327 (370)
T ss_pred             CCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCC
Confidence            43321  11111111233444556666666555 34444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.88  E-value=0.67  Score=36.38  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=46.5

Q ss_pred             CcEEEEEecCCEEEEccCCCcEEEEcCCcceeccc----------------CCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           45 GHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFK----------------ASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        45 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------------~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      .++..+...+++|++-..+|.+++||+.+....+.                .....|..+.++  |.-+++- .+|....
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~   91 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS   91 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence            35666888899999999999999999875433221                345667777776  4444444 4678888


Q ss_pred             EeecCC
Q 047325          107 WKISPK  112 (368)
Q Consensus       107 w~~~~~  112 (368)
                      |+.+-+
T Consensus        92 y~~~L~   97 (219)
T PF07569_consen   92 YSPDLG   97 (219)
T ss_pred             eccccc
Confidence            876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.58  E-value=4.8  Score=35.37  Aligned_cols=157  Identities=13%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             EeEEEEcCCCCEEEEEeCC----CcEEEEEccCC----eEEEEeecCCCce-EEEEeCCCC-eEEEEc---CCCeEEEEE
Q 047325          157 VSCMSLDQDCGLLYTASWD----RTFKVWRISDS----KCLESVSAHDDAV-NSVVSSSEG-LIFTGS---ADGTVKVWK  223 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~---~dg~i~i~d  223 (368)
                      ...+..++++++++.....    ..+.+.|+..+    .....+......+ ..+... .+ +++...   .++.|.-.+
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~  307 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD  307 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence            5678889999987764432    35788888764    2233333333333 334333 44 333332   246777777


Q ss_pred             cCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEE-EecCCC--cEEEEeCC-CccccceeeeccceEEEEEEe--C
Q 047325          224 REQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVY-CGSSDG--LVNFWERE-KQLSHGGVLKGHKLAVLCLAA--A  295 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~dg--~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~--~  295 (368)
                      +......   .....+..+..  .+..+...  +++|+ .-..++  .|+++++. ..... .......+.+..++.  +
T Consensus       308 l~~~~~~---~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~~~~p~~g~v~~~~~~~~  381 (414)
T PF02897_consen  308 LADPSPA---EWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESR-EIPLPEAGSVSGVSGDFD  381 (414)
T ss_dssp             TTSTSGG---GEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEE-EEESSSSSEEEEEES-TT
T ss_pred             ccccccc---cceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEe-eecCCcceEEeccCCCCC
Confidence            7655321   01113333433  45555443  44444 444444  57888988 43333 222223344444443  3


Q ss_pred             CC-EEEEeeC---CCeEEEEecCCCceee
Q 047325          296 GK-LVFSGSA---DKTICVWRRDGAIHTC  320 (368)
Q Consensus       296 ~~-~l~~~~~---dg~i~iw~~~~~~~~~  320 (368)
                      ++ +.++-+.   -+++..||+.+++...
T Consensus       382 ~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  382 SDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             -SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            33 2222222   3567777777664443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.50  E-value=1.3  Score=38.35  Aligned_cols=77  Identities=12%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE----EEeCC-------------C-C--eE
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS----VVSSS-------------E-G--LI  210 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~----~~~~~-------------~-~--~l  210 (368)
                      ......+.++..+|++++.++...-|.|.++|+.++..++.+++-.+.=..    ..-..             . .  ++
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            345566889999999999888888899999999999888777764432111    11000             1 1  33


Q ss_pred             EEEcCCCeEEEEEcCCC
Q 047325          211 FTGSADGTVKVWKREQH  227 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~~~  227 (368)
                      +-+-.-|.|.+|.++.+
T Consensus       384 IyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQG  400 (415)
T ss_pred             EEeccCCeEEEEecCCC
Confidence            44556788899998865

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.45  E-value=3.3  Score=33.21  Aligned_cols=146  Identities=10%  Similarity=0.104  Sum_probs=90.6

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      .-..++-.|||..-+++...+.|--.|..+|+....--+....-..+...||+-.........|.-.|.++... .++  
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev-t~f--  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV-TRF--  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce-EEe--
Confidence            34567888899888888888999999999998776555555666778888988222222222566666544321 111  


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK  306 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  306 (368)
                      ...............|.+.|++-+++..         .+.|++|+...+.         ...-+|..|+|..-++.-.++
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~---------gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG---------GPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC---------CCcceEECCCCcEEEEecccc
Confidence            1112334566788899999998888752         1335555543222         222356677777766655565


Q ss_pred             eEEEEec
Q 047325          307 TICVWRR  313 (368)
Q Consensus       307 ~i~iw~~  313 (368)
                      .|-.-|.
T Consensus       211 aiaridp  217 (353)
T COG4257         211 AIARIDP  217 (353)
T ss_pred             ceEEccc
Confidence            5555543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.38  E-value=0.013  Score=49.89  Aligned_cols=138  Identities=13%  Similarity=0.121  Sum_probs=88.1

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      ....|.+.+.-++.++.+..+..||- .++...... ..+....++|..++  .++.+-..+.+.+||+.....      
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt------  109 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT------  109 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH------
Confidence            34567777767888888889999994 455444443 34555677888877  566667789999999975421      


Q ss_pred             ceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCC
Q 047325          236 AQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSAD  305 (368)
Q Consensus       236 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d  305 (368)
                       +.+. +....-.-+.|++....++.+...|.+.+++....+... ....|..+++++... ..+.+.++.|
T Consensus       110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             -HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccceeeecCcH
Confidence             1111 111112227789988999999999999999987654442 222366666665553 2333334333

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.30  E-value=3.7  Score=33.30  Aligned_cols=238  Identities=9%  Similarity=0.096  Sum_probs=129.3

Q ss_pred             eeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcce-----ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325           37 IGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-----CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ...+..-.+.-.++..+|++...+..|.-.-+.|+..+.     -.+......-..++.+|++-..+..|+-+.+-|+.+
T Consensus       121 ~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSn  200 (370)
T COG5276         121 LIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSN  200 (370)
T ss_pred             eeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccC
Confidence            333333346678888999988877744445577875431     123344455578888999999999999999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      .........-                              .....+.++..+++..+++..  +.-+.+-|....+....
T Consensus       201 p~sPvli~~~------------------------------n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~  248 (370)
T COG5276         201 PHSPVLIGSY------------------------------NTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTV  248 (370)
T ss_pred             CCCCeEEEEE------------------------------ecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceE
Confidence            6532211100                              012256777777765555544  34577778766553333


Q ss_pred             eec-CCCceEEE---EeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          192 VSA-HDDAVNSV---VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       192 ~~~-~~~~v~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      +.. ....+.++   .. ++.+......+..+.+-|+.....   ......+......-..+...  ++++..+..+ ..
T Consensus       249 ~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp~s---pfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g  321 (370)
T COG5276         249 FGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNPPS---PFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TG  321 (370)
T ss_pred             eeccccCCcccccceec-ccceeeeeccccCceeEeccCCCC---CchhccccCCCccccceEEe--cCeeEeccCC-ce
Confidence            321 11222232   32 333566666667777778765532   11111222122223333332  3445444444 34


Q ss_pred             EEEeCCCcccccee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          268 NFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       268 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      .+-+....+..... .........+++.+.+.+.+...++-+.||+.
T Consensus       322 ~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         322 AVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             EEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            44454432221111 11112223445556668888888999999864

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.78  E-value=5.6  Score=33.96  Aligned_cols=67  Identities=12%  Similarity=0.101  Sum_probs=34.7

Q ss_pred             EEcCCCCEEEEEeC-C--CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          161 SLDQDCGLLYTASW-D--RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       161 ~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      +|.++|+.|+-++. |  ..+.+.|+.+++..+.-.+.........+++++ .++-...+..|+-.|+++.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL  112 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence            56778876655554 4  467888999988776555432323344555666 5444445568888888875

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.69  E-value=3.1  Score=40.87  Aligned_cols=82  Identities=20%  Similarity=0.311  Sum_probs=54.8

Q ss_pred             ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC--C--ccc------------ccceeec-cccccEEEEEEcCCC
Q 047325          193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK--G--TKH------------SLAQTLL-KQECAVTALVVSSSR  255 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--~~~------------~~~~~~~-~~~~~i~~~~~~~~~  255 (368)
                      ......|.|+....+|.++.++.||.|+-.-......  .  ...            +....+. .+..+|..+......
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            3345678999988889888888888544322221110  0  000            0011222 456799999999988


Q ss_pred             CEEEEecCCCcEEEEeCCC
Q 047325          256 SIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       256 ~~l~~~~~dg~i~i~d~~~  274 (368)
                      +.+.+-++.|+|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            9999999999999999875

>PRK10115 protease 2; Provisional

Probab=92.55  E-value=9.6  Score=36.06  Aligned_cols=112  Identities=11%  Similarity=0.069  Sum_probs=61.9

Q ss_pred             CEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCC-----CeEEEEE
Q 047325          156 AVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSAD-----GTVKVWK  223 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d-----g~i~i~d  223 (368)
                      .+..+.++|++++|+.+...     ..|++.|+.+++.+...-... . ..++|.+++  .+++...+     ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            46678899999988766432     268899998886432221111 1 458999887  44443322     3677777


Q ss_pred             cCCCCCCcccccceeeccccccEE-EEEEcCCCCEEEEecC---CCcEEEEeCC
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVT-ALVVSSSRSIVYCGSS---DGLVNFWERE  273 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~  273 (368)
                      +.+...  ....+  +........ ....+.++++++..+.   ++.+.+++..
T Consensus       206 lgt~~~--~d~lv--~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        206 IGTPAS--QDELV--YEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCChh--HCeEE--EeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            765421  11112  222222222 3334447776665443   3578888853

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.23  E-value=5.4  Score=34.57  Aligned_cols=63  Identities=11%  Similarity=0.141  Sum_probs=30.2

Q ss_pred             CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccccee-e---------------ccccccEEEEEEcCCCCEE
Q 047325          197 DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQT-L---------------LKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       197 ~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---------------~~~~~~i~~~~~~~~~~~l  258 (368)
                      .-|+.|..+.|.  +.+++-.+|.|+.||+......   +..-. .               ..-.+....+..|.||+.|
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P---kl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl  388 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP---KLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL  388 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS----EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC---cEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence            457888898888  4556666999999999876431   11111 0               0112345667777788777


Q ss_pred             EEec
Q 047325          259 YCGS  262 (368)
Q Consensus       259 ~~~~  262 (368)
                      ...+
T Consensus       389 YvTn  392 (461)
T PF05694_consen  389 YVTN  392 (461)
T ss_dssp             EEE-
T ss_pred             EEEe
Confidence            6654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.21  E-value=2.8  Score=36.73  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=71.4

Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC--------CEEEEecCCCcEEEEeCCC-ccccc
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR--------SIVYCGSSDGLVNFWEREK-QLSHG  279 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~-~~~~~  279 (368)
                      .+..|+....++-.|+..+      ..+..+..+...  -+.|.|..        +.|+ |-++..|.-.|.+- +..+.
T Consensus       482 i~~dg~~~~kLykmDIErG------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         482 IYLDGGERDKLYKMDIERG------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             EEecCCCcccceeeecccc------eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence            4445555566666677654      244455545443  45666632        2333 44445555556542 21111


Q ss_pred             eee----eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          280 GVL----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       280 ~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      ...    .+.........-...++++|+..|-|++||--..  .....+.+....|..+..+.+|.++...
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk~ilaT  621 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGKHILAT  621 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCcEEEEe
Confidence            111    1111111223335789999999999999985433  3334566778889999999999865433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.90  E-value=12  Score=35.53  Aligned_cols=82  Identities=16%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------Cccccccee--------eccccccEEEEEEcCC---CCEE
Q 047325          197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------GTKHSLAQT--------LLKQECAVTALVVSSS---RSIV  258 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~--------~~~~~~~i~~~~~~~~---~~~l  258 (368)
                      -.|..+..+++| .++..+..|...+.=.+..+.      +......+.        .......|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            467888999999 677767655443332221110      000001111        1134467899999995   5789


Q ss_pred             EEecCCCcEEEEeCCCcccc
Q 047325          259 YCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +.-..|+++++||+.....+
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             EEEecCCEEEEEecCCCCCC
Confidence            99999999999998754433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.72  E-value=8.4  Score=33.58  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=48.2

Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe----CC----------------C-EEEE
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA----AG----------------K-LVFS  301 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~----------------~-~l~~  301 (368)
                      ...+.+++.+|++++.++...=|+|.++|+.+.... +..++-...-+.|-.    ..                . +++-
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            345888999999999999888899999999876554 344444333322221    11                1 2333


Q ss_pred             eeCCCeEEEEecCCC
Q 047325          302 GSADKTICVWRRDGA  316 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~  316 (368)
                      +-.-|.|.||.+..+
T Consensus       386 aprRg~lEvW~~~~g  400 (415)
T PF14655_consen  386 APRRGILEVWSMRQG  400 (415)
T ss_pred             eccCCeEEEEecCCC
Confidence            455778888877665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.29  E-value=4.8  Score=31.11  Aligned_cols=131  Identities=16%  Similarity=0.267  Sum_probs=66.4

Q ss_pred             EEEEecC-CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCC------eEEEE-eecCCC
Q 047325           48 YSLAASK-DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDG------KIRVW-KISPKN  113 (368)
Q Consensus        48 ~~~~~~~-~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg------~i~vw-~~~~~~  113 (368)
                      .++...| +.|+.+.....|.+|++.++    +..|..- +.|..+.++  |+||+|--.+.      .+|+| +.+...
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            3455556 65544456678999998733    3344443 778899988  99999875432      45665 222210


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      .      ...+...........+...-.....-..+-..-...+.+++-.|-..-|++|+. +.+.+|.+...
T Consensus       100 ~------~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  100 E------ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             c------cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            0      000000000000000000000000001111224567889999885555666664 68999987543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.03  E-value=9.7  Score=32.98  Aligned_cols=39  Identities=8%  Similarity=0.014  Sum_probs=18.9

Q ss_pred             EEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCC
Q 047325          267 VNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       267 i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                      +.+||.++.+-.. ..+........++..++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            4578877543211 11111111223455677777777754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.87  E-value=1.5  Score=23.43  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=23.9

Q ss_pred             CCCCEEEEEe-CCCcEEEEEccCCeEEEEeec
Q 047325          164 QDCGLLYTAS-WDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       164 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4667666655 578999999999988887765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.50  E-value=11  Score=32.79  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=67.7

Q ss_pred             eEEEEeCCCCeEEEEcCCCeEE-EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          199 VNSVVSSSEGLIFTGSADGTVK-VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       199 v~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      ...+...+++.++..+..|.+. -||--..    ..  ..........+..+.+.+++..++++ ..|.+..- ...++.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~----~W--~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~  312 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP----YW--QPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLT  312 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCc----ce--EEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCc
Confidence            3445566777444444455433 3332110    00  11122334568899999998887766 45655442 222221


Q ss_pred             ----cceeee-c-cceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          278 ----HGGVLK-G-HKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       278 ----~~~~~~-~-~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                          ...... . ....++.+.+ +.+.++.++.+|.+....-.....+....-..-....+.+.|.++++-
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g  384 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKG  384 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence                001111 1 1123455544 344556666788877764333333333222233456889999887763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.47  E-value=8.2  Score=31.22  Aligned_cols=111  Identities=18%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEE-ccCCeEE-EEeecC--CCceEEEEeCCCC-eEEEE---cCCCeEEEEEcCCC
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWR-ISDSKCL-ESVSAH--DDAVNSVVSSSEG-LIFTG---SADGTVKVWKREQH  227 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~-~~~~~~--~~~v~~~~~~~~~-~l~~~---~~dg~i~i~d~~~~  227 (368)
                      .+..-.|++++...+....+...+++. ..+++.. ..+...  ...|..+.++||| .++..   ..++.|.+--+...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            556678888877666666566666663 3333222 122211  1289999999999 43333   34678888766543


Q ss_pred             CCC---cccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          228 GKG---TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       228 ~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      ..+   ...............+..+.|.+++.+++.+...+.
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            332   111112222233567899999999988777665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.01  E-value=13  Score=32.63  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-----CC
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-----DC  166 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~  166 (368)
                      .+.+++|+..|.++||+..........                            ...-..-..+|..+..-+     +.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------------------lllE~~l~~PILqv~~G~F~s~~~~   88 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------------------LLLETQLKDPILQVECGKFVSGSED   88 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCcc----------------------------EEEEEecCCcEEEEEeccccCCCCc
Confidence            358999999999999998544321100                            001111345666665432     22


Q ss_pred             CEEEEEeCCCcEEEEEccC--Ce-------EEEEeecCC--CceEEEEeCC----C--CeEEEEcCCCeEEEEEcCCCCC
Q 047325          167 GLLYTASWDRTFKVWRISD--SK-------CLESVSAHD--DAVNSVVSSS----E--GLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~--~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      ..|++ -.-..+.+|.+..  |.       .+..+..|.  .....++..|    .  ..+.+-+.||.+.+|+-+..  
T Consensus        89 ~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--  165 (418)
T PF14727_consen   89 LQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--  165 (418)
T ss_pred             ceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--
Confidence            23443 3456677777632  11       122222232  2223333322    2  27888999999999998643  


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                           .........--.-.++|.+..+.|++++.+..+.-|...
T Consensus       166 -----~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  166 -----AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             -----EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence                 111111112223456788888899999998899988753

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.92  E-value=3.2  Score=36.94  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=72.7

Q ss_pred             CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          195 HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       195 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ...+|..+.+..+|.+.+|+.||- ..||....+      ...... ....+|..+..+-++ .|..|+.+| +++.+.+
T Consensus       163 ~d~~V~aLv~D~~g~lWvgT~dGL-~~fd~~~gk------alql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~  233 (671)
T COG3292         163 KDTPVVALVFDANGRLWVGTPDGL-SYFDAGRGK------ALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAE  233 (671)
T ss_pred             cCccceeeeeeccCcEEEecCCcc-eEEccccce------EEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchh
Confidence            356788888888888899998874 455544321      122111 222455555555444 567777777 7887776


Q ss_pred             CccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ..........-....+..+..| ...+..|++.|..+.---+.+-..+.....---+.|+++....+|.
T Consensus       234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs  302 (671)
T COG3292         234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS  302 (671)
T ss_pred             hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC
Confidence            5332222222233445555444 3467778877755332111111111111111123567777777776

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.87  E-value=2.7  Score=38.47  Aligned_cols=37  Identities=24%  Similarity=0.683  Sum_probs=28.3

Q ss_pred             CEeEEEEcC----CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          156 AVSCMSLDQ----DCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       156 ~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      .+..++++.    +..++++.+.|+.+++||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            445555555    6779999999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.85  E-value=9.2  Score=30.84  Aligned_cols=158  Identities=8%  Similarity=-0.064  Sum_probs=81.7

Q ss_pred             CeeEEEE-e-CCEEEEEeCCC--eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325           84 LVKAIVI-S-GEKIFTGHQDG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus        84 ~v~~~~~-~-~~~l~s~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                      -...+.| . +..+-+.+.-|  .|+.+|+.+++..........                               ----.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------------------------~FgEG   94 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------------------------YFGEG   94 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------------------------EEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------------------------cccee
Confidence            3456777 4 44555666666  688999988875433332211                               01112


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325          160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL  239 (368)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  239 (368)
                      +....+ +...-.=.++...+||..+.+.+.++.-. +.=..++.. +..|+.......|+++|..+...... ..+..-
T Consensus        95 it~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~-i~V~~~  170 (264)
T PF05096_consen   95 ITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRT-IQVTDN  170 (264)
T ss_dssp             EEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEE-EE-EET
T ss_pred             EEEECC-EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEcC-CCEEEEECCccceEEECCcccceEEE-EEEEEC
Confidence            333322 23333345789999999999999888743 444667632 22666666677899999875432111 011111


Q ss_pred             ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      ...-..++.+.+. +|...|=.=....|...|..++..
T Consensus       171 g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V  207 (264)
T PF05096_consen  171 GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV  207 (264)
T ss_dssp             TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred             CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence            1112345556665 455444444555666666666543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.73  E-value=3.3  Score=31.17  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             ceEEEEeCCCC-------eEEEEcCCCeEEEEEcCC
Q 047325          198 AVNSVVSSSEG-------LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       198 ~v~~~~~~~~~-------~l~~~~~dg~i~i~d~~~  226 (368)
                      .+..++|+|.|       .|++-+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            67889999954       788899999999998753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.49  E-value=12  Score=31.60  Aligned_cols=63  Identities=10%  Similarity=0.099  Sum_probs=30.4

Q ss_pred             CCCEEEEEeC-----CCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCCeEEEEcCCC----eEEEEEcCCC
Q 047325          165 DCGLLYTASW-----DRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEGLIFTGSADG----TVKVWKREQH  227 (368)
Q Consensus       165 ~~~~l~~~~~-----d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg----~i~i~d~~~~  227 (368)
                      ++++.+.|+.     ...+..||+.+.+=  +..+......-.+++...+.+.+.|+.++    .+..||+++.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            3455566653     23588888876542  22222111111122222333666666553    3567887754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.37  E-value=5.9  Score=28.00  Aligned_cols=108  Identities=10%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCCe--------EEEEeecCCCceEEEEeCC---CC---eEEEEcCCCeEEEEEcC
Q 047325          160 MSLDQDCGLLYTASWDRTFKVWRISDSK--------CLESVSAHDDAVNSVVSSS---EG---LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~---~~---~l~~~~~dg~i~i~d~~  225 (368)
                      -.|......|++++.-|.|.|++.....        .+..+. -...|++++-.+   +.   .|+.|+ ...+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            4566666678888888999999876432        334443 456677775433   22   666665 4579999998


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcC----CCCEEEEecCCCcEEEEeCCCccc
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSS----SRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      .+..       ...+.-...+.++.+-.    ...++++| .+..|.-||.+..+.
T Consensus        82 ~N~d-------~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSD-------LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI  129 (136)
T ss_pred             cCch-------hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence            7632       22233445677776632    23344444 445677777665443

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=89.17  E-value=25  Score=34.87  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=97.4

Q ss_pred             CCCcEEEEEccCCeEEEEeecCC-CceEEEEe-----CC--C---CeEEEEcC---------CCeEEEEEcCC----CCC
Q 047325          174 WDRTFKVWRISDSKCLESVSAHD-DAVNSVVS-----SS--E---GLIFTGSA---------DGTVKVWKREQ----HGK  229 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~-----~~--~---~~l~~~~~---------dg~i~i~d~~~----~~~  229 (368)
                      ....|.+....+.+.+..+.-.+ ..+.+++.     ..  .   .+|++|..         .|.++++|+-.    +++
T Consensus      1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred             ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence            34566777766666555443221 22333332     11  1   27777743         58899999743    221


Q ss_pred             -Ccccccce-eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC-CCccccceeeeccceEEEEEEeCCCEEEEeeCCC
Q 047325          230 -GTKHSLAQ-TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER-EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK  306 (368)
Q Consensus       230 -~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  306 (368)
                       ..+.+... .....+++|..++=- +|.++ ++ ....|.+|++ +........+..-...+.++..-+++|+.|.-=.
T Consensus      1082 P~t~~KlKel~~eE~KGtVsavceV-~G~l~-~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV-RGHLL-SS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred             CcccceeeeeehhhcccceEEEEEe-ccEEE-Ec-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhh
Confidence             11111111 123345667666532 45444 33 3467999999 4444443344444555566666688899888878


Q ss_pred             eEEEEecCCCceeeeEeeeccc--cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHT--GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|.+..+.... ..+..+....  -.+.++.|--||.-+          .++.+..|++|+++
T Consensus      1159 sisfl~fqeep-~rlsL~srd~~~l~v~s~EFLVdg~~L----------~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEP-YRLSLLSRDFEPLNVYSTEFLVDGSNL----------SFLVSDADRNIHVY 1210 (1366)
T ss_pred             ceEEEEEccCc-eEEEEeecCCchhhceeeeeEEcCCee----------EEEEEcCCCcEEEE
Confidence            88887766542 2232232222  247788887777643          34455666666553

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=88.95  E-value=1.4  Score=21.18  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=15.1

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEE
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVW   69 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw   69 (368)
                      .|.+++..+.+++.+.+-+.+|+|
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRif   26 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIF   26 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEec
Confidence            456666666666666666666665

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.94  E-value=11  Score=30.59  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             eEEEEeCCCC--eEEEEcCCC-eEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCC-----CcEE
Q 047325          199 VNSVVSSSEG--LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSD-----GLVN  268 (368)
Q Consensus       199 v~~~~~~~~~--~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~  268 (368)
                      ...++++|.-  -++.+-.-| ...++|......      ......  .....-.=.|+|||.+|...-.|     |.|-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~------pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE------PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcC------cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEE
Confidence            3456677765  444444444 356788775533      111111  11111123589999999876433     6899


Q ss_pred             EEeCCCccccceeeeccceEE--EEEEeCCCEEEEee
Q 047325          269 FWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGS  303 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~  303 (368)
                      +||.+.+......+..|...-  +.+.+||+.|+.+.
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            999997666656666654433  66778999988764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.55  E-value=6.9  Score=27.69  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             EeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccccEEEEEEcC-----CCCEEEEecCCCcEEEEeCCCc
Q 047325          203 VSSSEG-LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQECAVTALVVSS-----SRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       203 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      .|.... .|++++.-|+|.|++......... ......+..-...|++++-.+     +...|+.|+. ..+..||....
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence            344444 788888899999998765432110 111122233445577776443     3457777765 56999999876


Q ss_pred             cccceeeeccceEEEEEEe------CCCEEEEeeCCCeEEEEecCCC
Q 047325          276 LSHGGVLKGHKLAVLCLAA------AGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      .......  -+..+.++..      +..++++| .+..|.-||.+..
T Consensus        84 ~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   84 SDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             chhhhhh--CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            5542222  2222322222      24445544 4667777766554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.24  E-value=18  Score=32.09  Aligned_cols=110  Identities=11%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             CCceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCC------CEEEEec-----
Q 047325          196 DDAVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSR------SIVYCGS-----  262 (368)
Q Consensus       196 ~~~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~------~~l~~~~-----  262 (368)
                      -...+.|+|.|++.++++-. .|.|++++................ ...+.....++++|+-      .+|....     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34568899999995555555 699999976543210000011111 1236778999999874      2344332     


Q ss_pred             -----CCCcEEEEeCCCc-------ccccee---eeccceEEEEEEeCCCEEEEeeCC
Q 047325          263 -----SDGLVNFWEREKQ-------LSHGGV---LKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       263 -----~dg~i~i~d~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                           ....|.-|.+...       +.+...   ...|....+.|.||+.++++.++.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1233444554311       111111   124777778899999876655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.47  E-value=25  Score=32.88  Aligned_cols=160  Identities=14%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             CceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcceecc-----cCCCCCeeEEEEeCCEEEEEeCCCeEE-E
Q 047325           34 NGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGF-----KASSGLVKAIVISGEKIFTGHQDGKIR-V  106 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~~~dg~i~-v  106 (368)
                      ++++.++.-..+.+-.+.|+.+ -|++-..||++.+++........     ......|..+.+..+-++.-..+|.+. +
T Consensus        73 G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i  152 (829)
T KOG2280|consen   73 GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILI  152 (829)
T ss_pred             ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEE
Confidence            3444444444457888999866 88889999999999986543332     223334444444433333333344443 3


Q ss_pred             EeecCCCccccccCC--ccc-cceeeeeccCCCCceeEec-----------c--cceeeeeecCCCEeEEEEcCCCCEEE
Q 047325          107 WKISPKNQSVHKRAG--TLP-TLKDIFKSSIKPSNYIEVR-----------R--HRTALWIRHSDAVSCMSLDQDCGLLY  170 (368)
Q Consensus       107 w~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~v~~~~~~~~~~~l~  170 (368)
                      -+.+..........+  ..+ ..-........+.....+.           .  .....+..-...+..+.++|+.++|+
T Consensus       153 ~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~la  232 (829)
T KOG2280|consen  153 NGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLA  232 (829)
T ss_pred             cCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEE
Confidence            333322111111100  000 0000011111111111110           0  00011111235677888999999999


Q ss_pred             EEeCCCcEEEEEccCCeEEEEee
Q 047325          171 TASWDRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~  193 (368)
                      --...|.|.+-+....+....+.
T Consensus       233 Lyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  233 LYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEecCCcEEEEecchhhhhhccC
Confidence            88899999988877666665554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.47  E-value=28  Score=33.43  Aligned_cols=116  Identities=8%  Similarity=-0.022  Sum_probs=65.5

Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc--------eEEEEeC-----------------CCCeEEEEcCCCeEE
Q 047325          166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDA--------VNSVVSS-----------------SEGLIFTGSADGTVK  220 (368)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~-----------------~~~~l~~~~~dg~i~  220 (368)
                      +..++.++.++.|.-.|..+|+.+-++......        .+.+.+.                 .++.++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457778888899999999999988776532211        1112221                 122788888999999


Q ss_pred             EEEcCCCCCCccccc-----ce-eeccccccEEEEEEcC--CCCEEEEecC----------CCcEEEEeCCCcccccee
Q 047325          221 VWKREQHGKGTKHSL-----AQ-TLLKQECAVTALVVSS--SRSIVYCGSS----------DGLVNFWEREKQLSHGGV  281 (368)
Q Consensus       221 i~d~~~~~~~~~~~~-----~~-~~~~~~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  281 (368)
                      -.|.++++.......     .. .+......-..+.-.|  .+..+++|+.          +|.|+-+|.++++.....
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999887743211100     00 0000000000111112  1345556542          688999999988776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.05  E-value=35  Score=34.18  Aligned_cols=144  Identities=15%  Similarity=0.274  Sum_probs=84.6

Q ss_pred             ccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----C------CEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           60 GSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----G------EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        60 ~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~------~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      .+.|..+.+|+.++  ....+.+-...|..+..-    |      ++++.-+.--.|.++-+.-.+.......-     .
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-----~  169 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-----N  169 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----c
Confidence            34688999999874  455566666667766653    1      24444444556777765543321111100     0


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc----cCC---e-E-----------
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI----SDS---K-C-----------  188 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~---~-~-----------  188 (368)
                      ..                  ....-..-.|+|+....+|+.|++| .||  .+|.+    ..+   + +           
T Consensus       170 ~~------------------~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls  228 (1311)
T KOG1900|consen  170 TS------------------FKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLS  228 (1311)
T ss_pred             cc------------------eeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHH
Confidence            00                  0001134568889877788766665 566  44443    111   1 0           


Q ss_pred             -----EEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325          189 -----LESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       189 -----~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  229 (368)
                           +..+. .+..+|..+...... .+.+-+..|.|..||+...+.
T Consensus       229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~  276 (1311)
T KOG1900|consen  229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL  276 (1311)
T ss_pred             HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence                 11122 456789999987776 888899999999999987543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.31  E-value=35  Score=33.38  Aligned_cols=70  Identities=23%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             cCCCEeEEEEcCCC------CEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeC---CC------C-eEEEEc
Q 047325          153 HSDAVSCMSLDQDC------GLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSS---SE------G-LIFTGS  214 (368)
Q Consensus       153 ~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~------~-~l~~~~  214 (368)
                      -...|.|+++.++.      ++++.++.|+.++++.+.-...+..+.  +-..++.++.+-   .+      . +|.+|-
T Consensus       581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL  660 (1205)
T KOG1898|consen  581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL  660 (1205)
T ss_pred             eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence            34567888887754      579999999999999987665555553  223333333321   11      2 667777


Q ss_pred             CCCeEEEE
Q 047325          215 ADGTVKVW  222 (368)
Q Consensus       215 ~dg~i~i~  222 (368)
                      .+|.+.-+
T Consensus       661 ~NGvllR~  668 (1205)
T KOG1898|consen  661 RNGVLLRF  668 (1205)
T ss_pred             cccEEEEE
Confidence            77776555

>smart00564 PQQ beta-propeller repeat

Probab=85.98  E-value=2.4  Score=21.19  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.3

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEE
Q 047325          168 LLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      .++.++.+|.+..+|..+|+.+-.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677888899999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=7.8  Score=34.32  Aligned_cols=73  Identities=7%  Similarity=0.006  Sum_probs=49.6

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEc---------cCCeEEEEee-----------cCCCceEEEEeCCCC----eE
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRI---------SDSKCLESVS-----------AHDDAVNSVVSSSEG----LI  210 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~----~l  210 (368)
                      -.|..+..++.|..++-.+.+|.+..+=.         +.|+.+...+           ...-.+...+|+|+.    .|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            35777888999999999998885544321         2343322211           112235567899976    78


Q ss_pred             EEEcCCCeEEEEEcCCC
Q 047325          211 FTGSADGTVKVWKREQH  227 (368)
Q Consensus       211 ~~~~~dg~i~i~d~~~~  227 (368)
                      ..-+.|..|++||+...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            88889999999999765

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.50  E-value=19  Score=29.61  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=60.1

Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec------CCCcEEEEeCCCccccceeeec-----
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS------SDGLVNFWEREKQLSHGGVLKG-----  284 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-----  284 (368)
                      -..|.+||.....      -...-.+-.+.|+.+.|..+.++++.|.      ....+..||..+..-.  .+..     
T Consensus        15 C~~lC~yd~~~~q------W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~   86 (281)
T PF12768_consen   15 CPGLCLYDTDNSQ------WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNS   86 (281)
T ss_pred             CCEEEEEECCCCE------eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCccccc
Confidence            4569999986541      2222233567899999987666776664      3556888998865331  1211     


Q ss_pred             cceEEEEEEe---CCC-EEEEee-CCCeEEEEecCCCceeeeEe-eeccccCeeEEEEe
Q 047325          285 HKLAVLCLAA---AGK-LVFSGS-ADKTICVWRRDGAIHTCLSV-LTGHTGPVKCLAVE  337 (368)
Q Consensus       285 ~~~~~~~~~~---~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~h~~~v~~l~~~  337 (368)
                      -+.++..+.+   |+. +.++|. .+|.-.+...+..+...+.. .......|.++.+-
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            1345555554   444 444443 34443443334443333333 12223345555443

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=85.27  E-value=8.9  Score=32.93  Aligned_cols=134  Identities=17%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      ++.+..-+..+.|-+|+..+++...........                            ....-.-+.|.+...+++.
T Consensus       235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~d----------------------------sag~~~kL~w~ng~~~li~  286 (465)
T KOG2714|consen  235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISSYD----------------------------SAGSFLKLGWLNGSNLLID  286 (465)
T ss_pred             hhhhhhccccccccccchhhhceeeeeeccCcc----------------------------ccCChhhhccccCceeEEE
Confidence            556666777888999998877322111111000                            1122233445543333333


Q ss_pred             E-------eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          172 A-------SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       172 ~-------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      .       ..++.|.+||.++..            +...|.   .++.++..+.+++-+.-.............+..|..
T Consensus       287 ~~~fp~~~kdN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~  351 (465)
T KOG2714|consen  287 SQKFPLRMKDNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGS  351 (465)
T ss_pred             EeeccccccCCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCC
Confidence            2       235678888887654            112221   455566677777777643332222333344444443


Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      +.        + ++=.+...+.+++|......-
T Consensus       352 ~L--------~-~idv~~~~~~~~~~~~tr~rG  375 (465)
T KOG2714|consen  352 PL--------G-LIDVCSDGGHVRVWNSTRFRG  375 (465)
T ss_pred             Cc--------c-eeehhhhCCcceEEeeccccc
Confidence            31        1 333344556788888765433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.17  E-value=22  Score=30.01  Aligned_cols=136  Identities=11%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeE---EEEeecCCCce--EEEEeCCCCeEEEEcC-----CCeEEEEEcCCCCC
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKC---LESVSAHDDAV--NSVVSSSEGLIFTGSA-----DGTVKVWKREQHGK  229 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~  229 (368)
                      ++.+++.|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++...+...+.|+.     ...+..||+.+..=
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            44566666654     3566777766542   12221111111  1223333335555553     24678888875421


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCCC----cEEEEeCCCccccce-ee-e-ccceE---EEEEE-eCCCE
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGG-VL-K-GHKLA---VLCLA-AAGKL  298 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~-~~-~-~~~~~---~~~~~-~~~~~  298 (368)
                          ..+..+.... .....+...++++.+.|+.++    .+..||.++..-... .. . ..+..   ...+. .++.+
T Consensus       152 ----~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~i  226 (323)
T TIGR03548       152 ----FELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLL  226 (323)
T ss_pred             ----eECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEE
Confidence                1111111111 111122223567777777654    356788775432111 00 0 01111   12222 35778


Q ss_pred             EEEeeCC
Q 047325          299 VFSGSAD  305 (368)
Q Consensus       299 l~~~~~d  305 (368)
                      ++.|+.+
T Consensus       227 yv~GG~~  233 (323)
T TIGR03548       227 LCIGGFN  233 (323)
T ss_pred             EEECCcC
Confidence            8888876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=84.78  E-value=24  Score=30.12  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             EEEeCCCEEEEeeCC----------------------CeEEEEecCCCceeeeEe
Q 047325          291 CLAAAGKLVFSGSAD----------------------KTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       291 ~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~  323 (368)
                      +...++++.+.|+.+                      ..+.+||.++.+...+..
T Consensus       253 a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~  307 (346)
T TIGR03547       253 AGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK  307 (346)
T ss_pred             eeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence            344678888888754                      146788877665544443

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.93  E-value=18  Score=27.99  Aligned_cols=102  Identities=10%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             CCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceE--EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325          165 DCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL  240 (368)
Q Consensus       165 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  240 (368)
                      ++.++.+.+.  ...|+.||+.+++.+..-+-....+.  .+.-..+....-.-.+|.-..+|.++.+.      ...+ 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~------lg~~-  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE------LGRF-  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh------hccc-
Confidence            4456666554  34799999999988765543311221  11222222333345678888888875422      1111 


Q ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      ..++.=..++.  ++.-|+.+.....++.-|.++.
T Consensus       128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             ccCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence            12222334433  5555777766667777665543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.83  E-value=6.2  Score=36.19  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=25.5

Q ss_pred             ccEEEEEEcC----CCCEEEEecCCCcEEEEeCCCccc
Q 047325          244 CAVTALVVSS----SRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       244 ~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      .....++.+.    +..+|++-+.|+.+++||+.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            3455566666    678999999999999999998776

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.30  E-value=2  Score=22.63  Aligned_cols=19  Identities=16%  Similarity=-0.031  Sum_probs=12.5

Q ss_pred             ccccCeeEEEEecCCeeee
Q 047325          326 GHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~  344 (368)
                      .....-....|+|||+.++
T Consensus         6 ~~~~~~~~p~~SpDGk~i~   24 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIY   24 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEE
T ss_pred             cCCccccCEEEecCCCEEE
Confidence            3445677889999999643

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.30  E-value=4  Score=21.41  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=22.9

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325          168 LLYTASWDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      .++.++.+|.|...|.++|+.+-.++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            466678999999999999999887764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=83.04  E-value=28  Score=29.59  Aligned_cols=144  Identities=12%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325          196 DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ  275 (368)
Q Consensus       196 ~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  275 (368)
                      ...+.++.+.+++.++..+..|.+..- .+..+.  ..  ..........++++.+.++++.++.+ ..|.+++=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--tW--~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--AW--TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--eE--EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence            456888999998855566666765432 111111  11  11222345678999999998877765 4576653223322


Q ss_pred             cccceeeec---cceEEE--EEEeCCCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          276 LSHGGVLKG---HKLAVL--CLAAAGKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       276 ~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ..-.....+   ....+.  .+.+++..+ .++.+|.+.. ..+.+ ..+.+.....-....+.+.|..++..++.+.
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            211110100   112233  344555554 4556776654 33332 2222211122234578888887777544444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.70  E-value=29  Score=29.48  Aligned_cols=51  Identities=22%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             CCCEEEEeeCCCeEEEEecCCCce-eeeEe-eeccccCeeEEEEecCCeeeec
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIH-TCLSV-LTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .+.++++.-..+.|....++.... ..... +......+.+|++.|||.+.++
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~  322 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS  322 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence            356777766677888887764421 11222 2334458999999999995333

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.33  E-value=30  Score=29.48  Aligned_cols=12  Identities=8%  Similarity=0.169  Sum_probs=8.5

Q ss_pred             CcEEEEEccCCe
Q 047325          176 RTFKVWRISDSK  187 (368)
Q Consensus       176 ~~i~iwd~~~~~  187 (368)
                      ..+..||..+.+
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            468888887654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.81  E-value=14  Score=32.13  Aligned_cols=105  Identities=10%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             CCCCEEEEEeCCCcEEEE-EccCC-e----EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          164 QDCGLLYTASWDRTFKVW-RISDS-K----CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       164 ~~~~~l~~~~~d~~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      ..+.-+++++.||.|.-| |.+.+ .    .++.++-...++..+.-..+. -+++-+.+|++..+......       .
T Consensus       278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~-------~  350 (733)
T COG4590         278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK-------L  350 (733)
T ss_pred             hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc-------c
Confidence            345668888889988877 54432 1    222333223344433322222 56777888888887654331       1


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL  276 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  276 (368)
                      ......-..+.-++++|+++++++-. .|.++++.+++..
T Consensus       351 lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         351 LLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             eehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence            11222223566788999999998764 4679999887653

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.46  E-value=41  Score=30.47  Aligned_cols=146  Identities=12%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc--CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK--ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~--~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .+|.++.++-+ .+..|..||-- .+|..+. ...+.  ....+|.++..+ ...|..|+.+| +.+.+.+..+......
T Consensus       165 ~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~  242 (671)
T COG3292         165 TPVVALVFDANGRLWVGTPDGLS-YFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGP  242 (671)
T ss_pred             ccceeeeeeccCcEEEecCCcce-EEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCC
Confidence            34666666633 67778888854 4454432 22211  122456666655 67788888766 4455554421100000


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC--CC
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH--DD  197 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~  197 (368)
                      .-                               ....|..+.-..+| .+-.|+..|-.+.--.+.+-.+...+.|  -.
T Consensus       243 ~l-------------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S  290 (671)
T COG3292         243 ML-------------------------------PSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVS  290 (671)
T ss_pred             CC-------------------------------cchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccc
Confidence            00                               22344444444444 4666666664433222222222222222  24


Q ss_pred             ceEEEEeCCCCeEEEEcCCCeEEEEEc
Q 047325          198 AVNSVVSSSEGLIFTGSADGTVKVWKR  224 (368)
Q Consensus       198 ~v~~~~~~~~~~l~~~~~dg~i~i~d~  224 (368)
                      .|.++....+|.+-+++.+|.+++-+-
T Consensus       291 ~vnsL~~D~dGsLWv~t~~giv~~~~a  317 (671)
T COG3292         291 TVNSLWLDTDGSLWVGTYGGIVRYLTA  317 (671)
T ss_pred             cccceeeccCCCEeeeccCceEEEecc
Confidence            566777777788999998888776554

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=81.24  E-value=33  Score=29.26  Aligned_cols=44  Identities=14%  Similarity=0.069  Sum_probs=27.3

Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      .+..+|++.-||..+..   ...+...-.-.+.++.|||+.++..+-
T Consensus       194 ~g~~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             cCCCccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEe
Confidence            44467888888765542   222322333467789999999876553

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=80.46  E-value=19  Score=34.00  Aligned_cols=141  Identities=16%  Similarity=0.158  Sum_probs=84.3

Q ss_pred             EEEEccCCCcEEEEcCC-c---c--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325           56 LLYTGSDSKNIRVWKNL-K---E--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~-~---~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      .+..|+.++.+.++... .   +  ...+......+.++.+...-+..|.-||++-.+--..... ....    +     
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS-wd~e----p-----  618 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS-WDGE----P-----  618 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCC-CCCC----C-----
Confidence            56778888888888644 1   1  1122334556777777766677777777776653221111 0000    0     


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---CCCceEEEEeCC
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---HDDAVNSVVSSS  206 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~  206 (368)
                                       ......-..+|...++..|   ++.++.+|.|.++...+......+..   |...|+++....
T Consensus       619 -----------------~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~  678 (925)
T KOG3522|consen  619 -----------------NISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD  678 (925)
T ss_pred             -----------------ccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC
Confidence                             0000013456777777655   56677789999999987766655544   456799999988


Q ss_pred             CCeEEEEcCCCeEEEEEcCC
Q 047325          207 EGLIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       207 ~~~l~~~~~dg~i~i~d~~~  226 (368)
                      .+..++-.....++.++..+
T Consensus       679 ~gVwvafasG~~~rlfhtet  698 (925)
T KOG3522|consen  679 NGVWVAFASGDEERLFHTET  698 (925)
T ss_pred             CceEEEEcCCCEEEEecccc
Confidence            88444444444666665543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.39  E-value=66  Score=32.15  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=40.0

Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      +..++.+..+....+.+ .+...+.+.+|+.............+...    ..++..++++..||.+.+||.+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             cccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCC
Confidence            34444444444333333 33344666666655433332222221111    778899999999999999998775

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.39  E-value=6.8  Score=20.76  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=23.7

Q ss_pred             eCCCEEEEee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325          294 AAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV  336 (368)
Q Consensus       294 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~  336 (368)
                      |+++.|+++. .+++|.++|..+.  ..+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEEC-CCCCceEEe
Confidence            4566666554 5889999988665  55555543 233334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-13
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-11
2h9l_A	329	Wdr5delta23 Length = 329		8e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		8e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 57/317 (17%)
Query: 33  QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKN----LKEFCGFKASSGLV 85
           +NG L+ +L      ++ +A S D   + + SD K +++W      L+   G  +S   V
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 86  KAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRH 145
            A    G+ I +   D  +++W         ++    L TL                   
Sbjct: 187 -AFSPDGQTIASASDDKTVKLW---------NRNGQLLQTL------------------- 217
Query: 146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS 205
                  HS +V  ++   D   + +AS D+T K+W   + + L++++ H  +VN V   
Sbjct: 218 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264
            +G  I + S D TVK+W R          L QTL     +V  +  S     +   S D
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS 322
             V  W R  Q  H   L GH  +V  +  +  G+ + S S DKT+ +W R+G +   L 
Sbjct: 325 KTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQ 379
Query: 323 VLTGHTGPVKCLAVEED 339
            LTGH+  V+ +A   D
Sbjct: 380 TLTGHSSSVRGVAFSPD 396

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
           HS +V  ++   D   + +AS D+T K+W   + + L++++ H  +V  V  S +G  I 
Sbjct: 56  HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA 114
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           + S D TVK+W R          L QTL     +V  +  S     +   S D  V  W 
Sbjct: 115 SASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
           R  QL     L GH  +V  +  +  G+ + S S DKT+ +W R+G +   L  LTGH+ 
Sbjct: 168 RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSS 222
Query: 330 PVKCLAVEED 339
            V+ +A   D
Sbjct: 223 SVRGVAFSPD 232

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 44/265 (16%)
Query: 76  CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135
           C  + S G V  +    +KI +G +D  I++W                            
Sbjct: 128 CRSETSKG-VYCLQYDDQKIVSGLRDNTIKIWD--------------------------- 159
Query: 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195
             N +E +R  T     H+ +V C+  D+   ++ T S D T +VW ++  + L ++  H
Sbjct: 160 -KNTLECKRILTG----HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHH 212
Query: 196 DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255
            +AV  +   + G++ T S D ++ VW        T  +L + L+    AV   VV    
Sbjct: 213 CEAVLHL-RFNNGMMVTCSKDRSIAVW---DMASPTDITLRRVLVGHRAAVN--VVDFDD 266
Query: 256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315
             +   S D  +  W           L GHK  + CL    +LV SGS+D TI +W  D 
Sbjct: 267 KYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DI 323
Query: 316 AIHTCLSVLTGHTGPVKCLAVEEDR 340
               CL VL GH   V+C+  +  R
Sbjct: 324 ECGACLRVLEGHEELVRCIRFDNKR 348

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS 204
            RT L    +  ++C+  + +   + T + D+  +V+   + K L  +S HD  V ++  
Sbjct: 113 QRTTLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 205 SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GS 262
           +  G++ +GS D TV+VW  +      K             V  L +   ++I Y   GS
Sbjct: 171 AHGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 263 SDGLVNFWEREKQLS---HG-------------------GVLKGHKLAVLCLAAAGKLVF 300
            D  ++ W+  K+ S   HG                   GVL+GH  +V  ++  G +V 
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVV 284
Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
           SGS D T+ VW  D A   CL +L+GHT  +     + +R
Sbjct: 285 SGSYDNTLIVW--DVAQXKCLYILSGHTDRIYSTIYDHER 322

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS 204
            RT L    +  ++C+  + +   + T + D+  +V+   + K L  +S HD  V ++  
Sbjct: 113 QRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 205 SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GS 262
           +  G++ +GS D TV+VW  +      K             V  L +   ++I Y   GS
Sbjct: 171 AHGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 263 SDGLVNFWEREKQLS---HG-------------------GVLKGHKLAVLCLAAAGKLVF 300
            D  ++ W+  K+ S   HG                   GVL+GH  +V  ++  G +V 
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284
Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
           SGS D T+ VW  D A   CL +L+GHT  +     + +R
Sbjct: 285 SGSYDNTLIVW--DVAQMKCLYILSGHTDRIYSTIYDHER 322

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 83/188 (44%), Gaps = 19/188 (10%)
Query: 153 HSD-AVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLI 210
           H D  ++C+   Q CG  + + S D T KVW     KCL ++  H   V S     + +I
Sbjct: 117 HDDHVITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMRDNII 172
Query: 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
            +GS D T+KVW  E            TL      V  + +   R  V  GS D  +  W
Sbjct: 173 ISGSTDRTLKVWNAE------TGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVW 224
Query: 271 EREK-QLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
           + E  Q  H  VL GH  AV C+   G+ V SG+ D  + VW  D    TCL  L GHT 
Sbjct: 225 DIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW--DPETETCLHTLQGHTN 280
Query: 330 PVKCLAVE 337
            V  L  +
Sbjct: 281 RVYSLQFD 288

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 146 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 200 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 253
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 254 GHKNEKYCI 262

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 88  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 148 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 202 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 255
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 256 GHKNEKYCI 264

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 238 GHKNEKYCI 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 81  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 141 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 195 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 248
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 249 GHKNEKYCI 257

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 238 GHKNEKYCI 246

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 124 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 178 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 231
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 232 GHKNEKYCI 240

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 60  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 120 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 174 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 227
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 228 GHKNEKYCI 236

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 235 GHKNEKYCI 243

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 124 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 178 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 231
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 232 GHKNEKYCI 240

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 69  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 129 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 183 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 236
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 237 GHKNEKYCI 245

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 65  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 125 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 179 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 232
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 233 GHKNEKYCI 241

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 63  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 123 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 177 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 230
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 231 GHKNEKYCI 239

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 238 GHKNEKYCI 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 235 GHKNEKYCI 243

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +  GK  K     TL      V+A+  +   S++   S DGL   W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 235 GHKNEKYCI 243

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           H   +S ++   D  LL +AS D+T K+W +S  KCL+++  H + V     +    LI 
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +V++W  +     T   L +TL      V+A+  +   S++   S DGL   W+
Sbjct: 127 SGSFDESVRIWDVK-----TGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
                + G  LK         ++ +  +  GK + + + D T+ +W  D +   CL   T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
           GH     C+
Sbjct: 235 GHKNEKYCI 243

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
           HS+ V C + +    L+ + S+D + ++W +    CL+++ AH D V++V  + +G LI 
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           + S DG  ++W        +   L   +      V+ +  S +   +   + D  +  W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
             K    G  LK   GHK    C+ A      GK + SGS D  + +W         +  
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
           L GHT  V
Sbjct: 278 LQGHTDVV 285

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 57/304 (18%)
Query: 55  DLLYTGSDSKNIRVWKNLKEFCGFKAS-------SGLVKAIVIS--GEKIFTGHQDGKIR 105
           D++ + S  K+I +WK  K+   +  +       S  V+ +V+S  G+   +G  DG++R
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRT-ALWIR------------ 152
           +W ++    +      T   L   F  S+     +   R RT  LW              
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 153 --HSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208
             H D VSC+    +     + +ASWD+T KVW +S+ K   +++ H   V++V  S +G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 209 -LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267
            L  +G  DG V +W   +  K          L+    + AL  S +R  + C +++  +
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYS-------LEANSVIHALCFSPNRYWL-CAATEHGI 625
Query: 268 NFWERE----------------KQLSHGGVLKGHKLAVLCL----AAAGKLVFSGSADKT 307
             W+ E                ++  + G     +  + C     +A G  +FSG  D  
Sbjct: 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685
Query: 308 ICVW 311
           I VW
Sbjct: 686 IRVW 689

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 46/317 (14%)
Query: 33  QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFCGF-------KASS 82
           Q  L G+L    G +  +A +    D++ + S  K I +WK  ++   +       +  S
Sbjct: 27  QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86
Query: 83  GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS-------- 132
             V  +VIS  G+   +G  DG +R+W ++    +      T   L   F S        
Sbjct: 87  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 133 ----SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDS 186
               +IK  N + V ++ T     HS+ VSC+    +    ++ +  WD+  KVW +++ 
Sbjct: 147 SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245
           K   +   H   +N+V  S +G L  +G  DG   +W   +     KH      L     
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT---LDGGDI 258
Query: 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------SHGGVLKGHKLAVLCLAAA 295
           + AL  S +R  + C ++   +  W+ E ++          S     +  +   L  +A 
Sbjct: 259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317
Query: 296 GKLVFSGSADKTICVWR 312
           G+ +F+G  D  + VW+
Sbjct: 318 GQTLFAGYTDNLVRVWQ 334

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 46/317 (14%)
Query: 33  QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFCGF-------KASS 82
           Q  L G+L    G +  +A +    D++ + S  K I +WK  ++   +       +  S
Sbjct: 4   QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 83  GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS-------- 132
             V  +VIS  G+   +G  DG +R+W ++    +      T   L   F S        
Sbjct: 64  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 133 ----SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDS 186
               +IK  N + V ++ T     HS+ VSC+    +    ++ +  WD+  KVW +++ 
Sbjct: 124 SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245
           K   +   H   +N+V  S +G L  +G  DG   +W   +     KH      L     
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT---LDGGDI 235
Query: 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------SHGGVLKGHKLAVLCLAAA 295
           + AL  S +R  + C ++   +  W+ E ++          S     +  +   L  +A 
Sbjct: 236 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 294
Query: 296 GKLVFSGSADKTICVWR 312
           G+ +F+G  D  + VW+
Sbjct: 295 GQTLFAGYTDNLVRVWQ 311

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
           H+D+V  +S D    LL + S D T K+W     +C+ ++  HD  V+SV     G  I 
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           + S D T+K+W+  Q G   K     T       V  +  +   +++   S+D  V  W 
Sbjct: 209 SASRDKTIKMWEV-QTGYCVK-----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 272 REKQLSHGGVLKGHKLAVLCLAAA----------------------GKLVFSGSADKTIC 309
              +      L+ H+  V C++ A                      G  + SGS DKTI 
Sbjct: 263 VATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 310 VWRRDGAIHTCLSVLTGHTGPVK 332
           +W  D +   CL  L GH   V+
Sbjct: 322 MW--DVSTGMCLMTLVGHDNWVR 342

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 166 CG-LLYTASWDRTFKVWRIS--DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKV 221
           CG  L +AS+D T  +W+ +  D +C+ ++  H++ V SV  +  G L+ T S D +V V
Sbjct: 72  CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW-EREKQLSHGG 280
           W+ ++  +   +     L      V  +V   S+ ++   S D  V  + E E       
Sbjct: 132 WEVDEEDE---YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 281 VLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRR 313
            L+GH+  V  LA   +G+ + S S D+T+ +WR+
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 35/192 (18%)
Query: 169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKRE-- 225
           L + S DRT ++W +   +C  ++S  D      VS  +G  I  GS D  V+VW  E  
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 226 --------QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW------- 270
                   ++  GT H         + +V ++V +     V  GS D  V  W       
Sbjct: 240 FLVERLDSENESGTGH---------KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 271 EREKQLSHGGVLK----GHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVL 324
           + + +  + G  +    GHK  VL +A     + + SGS D+ +  W +       L +L
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLML 348
Query: 325 TGHTGPVKCLAV 336
            GH   V  +AV
Sbjct: 349 QGHRNSVISVAV 360

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +     +I 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            +V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +     +I 
Sbjct: 58  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 118 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 169
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            +V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 170 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +     +I 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            +V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +     +I 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            +V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +     +I 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            +V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 109/292 (37%), Gaps = 63/292 (21%)
Query: 42  REEGHI-----YSLAASKDLLYTGSDSKNIRVWKNLKEFCGFK----ASSGLVKAIVISG 92
           R EGH       +L+ + +   + S   ++R+W      C +K        L  A     
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 93  EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152
            +I +G +D  +RVW +  K + +H  +                         R A    
Sbjct: 122 RQIVSGGRDNALRVWNV--KGECMHTLS-------------------------RGA---- 150
Query: 153 HSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L 209
           H+D VSC+      D  ++ +  WD   KVW ++  + +  +  H + V SV  S +G L
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
             +   DG  ++W   + G+      A   + Q C       S +R  +   +  G+  F
Sbjct: 211 CASSDKDGVARLWDLTK-GEALSEMAAGAPINQIC------FSPNRYWMCAATEKGIRIF 263
Query: 270 WEREKQL------SHGGVLKGHKLAVLCLAAA----GKLVFSGSADKTICVW 311
               K +       H G     K+   C++ A    G  ++SG  D  I VW
Sbjct: 264 DLENKDIIVELAPEHQG---SKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 11/182 (6%)
Query: 161 SLDQDCGLLYTASWDRTFKVWRIS-DSKCLESV---SAHDDAVNSVV-SSSEGLIFTGSA 215
           S D   G+L T S DR  K+  +  D   L  V   +AH  A+ SV       L+  GS 
Sbjct: 19  SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 216 DGTVKVWKREQHGKGT-KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274
           D TV +W +E+    T +  L   +   E  V  +  S+    +   S D  V  WE ++
Sbjct: 79  DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 275 ---QLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
              +     VL+ H   V  +    +  L+ S S D T+ +W+       C++VL GH G
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 330 PV 331
            V
Sbjct: 199 TV 200

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95  IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
           + +  QDGK+ +W     N+ VH                       G L  +  I+    
Sbjct: 70  LLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  N + V R        H+  +SC     D   + T+S D T  +W I   +   + + 
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
           H   V S+  + +  +F +G+ D + K+W  RE   +       QT    E  + A+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
            + +    GS D     ++ R  Q     SH  ++ G  +  +  + +G+L+ +G  D  
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
             VW  D        VL GH   V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95  IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
           + +  QDGK+ +W     N+ VH                       G L  +  I+    
Sbjct: 70  LLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  N + V R        H+  +SC     D   + T+S D T  +W I   +   + + 
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
           H   V S+  + +  +F +G+ D + K+W  RE   +       QT    E  + A+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
            + +    GS D     ++ R  Q     SH  ++ G  +  +  + +G+L+ +G  D  
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
             VW  D        VL GH   V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
           H+  VS ++L Q+     ++SWD+T ++W +      +    H   V SV  S +   I 
Sbjct: 75  HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 212 TGSADGTVKVW-----------KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260
           +  A+  +K+W           ++E H           ++K    V            Y 
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA-------PYF 187
Query: 261 GSS--DGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
            S   DG +  W    Q+ +    K H+  V  L ++  GK + +G  DK + +W
Sbjct: 188 ASVGWDGRLKVWNTNFQIRY--TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%)
Query: 153 HSDAVSCMSLDQ-DCGLLYTASWDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEGL 209
           H+  V  +S++  +  +  + S D T ++W  RI+ S+ + +   H+  +NSV    +G 
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 210 IF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267
            F TGS DGT +++  R  H     +        +   VT++  S S  +++ G S+G  
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 268 NFWER---EKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDG 315
             W+    E  L+ G +   H  +++ L L++ G  + +GS DK + +W   G
Sbjct: 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
           HS  V   +L  D     +ASWD+T ++W ++  +  +    H   V SV +      I 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
           +GS D T+KVW         K     TLL     V+ + V         S +I+  G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
             V  W    Q        GH   +  L A+  G L+ S   D  I +W 
Sbjct: 176 KXVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95  IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
           + +  QDGK+ +W     N+ VH                       G L  +  I+    
Sbjct: 70  LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  N + V R        H+  +SC     D   + T+S D T  +W I   +   + + 
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
           H   V S+  + +  +F +G+ D + K+W  RE   +       QT    E  + A+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
            + +    GS D     ++ R  Q     SH  ++ G  +  +  + +G+L+ +G  D  
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
             VW  D        VL GH   V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95  IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
           + +  QDGK+ +W     N+ VH                       G L  +  I+    
Sbjct: 70  LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  N + V R        H+  +SC     D   + T+S D T  +W I   +   + + 
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
           H   V S+  + +  +F +G+ D + K+W  RE   +       QT    E  + A+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
            + +    GS D     ++ R  Q     SH  ++ G  +  +  + +G+L+ +G  D  
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
             VW  D        VL GH   V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Query: 39  SLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLV---KAIVISGEKI 95
           +L+  +G++ SL+    ++ +GS  K  +VWK        +A +  V   K +  S  K 
Sbjct: 99  TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158
Query: 96  FTGHQDGKIRVW---KISPKNQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALWI 151
            T   D  I++W   K+      +H      L  + D    S      I++    T   +
Sbjct: 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Query: 152 R----HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE 207
           R    H   V C+ L  + G + +   DRT ++W   +    + ++    ++ SV   S 
Sbjct: 219 RTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 208 GLIFTGSADGTVKVWKREQ 226
           G I  GS+D  V+++ +E+
Sbjct: 278 GDIIVGSSDNLVRIFSQEK 296

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95  IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
           + +  QDGK+ +W     N+ VH                       G L  +  I+    
Sbjct: 81  LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  N + V R        H+  +SC     D   + T+S D T  +W I   +   + + 
Sbjct: 140 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 193
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
           H   V S+  + +  +F +G+ D + K+W  RE   +       QT    E  + A+   
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 246
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
            + +    GS D     ++ R  Q     SH  ++ G  +  +  + +G+L+ +G  D  
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 304
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
             VW  D        VL GH   V CL V +D
Sbjct: 305 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 334

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF-TGSADGTVKVWKREQHGKGTKH 233
           D+   VW +   +C+++   H+  VNSV     G  F +GS D T +++      +   +
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLC 291
           S    +       +++  S S  +++ G +D  +N W+  K  S   +L GH  +++ L 
Sbjct: 279 SKESIIF----GASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLR 333
Query: 292 LAAAGKLVFSGSADKTICVW 311
           ++  G    SGS D T+ VW
Sbjct: 334 VSPDGTAFCSGSWDHTLRVW 353

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 50  LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
             A K+ +  GSD   IRV  +   ++   F+A    +++I +   K  + +G  D  ++
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
           +W                        +PK+ S         T+K        P+  +   
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
           + R   ++ +           D   + TAS D T K+W      C+ ++  H   V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262
              +  +I +GS DGT+K+W    +    + +L   L +  C  T    +  ++ +  G 
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATH--PTGRKNYIASGF 291
Query: 263 SDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG 302
            +G               VL  G+    L L   GKLV+SG
Sbjct: 292 DNGFT-------------VLSLGNDEPTLSLDPVGKLVWSG 319

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 43/278 (15%)
Query: 47  IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRV 106
           I+   A + +L    D K+  V +N +EF              + G + F       +++
Sbjct: 530 IHEFVAYRHIL----DEKDCAVCENFQEFLSLNGH--------LLGRQPFPN----IVQL 573
Query: 107 WKISPKNQSVHKRA----------GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
               P+   V+++A          G L  L+ I K +IK  + + VR H        +DA
Sbjct: 574 GLCEPETSEVYRQAKLQAKQEGDTGRL-YLEWINKKTIKNLSRLVVRPH--------TDA 624
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGSA 215
           V      QD   + +   D+T +V++    + L  + AH+D V     SS +  I T SA
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275
           D  VK+W     GK   H+  +   +  C        S+  ++  GS+D  +  W+  ++
Sbjct: 685 DKKVKIWDSAT-GKLV-HTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
                +  GH  +V     +   +L+ S SAD T+ +W
Sbjct: 741 ECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 43/278 (15%)
Query: 47  IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRV 106
           I+   A + +L    D K+  V +N +EF              + G + F       +++
Sbjct: 523 IHEFVAYRHIL----DEKDCAVCENFQEFLSLNGH--------LLGRQPFPN----IVQL 566
Query: 107 WKISPKNQSVHKRA----------GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
               P+   V+++A          G L  L+ I K +IK  + + VR H        +DA
Sbjct: 567 GLCEPETSEVYRQAKLQAKQEGDTGRL-YLEWINKKTIKNLSRLVVRPH--------TDA 617
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGSA 215
           V      QD   + +   D+T +V++    + L  + AH+D V     SS +  I T SA
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275
           D  VK+W     GK   H+  +   +  C        S+  ++  GS+D  +  W+  ++
Sbjct: 678 DKKVKIWDSAT-GKLV-HTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
                +  GH  +V     +   +L+ S SAD T+ +W
Sbjct: 734 ECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 770

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 50  LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
             A K+ +  GSD   IRV  +   ++   F+A    +++I +   K  + +G  D  ++
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
           +W                        +PK+ S         T+K        P+  +   
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
           + R   ++ +           D   + TAS D T K+W      C+ ++  H   V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262
              +  +I +GS DGT+K+W    +    + +L   L +  C  T    +  ++ +  G 
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATH--PTGRKNYIASGF 291
Query: 263 SDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG 302
            +G               VL  G+    L L   GKLV+SG
Sbjct: 292 DNGFT-------------VLSLGNDEPTLSLDPVGKLVWSG 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.16
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.1
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.75
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.57
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.41
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.31
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.23
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.08
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.91
3ott_A	758	Two-component system sensor histidine kinase; beta	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.81
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.41
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.32
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.28
3ott_A	758	Two-component system sensor histidine kinase; beta	97.24
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.1
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.98
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.92
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.85
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.64
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.64
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.51
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.49
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.4
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.31
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.15
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.08
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.01
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.99
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.57
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.34
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.81
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	94.77
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.41
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.64
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	91.8
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	91.1
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	90.38
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	89.67
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.56
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.25
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.46

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6e-50  Score=333.92  Aligned_cols=281  Identities=20%  Similarity=0.267  Sum_probs=247.3

Q ss_pred             CceeeeccCcCCcEEEEEecC------CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           34 NGLIGSLVREEGHIYSLAASK------DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      +.+.+.+.+|.+.|++++|++      ++|+||+.|++|++||....    ...+.+|...|.+++++  +.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            445677889999999999964      38999999999999997643    33578999999999998  6799999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ++|++||+.+++....                                +..|...+.+++|+|++++|++++.|+.|++|
T Consensus       102 ~~i~lWd~~~~~~~~~--------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKS--------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF  149 (321)
T ss_dssp             SEEEEEETTTTEEEEE--------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred             CcEEEEECCCCCEEEE--------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            9999999987753222                                23377788999999999999999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      |+++++....+..+...|.+++|+|++ +|++|+.|+.|++||++..      .....+.+|..+|.+++|+|++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCCEEEE
Confidence            999999999999999999999999999 9999999999999999865      356677889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      |+.|+.|++||+++.... ..+.+|...+.+  ++|++++|++|+.|++|++||+.+.  .++..+.+|...|++++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECC
Confidence            999999999999876554 567788877755  5568999999999999999999876  77888999999999999999


Q ss_pred             CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++.            .|++++.|++|++|
T Consensus       301 ~g~------------~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          301 NGS------------KIVSVGDDQEIHIY  317 (321)
T ss_dssp             TSS------------EEEEEETTCCEEEE
T ss_pred             CCC------------EEEEEeCCCeEEEE
Confidence            999            78899999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.8e-50  Score=344.72  Aligned_cols=283  Identities=22%  Similarity=0.352  Sum_probs=249.8

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      .......+.+|.++|++++|+++  +|++|+.||+|++||+.+  ....+.+|...|.+++|+  +++|++|+.||+|++
T Consensus        97 ~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C           97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL  176 (410)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            33445678899999999999865  999999999999999874  456788999999999998  789999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      ||+.+.+....                                +.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus       177 wd~~~~~~~~~--------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          177 WDFQGFECIRT--------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             EETTSSCEEEC--------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             EeCCCCceeEE--------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            99987653222                                2349999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-----------
Q 047325          187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-----------  254 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------  254 (368)
                      +++..+.+|...|.++.+++++ .+++|+.|+.|++||++..      .....+..|...|.+++|+|+           
T Consensus       225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  298 (410)
T 1vyh_C          225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATG  298 (410)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence            9999999999999999999999 9999999999999999865      245667789999999999996           


Q ss_pred             ---------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325          255 ---------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       255 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  323 (368)
                               +.+|++|+.|+.|++||++++... ..+.+|...+.+  ++|++++|++|+.||.|++||+.+.  +++..
T Consensus       299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--~~~~~  375 (410)
T 1vyh_C          299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKT  375 (410)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEE
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEE
Confidence                     678999999999999999987655 566778877754  5568999999999999999998766  67888


Q ss_pred             eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +.+|...|++++|+|++.            .|++|+.|++||+|.
T Consensus       376 ~~~h~~~v~~l~~~~~~~------------~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          376 LNAHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EECCSSCEEEEEECSSSS------------CEEEEETTSEEEEEC
T ss_pred             EcCCCCcEEEEEEcCCCC------------EEEEEeCCCcEEEEe
Confidence            899999999999999999            789999999999994

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-48  Score=327.98  Aligned_cols=286  Identities=21%  Similarity=0.325  Sum_probs=245.4

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      .....++.+|.+.|++++|+++  +|++|+.||+|++||..+  ....+..|...|.+++|+  +++|++|+.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            4556789999999999999865  999999999999999764  456678899999999998  7899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      ++.+.+....                            ....+.+|...|.++.|++++ .+++++.|+.|++||+.+++
T Consensus       125 ~~~~~~~~~~----------------------------~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~  175 (340)
T 1got_B          125 NLKTREGNVR----------------------------VSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             ETTTCSBSCE----------------------------EEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred             ECccCCCcce----------------------------eEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence            9976542110                            122345699999999999876 48899999999999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .+..+.+|...|.+++|+|++ ++++|+.|+.|++||++..      .....+.+|...|.+++|+|++++|++|+.||.
T Consensus       176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            999999999999999999999 9999999999999999865      346677889999999999999999999999999


Q ss_pred             EEEEeCCCccccceeee-cc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          267 VNFWEREKQLSHGGVLK-GH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      |++||+++......... .+  ....++++|++++|++|+.||.|++||+...  ..+..+.+|..+|++++|+|++.  
T Consensus       250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~s~dg~--  325 (340)
T 1got_B          250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGM--  325 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSS--
T ss_pred             EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC--cEeeEeecCCCcEEEEEEcCCCC--
Confidence            99999987655422211 12  2334667789999999999999999998776  66778899999999999999999  


Q ss_pred             ecCCcceEEEEEeeCCcccccccCC
Q 047325          344 SSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       344 ~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                                .|+||+.|++|++|.
T Consensus       326 ----------~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 ----------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ----------CEEEEETTSCEEEEC
T ss_pred             ----------EEEEEcCCccEEecC
Confidence                      789999999999994

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-47  Score=324.08  Aligned_cols=286  Identities=21%  Similarity=0.287  Sum_probs=244.9

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~  108 (368)
                      ....++.+|.+.|++++|+++  +|+||+.||+|++||...  ....+..|...|.+++|+  +.+|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            456789999999999999865  999999999999999764  345677888999999998  88999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      +.........                          .....+.+|...|.++.|+|++..|++++.|++|++||++++++
T Consensus       135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~  188 (354)
T 2pbi_B          135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL  188 (354)
T ss_dssp             CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence            8754321110                          11233456999999999999999999999999999999999999


Q ss_pred             EEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325          189 LESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG  265 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  265 (368)
                      +..+.+|...|.+++++|+  + .|++|+.||.|++||++..      .+...+..|...|.+++|+|++++|++++.|+
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            9999999999999999874  4 9999999999999999875      34667788999999999999999999999999


Q ss_pred             cEEEEeCCCccccceeeecc----ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          266 LVNFWEREKQLSHGGVLKGH----KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      .|++||++...... .+..+    .....+++|++++|++|+.|+.|++||+..+  ..+..+.+|..+|++++|+|++.
T Consensus       263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG--SRVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC--ceEEEEECCCCcEEEEEECCCCC
Confidence            99999998765432 22222    2344677789999999999999999998776  56778889999999999999999


Q ss_pred             eeecCCcceEEEEEeeCCcccccccC
Q 047325          342 SSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       342 ~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                  .|++|+.|++|++|
T Consensus       340 ------------~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          340 ------------AFCSGSWDHTLRVW  353 (354)
T ss_dssp             ------------CEEEEETTSEEEEE
T ss_pred             ------------EEEEEcCCCCEEec
Confidence                        78999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=321.54  Aligned_cols=277  Identities=18%  Similarity=0.187  Sum_probs=222.9

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-------------ceecccCCCCCeeEEEEe-CCEEEEEeCCCeE
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-------------EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKI  104 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-------------~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i  104 (368)
                      ..|...|.+++|+++  +|++++ |+++|+||...             .......+...|.+++|+ ++.|++|+.||+|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v  105 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV  105 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence            457788999999866  777666 77888887321             011123456789999999 6789999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      ++||+++++......                            ..+.+|.+.|++++|+|++++|++|+.|++|++||++
T Consensus       106 ~lWd~~~~~~~~~~~----------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B          106 ELWELDENETLIVSK----------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEEEECTTSSCEEEE----------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEeccCCCceeEee----------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            999999876432211                            1234599999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC-CCCEEE
Q 047325          185 DSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS-SRSIVY  259 (368)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~  259 (368)
                      +++++..+.+|...|.+++|++++  +|++++.|+.|++||++....      ...+  ..+...+.+++|+| ++++|+
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC------EEECC----CCCEEEEEECSSCTTEEE
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce------eeeeecceeeccceeeeecCCCCcceE
Confidence            999999999999999999999987  789999999999999987632      2222  34556789999999 456889


Q ss_pred             EecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325          260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV  336 (368)
Q Consensus       260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~  336 (368)
                      +|+.||.|++||+++++.. ..+.+|...|.++.  |++ ++|++|+.|++|+|||+.++  + +..+.+|.+.|++++|
T Consensus       232 sg~~dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~-~~~~~~H~~~V~~v~~  307 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCV-LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS--E-LFRSQAHRDFVRDATW  307 (344)
T ss_dssp             EEETTSEEEEEESCC--CC-EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--E-EEEECCCSSCEEEEEE
T ss_pred             EeccCCcEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--c-EEEEcCCCCCEEEEEE
Confidence            9999999999999987655 56778888876554  566 68999999999999998876  3 3457899999999999


Q ss_pred             ecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          337 EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       337 ~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|++..           +|+|||.|++|++|
T Consensus       308 sp~~~~-----------llas~s~D~~v~~w  327 (344)
T 4gqb_B          308 SPLNHS-----------LLTTVGWDHQVVHH  327 (344)
T ss_dssp             CSSSTT-----------EEEEEETTSCEEEE
T ss_pred             eCCCCe-----------EEEEEcCCCeEEEE
Confidence            999873           56788888888887

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.7e-47  Score=313.25  Aligned_cols=267  Identities=18%  Similarity=0.254  Sum_probs=229.7

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~  108 (368)
                      ++.+++.+|.+.|.+++|+++  +|++|+.||+|++||+.+.  +..+..|..+|.+++|.  +++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            456789999999999999866  9999999999999998754  56778899999999998  88999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K  187 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~  187 (368)
                      +.+++..                                ..+.+|...|.+++|+|++++|++|+.|++|++||++++ .
T Consensus        84 ~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~  131 (304)
T 2ynn_A           84 YNTGEKV--------------------------------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (304)
T ss_dssp             TTTCCEE--------------------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             CCCCcEE--------------------------------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence            9877632                                234459999999999999999999999999999999887 5


Q ss_pred             EEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC--CCCEEEEecC
Q 047325          188 CLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS--SRSIVYCGSS  263 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  263 (368)
                      ....+.+|...|.+++|+|+ + .|++|+.|+.|++||++....     .......+...+..+.|+|  ++++|++|+.
T Consensus       132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            66788899999999999994 4 899999999999999976532     2233345667899999987  7789999999


Q ss_pred             CCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          264 DGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      |+.|++||++++... ..+.+|...+.  +++|++++|++|+.||+|++||+.+.  +.+..+..|...+.+++|+|++.
T Consensus       207 D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGR  283 (304)
T ss_dssp             TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCSSSSEEEEEECTTCG
T ss_pred             CCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeeccCCCccEEEEEECCCCC
Confidence            999999999987655 56778877774  55678999999999999999998876  67888889999999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-47  Score=317.79  Aligned_cols=295  Identities=20%  Similarity=0.253  Sum_probs=229.3

Q ss_pred             CCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcc----eecc-cC-CCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE----FCGF-KA-SSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~----~~~~-~~-~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      +..+++.++.+|.++|++++|++++|++|+.|++|++||+...    ...+ .. |...|.+++|+  +++|++|+.|++
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3455678899999999999999999999999999999998742    2233 34 99999999998  789999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |++||++.......                         .......+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        82 v~iw~~~~~~~~~~-------------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           82 VSIWAKEESADRTF-------------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             EEEEEC-------C-------------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             EEEEEcccCcCccc-------------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            99999864321000                         00112345579999999999999999999999999999999


Q ss_pred             cC----CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC--CC
Q 047325          184 SD----SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS--RS  256 (368)
Q Consensus       184 ~~----~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  256 (368)
                      +.    .+++..+.+|...|.+++|+|++ +|++++.|+.|++||.+...    ..+...+.+|...|.+++|+|+  +.
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCee
Confidence            43    35678889999999999999999 99999999999999986531    1345677889999999999998  67


Q ss_pred             EEEEecCCCcEEEEeCCCcc-------ccceeee-ccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeE-eeec
Q 047325          257 IVYCGSSDGLVNFWEREKQL-------SHGGVLK-GHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLS-VLTG  326 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~  326 (368)
                      +|++|+.|+.|++||++...       .....+. .|...+.++.+ .+.+|++++.||.|++|+...+...... ...+
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            89999999999999987542       1112222 37778877776 3568999999999999998766433333 3467


Q ss_pred             ccc-CeeEEEEec--CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          327 HTG-PVKCLAVEE--DRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       327 h~~-~v~~l~~~~--~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |.. .|++++|+|  ++.            .|++|+.||+|++|
T Consensus       293 h~~~~v~~v~~~~~~~~~------------~las~s~Dg~v~~W  324 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKT------------ILATGGDDGIVNFW  324 (330)
T ss_dssp             TTTSCEEEEEEC-----C------------CEEEEETTSEEEEE
T ss_pred             cccceEEEEEEecCCCce------------EEEEecCCCcEEEE
Confidence            887 899999999  677            68889999999988

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-47  Score=326.68  Aligned_cols=290  Identities=20%  Similarity=0.312  Sum_probs=239.8

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ......++.+|.+.|++++|+++  +|++|+.||+|++||..+  ....+..|...|.+++|+  +++|++|+.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            34567889999999999999865  999999999999999864  456788999999999998  889999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~  185 (368)
                      |++.+.......                         ......+.+|...|.++.|.|+ +..|++|+.|++|++||+.+
T Consensus       135 w~~~~~~~~~~~-------------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~  189 (380)
T 3iz6_a          135 FNLSSQADRDGN-------------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT  189 (380)
T ss_dssp             EECCCCSSCCCS-------------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT
T ss_pred             EECCCCccccCC-------------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC
Confidence            999764321100                         0011234569999999999996 45799999999999999999


Q ss_pred             CeEEEEe-----ecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          186 SKCLESV-----SAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       186 ~~~~~~~-----~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ++.+..+     .+|...|.++.+++ ++ ++++|+.|+.|++||++....     ....+.+|...|.+++|+|++++|
T Consensus       190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l  264 (380)
T 3iz6_a          190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRF  264 (380)
T ss_dssp             CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEE
T ss_pred             CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeE
Confidence            9988877     57889999999987 55 999999999999999985432     466778899999999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeecc---------ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee----e
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGH---------KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL----T  325 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~  325 (368)
                      ++|+.||.|++||++++..... +..+         ....++++|++++|++|+.||.|++||+...  +.+..+    .
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~  341 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQV-YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA--EMVLNLGTLQN  341 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEE-ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC--CEEEEECCSCS
T ss_pred             EEEcCCCeEEEEECCCCcEEEE-ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC--ceEEEEecccC
Confidence            9999999999999998765432 2211         1345778889999999999999999998765  344444    6


Q ss_pred             ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|.+.|++++|+|++.            .|+||+.|++|++|
T Consensus       342 ~h~~~v~~l~~s~dg~------------~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          342 SHEGRISCLGLSSDGS------------ALCTGSWDKNLKIW  371 (380)
T ss_dssp             SCCCCCCEEEECSSSS------------EEEEECTTSCEEEE
T ss_pred             CCCCceEEEEECCCCC------------EEEEeeCCCCEEEE
Confidence            7999999999999999            67888888888887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-46  Score=319.14  Aligned_cols=280  Identities=20%  Similarity=0.238  Sum_probs=223.7

Q ss_pred             cCcCCcEEEEEecCC--EEEEccC------CCcEEEEcCCcc------eecccCCCCCeeEEEEe-CCEEEEEeCCCeEE
Q 047325           41 VREEGHIYSLAASKD--LLYTGSD------SKNIRVWKNLKE------FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIR  105 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~------dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~  105 (368)
                      .+|++.|.+++|+++  +||+|+.      |+.|++|+..+.      ......|...|.+++|+ .+.+++++.||+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            479999999999866  9999997      778999987543      22345788999999999 66888999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||+.+++.......                            ...+|...|++++|+|++++|++++.|+.|++||+++
T Consensus       119 lWd~~~~~~~~~~~~----------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B          119 LWEILEKESLLVNKF----------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EC--------CCCCE----------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EeeccccceeEEEee----------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999988764332211                            1234899999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEec
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGS  262 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  262 (368)
                      ++.+..+.+|...|.+++|++++  .+++++.|+.|++||++....    ........+...+.+++|+|+ +.+|++|+
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee
Confidence            99999999999999999999987  789999999999999987633    122234456778999999997 56899999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec-
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE-  338 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~-  338 (368)
                      .|+.|++||+++++.. ..+.+|...+.++.  |++ ++|++|+.||+|+|||++++  +.+.. .+|.+.|++|+|+| 
T Consensus       247 ~d~~i~~wd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--~~~~~-~~H~~~V~~vafsP~  322 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSA-QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--EVFRD-LSHRDFVTGVAWSPL  322 (357)
T ss_dssp             SSSCEEEEESSCGGGC-EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--EEEEE-CCCSSCEEEEEECSS
T ss_pred             cccceeEEECCCCcEe-EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--cEeEE-CCCCCCEEEEEEeCC
Confidence            9999999999987655 56677877776555  565 68999999999999998876  44444 47999999999998 


Q ss_pred             CCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ++.            .|+|||.|++|++|+
T Consensus       323 d~~------------~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          323 DHS------------KFTTVGWDHKVLHHH  340 (357)
T ss_dssp             STT------------EEEEEETTSCEEEEE
T ss_pred             CCC------------EEEEEcCCCeEEEEE
Confidence            677            677777788887773

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.3e-46  Score=310.78  Aligned_cols=279  Identities=22%  Similarity=0.373  Sum_probs=232.2

Q ss_pred             ceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           35 GLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      .+..++.+|.+.|++++|++   ++|++|+.|++|++|++..       .+..+.+|...|.+++|+  +.+|++|+.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            45678999999999999974   4999999999999999752       245688999999999998  78999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      +|++||+.+++..                                ..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus        88 ~v~~wd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           88 TLRLWDVATGETY--------------------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEEECCCCCee--------------------------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            9999999877532                                23455999999999999999999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCC------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSE------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR  255 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (368)
                      ++ ++.+..+.+|...|.++.+.|.      + .+++++.|+.|++||++..      .....+.+|...|.+++|+|++
T Consensus       136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------QIEADFIGHNSNINTLTASPDG  208 (319)
T ss_dssp             TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT------EEEEEECCCCSCEEEEEECTTS
T ss_pred             CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------hhheeecCCCCcEEEEEEcCCC
Confidence            96 5677888899999999999884      3 7999999999999999864      3456677899999999999999


Q ss_pred             CEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee--------cc
Q 047325          256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT--------GH  327 (368)
Q Consensus       256 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h  327 (368)
                      ++|++++.||.|++||+++.+.............++++|++.+|++++.+ .+++|+++..  ..+..+.        .|
T Consensus       209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~--~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ--YLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTE--EEEEEECCCCTTCCGGG
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC--eeeeccCccccccccCc
Confidence            99999999999999999987665433333334447777899999988755 5999998765  3333332        35


Q ss_pred             ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ...+.+++|+|+|+            .|++|+.|+.|++|
T Consensus       286 ~~~v~~~~~spdg~------------~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          286 EPHAVSLAWSADGQ------------TLFAGYTDNVIRVW  313 (319)
T ss_dssp             CCCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred             CcceeEEEECCCCC------------EEEEeecCceEEEE
Confidence            67799999999999            56777777777776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-45  Score=306.87  Aligned_cols=284  Identities=22%  Similarity=0.384  Sum_probs=241.0

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR  105 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  105 (368)
                      |...+..++.+|.+.|++++|+++  +|++|+.||.|++|+...  ....+.+|...|.+++|+  +++|++++.||.|+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            456677889999999999999865  999999999999999864  355678999999999998  78999999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||+++++..                                ..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus        91 vwd~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  138 (312)
T 4ery_A           91 IWDVSSGKCL--------------------------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT  138 (312)
T ss_dssp             EEETTTCCEE--------------------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCcEE--------------------------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            9999876532                                22345899999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ++.+..+..|..+|.+++|+|++ ++++++.||.|++||++....     .......+...+..++|+|++++|++++.|
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            99999999999999999999999 999999999999999986532     122234566789999999999999999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEE----EEEE-eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAV----LCLA-AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      |.|++||+++++.. ..+.+|....    ..+. +++.+|++|+.||.|++||+.+.  +.+..+.+|...|.+++|+|+
T Consensus       214 ~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~  290 (312)
T 4ery_A          214 NTLKLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTDVVISTACHPT  290 (312)
T ss_dssp             TEEEEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc--hhhhhhhccCCcEEEEeecCc
Confidence            99999999987654 3444554322    2334 46889999999999999999876  678889999999999999999


Q ss_pred             CeeeecCCcceEEEEEeeCC--cccccccC
Q 047325          340 RDSSSSTSSCAQRWIVYSGS--LDKSDDDV  367 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~--~D~~v~i~  367 (368)
                      +.            .+++++  .|++|++|
T Consensus       291 ~~------------~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          291 EN------------IIASAALENDKTIKLW  308 (312)
T ss_dssp             SS------------EEEEEECTTTCCEEEE
T ss_pred             CC------------ceEEEEccCCccEEEe
Confidence            99            566654  68888887

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.4e-46  Score=312.39  Aligned_cols=281  Identities=19%  Similarity=0.282  Sum_probs=226.3

Q ss_pred             CceeeeccCcCCcEEEEEe-----c---CCEEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe--CCE
Q 047325           34 NGLIGSLVREEGHIYSLAA-----S---KDLLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS--GEK   94 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~-----~---~~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~--~~~   94 (368)
                      ......+.+|.+.|++++|     +   +.+|++|+.|++|++||+..         ....+.+|...|.+++|+  +.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4556789999999999998     3   45999999999999999753         234578999999999998  779


Q ss_pred             EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC
Q 047325           95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW  174 (368)
Q Consensus        95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  174 (368)
                      +++|+.|++|++||+++++..                                ..+.+|...|.+++|+|++++|++++.
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~--------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTY--------------------------------KRFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEE--------------------------------EEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             EEEEcCCCcEEEEECCCCcEE--------------------------------EEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            999999999999999876532                                234459999999999999999999999


Q ss_pred             CCcEEEEEccCCeEEEEee---cCCCceEEEEeCCCC-----------eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325          175 DRTFKVWRISDSKCLESVS---AHDDAVNSVVSSSEG-----------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL  240 (368)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  240 (368)
                      |+.|++||+... ......   .|...|.+++|+|++           ++++++.|+.|++||.+.       .....+.
T Consensus       139 d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~  210 (343)
T 2xzm_R          139 EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTFK  210 (343)
T ss_dssp             TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-------EEEEEEE
T ss_pred             CCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-------ceeEEEc
Confidence            999999999743 333333   688899999999874           799999999999999542       2455677


Q ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee-eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325          241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  319 (368)
                      .|...|.+++|+|++++|++|+.||.|++||+.........+ .++....++++|++.++++| .|+.|++|++.+....
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred             CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence            899999999999999999999999999999995443333333 34455557777888887655 5788999999765433


Q ss_pred             eeEeee-----------ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          320 CLSVLT-----------GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       320 ~~~~~~-----------~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .+..+.           +|...|++++|+|++.            .|++|+.||+|++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~------------~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK------------KLFAGFTDGVIRTF  336 (343)
T ss_dssp             SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC------------CEEEEETTSEEEEE
T ss_pred             ceEEeecCcchhhhhhcCCCCceEEEEECCCCC------------eEEEecCCceEEEE
Confidence            322333           6888999999999999            56777777777776

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=313.12  Aligned_cols=288  Identities=20%  Similarity=0.280  Sum_probs=231.5

Q ss_pred             ceeeeccCcCC-cEEEEEecCC--EEEEccCCCcEEEEcCCcce-----ecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325           35 GLIGSLVREEG-HIYSLAASKD--LLYTGSDSKNIRVWKNLKEF-----CGFKASSGLVKAIVIS--GEKIFTGHQDGKI  104 (368)
Q Consensus        35 ~~~~~~~~h~~-~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  104 (368)
                      .++.++.+|.+ .|++++|+++  +||+|+.|++|+|||+....     ....+|...|.+++|+  +++|++|+.|+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            46788999998 9999999865  99999999999999987532     2246899999999998  7899999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      ++|++..+...                              ....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        86 ~iw~~~~~~~~------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           86 CIWKKNQDDFE------------------------------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             EEEEECCC-EE------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             EEEEccCCCeE------------------------------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            99998765321                              122344599999999999999999999999999999998


Q ss_pred             CC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          185 DS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       185 ~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      ++   +++..+.+|...|.+++|+|++ +|++++.|+.|++||.+...    ......+.+|...|.+++|+|++++|++
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~s  211 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLAS  211 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            76   4567788899999999999999 99999999999999987542    1234567889999999999999999999


Q ss_pred             ecCCCcEEEEeCCCcccc--------------ceeee-ccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCce--e--
Q 047325          261 GSSDGLVNFWEREKQLSH--------------GGVLK-GHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIH--T--  319 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~--------------~~~~~-~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~--~--  319 (368)
                      ++.|+.|++||.......              ..... .|...+.++  ++++..|++++.|+.|++|+.+....  .  
T Consensus       212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  291 (345)
T 3fm0_A          212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT  291 (345)
T ss_dssp             EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC
T ss_pred             EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee
Confidence            999999999996422111              01122 266666554  45789999999999999999865321  1  


Q ss_pred             ---eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          320 ---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       320 ---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                         ......+|...|++++|+|++..           .|++|+.||+|++|
T Consensus       292 ~~~~~~~~~~h~~~V~~v~~~p~~~~-----------~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          292 FSLTAHLHQAHSQDVNCVAWNPKEPG-----------LLASCSDDGEVAFW  331 (345)
T ss_dssp             EEEEEEETTSSSSCEEEEEECSSSTT-----------EEEEEETTSCEEEE
T ss_pred             EEEEeeecccccCcEeEeEEeCCCce-----------EEEEcCCCCcEEEE
Confidence               12233579999999999999741           57788888888887

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.7e-44  Score=324.71  Aligned_cols=319  Identities=17%  Similarity=0.208  Sum_probs=238.2

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eeccc-------CCCCCeeEEEEe--CCEEEE
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFK-------ASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~-------~~~~~v~~~~~~--~~~l~s   97 (368)
                      .+..+++.++.+|.+.|.+++|+++  +|++|+.|++|++||..+.  ...+.       +|.+.|.+++|+  +++|++
T Consensus       177 ~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          177 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence            3456677889999999999999865  9999999999999997643  33342       799999999998  789999


Q ss_pred             EeCCCeEEEEeecCCCccccccCCccccce---------eeeeccCCCC-ceeEecc-cceeeeeecCCCEeEEEEcCCC
Q 047325           98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLK---------DIFKSSIKPS-NYIEVRR-HRTALWIRHSDAVSCMSLDQDC  166 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  166 (368)
                      ++.|++|++||+.+++..............         .+........ .+..... .....+.+|...|++++|+|++
T Consensus       257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg  336 (611)
T 1nr0_A          257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG  336 (611)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence            999999999999887654333221100000         0000000000 0011111 1234556899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEEEEe-e----------------------------------------------------
Q 047325          167 GLLYTASWDRTFKVWRISDSKCLESV-S----------------------------------------------------  193 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~~~~~~-~----------------------------------------------------  193 (368)
                      ++|++++.|+.|++||+.+++....+ .                                                    
T Consensus       337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  416 (611)
T 1nr0_A          337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG  416 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence            99999999999999999876543322 0                                                    


Q ss_pred             -----------------------------cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325          194 -----------------------------AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE  243 (368)
Q Consensus       194 -----------------------------~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  243 (368)
                                                   .|...+.+++|+|++ +|++|+.|+.|++||++...    ...... ..|.
T Consensus       417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~----~~~~~~-~~h~  491 (611)
T 1nr0_A          417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS----VSEVKT-IVHP  491 (611)
T ss_dssp             EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE----EEEEEE-EECS
T ss_pred             EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc----eeeeec-cCCC
Confidence                                         022346788999999 99999999999999987531    111222 5788


Q ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-ccccce-eeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325          244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSHGG-VLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  319 (368)
                      ..|.+++|+|++++|++++.|+.|++||+.+ .+.... ....|...|  ++|+|++++|++|+.|++|++|+++.+...
T Consensus       492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~  571 (611)
T 1nr0_A          492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  571 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence            9999999999999999999999999999986 433322 233477777  455678999999999999999999876433


Q ss_pred             eeEeeecc-ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          320 CLSVLTGH-TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       320 ~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .+..+.+| ...|++++|+|++.             |++|+.|++||+|
T Consensus       572 ~~~~~~~h~~~~v~~v~fs~d~~-------------l~s~~~D~~i~lW  607 (611)
T 1nr0_A          572 PIIIKGAHAMSSVNSVIWLNETT-------------IVSAGQDSNIKFW  607 (611)
T ss_dssp             CEEETTSSTTSCEEEEEEEETTE-------------EEEEETTSCEEEE
T ss_pred             cchhhccCcccCeeEEEEcCCCE-------------EEEecCCCCEEEE
Confidence            33567789 89999999999986             6788889999988

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.6e-43  Score=294.70  Aligned_cols=281  Identities=21%  Similarity=0.368  Sum_probs=224.4

Q ss_pred             CceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           34 NGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      ..+..+|.||.+.|++|+|+|   ++|+|||.||+|+|||+.+       ....+.+|...|.+++|+  +++|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            356678999999999999984   4899999999999999753       244678999999999998  7899999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      +.|++|+.........                                ...+...+..+.+.+++++|++++.|+.+++|
T Consensus       108 ~~i~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~  155 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRR--------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW  155 (340)
T ss_dssp             SEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ccceEEeecccceeee--------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence            9999999887653222                                22267788899999999999999999999999


Q ss_pred             EccCCeE-EEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325          182 RISDSKC-LESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI  257 (368)
Q Consensus       182 d~~~~~~-~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  257 (368)
                      |+..... .....+|...+.++++++++   .+++++.|+.|++||++..      .....+.+|...|.+++|+|++++
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~~  229 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGSL  229 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCCE
Confidence            9976554 34556788999999998876   7889999999999999865      356677889999999999999999


Q ss_pred             EEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE---------eeeccc
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS---------VLTGHT  328 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~~h~  328 (368)
                      |++|+.||.|++||+++................+++|++. +++++.|+.|++||++..  ..+.         ...+|.
T Consensus       230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h~  306 (340)
T 4aow_A          230 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGK--IIVDELKQEVISTSSKAEP  306 (340)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTT--EEEEEECCC-------CCC
T ss_pred             EEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCC--eEEEeccccceeeeccCCC
Confidence            9999999999999999876664333333334455555554 556677999999999765  2222         234688


Q ss_pred             cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          329 GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       329 ~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ..|++++|+|++++            |++|+.||.|++|
T Consensus       307 ~~v~~l~~s~dg~~------------l~sgs~Dg~v~iW  333 (340)
T 4aow_A          307 PQCTSLAWSADGQT------------LFAGYTDNLVRVW  333 (340)
T ss_dssp             CCEEEEEECTTSSE------------EEEEETTSCEEEE
T ss_pred             CCEEEEEECCCCCE------------EEEEeCCCEEEEE
Confidence            99999999999994            5555555555555

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.3e-43  Score=300.18  Aligned_cols=279  Identities=24%  Similarity=0.381  Sum_probs=222.5

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCC------------------CCCeeEEEEe--CCEEE
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKAS------------------SGLVKAIVIS--GEKIF   96 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~------------------~~~v~~~~~~--~~~l~   96 (368)
                      .+|.+.|.+++|+++  +||+|+ |+++++|++.+.  +..+..|                  ...|.+++|+  +++|+
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            369999999999865  888876 789999998643  2233332                  2348999998  78999


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR  176 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  176 (368)
                      +|+.||.|++||+++++..                                ..+.+|...|.+++|+|++++|++++.|+
T Consensus       140 s~~~d~~i~iwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIV--------------------------------MILQGHEQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             EEETTSCEEEEETTTTEEE--------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEcCCCeEEEEECCCCcEE--------------------------------EEEccCCCCEEEEEEcCCCCEEEEecCCC
Confidence            9999999999999876532                                23345999999999999999999999999


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~  253 (368)
                      .|++||+++++....+. +...+.+++++| ++ ++++|+.|+.|++||++......... ......+|...|.+++|+|
T Consensus       188 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  266 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  266 (393)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             cEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence            99999999999888776 567799999998 66 99999999999999998653210000 0011256889999999999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      ++++|++|+.|+.|++||+++...           ....+.+|...+.++  ++++.+|++|+.||.|++||+.++  .+
T Consensus       267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~--~~  344 (393)
T 1erj_A          267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NP  344 (393)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--CE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC--eE
Confidence            999999999999999999875322           123456777777555  457999999999999999998876  67


Q ss_pred             eEeeeccccCeeEEEEec------CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          321 LSVLTGHTGPVKCLAVEE------DRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       321 ~~~~~~h~~~v~~l~~~~------~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +..+.+|...|.+++|++      ++.            .|+||+.||+||+|
T Consensus       345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~------------~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          345 LLMLQGHRNSVISVAVANGSSLGPEYN------------VFATGSGDCKARIW  385 (393)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCE------------EEEEEETTSEEEEE
T ss_pred             EEEECCCCCCEEEEEecCCcCcCCCCC------------EEEEECCCCcEEEC
Confidence            788899999999999986      566            68899999999988

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-43  Score=315.61  Aligned_cols=278  Identities=27%  Similarity=0.434  Sum_probs=241.3

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ..+.+..+.+|.+.|.+++|+++  +|++++.||+|++||... .+..+..|...|.+++|+  +++|++++.||.|++|
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            45667788999999999999865  999999999999999864 456788999999999998  7899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |... +.                                ...+.+|...|++++|+|++++|++++.|+.|++||. +++
T Consensus       372 ~~~~-~~--------------------------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~  417 (577)
T 2ymu_A          372 NRNG-QL--------------------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ  417 (577)
T ss_dssp             ETTC-CE--------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred             cCCC-CE--------------------------------EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence            9542 21                                1223458999999999999999999999999999995 678


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .+..+.+|...|.+++|+|++ +|++++.|+.|++||....       ....+.+|...|.+++|+|++++|++++.|+.
T Consensus       418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-------~~~~~~~~~~~v~~~~~spd~~~las~~~d~~  490 (577)
T 2ymu_A          418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  490 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            888999999999999999999 9999999999999997532       45677889999999999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          267 VNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      |++||... +. ...+.+|...+.  +++|++++|++++.||.|++||...   +++..+.+|.++|++++|+||++   
T Consensus       491 i~iw~~~~-~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~---~~~~~~~~h~~~v~~~~fs~dg~---  562 (577)
T 2ymu_A          491 VKLWNRNG-QL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQ---  562 (577)
T ss_dssp             EEEEETTS-CE-EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTTSS---
T ss_pred             EEEEcCCC-CE-EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC---CEEEEEcCCCCCEEEEEEcCCCC---
Confidence            99999653 33 356778887775  4567899999999999999998643   67788999999999999999999   


Q ss_pred             cCCcceEEEEEeeCCcccccccCC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                               .|+|++.|++|++|+
T Consensus       563 ---------~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          563 ---------TIASASSDKTVKLWN  577 (577)
T ss_dssp             ---------CEEEEETTSCEEEEC
T ss_pred             ---------EEEEEeCCCEEEEeC
Confidence                     788999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.5e-43  Score=315.79  Aligned_cols=285  Identities=15%  Similarity=0.164  Sum_probs=234.5

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQ  100 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~  100 (368)
                      .++........+.+|.+.|++++|+++  +||+|+.||+|+|||+...    ...+.+|.+.|.+++|+  +++|++++.
T Consensus        44 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~  123 (611)
T 1nr0_A           44 VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE  123 (611)
T ss_dssp             EETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC
T ss_pred             ecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEEC
Confidence            344556777889999999999999865  9999999999999998532    34678899999999999  778988886


Q ss_pred             C----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCC
Q 047325          101 D----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWD  175 (368)
Q Consensus       101 d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  175 (368)
                      +    +.|++||.  ++...                                .+.+|...|++++|+|++. .|++++.|
T Consensus       124 ~~~~~~~v~~wd~--~~~~~--------------------------------~l~gh~~~v~~v~f~p~~~~~l~s~s~D  169 (611)
T 1nr0_A          124 GRERFGHVFLFDT--GTSNG--------------------------------NLTGQARAMNSVDFKPSRPFRIISGSDD  169 (611)
T ss_dssp             CSSCSEEEEETTT--CCBCB--------------------------------CCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             CCCceeEEEEeeC--CCCcc--------------------------------eecCCCCCceEEEECCCCCeEEEEEeCC
Confidence            5    47888874  22111                                1234999999999999986 69999999


Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-------ccccccEE
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-------LKQECAVT  247 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~i~  247 (368)
                      ++|++||..+++.+..+.+|...|.+++|+|++ +|++++.|+.|++||++.+..      ...+       .+|...|.
T Consensus       170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEE
T ss_pred             CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE------eeeeccccccccccCCCEE
Confidence            999999999999999999999999999999999 999999999999999876532      2222       26899999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +++|+|++++|++++.|++|++||+++++.......  .+......+.++++.+++++.||.+++|+....  .....+.
T Consensus       244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~  321 (611)
T 1nr0_A          244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG--SIDQVRY  321 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT--EEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC--CcceEEc
Confidence            999999999999999999999999997765433221  233445667779999999999999999998776  5667788


Q ss_pred             ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|...|++++|+|+++            .|++++.|++|++|
T Consensus       322 gh~~~v~~l~~spdg~------------~l~s~s~D~~v~~W  351 (611)
T 1nr0_A          322 GHNKAITALSSSADGK------------TLFSADAEGHINSW  351 (611)
T ss_dssp             CCSSCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEeCCCC------------EEEEEeCCCcEEEE
Confidence            9999999999999999            45555666666555

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.2e-43  Score=290.79  Aligned_cols=242  Identities=21%  Similarity=0.275  Sum_probs=207.9

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|...|.+++|+  +.+|++++.||+|++||++++....                                .+..
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------~~~~   53 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------SIQV   53 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEEC
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------------------Eeec
Confidence            45688999999999998  7899999999999999998765322                                2334


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++...   
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---  130 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---  130 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---
Confidence            88999999999999999999999999999999999999999999999999999999 99999999999999997542   


Q ss_pred             ccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEe--CCCEEEEeeCCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAA--AGKLVFSGSADK  306 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg  306 (368)
                        .....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++.........+|...+  .++.+  ++.+|++|+.|+
T Consensus       131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence              24456788999999999999 678999999999999999987665544444554444  44544  678999999999


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|++||+++.  .++..+.+|...|++++|+|++.            .|++|+.||+||+|
T Consensus       209 ~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~------------~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          209 TIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLP------------IIISGSEDGTLKIW  255 (304)
T ss_dssp             EEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------EEEEEETTSCEEEE
T ss_pred             eEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCC------------EEEEEcCCCeEEEE
Confidence            9999999876  77889999999999999999999            56666666666666

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-42  Score=293.36  Aligned_cols=294  Identities=14%  Similarity=0.175  Sum_probs=242.6

Q ss_pred             CCccccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEE
Q 047325           22 PGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKI   95 (368)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l   95 (368)
                      +.+....+..-.......+.+|.+.|++++|+++  +|++|+.||.|++||+.+  ....+..|...|.+++|+  +++|
T Consensus        10 ~~~~~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l   89 (369)
T 3zwl_B           10 HSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC   89 (369)
T ss_dssp             ---CCCCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccCCcceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEE
Confidence            3334334444444555679999999999999755  999999999999999764  466788999999999998  7899


Q ss_pred             EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325           96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD  175 (368)
Q Consensus        96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  175 (368)
                      ++++.||.|++||+.+++.....                                 .+...|.+++|+|+++++++++.+
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B           90 VTGSADYSIKLWDVSNGQCVATW---------------------------------KSPVPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEE---------------------------------ECSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEe---------------------------------ecCCCeEEEEEccCCCEEEEecCC
Confidence            99999999999999877532221                                 177889999999999999999999


Q ss_pred             -----CcEEEEEccCCe-----------EEEEeecCCC--ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          176 -----RTFKVWRISDSK-----------CLESVSAHDD--AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       176 -----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                           +.|++||+..+.           .+..+..|..  .+.+++|+|++ .+++++.||.|++||++...     ...
T Consensus       137 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~  211 (369)
T 3zwl_B          137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----EYV  211 (369)
T ss_dssp             BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----EEE
T ss_pred             ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----EeE
Confidence                 999999997653           3444555665  89999999999 99999999999999998632     356


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC----------
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK----------  306 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------  306 (368)
                      ..+..|...|.+++|+|++++|++++.||.|++||+++................+++|+++++++++.++          
T Consensus       212 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  291 (369)
T 3zwl_B          212 DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN  291 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred             EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecC
Confidence            6777889999999999999999999999999999999876664444444555577788999999999988          


Q ss_pred             ----eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 ----TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ----~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                          .+++||+...  +.+..+.+|...|++++|+|+++            .|++|+.||.|++|
T Consensus       292 ~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~------------~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          292 EGKFEARFYHKIFE--EEIGRVQGHFGPLNTVAISPQGT------------SYASGGEDGFIRLH  342 (369)
T ss_dssp             ---CEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred             CCcceeEEEecCCC--cchhheecccCcEEEEEECCCCC------------EEEEEcCCCeEEEE
Confidence                8999998876  67788899999999999999999            67777777777776

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-42  Score=318.36  Aligned_cols=280  Identities=23%  Similarity=0.358  Sum_probs=229.2

Q ss_pred             ceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           35 GLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      .....+.+|.+.|+++++++   ++|+||+.||+|++||+...       ...+.+|...|.+++|+  +++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            34457899999999999974   48999999999999997632       34678999999999998  78999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      +|++||+.++...                                ..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus       453 ~v~vwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          453 ELRLWDLAAGVST--------------------------------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEEEEECCCCcce--------------------------------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            9999999876432                                23455999999999999999999999999999999


Q ss_pred             ccCCeEEEEe---ecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325          183 ISDSKCLESV---SAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS  256 (368)
Q Consensus       183 ~~~~~~~~~~---~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  256 (368)
                      +.........   .+|...|.+++|+|++   .+++++.|+.|++||++..      .....+.+|...|.+++|+|+++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCC
Confidence            8655443332   3688899999999986   7999999999999999865      34567788999999999999999


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc---------
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH---------  327 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h---------  327 (368)
                      +|++|+.||.|++||+++++.............++++|++.+|++++ |+.|++||+.+.  ..+..+..+         
T Consensus       575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~  651 (694)
T 3dm0_A          575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK--SIVEDLKVDLKAEAEKAD  651 (694)
T ss_dssp             EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEECCCCC-------
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC--CChhhhcccccccccccc
Confidence            99999999999999999876654333333444567778888887765 566999999876  444433321         


Q ss_pred             ----------ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          328 ----------TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       328 ----------~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                ...+++++|+|++.            .|++|+.||+||+|
T Consensus       652 ~~~~~~~~~~~~~~~~l~~spdg~------------~l~sgs~Dg~i~iW  689 (694)
T 3dm0_A          652 NSGPAATKRKVIYCTSLNWSADGS------------TLFSGYTDGVIRVW  689 (694)
T ss_dssp             ---------CCCCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred             ccccccCCceeEEeeeEEEcCCCC------------EEEEEcCCCeEEEE
Confidence                      12378999999999            78899999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-42  Score=297.93  Aligned_cols=294  Identities=15%  Similarity=0.159  Sum_probs=237.0

Q ss_pred             eeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe------C---CEEEEE
Q 047325           36 LIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS------G---EKIFTG   98 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~------~---~~l~s~   98 (368)
                      ....+.+|.+.|++++|++++|++|+.||.|++||+..        ....+..|...|.+++|+      +   ++|+++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            45678899999999999999999999999999999864        356678999999999997      4   689999


Q ss_pred             eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec-----CCCEeEEEEc----CCCCE-
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH-----SDAVSCMSLD----QDCGL-  168 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-  168 (368)
                      +.||.|++||+.+++.....                           ....+..|     ...|.+++|+    |++++ 
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  140 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKV---------------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR  140 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCE---------------------------EEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred             cCCCCEEEEEccCCcccccc---------------------------cceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence            99999999999877631100                           01122235     5899999999    99999 


Q ss_pred             EEEEeCCCcEEEEEccC------CeEEE-----Eee-------cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC
Q 047325          169 LYTASWDRTFKVWRISD------SKCLE-----SVS-------AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       169 l~~~~~d~~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      |++++.||.|++||+.+      ++.+.     .+.       .|...|.+++|+|++.+++++.|+.|++||++..   
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  217 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL---  217 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT---
T ss_pred             EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC---
Confidence            99999999999999998      66655     664       4888999999999888889999999999999865   


Q ss_pred             cccccceeecc---c---cccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeec-------------cceE
Q 047325          231 TKHSLAQTLLK---Q---ECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKG-------------HKLA  288 (368)
Q Consensus       231 ~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~  288 (368)
                         .....+..   |   ...|.+++|+|++++|++++.|   |.|++||+++.... ..+..             |...
T Consensus       218 ---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          218 ---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             ---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSC
T ss_pred             ---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCc
Confidence               34555666   7   8899999999999999999999   99999999987554 44555             7777


Q ss_pred             EEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee------cc---------------ccCeeEEEEecCCeeeec
Q 047325          289 VLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT------GH---------------TGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       289 ~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~~~~~~  345 (368)
                      +.+  ++|++++|++++.||.|++||+...  +.+..+.      +|               ..+|++++|+|++..++.
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence            655  4567999999999999999999876  6777787      77               999999999999843333


Q ss_pred             CCcceEEEEEeeCCcccccccC
Q 047325          346 TSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       346 ~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++....  .|++|+.||.|++|
T Consensus       372 ~~~~~~--~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          372 GADLNE--SLCCVCLDRSIRWF  391 (397)
T ss_dssp             TCTTSC--EEEEEETTTEEEEE
T ss_pred             cccccc--eEEEecCCCcEEEE
Confidence            322222  57788888888887

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-42  Score=300.69  Aligned_cols=285  Identities=15%  Similarity=0.130  Sum_probs=216.9

Q ss_pred             CCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCC
Q 047325           33 QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDG  102 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg  102 (368)
                      ...+.....+|...|+||+|+|   ++||+|+.||+|+|||+...    ...+.+|.+.|++|+|+   +++|++|+.||
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            3445566778999999999985   38999999999999998632    34567899999999996   67999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      +|++||++++........                              ..+...+.+++|+|++++|++|+.||.|++||
T Consensus       188 ~v~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd  237 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASS------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLN  237 (435)
T ss_dssp             CEEEEETTSCEEEEEECC------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred             EEEEeeccCCceeEEecc------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence            999999976532111110                              01445678999999999999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      ++ ++.+..+.+|...|.+++|+|++  ++++++.|+.|++||++.....   .......+|...|.+++|+|++++|++
T Consensus       238 ~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~s  313 (435)
T 4e54_B          238 MD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLLT  313 (435)
T ss_dssp             SS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred             cC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCCeeEE
Confidence            86 56677888999999999999987  7889999999999999875331   122334578899999999999999999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccce--------EEEEEEeCCCEEEEee------------CCCeEEEEecCCCceee
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKL--------AVLCLAAAGKLVFSGS------------ADKTICVWRRDGAIHTC  320 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~  320 (368)
                      ++.||.|++||+++...... ...|..        ....+++++.++++++            .++.|++||..++  +.
T Consensus       314 ~~~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--~~  390 (435)
T 4e54_B          314 TDQKSEIRVYSASQWDCPLG-LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG--KM  390 (435)
T ss_dssp             EESSSCEEEEESSSSSSEEE-ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC--CE
T ss_pred             EcCCCEEEEEECCCCccceE-EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC--cE
Confidence            99999999999987654422 222211        0123344444444442            3467999998776  45


Q ss_pred             eEee-eccccCeeEE-EEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          321 LSVL-TGHTGPVKCL-AVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       321 ~~~~-~~h~~~v~~l-~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +..+ .+|...|.++ +|+|+|.            +|++|+ |++|++|
T Consensus       391 ~~~l~~~~~~~v~s~~~fspdg~------------~lasg~-d~~i~iW  426 (435)
T 4e54_B          391 MCQLYDPESSGISSLNEFNPMGD------------TLASAM-GYHILIW  426 (435)
T ss_dssp             EEEECCSSCCCCCCEEEECTTSS------------CEEEEC-SSEEEEC
T ss_pred             EEEEeCCCCCcEEEEEEECCCCC------------EEEEEc-CCcEEEE
Confidence            5554 4688889988 6999999            455554 5566666

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-41  Score=290.87  Aligned_cols=286  Identities=14%  Similarity=0.129  Sum_probs=229.1

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc--eecc--cCCCCCeeEEEEe---CCEEEEEe
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE--FCGF--KASSGLVKAIVIS---GEKIFTGH   99 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~--~~~~--~~~~~~v~~~~~~---~~~l~s~~   99 (368)
                      .+....+...+.+|.+.|++++|++   ++|++|+.||.|++||+...  ...+  .+|...|.+++|+   +++|++++
T Consensus        59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            3466778889999999999999985   48999999999999998743  3333  4699999999997   36999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .||.|++||+.+........                              ..+|...|.+++|+|++++|++++.|+.|+
T Consensus       139 ~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  188 (383)
T 3ei3_B          139 IRGATTLRDFSGSVIQVFAK------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLL  188 (383)
T ss_dssp             TTTEEEEEETTSCEEEEEEC------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCceEEEec------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence            99999999998532111100                              012568899999999999999999999999


Q ss_pred             EEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCC
Q 047325          180 VWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRS  256 (368)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  256 (368)
                      +||+ +++++..+..|...|.+++|+|++  ++++++.|+.|++||++.....  ......+ .|...|.+++|+| +++
T Consensus       189 i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          189 LLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDST  264 (383)
T ss_dssp             EEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred             EEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCC
Confidence            9999 678889999999999999999998  7999999999999999874321  1223333 6889999999999 999


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeeccc-------------------eEEEEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHK-------------------LAVLCLAAAGKLVFSGSADKTICVWRRDGAI  317 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  317 (368)
                      +|++++.|+.|++||+++...... +..|.                   ....++++++++  +|+.||.|++||+.++ 
T Consensus       265 ~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-  340 (383)
T 3ei3_B          265 KLLTTDQRNEIRVYSSYDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-  340 (383)
T ss_dssp             EEEEEESSSEEEEEETTBTTSCSE-EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC-
T ss_pred             EEEEEcCCCcEEEEECCCCccccc-cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC-
Confidence            999999999999999987665432 22221                   112445567776  8889999999999876 


Q ss_pred             eeeeEeeec--cccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          318 HTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       318 ~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                       +.+..+.+  |...+..++|+|++.            .|++|+ |+.|++|
T Consensus       341 -~~~~~l~~~~~~~~~~~~~~s~~g~------------~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          341 -GLVHQLRDPNAAGIISLNKFSPTGD------------VLASGM-GFNILIW  378 (383)
T ss_dssp             -CEEEEECBTTBCSCCCEEEECTTSS------------EEEEEE-TTEEEEE
T ss_pred             -ceeeeecCCCCCceEEEEEEecCcc------------EEEEec-CCcEEEE
Confidence             56677766  567788889999999            677775 7888887

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6e-41  Score=302.68  Aligned_cols=277  Identities=27%  Similarity=0.439  Sum_probs=237.3

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ..+.+..+.+|...|.+++|+++  .|++++.|+.|++||... ....+.+|...|.+++|+  +.+|++++.||.|++|
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  330 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45667788999999999999865  999999999999999764 455678999999999998  7799999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |......                                 ..+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus       331 ~~~~~~~---------------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~  376 (577)
T 2ymu_A          331 NRNGQHL---------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ  376 (577)
T ss_dssp             ETTSCEE---------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred             eCCCCee---------------------------------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence            9764421                                 122348899999999999999999999999999995 678


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .+..+.+|...|.+++|+|++ +|++++.|+.|++||...       .....+..|...|.+++|+|++++|++++.|+.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~  449 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT  449 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence            888999999999999999999 999999999999999643       245677889999999999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          267 VNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      |++||.... . ...+.+|...+.  +++|++++|++++.|+.|++||...   +.+..+.+|..+|++++|+|+++   
T Consensus       450 v~~w~~~~~-~-~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~~v~~l~~s~dg~---  521 (577)
T 2ymu_A          450 VKLWNRNGQ-L-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQ---  521 (577)
T ss_dssp             EEEEETTSC-E-EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSS---
T ss_pred             EEEEECCCC-E-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCCCEEEEEEcCCCC---
Confidence            999997543 2 245667777774  5567899999999999999999643   67788999999999999999999   


Q ss_pred             cCCcceEEEEEeeCCcccccccC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                               +|++++.|+.|++|
T Consensus       522 ---------~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          522 ---------TIASASDDKTVKLW  535 (577)
T ss_dssp             ---------CEEEEETTSEEEEE
T ss_pred             ---------EEEEEECcCEEEEE
Confidence                     56677777777776

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-40  Score=279.75  Aligned_cols=278  Identities=17%  Similarity=0.293  Sum_probs=230.3

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----eeccc--CCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFK--ASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      .......+|.+.|.+++|+++  +|++++ ||.|++||+...     ...+.  .|...|.+++|+  +++|++++.||.
T Consensus        42 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           42 ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            333445589999999999865  888888 999999998642     22222  789999999998  779999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      |++||+.+++...                              ...+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus       121 i~~~d~~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A          121 LSIWDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EEEEECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEECCCCCcce------------------------------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            9999998765211                              1123348889999999999999999999999999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      ++++.+..+..|...+.+++|+|++ .+++++.|+.|++||++...      ... ...+...+.+++|+|++++|++++
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~-~~~~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------QLQ-QHDFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EEE-EEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc------eEe-eecCCCceEEEEECCCCCEEEEEc
Confidence            9999999999999999999999999 99999999999999998652      222 234677899999999999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .++.|++||+++....  ....|...+.  ++++++++|++++.||.|++||+...  +.+.. ..|..+|++++|+|++
T Consensus       244 ~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQ-SKESSSVLSCDISVDD  318 (337)
T ss_dssp             TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEE-EECSSCEEEEEECTTS
T ss_pred             CCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--eEEEE-ecCCCcEEEEEECCCC
Confidence            9999999999986543  4556666664  45567999999999999999999876  33333 4588999999999999


Q ss_pred             eeeecCCcceEEEEEeeCCcccccccC
Q 047325          341 DSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .            .|++++.||.|++|
T Consensus       319 ~------------~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          319 K------------YIVTGSGDKKATVY  333 (337)
T ss_dssp             C------------EEEEEETTSCEEEE
T ss_pred             C------------EEEEecCCCeEEEE
Confidence            9            67888888888887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-40  Score=289.52  Aligned_cols=273  Identities=22%  Similarity=0.441  Sum_probs=205.6

Q ss_pred             CCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeec
Q 047325           33 QNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~  110 (368)
                      .++.+..+.+|.+.|.+++++++++++|+.||+|++||+.+  ....+.+|...|.++.++++.+++|+.||.|++||+.
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred             CCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence            34444555555555555555555555555555555555442  2334445555555555555555555555555555554


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE  190 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (368)
                      +++.                                ...+.+|...|.++.+  +++++++++.||.|++||+++++++.
T Consensus       228 ~~~~--------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          228 TGQC--------------------------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH  273 (445)
T ss_dssp             SCCE--------------------------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             CCcE--------------------------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            4332                                2344569999999999  67899999999999999999999999


Q ss_pred             EeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325          191 SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       191 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  270 (368)
                      .+.+|...|.++.+ ....+++++.|+.|++||++...      ....+..|...+.++.++  ++++++|+.||.|++|
T Consensus       274 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw  344 (445)
T 2ovr_B          274 TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW  344 (445)
T ss_dssp             EECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             EecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence            99999999999999 23399999999999999998763      456677888889888874  6799999999999999


Q ss_pred             eCCCccccceeeec---cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-----eccccCeeEEEEecCCee
Q 047325          271 EREKQLSHGGVLKG---HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-----TGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       271 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~  342 (368)
                      |++++... ..+..   |...+.++.+++++|++|+.||.|++||+.++  +.+..+     .+|.+.|++++|+|++. 
T Consensus       345 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  420 (445)
T 2ovr_B          345 DIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRASNTKL-  420 (445)
T ss_dssp             ETTTCCEE-EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEEEECSSEE-
T ss_pred             ECCCCcEE-EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC--ceeeeeeccccCCCCceEEEEEecCCEE-
Confidence            99887655 34443   88889999999999999999999999999876  455555     46888999999999999 


Q ss_pred             eecCCcceEEEEEeeCCcccc
Q 047325          343 SSSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       343 ~~~~~~~~~~w~l~sg~~D~~  363 (368)
                                 .+++|+.||+
T Consensus       421 -----------~la~~~~dg~  430 (445)
T 2ovr_B          421 -----------VCAVGSRNGT  430 (445)
T ss_dssp             -----------EEEEECSSSS
T ss_pred             -----------EEEEcccCCC
Confidence                       5677777776

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.7e-41  Score=280.24  Aligned_cols=239  Identities=19%  Similarity=0.270  Sum_probs=210.6

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      +...+.+|...|.+++++++  ++++|+.|++|++||+.+  .+..+..|...+.+++|+  +++|++|+.||.|++|++
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            45578999999999999865  999999999999999875  355677888899999998  789999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      ++++...                                .+..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus       152 ~~~~~~~--------------------------------~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~  199 (321)
T 3ow8_A          152 ESGKKEY--------------------------------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL  199 (321)
T ss_dssp             TTCSEEE--------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCceeE--------------------------------EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            8775322                                22337788999999999999999999999999999999999


Q ss_pred             EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          190 ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       190 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ..+.+|..+|.+++|+|++ +|++++.|+.|++||++..      .....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus       200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            9999999999999999999 9999999999999999865      24567788999999999999999999999999999


Q ss_pred             EEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEec
Q 047325          269 FWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      +||++++... ..+.+|...+.++  ++++++|++++.||.|++||.
T Consensus       274 iwd~~~~~~~-~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          274 VWDVGTRTCV-HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEeCCCCEEE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999987655 5566788777555  457899999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-41  Score=294.23  Aligned_cols=294  Identities=18%  Similarity=0.259  Sum_probs=227.1

Q ss_pred             CCCceeeec-cCcCCcEEEEEecC-C--EEEEccCCCcEEEEcCCc---ce---eccc-CCCCCeeEEEEe--CCEEEEE
Q 047325           32 PQNGLIGSL-VREEGHIYSLAASK-D--LLYTGSDSKNIRVWKNLK---EF---CGFK-ASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        32 ~~~~~~~~~-~~h~~~i~~~~~~~-~--~l~s~~~dg~i~iw~~~~---~~---~~~~-~~~~~v~~~~~~--~~~l~s~   98 (368)
                      +.++++..+ .+|.+.|++++|++ +  +|++|+.||+|++||+.+   ..   .... .|...|.+++|+  +++|++|
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            556778888 89999999999987 4  999999999999999754   21   1222 589999999998  7899999


Q ss_pred             eCCCeEEEEeec---CCCccccccCCccccceeeeeccCCCCceeEecccceeeeee--cCCCEeEEE--EcCCCCEEEE
Q 047325           99 HQDGKIRVWKIS---PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR--HSDAVSCMS--LDQDCGLLYT  171 (368)
Q Consensus        99 ~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~l~~  171 (368)
                      +.||.|++||++   .++........                      ......+..  +...+.++.  +++++.+|++
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCE----------------------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEE----------------------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccc----------------------eeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            999999999995   33221111000                      000000111  456778887  5688999999


Q ss_pred             EeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEE
Q 047325          172 ASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVT  247 (368)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~  247 (368)
                      ++.|+.|++||+++++++..+..  |...|.+++|+|++ +|++|+.||.|++||++..      .....+. .+...|.
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSFGDHAPIT  261 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBCTTCEEEE
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEecCCCCceE
Confidence            99999999999999999999988  88999999999999 9999999999999999864      2344443 6778999


Q ss_pred             EEEEcC----CCCEEEEecCCCcEEEEeCCCccccceee-----------------------ec--cceEE--EEEEeCC
Q 047325          248 ALVVSS----SRSIVYCGSSDGLVNFWEREKQLSHGGVL-----------------------KG--HKLAV--LCLAAAG  296 (368)
Q Consensus       248 ~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------~~--~~~~~--~~~~~~~  296 (368)
                      +++++|    ++.+|++|+.||.|++||++++.......                       .+  |...+  ++++ ++
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~  340 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND  340 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence            996654    67799999999999999998765432221                       11  33344  4555 67


Q ss_pred             CEEEEeeCCCeEEEEecCCCceeeeEeeec-------------------------------------cccCeeEEEEecC
Q 047325          297 KLVFSGSADKTICVWRRDGAIHTCLSVLTG-------------------------------------HTGPVKCLAVEED  339 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~  339 (368)
                      ++|++|+.||.|++||+.++  +....+.+                                     |...|++++|+++
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~  418 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV  418 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred             eEEEecCCCCeEEEEECCCc--ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence            89999999999999999876  33333333                                     8899999999998


Q ss_pred             --CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          340 --RDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       340 --~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                        +.            +|++|+.||.|++|.
T Consensus       419 ~~~~------------~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          419 DETP------------LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SSSE------------EEEEEETTSCEEEEC
T ss_pred             CCce------------EEEEEcCCceEEEeC
Confidence              66            799999999999994

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-41  Score=290.17  Aligned_cols=240  Identities=24%  Similarity=0.390  Sum_probs=211.2

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|..+|++++|+  +.+|++|+.||+|++||+.+++...                                .+.+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------------------~l~~  148 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------------------TLKG  148 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------------------EECC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------------------------EEec
Confidence            45678999999999998  7899999999999999998876322                                3345


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |.+.|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++||++.+    
T Consensus       149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----  224 (410)
T 1vyh_C          149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----  224 (410)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence            99999999999999999999999999999999999999999999999999999999 9999999999999999876    


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--C--------------
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--A--------------  295 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~--------------  295 (368)
                        .+...+.+|...|.++.++|++++|++|+.|+.|++||+++.... ..+.+|...+.++.+  +              
T Consensus       225 --~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  301 (410)
T 1vyh_C          225 --YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSET  301 (410)
T ss_dssp             --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred             --cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eEecCCCceEEEEEEcCcccccchhhhccccc
Confidence              346677889999999999999999999999999999999886554 456678877766654  3              


Q ss_pred             ------CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          296 ------GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       296 ------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                            +.+|++|+.|+.|++||+.++  .++..+.+|...|++++|+|++.            .|++|+.|++|++|
T Consensus       302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~------------~l~s~s~D~~i~vw  365 (410)
T 1vyh_C          302 KKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK------------FILSCADDKTLRVW  365 (410)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------CEEEEETTTEEEEE
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCC--ceEEEEECCCCcEEEEEEcCCCC------------EEEEEeCCCeEEEE
Confidence                  568999999999999999876  67888999999999999999999            56677777777776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.2e-41  Score=285.10  Aligned_cols=285  Identities=15%  Similarity=0.140  Sum_probs=229.2

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~  111 (368)
                      +..|.++|++++|+++  +|++|+.|+.|++||+..    ....+..|...|.+++|+  +++|++++.||.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            4458999999999865  999999999999999875    456788999999999998  88999999999999999977


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC---  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---  188 (368)
                      ++.....                              .+.+|...|.+++|+|++++|++++.|+.|++||+..++.   
T Consensus        84 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  133 (372)
T 1k8k_C           84 RTWKPTL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  133 (372)
T ss_dssp             TEEEEEE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             CeeeeeE------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence            6522111                              1123888999999999999999999999999999988762   


Q ss_pred             E-EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC------------cccccceeeccccccEEEEEEcCC
Q 047325          189 L-ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG------------TKHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       189 ~-~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                      . .....|...|.+++|+|++ ++++++.||.|++||++.....            ........+..|...+.+++|+|+
T Consensus       134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  213 (372)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence            2 3335688999999999999 9999999999999997532110            112345566688899999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC--Cceeee---------
Q 047325          255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG--AIHTCL---------  321 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~---------  321 (368)
                      +++|++++.||.|++||++++... ..+..|...+  +++++++.+|++| .|+.|++|++..  +....+         
T Consensus       214 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~  291 (372)
T 1k8k_C          214 GSRVAWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS  291 (372)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred             CCEEEEEeCCCEEEEEECCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence            999999999999999999987655 4556666555  5667788888887 899999999977  321111         


Q ss_pred             ---------------------------Eee-eccccCeeEEEEe-cCC---eeeecCCcceEEEEEeeCCcccccccCC
Q 047325          322 ---------------------------SVL-TGHTGPVKCLAVE-EDR---DSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       322 ---------------------------~~~-~~h~~~v~~l~~~-~~~---~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                                                 ..+ .+|..+|++++|. +++   .            .|+||+.||.|++|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~------------~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS------------QFCTTGMDGGMSIWD  358 (372)
T ss_dssp             -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS------------EEEEEETTSEEEEEE
T ss_pred             hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee------------eEEEecCCCceEEEE
Confidence                                       223 4899999999966 665   7            688899999999883

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-41  Score=291.83  Aligned_cols=287  Identities=14%  Similarity=0.176  Sum_probs=233.6

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEee
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~  109 (368)
                      ..|.+.|.+++|+++  +|++|+.||.|++||+..      ....+..|...|.+++|+   +++|++++.||.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            368999999999755  999999999999999875      466788999999999998   579999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      .+.+.........                       ....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++.
T Consensus       144 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          144 NKCTESPSNYTPL-----------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             TTTSSCTTTCCCB-----------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             CCCcccccccccc-----------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            8876211000000                       00011238899999999998 78999999999999999999999


Q ss_pred             EEEeecC------CCceEEEEeCCCC--eEEEEcCCC---eEEEEEcCCCCCCcccccceeec-cccccEEEEEEcC-CC
Q 047325          189 LESVSAH------DDAVNSVVSSSEG--LIFTGSADG---TVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSS-SR  255 (368)
Q Consensus       189 ~~~~~~~------~~~v~~~~~~~~~--~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~  255 (368)
                      +..+..+      ...|.+++|+|++  ++++++.|+   .|++||++....     +...+. .|...|.+++|+| ++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCS
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCC
Confidence            9988876      7889999999997  899999998   999999987532     345555 7899999999999 99


Q ss_pred             CEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCC-CEEEEeeCCCeEEEEecCCCceeeeE----------
Q 047325          256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAG-KLVFSGSADKTICVWRRDGAIHTCLS----------  322 (368)
Q Consensus       256 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~----------  322 (368)
                      ++|++++.||.|++||+++++.. ..+..|...+  ++++|++ .+|++++.||.|++|++.........          
T Consensus       276 ~~l~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  354 (416)
T 2pm9_A          276 HLLLSSGRDNTVLLWNPESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES  354 (416)
T ss_dssp             SCEEEEESSSEEEEECSSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred             CeEEEEeCCCCEEEeeCCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence            99999999999999999987654 5566777666  5566777 89999999999999999765321110          


Q ss_pred             -----------------------eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          323 -----------------------VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       323 -----------------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                                             ....|..++++++|+|+|+            +|++|+.|++|++|.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~------------~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK------------LVQITPDGKGVSITN  411 (416)
T ss_dssp             ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE------------EECBCTTSSCBCCBC
T ss_pred             cccccccccccccccccccccccCCccccCCccceEEeeCCe------------EEEEeCCCCeEEEEE
Confidence                                   0111677889999999999            788999999999994

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6e-41  Score=284.61  Aligned_cols=281  Identities=15%  Similarity=0.197  Sum_probs=223.4

Q ss_pred             eeeccCcCCcEEEEEecCC---EEEEccC---CCcEEEEcCCccee---cccCCCCCeeEEEEe-----CCEEEEEeCCC
Q 047325           37 IGSLVREEGHIYSLAASKD---LLYTGSD---SKNIRVWKNLKEFC---GFKASSGLVKAIVIS-----GEKIFTGHQDG  102 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~---~l~s~~~---dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~-----~~~l~s~~~dg  102 (368)
                      ...+.+|.+.|.+++|+++   ++++|+.   ||.|++||+.+...   ....|...|.+++|+     +++|++|+.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            3456789999999999864   6667776   99999999875422   233789999999997     27899999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE------cCCCCEEEEEeCCC
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL------DQDCGLLYTASWDR  176 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~  176 (368)
                      .|++||+.+++..                               ...+.+|...|.++.|      +|++++|++++.|+
T Consensus        91 ~i~iwd~~~~~~~-------------------------------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~  139 (357)
T 3i2n_A           91 NLHIWNLEAPEMP-------------------------------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG  139 (357)
T ss_dssp             CEEEECTTSCSSC-------------------------------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred             eEEEEeCCCCCcc-------------------------------EEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence            9999999877511                               1123349999999955      67899999999999


Q ss_pred             cEEEEEccCCe-EEEEeecCCC----ceEEEE----eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          177 TFKVWRISDSK-CLESVSAHDD----AVNSVV----SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       177 ~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      .|++||+++++ ++..+..|..    .+.+++    |+|++ .+++++.||.|++||++...       ......+...+
T Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~v  212 (357)
T 3i2n_A          140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------LRWETNIKNGV  212 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------EEEEEECSSCE
T ss_pred             eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------eeeecCCCCce
Confidence            99999999887 6777766554    788888    77888 99999999999999998652       23445678899


Q ss_pred             EEEEEcC---CCCEEEEecCCCcEEEEeCCCcccccee----eeccceEEEE--EEeCCC-EEEEeeCCCeEEEEecCCC
Q 047325          247 TALVVSS---SRSIVYCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLC--LAAAGK-LVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       247 ~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~--~~~~~~-~l~~~~~dg~i~iw~~~~~  316 (368)
                      .+++|+|   ++++|++++.||.|++||+++.......    ..+|...+.+  ++|+++ +|++|+.||.|++||++..
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            9999999   9999999999999999999876554322    2367777754  556777 8999999999999998753


Q ss_pred             c-----------------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEe-eCCcccccccC
Q 047325          317 I-----------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVY-SGSLDKSDDDV  367 (368)
Q Consensus       317 ~-----------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~-sg~~D~~v~i~  367 (368)
                      .                 ...+..+.+|..+|++++|+|++..            |+ +|+.|+.|++|
T Consensus       293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG------------LCVCSSFDQTVRVL  349 (357)
T ss_dssp             SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT------------EEEEEETTSEEEEE
T ss_pred             cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe------------EEEEecCCCcEEEE
Confidence            2                 2467788899999999999999994            44 67777777776

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.8e-40  Score=286.32  Aligned_cols=259  Identities=26%  Similarity=0.433  Sum_probs=225.4

Q ss_pred             ceeeeccCcCCc-EEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325           35 GLIGSLVREEGH-IYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        35 ~~~~~~~~h~~~-i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~  111 (368)
                      .....+.+|.+. +.++.+++++|++|+.||+|++||+.+  ....+.+|...|.++.++++++++|+.||+|++||+.+
T Consensus       109 ~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             ceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence            345678899987 589999999999999999999999864  45678899999999999999999999999999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      ++...                                .+.+|...|.++.++  ++.+++|+.||.|++||+.+++.+..
T Consensus       189 ~~~~~--------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~  234 (445)
T 2ovr_B          189 GECIH--------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV  234 (445)
T ss_dssp             TEEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred             CcEEE--------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            75322                                233489999999996  46899999999999999999999999


Q ss_pred             eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      +.+|...|.++.+ ....+++++.||.|++||++..      .....+..|...+.+++|  +++++++++.||.|++||
T Consensus       235 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d  305 (445)
T 2ovr_B          235 LMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD  305 (445)
T ss_dssp             EECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred             EcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence            9999999999999 2339999999999999999865      356677789999999999  788999999999999999


Q ss_pred             CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec---cccCeeEEEEecC
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG---HTGPVKCLAVEED  339 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~l~~~~~  339 (368)
                      ++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+.  +.+..+..   |..+|++++|+++
T Consensus       306 ~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          306 VETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKN  373 (445)
T ss_dssp             TTTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEECSS
T ss_pred             CCCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEECCC
Confidence            9987655 5667888999999999999999999999999999776  56667765   8899999999753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-40  Score=289.57  Aligned_cols=271  Identities=27%  Similarity=0.420  Sum_probs=230.2

Q ss_pred             eccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccc
Q 047325           39 SLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      ...+|...|.++++++++|++|+.||+|++||..+  ....+.+|...|.++++++++|++|+.||.|++||+.+++...
T Consensus       128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            34567788999999999999999999999999874  4567889999999999999999999999999999998876422


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE---EEee
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL---ESVS  193 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~  193 (368)
                                                      .+.+|...|.+++|++  ..+++|+.||.|++||+.+++..   ..+.
T Consensus       208 --------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  253 (435)
T 1p22_A          208 --------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV  253 (435)
T ss_dssp             --------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred             --------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence                                            2234889999999974  59999999999999999887655   6778


Q ss_pred             cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          194 AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       194 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      +|...|.++.+ ....+++|+.||.|++||++..      .....+..|...+.++.+  +++++++|+.||.|++||++
T Consensus       254 ~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          254 GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence            89999999999 2339999999999999999876      346677789999999999  46899999999999999999


Q ss_pred             CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCce-------eeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIH-------TCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      ++... ..+.+|...+.++.+++.+|++|+.||.|++||+.....       .++..+.+|.++|++++|  ++.     
T Consensus       325 ~~~~~-~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-----  396 (435)
T 1p22_A          325 CGACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-----  396 (435)
T ss_dssp             TCCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred             CCCEE-EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence            87655 567789999999999999999999999999999865421       167788899999999999  555     


Q ss_pred             CcceEEEEEeeCCcccccccC
Q 047325          347 SSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       347 ~~~~~~w~l~sg~~D~~v~i~  367 (368)
                             .|++|+.||+|++|
T Consensus       397 -------~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          397 -------QIVSSSHDDTILIW  410 (435)
T ss_dssp             -------CEEECCSSSEEEEE
T ss_pred             -------EEEEEeCCCEEEEE
Confidence                   46677777777776

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=277.63  Aligned_cols=237  Identities=16%  Similarity=0.192  Sum_probs=197.9

Q ss_pred             ccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325           40 LVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~  110 (368)
                      ...|...|.+++|+++ .|++|+.||+|+|||+.+..      ....+|...|.+++|+  +++|++|+.||+|++||++
T Consensus        78 ~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            3456788999999877 89999999999999986431      2345899999999998  8899999999999999998


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      +++..                                ..+.+|...|++++|+|++. +|++++.|+.|++||++++++.
T Consensus       158 ~~~~~--------------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  205 (344)
T 4gqb_B          158 QQVVL--------------------------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA  205 (344)
T ss_dssp             TTEEE--------------------------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE
T ss_pred             CCcEE--------------------------------EEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee
Confidence            77532                                23445999999999999874 7899999999999999999988


Q ss_pred             EEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEEecCC
Q 047325          190 ESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSD  264 (368)
Q Consensus       190 ~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  264 (368)
                      ..+.  .+...+.+++|+|++  ++++|+.||.|++||++..      .++..+.+|...|++++|+|++ ++|++|+.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence            8774  355678999999865  7889999999999999876      3567788999999999999987 589999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEE--eCCC-EEEEeeCCCeEEEEecCCC
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGK-LVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~  316 (368)
                      +.|++||+++++..  ...+|...|.+++  |+++ +|++|+.||+|++|++.+.
T Consensus       280 ~~i~vwd~~~~~~~--~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          280 CSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             SCEEEECTTCCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CeEEEEECCCCcEE--EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            99999999987654  4678988886665  5665 6789999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-39  Score=286.76  Aligned_cols=279  Identities=23%  Similarity=0.327  Sum_probs=232.0

Q ss_pred             eeeeccCcCCc-EEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecC
Q 047325           36 LIGSLVREEGH-IYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        36 ~~~~~~~h~~~-i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ....+.+|.+. +.++.+++++|++|+.||+|++||+.+  .+..+.+|.+.|.+++|+ +.+|++|+.||+|++||+++
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence            45678999988 588999999999999999999999874  456778999999999998 55999999999999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc--CCCCEEEEEeCCCcEEEEEccCCeE-
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD--QDCGLLYTASWDRTFKVWRISDSKC-  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~-  188 (368)
                      ++...                                .+.+|...|.+++|+  ++++++++++.|+.|++||+++++. 
T Consensus       193 ~~~~~--------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          193 GCCTH--------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             TEEEE--------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             CcEEE--------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            75322                                233499999999998  5778999999999999999987652 


Q ss_pred             ----------------------EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325          189 ----------------------LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA  245 (368)
Q Consensus       189 ----------------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  245 (368)
                                            +..+.+|...+.++.  +++ .+++++.|+.|++||++..      .....+.+|...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~  312 (464)
T 3v7d_B          241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQM------KCLYILSGHTDR  312 (464)
T ss_dssp             ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTT------EEEEEECCCSSC
T ss_pred             ccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCC
Confidence                                  556778888888874  455 9999999999999999865      356677889999


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      |.+++|+|+++++++|+.||.|++||+++++.. ..+.+|...+.++.+++++|++|+.||.|++||+.+.  ...... 
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~-  388 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGELM-YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY--SRKFSY-  388 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEE-
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC--ceeeee-
Confidence            999999999999999999999999999987655 5677899999999999999999999999999999876  333333 


Q ss_pred             ccccCeeEEEEecCCeeeecCC-cceEEEEEeeC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTS-SCAQRWIVYSG  358 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l~sg  358 (368)
                      .|...+..++|++++.++++++ +.+++|.+.+|
T Consensus       389 ~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          389 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            3677888999999999655442 34555554443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.6e-40  Score=275.97  Aligned_cols=243  Identities=21%  Similarity=0.359  Sum_probs=208.7

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe-CCEEEEEeCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS-GEKIFTGHQD  101 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~-~~~l~s~~~d  101 (368)
                      ......+..+..|...|.+++|+++  +|++|+.|+.|++|++...      ...+.+|.+.|.++.|. ++.+++++.|
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d  163 (340)
T 1got_B           84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             TTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETT
T ss_pred             CCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECC
Confidence            4556677788899999999999865  9999999999999998642      34577899999999998 7789999999


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ++|++||+++++...                                .+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       164 ~~i~~wd~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w  211 (340)
T 1got_B          164 TTCALWDIETGQQTT--------------------------------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             SCEEEEETTTTEEEE--------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEECCCCcEEE--------------------------------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            999999998765322                                234599999999999999999999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcCCCCEE
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l  258 (368)
                      |+++++++..+.+|...|.+++|+|++ .|++|+.|+.|++||++...      ....+  ..+...|.+++|+|++++|
T Consensus       212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------EEEEEccCCcccceEEEEECCCCCEE
Confidence            999999999999999999999999999 99999999999999998652      12222  2334579999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEe
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~  312 (368)
                      ++|+.||.|++||+.+.... ..+.+|...|.++.  |++.+|++|+.||.|++||
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccCcEe-eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999876554 56778988886554  6899999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-39  Score=269.75  Aligned_cols=265  Identities=20%  Similarity=0.331  Sum_probs=223.0

Q ss_pred             CCCceeeeccCcCCcEEEEEec-CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ...++...+.+|.+.|.+++|. +++|++|+.||.|++||+...  ...+..|...|.+++|+  +++|++++.||.|++
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            3457788899999999999983 459999999999999998753  55677899999999998  789999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      |++.......                             ....+.+|...|.++.|  +++++++++.|+.|++||  .+
T Consensus        86 ~~~~~~~~~~-----------------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~  132 (313)
T 3odt_A           86 VPLFATSGED-----------------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG  132 (313)
T ss_dssp             EETTCCTTSC-----------------------------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT
T ss_pred             EEeeecCCCC-----------------------------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC
Confidence            9997654211                             11223458999999999  567999999999999999  78


Q ss_pred             eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecC
Q 047325          187 KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      +.+..+..|...+.++.+.| ++ .+++++.|+.|++||...        ....+.. +...+.+++|+|++. +++++.
T Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred             cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence            88889999999999999987 55 999999999999999542        3444454 889999999999988 999999


Q ss_pred             CCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ||.|++||+++++.. ..+..|...+.++.+  ++ .|++++.||.|++||+.+.  +.+..+..|..+|++++|+|++.
T Consensus       204 dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          204 DGLIKLVDMHTGDVL-RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG--SLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             TSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC--CEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCeEEEEECCchhhh-hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC--ceeEEEeccCceEEEEEEccCCC
Confidence            999999999987655 566678877766654  56 6999999999999998876  67788889999999999999998


Q ss_pred             e
Q 047325          342 S  342 (368)
Q Consensus       342 ~  342 (368)
                      +
T Consensus       280 ~  280 (313)
T 3odt_A          280 I  280 (313)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-40  Score=282.02  Aligned_cols=283  Identities=14%  Similarity=0.178  Sum_probs=225.6

Q ss_pred             eccCcCCcEEEEEecC-----C-EEEEccCCCcEEEEcCCcc--eeccc-----CCCCCeeEEEEeC------CEEEEEe
Q 047325           39 SLVREEGHIYSLAASK-----D-LLYTGSDSKNIRVWKNLKE--FCGFK-----ASSGLVKAIVISG------EKIFTGH   99 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~-----~-~l~s~~~dg~i~iw~~~~~--~~~~~-----~~~~~v~~~~~~~------~~l~s~~   99 (368)
                      ...+|.++|++++|++     + .+++++.++.|++||....  +..+.     .|...|.+++|+.      .+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            3458999999999985     3 5667777789999998732  22332     3678899999982      3899999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTF  178 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i  178 (368)
                      .||.|++||+.+++...                                .+.+|...|.+++|+| ++++|++++.||.|
T Consensus        93 ~dg~i~v~d~~~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i  140 (366)
T 3k26_A           93 SRGIIRIINPITMQCIK--------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHAL  140 (366)
T ss_dssp             TTCEEEEECTTTCCEEE--------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             CCCEEEEEEchhceEee--------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            99999999998765322                                2344999999999999 89999999999999


Q ss_pred             EEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc---------------------
Q 047325          179 KVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH---------------------  233 (368)
Q Consensus       179 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---------------------  233 (368)
                      ++||+++++.+..+   ..|...|.+++|+|++ .|++++.||.|++||++........                     
T Consensus       141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            99999999999888   6899999999999999 9999999999999999864210000                     


Q ss_pred             -ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-------------ceeeeccceEE--EEEEeC--
Q 047325          234 -SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-------------GGVLKGHKLAV--LCLAAA--  295 (368)
Q Consensus       234 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~--~~~~~~--  295 (368)
                       ........|...|.+++|+  +++|++++.||.|++||+++....             ...+..|...+  ++++|+  
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  298 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW  298 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred             cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence             0011223388899999998  779999999999999998865431             23344454444  567788  


Q ss_pred             CCEEEEeeCCCeEEEEecCCCce--eeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          296 GKLVFSGSADKTICVWRRDGAIH--TCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       296 ~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +++|++|+.||.|++||+.....  .....+.+|  ..+|++++|+|+++            .|++|+.||.|++|
T Consensus       299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~s~~~dg~i~iw  362 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS------------ILIAVCDDASIWRW  362 (366)
T ss_dssp             SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred             CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC------------eEEEEeCCCEEEEE
Confidence            99999999999999999987532  244567777  78999999999999            78888899999888

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.2e-40  Score=277.25  Aligned_cols=281  Identities=12%  Similarity=0.108  Sum_probs=212.6

Q ss_pred             CCcEEEEEecCC--EEEEccCCC-------cEEEEcCCcc------------eecccCCCCCeeEEEEeCCEEEEEe---
Q 047325           44 EGHIYSLAASKD--LLYTGSDSK-------NIRVWKNLKE------------FCGFKASSGLVKAIVISGEKIFTGH---   99 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg-------~i~iw~~~~~------------~~~~~~~~~~v~~~~~~~~~l~s~~---   99 (368)
                      .-+|++++|+++  +|++|+.|.       .|++|++...            ...+..|...|.+++++++.+++|.   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            347999999866  888886543       5999986522            1246688899999999999888775   


Q ss_pred             --------CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325          100 --------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus       100 --------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                              .|+.+++|++............                       ........+...+.+++|+|||+++++
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la~  150 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAAI  150 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEEE
Confidence                    4677999988765432111000                       000011125567899999999999876


Q ss_pred             Ee--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          172 AS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       172 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      ++  .|++|++||+.+++++..+. |...|.+++|+|++ ++++++ ++.+.+|+...+..    ........|...+.+
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC----IARKTDFDKNWSLSK  224 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE----EEEECCCCTTEEEEE
T ss_pred             EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc----eeeeecCCCCCCEEE
Confidence            54  68999999999999998886 77889999999999 777776 45566776655422    122344568889999


Q ss_pred             EEEcCCCCEEEEecCCC----cEEEEeCCCcccc---ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325          249 LVVSSSRSIVYCGSSDG----LVNFWEREKQLSH---GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       249 ~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~---~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  319 (368)
                      ++|+|+++++++++.|+    .+++|++......   ...+.+|...|  ++++|++++|++|+.|++|+|||+.+.  +
T Consensus       225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~  302 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--S  302 (365)
T ss_dssp             EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--E
T ss_pred             EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--c
Confidence            99999999999999887    6888887754322   23455676666  456679999999999999999999876  6


Q ss_pred             eeEee-eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          320 CLSVL-TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       320 ~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++..+ .+|..+|++|+|+|||+            +|+|||.|++||||
T Consensus       303 ~~~~~~~gH~~~V~~v~fSpdg~------------~laS~S~D~tvrvw  339 (365)
T 4h5i_A          303 MSKIFKQAHSFAITEVTISPDST------------YVASVSAANTIHII  339 (365)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSC------------EEEEEETTSEEEEE
T ss_pred             EEEEecCcccCCEEEEEECCCCC------------EEEEEeCCCeEEEE
Confidence            66664 78999999999999999            78888888888888

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-41  Score=289.45  Aligned_cols=290  Identities=15%  Similarity=0.083  Sum_probs=216.4

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~  111 (368)
                      +..|.++|++++|+++  +|++|+.||.|++||+..    ....+.+|...|.+++|+  +++|++++.||.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999855  999999999999999874    355788999999999998  78999999999999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---E
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---C  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~  188 (368)
                      ++...                             ....+.+|...|.+++|+|++++|++++.|+.|++||+++++   .
T Consensus        87 ~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           87 DGTWK-----------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             --CCC-----------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred             CCcee-----------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence            65100                             011223489999999999999999999999999999999887   3


Q ss_pred             EEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc------------ccccceeeccccccEEEEEEcCC
Q 047325          189 LESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT------------KHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       189 ~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                      ...+.. |...|.+++|+|++ +|++++.|+.|++||++......            ...+...+ .|...|.+++|+|+
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS  216 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred             eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence            677777 99999999999999 99999999999999986432100            12233444 88899999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCcccc---ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeee--------
Q 047325          255 RSIVYCGSSDGLVNFWEREKQLSH---GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL--------  321 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------  321 (368)
                      +++|++++.||.|++||++++...   ...+.+|...+  ++++|++++|++|+.|+.+ +|+.........        
T Consensus       217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  295 (377)
T 3dwl_C          217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS  295 (377)
T ss_dssp             SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence            999999999999999999987652   35666777666  5567799999999877666 666542110000        


Q ss_pred             --------------------------Ee----------------eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCC
Q 047325          322 --------------------------SV----------------LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGS  359 (368)
Q Consensus       322 --------------------------~~----------------~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~  359 (368)
                                                ..                ...|.+.|+++++.+...        .....++|||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~--------~~~~~~~s~g  367 (377)
T 3dwl_C          296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP--------GNITAFTSSG  367 (377)
T ss_dssp             CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET--------TEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC--------CceEEEEeec
Confidence                                      00                113888999998765432        0122589999


Q ss_pred             cccccccCC
Q 047325          360 LDKSDDDVH  368 (368)
Q Consensus       360 ~D~~v~i~h  368 (368)
                      .||.|++|.
T Consensus       368 ~Dg~i~iWd  376 (377)
T 3dwl_C          368 TDGRVVLWT  376 (377)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCcEEEec
Confidence            999999994

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-39  Score=268.86  Aligned_cols=247  Identities=20%  Similarity=0.232  Sum_probs=200.5

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRV  106 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v  106 (368)
                      +..+.+|.+.|++++|+++  +||+|+.|++|+|||+..    .+..+.+|.++|.+++|+    +++|++|+.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            3457899999999999854  999999999999999853    356788999999999995    679999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~  184 (368)
                      ||+++++...                              ...+.+|...|.+++|+|+  +.+|++++.|+.|++||++
T Consensus        82 Wd~~~~~~~~------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             EEBSSSCBCC------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             EEcCCCceEE------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            9998653211                              1122348899999999997  8899999999999999998


Q ss_pred             CCe--EEEEeecCCCceEEEEeCCC-------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          185 DSK--CLESVSAHDDAVNSVVSSSE-------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       185 ~~~--~~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      ++.  ....+.+|...|.+++|+|+             + +|++|+.|+.|++||++....  .......+.+|...|.+
T Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred             CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEE
Confidence            763  24567789999999999996             3 899999999999999976431  11234567789999999


Q ss_pred             EEEcCCC---CEEEEecCCCcEEEEeCCCcccc--ceee--eccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          249 LVVSSSR---SIVYCGSSDGLVNFWEREKQLSH--GGVL--KGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       249 ~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~--~~~~--~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ++|+|++   ++|++++.|+.|++||++.....  ....  ..|...+  ++++|++++|++++.||.|++|+...
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            9999984   89999999999999998764311  1122  3455555  56677899999999999999998763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-39  Score=279.33  Aligned_cols=279  Identities=17%  Similarity=0.234  Sum_probs=224.8

Q ss_pred             eeeccCcCCc--EEEEEecCCEEEEccCCCcEEEEcCCcc--eeccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           37 IGSLVREEGH--IYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        37 ~~~~~~h~~~--i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      +....+|.+.  +.+++++++.+++++.||.|++||....  ...+. .|...|.+++|+  +++|++|+.||.|++||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            3344566655  5668888888889999999999998754  22333 388999999998  789999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCeE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSKC  188 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~  188 (368)
                      .+++...                                .+.+|...|.+++|+  +++|++++.||.|++||++ ....
T Consensus       164 ~~~~~~~--------------------------------~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          164 ESQTKLR--------------------------------TMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             TTCCEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             cCCeEEE--------------------------------EecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence            8765332                                223499999999994  5699999999999999998 5677


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEec--CC
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGS--SD  264 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d  264 (368)
                      +..+.+|...|.+++|+|++ .|++++.|+.|++||++..      .....+..|...|.+++|+|++. ++++++  .|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d  283 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD  283 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCC
Confidence            88899999999999999998 9999999999999999865      34556778899999999999764 566654  79


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE--eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS--GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      +.|++||++++..............++++++++++++  |+.||.|++|++..........+.+|...|++++|+|++.+
T Consensus       284 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (401)
T 4aez_A          284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI  363 (401)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence            9999999998766644433334444666778999998  55899999999988766667778899999999999999994


Q ss_pred             eecCCcceEEEEEeeCCcccccccC
Q 047325          343 SSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       343 ~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                  |++++.||.|++|
T Consensus       364 ------------l~s~~~dg~i~iw  376 (401)
T 4aez_A          364 ------------LSTAASDENLKFW  376 (401)
T ss_dssp             ------------EEEECTTSEEEEE
T ss_pred             ------------EEEEeCCCcEEEE
Confidence                        5555555555555

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=279.16  Aligned_cols=280  Identities=14%  Similarity=0.157  Sum_probs=220.7

Q ss_pred             cCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee--cc-------------cCCCCCeeEEEEe-
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC--GF-------------KASSGLVKAIVIS-   91 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~--~~-------------~~~~~~v~~~~~~-   91 (368)
                      +...+....+.+|.+.|++++|++   ++|++|+.||.|++||+.....  .+             .+|...|.+++|+ 
T Consensus        30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            344556677889999999999976   4999999999999999874321  11             3599999999997 


Q ss_pred             --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC---C
Q 047325           92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD---C  166 (368)
Q Consensus        92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  166 (368)
                        +.+|++++.||.|++||+.+++.....                                 .+...+.++.+.+.   +
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTLQTADVF---------------------------------NFEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTTEEEEEE---------------------------------ECSSCEEEEEECSSCSSC
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCCccceec---------------------------------cCCCceeeeEeecCCCCC
Confidence              468999999999999999876532221                                 26778899999884   4


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc----------ccc
Q 047325          167 GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT----------KHS  234 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~  234 (368)
                      .++++++.|+.|++||+++++.+..+..|...|.+++|+|++  .+++++.||.|++||++......          ...
T Consensus       157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence            599999999999999999999999999999999999999998  58899999999999998654210          011


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-----cceEEEEEE-eCCCEEEEeeCCCeE
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-----HKLAVLCLA-AAGKLVFSGSADKTI  308 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~dg~i  308 (368)
                      .......|...|.+++|+|++++|++++.||.|++||++++.........     .......+. ..+..+++++.|+.|
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence            12223568889999999999999999999999999999976554222111     011112222 245667777889999


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      ++||+.+.  ..+..+.+|..+|++++|+|++.++++
T Consensus       317 ~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          317 AVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EEEETTTC--CEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EEEECcCC--cceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            99999876  778889999999999999999994443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=280.70  Aligned_cols=273  Identities=14%  Similarity=0.241  Sum_probs=223.6

Q ss_pred             ccCcCCcEEEEEecCC---EEEEccCCCcEEEEcC----Ccce--------ecccC----------CCCCeeEEEEe--C
Q 047325           40 LVREEGHIYSLAASKD---LLYTGSDSKNIRVWKN----LKEF--------CGFKA----------SSGLVKAIVIS--G   92 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~----~~~~--------~~~~~----------~~~~v~~~~~~--~   92 (368)
                      ...|.+.|.+++|+++   +|++|+.||.|++||+    ....        ..+..          |...|.+++|+  +
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            3456699999999854   9999999999999999    5332        22222          67799999998  7


Q ss_pred             CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325           93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA  172 (368)
Q Consensus        93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  172 (368)
                      ++|++++.||.|++||. +++.                                ...+.+|...|.+++|+|++++|+++
T Consensus       121 ~~l~~~~~dg~i~i~~~-~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNK-TGAL--------------------------------LNVLNFHRAPIVSVKWNKDGTHIISM  167 (425)
T ss_dssp             SEEEEEETTSCEEEEET-TSCE--------------------------------EEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEeCCCeEEEEeC-CCCe--------------------------------eeeccCCCccEEEEEECCCCCEEEEE
Confidence            89999999999999993 3321                                11233489999999999999999999


Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCCc---------------eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDDA---------------VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      +.|+.|++||+.+++.+..+..+...               +.++.|++++.+++++.|+.|++||++..      ....
T Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~------~~~~  241 (425)
T 1r5m_A          168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK------TPTG  241 (425)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS------SCSE
T ss_pred             ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC------ceee
Confidence            99999999999999999998887776               89999999999999999999999999865      2455


Q ss_pred             eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCC
Q 047325          238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .+..|...|.+++|+|++++|++++.||.|++||+++.... ..+..|...+.+  +++++ ++++++.||.|++||+.+
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred             eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence            66788999999999999999999999999999999986554 455667766654  45567 999999999999999987


Q ss_pred             CceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .  ..+..+..|..+|++++|+|++.            .|++++.||.|++|
T Consensus       320 ~--~~~~~~~~~~~~i~~~~~s~~~~------------~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          320 N--TLLALSIVDGVPIFAGRISQDGQ------------KYAVAFMDGQVNVY  357 (425)
T ss_dssp             T--EEEEEEECTTCCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred             C--cEeEecccCCccEEEEEEcCCCC------------EEEEEECCCeEEEE
Confidence            6  67788889999999999999999            56666666666665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.2e-40  Score=274.93  Aligned_cols=243  Identities=17%  Similarity=0.234  Sum_probs=193.5

Q ss_pred             eccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325           39 SLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~  108 (368)
                      .+.+|.+.|++++|++  ++||+|+.|++|++||+...    +..+.+|.+.|.+++|+    +++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4679999999999974  59999999999999998643    45688999999999995    68999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      ++++....                              ...+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+
T Consensus        88 ~~~~~~~~------------------------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           88 EENGTWEK------------------------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CSSSCCCE------------------------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             CCCCcceE------------------------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            98653111                              1123459999999999997  789999999999999999876


Q ss_pred             e---EEEEeecCCCceEEEEeCCC-----------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325          187 K---CLESVSAHDDAVNSVVSSSE-----------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA  245 (368)
Q Consensus       187 ~---~~~~~~~~~~~v~~~~~~~~-----------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  245 (368)
                      .   ....+.+|...+.+++|+|+                 + +|++|+.|+.|++||++...   .......+.+|...
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDW  214 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSC
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCc
Confidence            3   23556678899999999987                 3 89999999999999996431   11245567789999


Q ss_pred             EEEEEEcCCC----CEEEEecCCCcEEEEeCCCc---cccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          246 VTALVVSSSR----SIVYCGSSDGLVNFWEREKQ---LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       246 i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      |.+++|+|++    ++|++++.|++|++||+++.   ......+..|...+  ++++|++++|++|+.||.|++|+..
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999986    89999999999999998762   12223445566666  4556789999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.5e-39  Score=273.03  Aligned_cols=270  Identities=14%  Similarity=0.141  Sum_probs=226.9

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEE
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVW  107 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw  107 (368)
                      ....+|.+.|++++|+++  +|++|+.||.|++||+...     ......|...|.+++|+  ++ +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            345689999999999754  9999999999999997632     45566899999999998  78 89999999999999


Q ss_pred             ee-cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee--cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          108 KI-SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR--HSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      |+ .+++.                                 ..+.+  |...|.+++|+| +++|++++.|+.|++||++
T Consensus        85 d~~~~~~~---------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           85 DLIGSPSF---------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             CSSSSSSE---------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred             EeccCCce---------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence            99 76642                                 12234  889999999999 9999999999999999998


Q ss_pred             C---------CeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcC-
Q 047325          185 D---------SKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSS-  253 (368)
Q Consensus       185 ~---------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~-  253 (368)
                      +         ++++..+. |...+.+++|++++ +++++.|+.|++||++. ...    ........+...+.+++|+| 
T Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSG
T ss_pred             ccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCC
Confidence            8         77777776 88999999999987 99999999999999986 322    12334456778899999999 


Q ss_pred             CCCEEEEecCCCcEEEEeCCCc-----cccceeeeccce---------EE--EEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQ-----LSHGGVLKGHKL---------AV--LCLAAAGKLVFSGSADKTICVWRRDGAI  317 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~---------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~  317 (368)
                      +++++++++.||.|++|+++..     ......+..|..         .+  ++++|++++|++|+.||.|++||+.+. 
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-  283 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-  283 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-
Confidence            9999999999999999999876     244456666633         55  555678999999999999999999876 


Q ss_pred             eeeeEeeecc-ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325          318 HTCLSVLTGH-TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       318 ~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~  363 (368)
                       +.+..+.+| ..+|++++  |++.            .|++|+.||.
T Consensus       284 -~~~~~~~~~h~~~v~~~~--~~~~------------~l~s~s~Dg~  315 (342)
T 1yfq_A          284 -KKIKNFAKFNEDSVVKIA--CSDN------------ILCLATSDDT  315 (342)
T ss_dssp             -EEEEECCCCSSSEEEEEE--ECSS------------EEEEEEECTH
T ss_pred             -hHhhhhhcccCCCceEec--CCCC------------eEEEEecCCc
Confidence             677888888 99999999  9998            6888888887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-40  Score=284.87  Aligned_cols=276  Identities=15%  Similarity=0.233  Sum_probs=221.9

Q ss_pred             CCcEEEEEecCC---EEEEc----------cCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325           44 EGHIYSLAASKD---LLYTG----------SDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKI  104 (368)
Q Consensus        44 ~~~i~~~~~~~~---~l~s~----------~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  104 (368)
                      ...|.+++|+++   +|++|          +.|+.|++||+...    ......|...|.+++|+  +.+|++++.||.|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence            346778888754   89999          89999999998754    22334688999999998  7899999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~  183 (368)
                      ++||+.......                            .....+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus        92 ~vw~~~~~~~~~----------------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           92 ELYSTNEANNAI----------------------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             EEECCSSTTSCC----------------------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EEeecccccccc----------------------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            999998732100                            011223449999999999998 899999999999999999


Q ss_pred             cCCe------EEE---EeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc------cccE
Q 047325          184 SDSK------CLE---SVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ------ECAV  246 (368)
Q Consensus       184 ~~~~------~~~---~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~i  246 (368)
                      .+++      ...   .+..|...|.+++|+|+ + .+++++.|+.|++||++...      ....+..+      ...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------EVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------EEEEECCCCCSSCCCCCE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------cceEEeccccccccCCce
Confidence            9876      333   34678899999999998 4 89999999999999998752      33344443      7889


Q ss_pred             EEEEEcCCC-CEEEEecCCC---cEEEEeCCCccccceeee-ccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCCce
Q 047325          247 TALVVSSSR-SIVYCGSSDG---LVNFWEREKQLSHGGVLK-GHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGAIH  318 (368)
Q Consensus       247 ~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~~~  318 (368)
                      .+++|+|++ .++++++.|+   .|++||+++.......+. +|...+.++.  | ++++|++++.||.|++||+.+.  
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--  295 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--  295 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--
T ss_pred             EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--
Confidence            999999987 6899999998   999999998655555666 7887776555  5 7899999999999999998876  


Q ss_pred             eeeEeeeccccCeeEEEEecCC-eeeecCCcceEEEEEeeCCcccccccC
Q 047325          319 TCLSVLTGHTGPVKCLAVEEDR-DSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       319 ~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.+..+.+|..+|++++|+|++ .            .+++++.|+.|++|
T Consensus       296 ~~~~~~~~~~~~v~~~~~s~~~~~------------~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          296 EQLSQFPARGNWCFKTKFAPEAPD------------LFACASFDNKIEVQ  333 (416)
T ss_dssp             CEEEEEECSSSCCCCEEECTTCTT------------EEEECCSSSEEEEE
T ss_pred             ccceeecCCCCceEEEEECCCCCC------------EEEEEecCCcEEEE
Confidence            6788889999999999999998 6            45555556655555

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-39  Score=265.39  Aligned_cols=246  Identities=17%  Similarity=0.263  Sum_probs=196.1

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ..+.+|...|.+++|+  +++|++|+.|++|++||+......                              ....+.+|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------~~~~l~gH   52 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------------------------LIDTLTGH   52 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------------------------CCEEECCC
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------------------------EEEEEccc
Confidence            4567899999999998  889999999999999999753211                              12234569


Q ss_pred             CCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCC
Q 047325          154 SDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       154 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~  226 (368)
                      ...|.+++|+++  +++|++|+.|++|++||+++++  .+..+..|...|.+++|+|+  + +|++++.|+.|++||++.
T Consensus        53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            999999999863  8899999999999999998874  56677889999999999997  5 899999999999999986


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCC-------------CCEEEEecCCCcEEEEeCCCccc---cceeeeccceEEE
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSS-------------RSIVYCGSSDGLVNFWEREKQLS---HGGVLKGHKLAVL  290 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~  290 (368)
                      ...    .....+..|...|.+++|+|+             +++|++|+.|+.|++||+++...   ....+.+|...|.
T Consensus       133 ~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             SSC----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             CCc----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            522    113456788999999999997             57999999999999999986542   3346678888886


Q ss_pred             EEE--eC---CCEEEEeeCCCeEEEEecCCCceee-eEee--eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325          291 CLA--AA---GKLVFSGSADKTICVWRRDGAIHTC-LSVL--TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK  362 (368)
Q Consensus       291 ~~~--~~---~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~  362 (368)
                      ++.  |+   +.+|++|+.|++|++||++...... ...+  ..|...|.+++|+|+++            .|++++.|+
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~------------~las~~~D~  276 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN------------VLALSGGDN  276 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC------------CEEEEETTS
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC------------EEEEEcCCC
Confidence            655  55   3799999999999999997643211 1222  56888999999999999            455666666


Q ss_pred             ccccC
Q 047325          363 SDDDV  367 (368)
Q Consensus       363 ~v~i~  367 (368)
                      +|++|
T Consensus       277 ~v~lw  281 (297)
T 2pm7_B          277 KVTLW  281 (297)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            66665

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-39  Score=272.90  Aligned_cols=250  Identities=21%  Similarity=0.325  Sum_probs=200.0

Q ss_pred             ceecccCCCC-CeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           74 EFCGFKASSG-LVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        74 ~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      .+..+.+|.. .|.+++|+  +++|++|+.|++|++||++++......                             ...
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-----------------------------~~~   57 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-----------------------------VLS   57 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------EEC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------eec
Confidence            3456778887 99999998  889999999999999999876421110                             011


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC--eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      .+|...|.+++|+|++++|++|+.|+.|++||+.++  +++..+.+|...|.+++|+|++ +|++++.|+.|++||++..
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            349999999999999999999999999999999876  4678889999999999999999 9999999999999999765


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEE--EEeCCCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLC--LAAAGKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  304 (368)
                      .   .......+..|...|.+++|+|++++|++++.|+.|++||.+... .....+.+|...|.+  ++|++++|++|+.
T Consensus       138 ~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          138 D---EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             S---CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             C---CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            2   223455677899999999999999999999999999999988654 233566788877755  4568999999999


Q ss_pred             CCeEEEEecCCC-------------ceeeeEeeec-cccCeeEEEEecCCeeeecC--CcceEEEEE
Q 047325          305 DKTICVWRRDGA-------------IHTCLSVLTG-HTGPVKCLAVEEDRDSSSST--SSCAQRWIV  355 (368)
Q Consensus       305 dg~i~iw~~~~~-------------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l  355 (368)
                      |++|++|+....             ...++..+.+ |...|.+++|+|++..++++  ++.+++|.+
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence            999999986321             1234445555 88899999999999955443  233444544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-39  Score=281.24  Aligned_cols=288  Identities=11%  Similarity=0.138  Sum_probs=231.1

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      |.+.|.+++|+++  +|++|+.||.|++||.. .....+..|...|.+++|+  +++|++++.||.|++||+.+++....
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            7889999999855  99999999999999955 3456778899999999998  78999999999999999987764433


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                      ..........                 ............+.++.|+|++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus       187 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          187 FELKETGGSS-----------------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             eeccccCccc-----------------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            2221100000                 0000011123338899999874 688999999999999999999999999999


Q ss_pred             ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc
Q 047325          198 AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL  276 (368)
Q Consensus       198 ~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  276 (368)
                      .|.+++|+|++ +|++++.|+.|++||++..      .....+..|...+.+++|+|++ ++++++.||.|++||+++..
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            99999999999 9999999999999999865      2456667789999999999999 99999999999999998876


Q ss_pred             ccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCc------------------eeeeEeeecccc--CeeEE
Q 047325          277 SHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAI------------------HTCLSVLTGHTG--PVKCL  334 (368)
Q Consensus       277 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~~h~~--~v~~l  334 (368)
                      .. ..+..|...+.  +++|++++|++++.||.|++||+....                  ...+..+..|..  .|+++
T Consensus       322 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  400 (425)
T 1r5m_A          322 LL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL  400 (425)
T ss_dssp             EE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred             Ee-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence            55 45556666664  555689999999999999999987652                  116788888976  99999


Q ss_pred             EEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          335 AVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      +|+|++.            .|++++.||.|++|.
T Consensus       401 ~~s~~~~------------~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          401 SWNCAGN------------KISVAYSLQEGSVVA  422 (425)
T ss_dssp             EECTTSS------------EEEEEESSSCCEEEE
T ss_pred             EccCCCc------------eEEEEecCceEEEEe
Confidence            9999999            688888999999883

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-39  Score=277.20  Aligned_cols=266  Identities=17%  Similarity=0.249  Sum_probs=211.1

Q ss_pred             eeeccCcCCcEEEE-Eec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           37 IGSLVREEGHIYSL-AAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        37 ~~~~~~h~~~i~~~-~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      ...+..|  .+.++ .++  +++|++|+.||.|++||+...  ...+..|...|.+++|+  +++|++|+.||.|++||+
T Consensus        91 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           91 SKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             TTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            3334444  33333 444  559999999999999998744  44567999999999998  779999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      .+++...                                .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus       169 ~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          169 KDGSNPR--------------------------------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             TTCCCCE--------------------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCcCce--------------------------------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            8765322                                23459999999999999999999999999999999999999


Q ss_pred             EEeecC---C---------------------CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325          190 ESVSAH---D---------------------DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC  244 (368)
Q Consensus       190 ~~~~~~---~---------------------~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  244 (368)
                      ..+..+   .                     ..+.+++|+|++ +|++++.||.|++||++....     .......|..
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~  291 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTC  291 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EEEECCTTSS
T ss_pred             EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eEEcccccCC
Confidence            888753   2                     344455567888 999999999999999986532     2333446788


Q ss_pred             cEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeec-cceEEEEE-EeCCCEEEEeeCCCeEEEEecCCCce---
Q 047325          245 AVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCL-AAAGKLVFSGSADKTICVWRRDGAIH---  318 (368)
Q Consensus       245 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~---  318 (368)
                      .+.+++|+|+++ +|++|+.||.|++||++++..+...+.. |...+.++ .+++++|++++.||.|++|++.....   
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~  371 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERP  371 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcc
Confidence            999999999998 9999999999999999987664455554 55556444 45788999999999999999875311   


Q ss_pred             ----eeeEeeeccccCeeEEEEecCCe
Q 047325          319 ----TCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       319 ----~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                          .....+..|...|.+++|+|++.
T Consensus       372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          372 AIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             ceeccCccEEccCCcceEEEEEccCCC
Confidence                11223567889999999999988

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-39  Score=267.58  Aligned_cols=236  Identities=22%  Similarity=0.317  Sum_probs=186.5

Q ss_pred             ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee-e-
Q 047325           74 EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-I-  151 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  151 (368)
                      .+..+.+|...|.+++|++++|++|+.||+|++||+..+.....                              ..+ . 
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~------------------------------~~~~~~   55 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI------------------------------DVLDET   55 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE------------------------------EEECTT
T ss_pred             cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE------------------------------EEEecC
Confidence            35567899999999999988999999999999999976531110                              011 1 


Q ss_pred             ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-------CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-------SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      +|...|.+++|+|++++|++++.|+.|++||+..       .+++..+.+|...|.+++|+|++ +|++++.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            2889999999999999999999999999999853       45677889999999999999999 999999999999999


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEE--eC--CCE
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLA--AA--GKL  298 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~  298 (368)
                      ++....  .......+.+|...|.+++|+|++++|++++.|+.|++||..+.. .....+.+|...+.++.  |+  +.+
T Consensus       136 ~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          136 TDESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             CCTTCC--CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             ccCCCC--CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence            964321  123455677899999999999999999999999999999987542 33456778888886655  45  568


Q ss_pred             EEEeeCCCeEEEEecCCCc------eeeeEeeec-cccCeeEEEEecCCe
Q 047325          299 VFSGSADKTICVWRRDGAI------HTCLSVLTG-HTGPVKCLAVEEDRD  341 (368)
Q Consensus       299 l~~~~~dg~i~iw~~~~~~------~~~~~~~~~-h~~~v~~l~~~~~~~  341 (368)
                      |++|+.|++|++||+....      ......+.+ |..+|++++|++++.
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  263 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL  263 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence            9999999999999986431      133444554 899999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.2e-38  Score=276.62  Aligned_cols=288  Identities=19%  Similarity=0.325  Sum_probs=232.0

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeCCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQDG  102 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg  102 (368)
                      ++...+.+..+.+|.+.|.+++|+++ +|++|+.||+|++||+.+  ....+.+|...|.++++.    +.++++|+.||
T Consensus       148 d~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          148 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred             ECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence            45667788889999999999999866 999999999999999875  456788999999999997    47899999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      .|++||+.+..............  .......       ........+.+|...|.++  +++++++++++.|+.|++||
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYP--LVFHTPE-------ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             CEEEEECCCCCCC------CCSS--EEESCGG-------GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred             cEEEeeCCCCcccccccccCCcc--eEeeccC-------CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence            99999998876433222111000  0000000       0011133456788888887  46788999999999999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      +.+++++..+.+|...|.+++|+|++ .+++|+.||.|++||++.+      .....+..|...|.+++++  +++|+++
T Consensus       297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            99999999999999999999999998 9999999999999999865      3567788899999999997  5899999


Q ss_pred             cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe-eeccccCeeEEEEecC
Q 047325          262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV-LTGHTGPVKCLAVEED  339 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~h~~~v~~l~~~~~  339 (368)
                      +.||.|++||+++..........+...+.++++++++|++|+ ||.|++||+.++  +.+.. +..|..+|++++|+++
T Consensus       369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g--~~~~~~~~~~~~~v~~v~~~~~  444 (464)
T 3v7d_B          369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG--KLVHANILKDADQIWSVNFKGK  444 (464)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC--CEEESCTTTTCSEEEEEEEETT
T ss_pred             eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC--cEEehhhccCCCcEEEEEecCC
Confidence            999999999999876654454556677789999999999998 999999999887  55554 5678999999999843

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.9e-38  Score=263.45  Aligned_cols=243  Identities=21%  Similarity=0.360  Sum_probs=204.2

Q ss_pred             eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325           75 FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI  151 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (368)
                      ...+.+|.+.|.+++|+   +++|++|+.|++|++|++.......                           ......+.
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------------------~~~~~~~~   62 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------------------GVPVRSFK   62 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------------------EEEEEEEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------------------cccceEEe
Confidence            34678999999999997   3799999999999999987543110                           01234566


Q ss_pred             ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      +|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.|+.|++||++..   
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---  139 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---  139 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence            799999999999999999999999999999999999999999999999999999999 9999999999999999743   


Q ss_pred             cccccceeeccccccEEEEEEcCC------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEe
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSS------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSG  302 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  302 (368)
                          ....+.+|...+.++.+.|.      +..|++++.|+.|++||+++.... ..+.+|...+.+  ++|++++|++|
T Consensus       140 ----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          140 ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             ----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             ----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCCCCEEEEE
Confidence                45677889999999999985      448999999999999999876544 456678777754  55689999999


Q ss_pred             eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc-ceEEEEE
Q 047325          303 SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS-CAQRWIV  355 (368)
Q Consensus       303 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~-~~~~w~l  355 (368)
                      +.||.|++||+...  +.+..+.. ..+|.+++|+|++..++++.. ..++|.+
T Consensus       215 ~~dg~i~iwd~~~~--~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~  265 (319)
T 3frx_A          215 GKDGEIMLWNLAAK--KAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSL  265 (319)
T ss_dssp             ETTCEEEEEETTTT--EEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred             eCCCeEEEEECCCC--cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence            99999999999876  56666664 468999999999998877653 4566654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-38  Score=273.44  Aligned_cols=270  Identities=17%  Similarity=0.279  Sum_probs=219.0

Q ss_pred             EEEEEecCC-EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           47 IYSLAASKD-LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      ++.|+|+.+ +||+|. |++|+|||..+.    ...+..|...|++++|+  |++|++|+.||.|++||+++++...   
T Consensus       108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~---  183 (420)
T 4gga_A          108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---  183 (420)
T ss_dssp             CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred             ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE---
Confidence            566888755 777665 999999998753    23456788899999998  8899999999999999998876432   


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-CeEEEEeecCCCc
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-SKCLESVSAHDDA  198 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~  198 (368)
                                                   .+.+|...+.++.++  +..|++|+.|+.+++||... ...+..+.+|...
T Consensus       184 -----------------------------~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          184 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             -----------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             -----------------------------EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence                                         233488999998885  56999999999999999876 4566788999999


Q ss_pred             eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEE--ecCCCcEEEEeCCC
Q 047325          199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYC--GSSDGLVNFWEREK  274 (368)
Q Consensus       199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~  274 (368)
                      +..+.+.|++ .+++++.|+.+++|+......  ..........|...|.+++|+|.+. ++++  |+.|+.|++||+++
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            9999999999 999999999999999986532  1223456677889999999999655 5544  56899999999998


Q ss_pred             ccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          275 QLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      +................++++++.+++++  .||.|+|||+.+.  +++..+.+|.++|++++|+|+|.           
T Consensus       311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~~~V~~l~~spdg~-----------  377 (420)
T 4gga_A          311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGA-----------  377 (420)
T ss_dssp             TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSS-----------
T ss_pred             cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC-----------
Confidence            87765444444444466778888887764  7999999999876  78889999999999999999999           


Q ss_pred             EEEeeCCcccccccC
Q 047325          353 WIVYSGSLDKSDDDV  367 (368)
Q Consensus       353 w~l~sg~~D~~v~i~  367 (368)
                       .|+||+.|++||+|
T Consensus       378 -~l~S~s~D~tvriW  391 (420)
T 4gga_A          378 -TVASAAADETLRLW  391 (420)
T ss_dssp             -CEEEEETTTEEEEE
T ss_pred             -EEEEEecCCeEEEE
Confidence             67788888888877

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.5e-38  Score=269.81  Aligned_cols=280  Identities=18%  Similarity=0.217  Sum_probs=224.7

Q ss_pred             EEEEEecCC---EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCc
Q 047325           47 IYSLAASKD---LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        47 i~~~~~~~~---~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      ...++++++   ++++++.||.|+||++.+      ....+.+|.+.|.+++|+   +++|++|+.||.|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            445778877   444689999999999854      244577899999999996   67999999999999999987743


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEe-
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESV-  192 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-  192 (368)
                      .....                         .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ 
T Consensus       117 ~~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  171 (402)
T 2aq5_A          117 VLPLR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG  171 (402)
T ss_dssp             SSCBC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ccccC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence            22110                         1233456699999999999998 69999999999999999999999999 


Q ss_pred             -ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-cccccc-EEEEEEcCCCCEEEEe---cCCC
Q 047325          193 -SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECA-VTALVVSSSRSIVYCG---SSDG  265 (368)
Q Consensus       193 -~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg  265 (368)
                       ..|...|.+++|+|++ .|++++.|+.|++||++..      .....+ ..|... +.++.|+|++++|++|   +.|+
T Consensus       172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence             7899999999999999 9999999999999999865      234444 566655 8999999999999999   8999


Q ss_pred             cEEEEeCCCccccceeee-ccce--EEEEEEeCCCEEE-EeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecC
Q 047325          266 LVNFWEREKQLSHGGVLK-GHKL--AVLCLAAAGKLVF-SGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      .|++||+++......... .|..  ...++++++++|+ +|+.||.|++||+....  ...+..+. |..+|++++|+|+
T Consensus       246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~  324 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPK  324 (402)
T ss_dssp             EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCG
T ss_pred             eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecc
Confidence            999999997655333322 3333  3466778899886 55679999999998764  22333333 6689999999999


Q ss_pred             CeeeecCCcceEEEEEeeC
Q 047325          340 RDSSSSTSSCAQRWIVYSG  358 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg  358 (368)
                      +.+++++++..++|.+.++
T Consensus       325 ~~~~~s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          325 RGLEVNKCEIARFYKLHER  343 (402)
T ss_dssp             GGSCGGGTEEEEEEEEETT
T ss_pred             cccceecceeEEEEEcCCC
Confidence            9999999999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-40  Score=289.11  Aligned_cols=279  Identities=13%  Similarity=0.124  Sum_probs=206.1

Q ss_pred             eeccCcCCcEEEEEecC--------CEEEEccCCCcEEEEcCCcce-------------ecccCCCCCeeEEEEe-CCEE
Q 047325           38 GSLVREEGHIYSLAASK--------DLLYTGSDSKNIRVWKNLKEF-------------CGFKASSGLVKAIVIS-GEKI   95 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~~~v~~~~~~-~~~l   95 (368)
                      .++.+|.+.|.+++|++        .+||+|+.||+|++||+....             ..+.+|...|.+++|+ +..|
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l  280 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV  280 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence            44677889999999986        399999999999999986431             2567899999999997 6799


Q ss_pred             EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE--EEcCCC-CEEEEE
Q 047325           96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM--SLDQDC-GLLYTA  172 (368)
Q Consensus        96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~  172 (368)
                      ++|+.||+|++||++++...                               ...+.+|...|+++  .|+|++ .+|++|
T Consensus       281 asgs~DgtV~lWD~~~~~~~-------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVP-------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSC-------------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             EEEeCCCEEEEEECCCCCCc-------------------------------eEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence            99999999999999865321                               11234599999999  567887 899999


Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCC--ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDD--AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (368)
                      +.|++|+|||+++++++..+.+|..  .|.+++|+|++ .+++++.|++|++||++...      ....+.+|...|.++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------~~~~l~gH~~~V~sv  403 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------AVHPLVSRETTITAI  403 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------CCEEEEECSSCEEEE
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------cceeeecCCCceEEE
Confidence            9999999999999887777776653  58899999988 89999999999999998752      345677899999999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCccccceeee----ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK----GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  323 (368)
                      +|+|++++|++|+.||+|++||+...... ....    .+...+  .+++|+++.+.. ..  .+.+|+... ++..+..
T Consensus       404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~-~g~~~~~  478 (524)
T 2j04_B          404 GVSRLHPMVLAGSADGSLIITNAARRLLH-GIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTV-NDVSKAK  478 (524)
T ss_dssp             ECCSSCCBCEEEETTTEEECCBSCSSTTT-CC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-----------
T ss_pred             EeCCCCCeEEEEECCCEEEEEechHhhcc-ccccCccceeeeEEEEeccCCCCCeEEc-cC--Cceeccccc-CCcceee
Confidence            99999999999999999999998754221 1110    111133  445667774422 22  233333221 1356778


Q ss_pred             eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.+|..+|.+++|+|++..-.         .+++|+.||.||||
T Consensus       479 l~gh~~~V~~Vafsp~~~~~~---------~lAsg~~~g~vrlw  513 (524)
T 2j04_B          479 IDAHGINITCTKWNETSAGGK---------CYAFSNSAGLLTLE  513 (524)
T ss_dssp             ---CCCSCCCEEECCSTTTTT---------EEEEECTTSEEEEE
T ss_pred             ecCCCceEEEEECCCCCCccH---------HHHhhccCceEEEE
Confidence            889999999999999953000         47788888888887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.7e-39  Score=270.88  Aligned_cols=241  Identities=19%  Similarity=0.210  Sum_probs=196.9

Q ss_pred             eeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           36 LIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      +.....+|.+.|.+++|+++ .+++++.||+|+|||+.+..      ....+|...|.+++|+  +++|++|+.||.|++
T Consensus        86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34445679999999999877 77888999999999986432      2345799999999998  789999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISD  185 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~  185 (368)
                      ||+++++...                                .+.+|...|++++|++++. ++++++.|+.|++||+++
T Consensus       166 wd~~~~~~~~--------------------------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          166 WDLSQKAVLK--------------------------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             EETTTTEEEE--------------------------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             EECCCCcEEE--------------------------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            9998765322                                2334999999999999875 789999999999999999


Q ss_pred             CeEEEEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEE
Q 047325          186 SKCLESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYC  260 (368)
Q Consensus       186 ~~~~~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~  260 (368)
                      +++...+.  .+...+.+++|+|++  +|++|+.|+.|++||++..      .....+..|...|++++|+|++ ++|++
T Consensus       214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence            88776554  466789999999986  7889999999999999865      3566778899999999999987 58999


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCC
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |+.|+.|++||+++++..  ...+|...|.+++  | ++.+|++|+.||+|++|++...
T Consensus       288 gs~D~~i~iwd~~~~~~~--~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          288 ISEDCTVAVLDADFSEVF--RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EETTSCEEEECTTSCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EeCCCEEEEEECCCCcEe--EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999987655  3347888886655  5 6889999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-38  Score=274.62  Aligned_cols=258  Identities=12%  Similarity=0.150  Sum_probs=201.1

Q ss_pred             EEEEEec--CCEEEEccCCCcEEEEcCCcceecccCCCCCeeEE-EEe--CCEEEEEeCCCeEEEEeecCCCccccccCC
Q 047325           47 IYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAI-VIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAG  121 (368)
Q Consensus        47 i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~-~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  121 (368)
                      +++++|+  +++|++|+.||.|++||..........+...+.++ .++  +++|++|+.||.|++||+.+++....    
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----  134 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI----  134 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE----
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee----
Confidence            3356665  55999999999999999886544333222345444 344  88999999999999999886653222    


Q ss_pred             ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE
Q 047325          122 TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS  201 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  201 (368)
                                                  +.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+
T Consensus       135 ----------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  186 (420)
T 3vl1_A          135 ----------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD  186 (420)
T ss_dssp             ----------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEE
T ss_pred             ----------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEE
Confidence                                        1239999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec---ccccc---------------------EEEEEEcCCCC
Q 047325          202 VVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL---KQECA---------------------VTALVVSSSRS  256 (368)
Q Consensus       202 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~---------------------i~~~~~~~~~~  256 (368)
                      ++|+|++ .|++++.|+.|++||++...      ....+.   .+...                     +.+++|+|+++
T Consensus       187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDGTIRLWECGTGT------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK  260 (420)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTTE------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEeECCCCc------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence            9999999 99999999999999998652      222332   23334                     44455678999


Q ss_pred             EEEEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCC-EEEEeeCCCeEEEEecCCCceeeeEeeec-cccCee
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGK-LVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVK  332 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~  332 (368)
                      +|++++.||.|++||++++.........|...+.++  +|+++ +|++|+.||.|++||+.+.. .++..+.. |..+|+
T Consensus       261 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~  339 (420)
T 3vl1_A          261 YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-CPVGEFLINEGTPIN  339 (420)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEEESTTSCEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-CchhhhhccCCCCce
Confidence            999999999999999998877666666677666555  45677 99999999999999998763 33555655 677888


Q ss_pred             EEEEecCCeeee
Q 047325          333 CLAVEEDRDSSS  344 (368)
Q Consensus       333 ~l~~~~~~~~~~  344 (368)
                      ++.+ +++.+++
T Consensus       340 ~~~~-~~~~~l~  350 (420)
T 3vl1_A          340 NVYF-AAGALFV  350 (420)
T ss_dssp             EEEE-ETTEEEE
T ss_pred             EEEe-CCCCEEE
Confidence            8855 5677433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=276.46  Aligned_cols=302  Identities=13%  Similarity=0.217  Sum_probs=215.3

Q ss_pred             CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-------------eecccCCC------------CCeeEEEEe--C
Q 047325           42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-------------FCGFKASS------------GLVKAIVIS--G   92 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-------------~~~~~~~~------------~~v~~~~~~--~   92 (368)
                      .|.+.|++++|+++  +||+|+.||.|++||+...             ...+.+|.            ..|.+++|+  +
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46789999999865  9999999999999997632             45678898            889999998  3


Q ss_pred             --CEEEEEeCCCeEEEEeecCCCccccccCCcccc--------ceeeeeccCCCCceeEecccceee-eeecCCCEeEEE
Q 047325           93 --EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT--------LKDIFKSSIKPSNYIEVRRHRTAL-WIRHSDAVSCMS  161 (368)
Q Consensus        93 --~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~  161 (368)
                        .+|++++.||.|++||+.++.............        ..........+... ......... ..+|...|.+++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDL-MVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEE-EEEEEEEEEECSCCSSCCCEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhe-eeeccceEEeccCCCcceEEEE
Confidence              689999999999999998654321100000000        00000000000000 011111122 357999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccC-CeEEE-------EeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISD-SKCLE-------SVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |+|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++  .|++|+.||.|++||++......
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999998 799999999984 44444       256799999999999986  89999999999999998763210


Q ss_pred             ccccceeeccccc------------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE-----------
Q 047325          232 KHSLAQTLLKQEC------------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA-----------  288 (368)
Q Consensus       232 ~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------  288 (368)
                        .....+..+..            .|.+++|+|++++|++++. +.|++||++........+..|...           
T Consensus       264 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          264 --RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             --TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             --ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence              11345555554            8999999999999999999 999999998733444566666421           


Q ss_pred             ------EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe------------------------------eeccccCee
Q 047325          289 ------VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV------------------------------LTGHTGPVK  332 (368)
Q Consensus       289 ------~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------------------~~~h~~~v~  332 (368)
                            .++++|++++|++|+.||.|++||+.++....+..                              ...+...|.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence                  26888999999999999999999998763221110                              012345789


Q ss_pred             EEEEecCCeeeecCCc
Q 047325          333 CLAVEEDRDSSSSTSS  348 (368)
Q Consensus       333 ~l~~~~~~~~~~~~~~  348 (368)
                      .++|+|++.++|+++.
T Consensus       421 ~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          421 HTAWHPKENIIAVATT  436 (447)
T ss_dssp             EEEECSSSSEEEEECS
T ss_pred             EEEECCCCCEEEEEec
Confidence            9999999996665543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.5e-38  Score=265.45  Aligned_cols=243  Identities=19%  Similarity=0.296  Sum_probs=205.5

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe--CCEEEEE
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS--GEKIFTG   98 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~s~   98 (368)
                      .........+..|...|.+++|+++  +|++|+.|+.+++|++..        ....+..|...|.++.|+  +..|+++
T Consensus        93 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~  172 (354)
T 2pbi_B           93 SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA  172 (354)
T ss_dssp             TTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             CCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE
Confidence            3455666778889999999999865  999999999999998742        234567899999999998  6799999


Q ss_pred             eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCC
Q 047325           99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDR  176 (368)
Q Consensus        99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~  176 (368)
                      +.||+|++||+++++..                                ..+.+|...|.+++++|  ++++|++|+.||
T Consensus       173 s~D~~v~lwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg  220 (354)
T 2pbi_B          173 SGDGTCALWDVESGQLL--------------------------------QSFHGHGADVLCLDLAPSETGNTFVSGGCDK  220 (354)
T ss_dssp             ETTSEEEEEETTTCCEE--------------------------------EEEECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred             eCCCcEEEEeCCCCeEE--------------------------------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence            99999999999877532                                23445999999999988  468999999999


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS  253 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~  253 (368)
                      .|++||+++++++..+..|...|.+++|+|++ .|++++.|+.|++||++...      ....+  ..+...+.+++|+|
T Consensus       221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~------~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR------EVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEEECT
T ss_pred             eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------EEEEEcCCCcccceeEEEEeC
Confidence            99999999999999999999999999999999 99999999999999998652      12222  22345789999999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEe
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~  312 (368)
                      ++++|++|+.|+.|++||+.++... ..+.+|...+.+  ++|++++|++|+.||+|++|+
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECCCcEEEEECCCCceE-EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999877654 566788887754  556899999999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-38  Score=264.87  Aligned_cols=276  Identities=15%  Similarity=0.185  Sum_probs=221.2

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      |.++|.+++++++  +++++..++.+..|+....  ......|...|.+++|+  +++|++++ ||.|++||+.++....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            4567888998755  8888888887777765533  33445799999999998  77888888 9999999998765322


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe--EEEEeec
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK--CLESVSA  194 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~  194 (368)
                      ....                           ....+|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..
T Consensus        87 ~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           87 PVSQ---------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             CSEE---------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             eeec---------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            1110                           0011388999999999999999999999999999999887  6677888


Q ss_pred             CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      |...+.+++|+|++ .+++++.||.|++||++..      .....+..|...+.+++|+|++++|++++.||.|++||++
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence            99999999999998 9999999999999999865      3456677789999999999999999999999999999999


Q ss_pred             CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325          274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW  353 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w  353 (368)
                      +...............++++|++++|++++.||.|++||++...   ...+..|..+|++++|+|++++           
T Consensus       214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-----------  279 (337)
T 1gxr_A          214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKW-----------  279 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSE-----------
T ss_pred             CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCE-----------
Confidence            87665443333334446667789999999999999999998763   3456789999999999999994           


Q ss_pred             EEeeCCcccccccC
Q 047325          354 IVYSGSLDKSDDDV  367 (368)
Q Consensus       354 ~l~sg~~D~~v~i~  367 (368)
                       |++++.||.|++|
T Consensus       280 -l~~~~~dg~i~~~  292 (337)
T 1gxr_A          280 -FVSTGKDNLLNAW  292 (337)
T ss_dssp             -EEEEETTSEEEEE
T ss_pred             -EEEecCCCcEEEE
Confidence             5555555555555

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.9e-38  Score=260.79  Aligned_cols=241  Identities=24%  Similarity=0.394  Sum_probs=202.2

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|...|.+++|+  +++|++|+.||.|++|++.+++...                                .+.+
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------~~~~   63 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------------------------TISG   63 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------------EECC
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------------------------hhcc
Confidence            44678999999999998  7899999999999999987765322                                2334


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.++.|+|++ ++++++.|+.|++||++..    
T Consensus        64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----  139 (312)
T 4ery_A           64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----  139 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----
T ss_pred             CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----
Confidence            89999999999999999999999999999999999999999999999999999998 9999999999999999865    


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~  309 (368)
                        .....+..|..+|.+++|+|++++|++++.||.|++||+++++........+...+  ++++|++++|++++.||.|+
T Consensus       140 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             --EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence              24566778899999999999999999999999999999998766544444444444  66778899999999999999


Q ss_pred             EEecCCCceeeeEeeeccccCeeE--EEEe-cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          310 VWRRDGAIHTCLSVLTGHTGPVKC--LAVE-EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +||+...  +.+..+.+|...+..  ..++ +++.            .+++|+.||.|++|
T Consensus       218 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~sg~~dg~i~vw  264 (312)
T 4ery_A          218 LWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGK------------WIVSGSEDNLVYIW  264 (312)
T ss_dssp             EEETTTT--EEEEEECSSCCSSSCCCEEEECSSSC------------EEEECCTTSCEEEE
T ss_pred             EEECCCC--cEEEEEEecCCceEEEEEEEEeCCCc------------EEEEECCCCEEEEE
Confidence            9999876  667778888765433  2343 5666            56677777777776

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-37  Score=267.22  Aligned_cols=236  Identities=24%  Similarity=0.430  Sum_probs=197.4

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .|.+++|+++  +|++|+.||+|++||+.+.  ...+.+|...|.+++|+  +++|++++.|++|++||+.+++..... 
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-  203 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-  203 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence            4999999855  9999999999999998753  55688999999999998  789999999999999999876532211 


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe------
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV------  192 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------  192 (368)
                                                      .+...+.+++++| ++++|++|+.|+.|++||+++++.+..+      
T Consensus       204 --------------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~  251 (393)
T 1erj_A          204 --------------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES  251 (393)
T ss_dssp             --------------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             --------------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence                                            2567899999999 8999999999999999999999887776      


Q ss_pred             -ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc------ccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          193 -SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT------KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       193 -~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                       .+|...|.+++|+|++ .|++++.|+.|++||++......      ...+...+.+|...|.+++|+|++++|++|+.|
T Consensus       252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D  331 (393)
T 1erj_A          252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD  331 (393)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence             5788999999999999 99999999999999997643211      112344567889999999999999999999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEe--------CCCEEEEeeCCCeEEEEecCC
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAA--------AGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      +.|++||.+++... ..+.+|...+.++.+        ++++|++|+.||+|++|++..
T Consensus       332 ~~v~iwd~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          332 RGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SEEEEEETTTCCEE-EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEEECCCCeEE-EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99999999987655 567789888877764        468999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-39  Score=267.62  Aligned_cols=246  Identities=18%  Similarity=0.235  Sum_probs=191.3

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      .+.+|.+.|.+++|+  +++|++|+.|++|++||+.++...                              ....+.+|.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------------------------------~~~~l~gH~   57 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------------------------------LIADLRGHE   57 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------------------------------EEEEEECCS
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------------------------------EEEEEcCCC
Confidence            456899999999998  889999999999999999865311                              122355699


Q ss_pred             CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC--eEEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      ..|.+++|++  ++++|++|+.|++|++||++++  +.+..+.+|...|.+++|+|+  + +|++|+.|+.|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999986  4889999999999999999887  466778889999999999997  5 8999999999999999764


Q ss_pred             CCCcccccceeeccccccEEEEEEcCC-----------------CCEEEEecCCCcEEEEeCCCcc--ccceeeeccceE
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSS-----------------RSIVYCGSSDGLVNFWEREKQL--SHGGVLKGHKLA  288 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~  288 (368)
                      ..   .........|...+.+++|+|+                 +++|++|+.|+.|++||++...  .....+.+|...
T Consensus       138 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          138 GQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW  214 (316)
T ss_dssp             SC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred             CC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence            21   1123445678888999999997                 4789999999999999997542  233566788888


Q ss_pred             EEEEE--eCC----CEEEEeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325          289 VLCLA--AAG----KLVFSGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL  360 (368)
Q Consensus       289 ~~~~~--~~~----~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~  360 (368)
                      |.++.  |++    .+|++|+.||+|++|+++...  ......+..|...|.+++|+|++..            |++|+.
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~------------las~~~  282 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI------------LAVSGG  282 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC------------EEEEES
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE------------EEEEcC
Confidence            86665  454    789999999999999987621  1122345678999999999999994            555555


Q ss_pred             ccccccC
Q 047325          361 DKSDDDV  367 (368)
Q Consensus       361 D~~v~i~  367 (368)
                      |++|++|
T Consensus       283 D~~v~lw  289 (316)
T 3bg1_A          283 DNKVTLW  289 (316)
T ss_dssp             SSCEEEE
T ss_pred             CCeEEEE
Confidence            5555555

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=265.26  Aligned_cols=285  Identities=17%  Similarity=0.246  Sum_probs=224.3

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecC-----CEEEEccCCCcEEEEcCCc---ce-ecccCCCCCeeEEEEe--CCEEEE
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASK-----DLLYTGSDSKNIRVWKNLK---EF-CGFKASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~---~~-~~~~~~~~~v~~~~~~--~~~l~s   97 (368)
                      ....+...+..+.+|.+.|++++|++     ++|++|+.||.|++||+..   .. ..+.+|...|.+++|+  +++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            34455667788999999999999985     4899999999999999874   22 5678899999999998  779999


Q ss_pred             EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE--cCCCCEEEEEeCC
Q 047325           98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL--DQDCGLLYTASWD  175 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d  175 (368)
                      ++.||.|++||+++++...                                 +.+|...|.+++|  +|++++|++++.|
T Consensus       104 ~~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d  150 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ---------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWD  150 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE---------------------------------EEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred             EcCCCcEEEEEcCCCCcee---------------------------------eccccCceEEEEEEeCCCCCEEEEccCC
Confidence            9999999999998765321                                 2349999999999  8899999999999


Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR  255 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (368)
                      +.|++||+++++++..+..+. .+.++.+.++ .+++++.++.+++|+++....    ..............++.+.++.
T Consensus       151 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          151 KTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             SEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECT
T ss_pred             CcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccc----hhhhccccccCCCceEEEcccC
Confidence            999999999999998888665 5666666644 778888899999999986532    1111222233445566665554


Q ss_pred             CE----EEEecCCCcEEEEeCCCcc--ccceeeeccce------------EE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          256 SI----VYCGSSDGLVNFWEREKQL--SHGGVLKGHKL------------AV--LCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       256 ~~----l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~------------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ..    +++++.||.|++||++...  .....+..|..            .+  ++++|++++|++|+.||.|++||+.+
T Consensus       225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence            44    9999999999999998753  23345555553            34  55667899999999999999999987


Q ss_pred             CceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325          316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD  366 (368)
Q Consensus       316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i  366 (368)
                      .  .++..+.+|..+|++++|+|++.            .|++|+.|+..+.
T Consensus       305 ~--~~~~~~~~~~~~v~~~~~s~~g~------------~l~~~s~d~~~~~  341 (368)
T 3mmy_A          305 R--TKLKTSEQLDQPISACCFNHNGN------------IFAYASSYDWSKG  341 (368)
T ss_dssp             T--EEEEECCCCSSCEEEEEECTTSS------------CEEEEECCCSTTC
T ss_pred             C--cEEEEecCCCCCceEEEECCCCC------------eEEEEeccccccc
Confidence            6  77888899999999999999999            4566665554443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=257.59  Aligned_cols=271  Identities=17%  Similarity=0.263  Sum_probs=219.1

Q ss_pred             EEEEEecCC-EEEEccCCCcEEEEcCCcc--ee--cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           47 IYSLAASKD-LLYTGSDSKNIRVWKNLKE--FC--GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++|+|+++ +||+| .|++|+|||+.+.  +.  .+..|...|.+++|+  +++|++|+.||+|++||+++++...   
T Consensus        28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---  103 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---  103 (318)
T ss_dssp             CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred             ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---
Confidence            567899866 66665 5999999998753  23  345788899999998  7899999999999999998876422   


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCc
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDA  198 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~  198 (368)
                                                   .+.+|...+.++.+.  +..+++++.++.+++|+.... ..+..+.+|...
T Consensus       104 -----------------------------~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (318)
T 4ggc_A          104 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  152 (318)
T ss_dssp             -----------------------------EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             -----------------------------EecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence                                         233488888776654  569999999999999998765 556778899999


Q ss_pred             eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE---EEEecCCCcEEEEeCCC
Q 047325          199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI---VYCGSSDGLVNFWEREK  274 (368)
Q Consensus       199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~i~d~~~  274 (368)
                      +..+.+.+++ ++++++.|+.|++||++....  ..........+...|.++.++|++..   +++++.++.|++||.+.
T Consensus       153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            9999999999 999999999999999986532  12234455667888999999997653   34678899999999988


Q ss_pred             ccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          275 QLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      ................++.+++..+++++  .|+.|++||+++.  +++.++.+|.++|++++|+|++.           
T Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~gH~~~V~~l~~spdg~-----------  297 (318)
T 4ggc_A          231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGA-----------  297 (318)
T ss_dssp             CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSS-----------
T ss_pred             ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC-----------
Confidence            76665555455556677888888777654  7999999999876  77889999999999999999999           


Q ss_pred             EEEeeCCcccccccCC
Q 047325          353 WIVYSGSLDKSDDDVH  368 (368)
Q Consensus       353 w~l~sg~~D~~v~i~h  368 (368)
                       .|+|||.||+||+|.
T Consensus       298 -~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          298 -TVASAAADETLRLWR  312 (318)
T ss_dssp             -CEEEEETTTEEEEEC
T ss_pred             -EEEEEecCCeEEEEE
Confidence             788999999999983

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-37  Score=292.40  Aligned_cols=266  Identities=20%  Similarity=0.280  Sum_probs=229.2

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~  108 (368)
                      .+.+.+.+|.+.|.+++|+++  +|++|+.||.|++||+.+  ....+..|..+|.+++|+  +++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            456778999999999999866  999999999999999874  456788999999999998  88999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K  187 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~  187 (368)
                      +.+++...                                .+.+|...|++++|+|++++|++++.||.|++||+.++ .
T Consensus        84 ~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             CCCCcEEE--------------------------------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            98775322                                23449999999999999999999999999999999987 7


Q ss_pred             EEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcC--CCCEEEEec
Q 047325          188 CLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSS--SRSIVYCGS  262 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~  262 (368)
                      ....+.+|...|.+++|+| ++ .+++++.||.|++||++....      ..... .+...+.+++|+|  ++++|++++
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            7788889999999999999 66 999999999999999976532      23333 3448899999999  999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .||.|++||++++... ..+.+|...+  .+++|++++|++++.||.|++||+.+.  ..+..+..|...+.+++|+|++
T Consensus       206 ~dg~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~  282 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTG  282 (814)
T ss_dssp             TTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--SEEEEECCSSSSEEEEEECTTC
T ss_pred             CCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEeecCCCcEEEEEEccCC
Confidence            9999999999887654 5566676666  455678999999999999999998876  6777888899999999999998


Q ss_pred             e
Q 047325          341 D  341 (368)
Q Consensus       341 ~  341 (368)
                      .
T Consensus       283 ~  283 (814)
T 3mkq_A          283 R  283 (814)
T ss_dssp             G
T ss_pred             C
Confidence            7

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.2e-37  Score=260.01  Aligned_cols=253  Identities=17%  Similarity=0.258  Sum_probs=199.9

Q ss_pred             ceecccCCCCCeeEEEE--------eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEeccc
Q 047325           74 EFCGFKASSGLVKAIVI--------SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRH  145 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~--------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (368)
                      ....+.+|...|++++|        ++.+|++|+.|++|++||+...+.....                         ..
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-------------------------~~   67 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-------------------------GI   67 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-------------------------EE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-------------------------cc
Confidence            34567899999999999        3679999999999999999765421100                         01


Q ss_pred             ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325          146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~  224 (368)
                      ....+.+|...|.+++|+|++.++++++.|++|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            123456799999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCC----------CEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--E
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSR----------SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--L  292 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~  292 (368)
                      +...    .........|...|.+++|+|++          .+|++++.||.|++||...  .....+.+|...+.+  +
T Consensus       148 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          148 LGEC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             SSCE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred             cCCc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence            7321    11112223688899999999987          7999999999999999543  233456678777754  5


Q ss_pred             EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC-CcceEEEEEeeCC
Q 047325          293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSCAQRWIVYSGS  359 (368)
Q Consensus       293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l~sg~  359 (368)
                      +|++++|++|+.||.|++||+.... .....+ .+...|++++|+|++.+++++ ++..++|.+.++.
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~-~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLT-YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCS-SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCc-ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            5689999999999999999985431 223333 355679999999999977655 4557788776543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.7e-38  Score=305.32  Aligned_cols=285  Identities=19%  Similarity=0.255  Sum_probs=238.0

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      ....+.+|.+.|++++|+++  +|++|+.||+|++||..+  ....+.+|...|.+++|+  +++|++++.||.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34467899999999999865  999999999999999874  466788999999999998  789999999999999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCe
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      .+++...                                .+.+|...|.+++|+|  ++.++++++.|+.|++||+.+++
T Consensus       687 ~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          687 ATGKLVH--------------------------------TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             TTCCEEE--------------------------------EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CCCceEE--------------------------------EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            8775322                                3345999999999999  55689999999999999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-------eeccccccEEEEEEcCCCCEEE
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-------TLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      ++..+.+|...|.+++|+|++ .+++++.||.|++||++............       ........+.+++|+|+++.++
T Consensus       735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence            999999999999999999999 99999999999999998653211100000       0112234688999999999999


Q ss_pred             EecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      +++ ++.+.+||+.++........+|...+  .+++|++.++++++.||.|++|++.+.  ..+..+.+|...|++++|+
T Consensus       815 ~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          815 VAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--EEEEEECCCSSCEEEEEEC
T ss_pred             EEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeeecCCCccceEEEEEC
Confidence            987 68999999998877655555676665  566678999999999999999999876  6778889999999999999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |++.            .+++++.|+.|++|
T Consensus       892 pdg~------------~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          892 PDGS------------SFLTASDDQTIRVW  909 (1249)
T ss_dssp             TTSS------------EEEEEETTSCEEEE
T ss_pred             CCCC------------EEEEEeCCCeEEEE
Confidence            9999            57777777777777

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=288.72  Aligned_cols=195  Identities=9%  Similarity=0.083  Sum_probs=163.2

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceec-ccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcc
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCG-FKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      ..+|.+.|++++|+++  +||+|+.||+|++|+....... ...|...|.+++|+ +++|++++.|++|++||+.+++..
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence            4589999999999865  9999999999999998754332 23578899999999 778999999999999999876532


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE------
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL------  189 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------  189 (368)
                      ...                                 .|...|++++|+|++++|++|+.||.|++||+++++..      
T Consensus        93 ~~~---------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~  139 (902)
T 2oaj_A           93 TTV---------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN  139 (902)
T ss_dssp             EEE---------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred             EEE---------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence            211                                 16678999999999999999999999999999988764      


Q ss_pred             -----EEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec------------------cccc
Q 047325          190 -----ESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL------------------KQEC  244 (368)
Q Consensus       190 -----~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------------~~~~  244 (368)
                           ..+.+|...|.+++|+|++  .+++|+.||.| +||++...      ....+.                  .|..
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE------IKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE------EEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc------eEEEEecccCCcCCCcccccccccccCC
Confidence                 2345688999999999974  89999999999 99998652      222232                  2357


Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      .|.+++|+|++++|++++.||.|++||+++
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            799999999999999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-38  Score=270.15  Aligned_cols=246  Identities=16%  Similarity=0.193  Sum_probs=195.0

Q ss_pred             cEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCcee
Q 047325           65 NIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYI  140 (368)
Q Consensus        65 ~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (368)
                      .+..|+...  ....+.+|.+.|++++|+  +++|++|+.||+|++||+.+++...                        
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~------------------------  102 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH------------------------  102 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE------------------------
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce------------------------
Confidence            344455543  345688999999999998  7899999999999999998765322                        


Q ss_pred             EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-------EEEEeecCCCceEEEEeCCCC--eEE
Q 047325          141 EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-------CLESVSAHDDAVNSVVSSSEG--LIF  211 (368)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~  211 (368)
                              .+.+|...|.+++|+|++++|++|+.|+.+++||+.+..       ....+.+|...+.++.|.|++  .|+
T Consensus       103 --------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a          103 --------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             --------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             --------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence                    234488999999999999999999999999999987532       345677899999999999975  799


Q ss_pred             EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE-
Q 047325          212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV-  289 (368)
Q Consensus       212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  289 (368)
                      +|+.|+.|++||++.+...... ......+|...|.++++++ ++++|++|+.|+.|++||++........+.+|...| 
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~  253 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN  253 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEE-CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred             EECCCCcEEEEEcCCCcEEEEe-ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence            9999999999999876321000 0011256888999999987 889999999999999999986555556778888777 


Q ss_pred             -EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-------cCeeEEEEecCCeeeec
Q 047325          290 -LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-------GPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       290 -~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~  345 (368)
                       ++++|++++|++|+.||+|++||+.++  ..+..+..+.       ..|++++|+|++.++++
T Consensus       254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          254 SVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             EEEECTTSSEEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             EEEEecCCCeEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence             455678999999999999999999886  4455554332       34899999999995443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.4e-38  Score=263.89  Aligned_cols=288  Identities=13%  Similarity=0.096  Sum_probs=204.3

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEE
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIR  105 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~  105 (368)
                      ..+.+|.+.|++++|+++  +|++|+.||.|++||+..      ....+.+|...|.+++|+    +++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346799999999999755  999999999999999873      344567899999999996    67999999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEc
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~  183 (368)
                      +||+++++.......                       ......+.+|...|.+++|+|+  +++|++++.||.|++||+
T Consensus        85 vwd~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           85 LWEEDPDQEECSGRR-----------------------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEEECTTSCTTSSCS-----------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             EEecCCCcccccccC-----------------------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            999987753211100                       0112334458999999999999  999999999999999999


Q ss_pred             cCCeEEEEee-------------cCCCceEEEEeCCC---C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          184 SDSKCLESVS-------------AHDDAVNSVVSSSE---G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       184 ~~~~~~~~~~-------------~~~~~v~~~~~~~~---~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      ++++.+..+.             .|...+.+++|+|+   + .+++++.++.+.+|+.....    ......+..|...|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i  217 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLI  217 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCE
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcce
Confidence            8876544332             57788999999997   5 99999999999888776542    13356677899999


Q ss_pred             EEEEEcCCC----CEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEe----eCCCeEEEEecCCC
Q 047325          247 TALVVSSSR----SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSG----SADKTICVWRRDGA  316 (368)
Q Consensus       247 ~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~----~~dg~i~iw~~~~~  316 (368)
                      .+++|+|++    ++|++++.||.|++||++........ ..+....  ....+....+..+    .....+.+|+.  .
T Consensus       218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  294 (351)
T 3f3f_A          218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN--L  294 (351)
T ss_dssp             EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCS--E
T ss_pred             eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeeccc--c
Confidence            999999998    89999999999999999875443221 1111111  1122223333333    33444555533  3


Q ss_pred             ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          317 IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ....+..+.+|..+|++++|+|++.+            |++|+.||.|++|
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~------------l~s~~~dg~v~iw  333 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTI------------LSSAGDDGKVRLW  333 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCC------------EEEEETTSCEEEE
T ss_pred             cccEEEEEecccccEEEEEEcCCCCE------------EEEecCCCcEEEE
Confidence            34778888999999999999999994            4555555555554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.4e-37  Score=299.76  Aligned_cols=286  Identities=19%  Similarity=0.275  Sum_probs=233.7

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQ  100 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~  100 (368)
                      -+....+.+..+.+|.+.|.+++|+++  +|++|+.||+|++||+.+  .+..+.+|...|.+++|+    +.++++|+.
T Consensus       642 w~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          642 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred             EECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence            345667788899999999999999855  999999999999999874  456788999999999997    348999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ||.|++||+.+++...                                .+.+|...|++++|+|+++++++++.||.|++
T Consensus       722 d~~v~vwd~~~~~~~~--------------------------------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          722 DFFLKLWDLNQKECRN--------------------------------TMFGHTNSVNHCRFSPDDELLASCSADGTLRL  769 (1249)
T ss_dssp             TSCEEEEETTSSSEEE--------------------------------EECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred             CCeEEEEECCCcchhh--------------------------------eecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence            9999999998775322                                23348899999999999999999999999999


Q ss_pred             EEccCCeEEEEee-------------------------------------------------------cCCCceEEEEeC
Q 047325          181 WRISDSKCLESVS-------------------------------------------------------AHDDAVNSVVSS  205 (368)
Q Consensus       181 wd~~~~~~~~~~~-------------------------------------------------------~~~~~v~~~~~~  205 (368)
                      ||+.+++....+.                                                       +|...|.+++|+
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            9987765443321                                                       567788999999


Q ss_pred             CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-----
Q 047325          206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-----  279 (368)
Q Consensus       206 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----  279 (368)
                      |++ .+++++.||.|++||+...      .....+.+|...|.+++|+|++++|++++.||.|++||+.+.....     
T Consensus       850 p~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  923 (1249)
T 3sfz_A          850 PYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK  923 (1249)
T ss_dssp             SSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence            999 9999999999999999865      3566778899999999999999999999999999999975321100     


Q ss_pred             ---------------------------------eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325          280 ---------------------------------GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       280 ---------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  326 (368)
                                                       ...........+++|+++++++|+.||.|++|++.+.  .....+.+
T Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~--~~~~~~~~ 1001 (1249)
T 3sfz_A          924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGVG 1001 (1249)
T ss_dssp             EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT--SCEEECCC
T ss_pred             ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--ceeeeccc
Confidence                                             0011123344677789999999999999999999876  56777889


Q ss_pred             cccCeeEEEEecCCeeeecCC--cceEEEE
Q 047325          327 HTGPVKCLAVEEDRDSSSSTS--SCAQRWI  354 (368)
Q Consensus       327 h~~~v~~l~~~~~~~~~~~~~--~~~~~w~  354 (368)
                      |...|++++|+|++..+++++  +.+++|.
T Consensus      1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A         1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             CSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            999999999999999777654  4466664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-36  Score=275.71  Aligned_cols=287  Identities=16%  Similarity=0.171  Sum_probs=235.9

Q ss_pred             ceeeeccCcCCc-EEEEEecC--C--EEEEccCCCcEEEEcCC----------cceecccCCCCCeeEEEEe--CCEEEE
Q 047325           35 GLIGSLVREEGH-IYSLAASK--D--LLYTGSDSKNIRVWKNL----------KEFCGFKASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        35 ~~~~~~~~h~~~-i~~~~~~~--~--~l~s~~~dg~i~iw~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~s   97 (368)
                      +.+..+.+|.+. |.+++|++  +  +|++|+.||+|++||+.          .....+..|...|.+++|+  +++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            678889999999 99999987  5  99999999999999985          2344677899999999998  789999


Q ss_pred             EeCC----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEE
Q 047325           98 GHQD----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTA  172 (368)
Q Consensus        98 ~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  172 (368)
                      ++.+    +.|.+||.  ++..                                ..+.+|...|.+++|+|+++ .++++
T Consensus       134 ~~~~~~~~~~v~~~d~--~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~  179 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--GNSL--------------------------------GEVSGHSQRINACHLKQSRPMRSMTV  179 (615)
T ss_dssp             EECCSSCSEEEEETTT--CCEE--------------------------------EECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             eccCCCCccEEEEEEC--CCcc--------------------------------eeeecCCccEEEEEECCCCCcEEEEE
Confidence            9988    78999982  2211                                12234899999999999997 89999


Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCC---ceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceee-c---ccc
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDD---AVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-L---KQE  243 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~---~~~  243 (368)
                      +.|+.|++||+.+++.+..+..|..   .|.+++|+|+ + +|++++.|+.|++||++...      ....+ .   .|.
T Consensus       180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~  253 (615)
T 1pgu_A          180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQ  253 (615)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCC
T ss_pred             eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC------EeEEecccccccC
Confidence            9999999999999999999999999   9999999999 7 89999999999999998653      34444 4   788


Q ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc----ceEEEEEE-eCCCEEEEeeCCCeEEEEecCCCce
Q 047325          244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH----KLAVLCLA-AAGKLVFSGSADKTICVWRRDGAIH  318 (368)
Q Consensus       244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~  318 (368)
                      ..|.+++|+ ++++|++++.||.|++||+++++... .+..+    ...+.++. ++++++++++.||.|++||+...  
T Consensus       254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~--  329 (615)
T 1pgu_A          254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD--  329 (615)
T ss_dssp             SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE-EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE--
T ss_pred             CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE-EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC--
Confidence            999999999 99999999999999999999766553 33333    23333333 48999999999999999998764  


Q ss_pred             eeeEeeeccccCeeEEEEecCCeeeecCCcceEEEE----------------------EeeCCcccccccC
Q 047325          319 TCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWI----------------------VYSGSLDKSDDDV  367 (368)
Q Consensus       319 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~----------------------l~sg~~D~~v~i~  367 (368)
                      ..+..+.+|..+|++++| |+ ...++.++.+++|.                      +++++.|+.|++|
T Consensus       330 ~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~  398 (615)
T 1pgu_A          330 EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN  398 (615)
T ss_dssp             EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEET
T ss_pred             cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEE
Confidence            778888899999999999 88 33333445555543                      5677788888877

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-37  Score=260.94  Aligned_cols=248  Identities=21%  Similarity=0.234  Sum_probs=203.1

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeE
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKI  104 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i  104 (368)
                      .++..+.+|.+.|++++|+++  +|++|+.||.|++||+..    ....+.+|...|.+++|+    +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            456778999999999999855  999999999999999862    345678999999999997    7899999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEE
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWR  182 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd  182 (368)
                      ++||+.+++...                              ...+.+|...|.+++|+|+  +.+|++++.|+.|++||
T Consensus        82 ~iwd~~~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           82 LIWKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             EEEEEETTEEEE------------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCceeE------------------------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            999998764111                              1223348899999999999  99999999999999999


Q ss_pred             ccCCe--EEEEeecCCCceEEEEeCC-------------CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          183 ISDSK--CLESVSAHDDAVNSVVSSS-------------EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       183 ~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      +.++.  ....+..|...|.+++|+|             ++ .+++++.|+.|++||++....  .......+..|...|
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWV  209 (379)
T ss_dssp             CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCE
T ss_pred             cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcE
Confidence            98873  4556778999999999999             46 999999999999999986532  223445677899999


Q ss_pred             EEEEEcCC---CCEEEEecCCCcEEEEeCCCcccc----ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          247 TALVVSSS---RSIVYCGSSDGLVNFWEREKQLSH----GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       247 ~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .+++|+|+   +++|++++.||.|++||+++....    ......|...+  ++++|++++|++++.||.|++|++.
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99999999   899999999999999999875321    11222355555  4566789999999999999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-36  Score=257.54  Aligned_cols=248  Identities=17%  Similarity=0.245  Sum_probs=205.5

Q ss_pred             cCCCceeeeccC-cCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEE
Q 047325           31 LPQNGLIGSLVR-EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIR  105 (368)
Q Consensus        31 ~~~~~~~~~~~~-h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~  105 (368)
                      +..+.....+.. |.+.|.+++|+++  +|++|+.||.|++||+.+  ....+..|...|.+++|++++|++|+.||.|+
T Consensus       120 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  199 (401)
T 4aez_A          120 ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH  199 (401)
T ss_dssp             TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEE
Confidence            344555555544 8899999999755  999999999999999874  46678899999999999999999999999999


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||++.....                               ...+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       200 i~d~~~~~~~-------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          200 HHDVRIANHQ-------------------------------IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             EEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             EEecccCcce-------------------------------eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence            9999854321                               223445999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC--eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-  260 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  260 (368)
                      ++++..+..|...|.+++|+|++  .+++++  .|+.|++||++...      ....+ .+...+.+++|+|+++++++ 
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~------~~~~~-~~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA------RVNTV-DAGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC------EEEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred             CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC------EEEEE-eCCCcEEEEEECCCCCeEEEE
Confidence            99999999999999999999977  666655  79999999998652      23333 35678999999999999999 


Q ss_pred             -ecCCCcEEEEeCCCccccc-eeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          261 -GSSDGLVNFWEREKQLSHG-GVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       261 -~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                       |+.||.|++||++++.... ..+.+|...+  ++++|++++|++++.||.|++|++.++
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             eecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence             5589999999998754332 3356777766  456678999999999999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=281.14  Aligned_cols=315  Identities=11%  Similarity=0.128  Sum_probs=213.2

Q ss_pred             eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccC------------------CCCCeeEEEEe--CC
Q 047325           39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKA------------------SSGLVKAIVIS--GE   93 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~------------------~~~~v~~~~~~--~~   93 (368)
                      .+.+|.++|.+++|+++   .|++|+.||.| +||+...  ...+..                  |...|.+++|+  +.
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            45789999999999974   89999999999 9998753  333433                  35789999998  78


Q ss_pred             EEEEEeCCCeEEEEeecCCCccccccC-----C------------ccccceee-------------eecc-CCC----Cc
Q 047325           94 KIFTGHQDGKIRVWKISPKNQSVHKRA-----G------------TLPTLKDI-------------FKSS-IKP----SN  138 (368)
Q Consensus        94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~-----~------------~~~~~~~~-------------~~~~-~~~----~~  138 (368)
                      +|++|+.||+|++||+.+++.......     .            .......+             +... ...    ..
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            999999999999999988765432110     0            00000000             0000 000    00


Q ss_pred             eeEec-c--------------------cceeeee-ecCCCEeEEEEcC----------CCCEEEEEeCCCcEEEEEccCC
Q 047325          139 YIEVR-R--------------------HRTALWI-RHSDAVSCMSLDQ----------DCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       139 ~~~~~-~--------------------~~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      ..... .                    .....+. ++...|.++.+.+          +...+++++.|+.|++||+.++
T Consensus       305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g  384 (902)
T 2oaj_A          305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG  384 (902)
T ss_dssp             EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence            10000 0                    0011111 3567788888765          2347889999999999999777


Q ss_pred             eEEEE-----------------------------------------eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325          187 KCLES-----------------------------------------VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       187 ~~~~~-----------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~  224 (368)
                      .....                                         +.+|...+.+++|+|++ .|++|+.|++|++||+
T Consensus       385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~  464 (902)
T 2oaj_A          385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA  464 (902)
T ss_dssp             CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred             CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence            54322                                         12333444555667888 9999999999999999


Q ss_pred             CCCCCCcccccceee-----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc----------------------
Q 047325          225 EQHGKGTKHSLAQTL-----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS----------------------  277 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------  277 (368)
                      ..+...........+     .+|...|.+++|+|++++||+|+.||+|++||+.+++.                      
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN  544 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred             CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence            875321000000011     26888999999999999999999999999999876521                      


Q ss_pred             ----------------------cceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceee---eEeee-cccc
Q 047325          278 ----------------------HGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTC---LSVLT-GHTG  329 (368)
Q Consensus       278 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~-~h~~  329 (368)
                                            +...+.+|...|  ++++||| +||+|+.|++|++||+++.....   +..+. +|..
T Consensus       545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~  623 (902)
T 2oaj_A          545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA  623 (902)
T ss_dssp             GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred             CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence                                  124455677766  5566799 99999999999999987763211   12343 8999


Q ss_pred             CeeEEEEe-----cCC---eeeecCCcceEEEEEeeCCcccccccC
Q 047325          330 PVKCLAVE-----EDR---DSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       330 ~v~~l~~~-----~~~---~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|++|+|+     |||   +            .|++|+.|++||+|
T Consensus       624 ~V~sv~Fs~~~~~~Dg~~~~------------~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          624 CVTCIEFVIMEYGDDGYSSI------------LMVCGTDMGEVITY  657 (902)
T ss_dssp             CEEEEEEEEEECTTSSSEEE------------EEEEEETTSEEEEE
T ss_pred             ceEEEEEEEEecCCCCCcce------------EEEEEecCCcEEEE
Confidence            99999999     885   6            35555555555555

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.1e-36  Score=263.33  Aligned_cols=247  Identities=22%  Similarity=0.343  Sum_probs=211.9

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEE
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVW  107 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw  107 (368)
                      ++...+.+..+.+|.+.|.++++++++|++|+.||+|++||+.+  ....+..|...|.+++|+++.+++|+.||.|++|
T Consensus       159 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          159 DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             ESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             eCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence            35567778889999999999999999999999999999999874  4567889999999999999999999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |+.++.....                             ...+.+|...|.++++  +++++++|+.||.|++||+++++
T Consensus       239 d~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~  287 (435)
T 1p22_A          239 DMASPTDITL-----------------------------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE  287 (435)
T ss_dssp             ECSSSSCCEE-----------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred             eCCCCCCcee-----------------------------eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence            9987653211                             1223458999999999  67899999999999999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          188 CLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      .+..+.+|...|.++.+. +..+++|+.||.|++||++++      .....+..|...|.+++|  ++++|++|+.||.|
T Consensus       288 ~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i  358 (435)
T 1p22_A          288 FVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI  358 (435)
T ss_dssp             EEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcE
Confidence            999999999999999994 349999999999999999875      356677889999999999  78899999999999


Q ss_pred             EEEeCCCccc--------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          268 NFWEREKQLS--------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       268 ~i~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ++||+++...        ....+.+|...+.++.+++.+|++|+.||.|++||+...
T Consensus       359 ~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred             EEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence            9999875541        335667899999999999999999999999999999765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=258.37  Aligned_cols=248  Identities=18%  Similarity=0.261  Sum_probs=199.0

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|...|.+++|+  +++|++|+.||.|++||+......                              ....+.+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------~~~~~~~   53 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------LIDTLTG   53 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------------------------------EEEEECC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------------------------------eeeEecC
Confidence            45678999999999998  789999999999999999743211                              1123445


Q ss_pred             cCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcC
Q 047325          153 HSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~  225 (368)
                      |...|++++|+++  +++|++++.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+++++.|+.|++||++
T Consensus        54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            9999999999987  8999999999999999999987  77788889999999999998  7 99999999999999998


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcC-------------CCCEEEEecCCCcEEEEeCCCccc---cceeeeccceEE
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSS-------------SRSIVYCGSSDGLVNFWEREKQLS---HGGVLKGHKLAV  289 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~  289 (368)
                      ....    .....+..|...|.+++|+|             ++++|++++.||.|++||+++...   ....+.+|...+
T Consensus       134 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          134 ENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  209 (379)
T ss_dssp             TTSC----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             CCCc----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence            6532    23345567889999999999             699999999999999999986543   234556677777


Q ss_pred             EE--EEeC---CCEEEEeeCCCeEEEEecCCCce---eeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEEe
Q 047325          290 LC--LAAA---GKLVFSGSADKTICVWRRDGAIH---TCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIVY  356 (368)
Q Consensus       290 ~~--~~~~---~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l~  356 (368)
                      .+  ++|+   +++|++++.||.|++||++....   ..+.....|...|++++|+|++.+++++  ++.+++|.+.
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            55  4567   88999999999999999987532   2333334588999999999999965543  3445555554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.2e-36  Score=271.95  Aligned_cols=161  Identities=15%  Similarity=0.171  Sum_probs=141.9

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCC----CcEEEEcCCcceecccCCCCCeeEEEEe--CC-EEEEEeCCCeE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDS----KNIRVWKNLKEFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKI  104 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i  104 (368)
                      ...+..+.+|.+.|.+++|+++  +|++++.|    +.|++||..+....+..|...|.+++|+  +. .+++++.||.|
T Consensus       106 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v  185 (615)
T 1pgu_A          106 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV  185 (615)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence            3667788899999999999866  89999888    7999999888888899999999999998  43 89999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC---CEeEEEEcCC-CCEEEEEeCCCcEEE
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD---AVSCMSLDQD-CGLLYTASWDRTFKV  180 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~d~~i~i  180 (368)
                      ++||+.+.+...                                .+.+|..   .|.+++|+|+ +++|++++.|+.|++
T Consensus       186 ~vwd~~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          186 VFYQGPPFKFSA--------------------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  233 (615)
T ss_dssp             EEEETTTBEEEE--------------------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             EEEeCCCcceee--------------------------------eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            999987654322                                2233777   9999999999 999999999999999


Q ss_pred             EEccCCeEEEEe-e---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325          181 WRISDSKCLESV-S---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       181 wd~~~~~~~~~~-~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      ||+.+++.+..+ .   .|...|.+++|+ ++ .|++++.|+.|++||++..
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence            999999999999 6   899999999999 77 9999999999999999754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=268.11  Aligned_cols=229  Identities=13%  Similarity=0.086  Sum_probs=177.4

Q ss_pred             eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----
Q 047325           91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----  165 (368)
Q Consensus        91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  165 (368)
                      .+..+++++.|++|++|++.+++....                            ....+.+|.+.|.+++|+|+     
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~----------------------------~~~~l~~~~~~V~~v~wsp~~~~~~  223 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCV----------------------------KVQTIVHSFGEVWDLKWHEGCHAPH  223 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEE----------------------------EEEEEEECCCSEEEEEECSSCCCSS
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCce----------------------------EEEEEEecCCcEEEEEECCCCCCCC
Confidence            366789999999999999987652110                            01123347889999999996     


Q ss_pred             -CCEEEEEeCCCcEEEEEccCCeE-----------EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          166 -CGLLYTASWDRTFKVWRISDSKC-----------LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       166 -~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                       +.+|++++.||+|++||+.+++.           ...+.+|...|.+++|++++.|++|+.||+|++||++....    
T Consensus       224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~----  299 (524)
T 2j04_B          224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV----  299 (524)
T ss_dssp             SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS----
T ss_pred             CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC----
Confidence             57999999999999999976632           24677899999999999888999999999999999986422    


Q ss_pred             ccceeeccccccEEEE--EEcCCC-CEEEEecCCCcEEEEeCCCccccceeeeccc----eEEEEEEeCCCEEEEeeCCC
Q 047325          234 SLAQTLLKQECAVTAL--VVSSSR-SIVYCGSSDGLVNFWEREKQLSHGGVLKGHK----LAVLCLAAAGKLVFSGSADK  306 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg  306 (368)
                       +...+..|...|.++  +|+|++ ++|++++.|++|++||+++..... .+.+|.    ...++++|+++.+++++.|+
T Consensus       300 -~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          300 -PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS  377 (524)
T ss_dssp             -CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred             -ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCC
Confidence             344577899999999  578887 899999999999999999866543 333443    23478899999999999999


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|++||++..  .++..+.+|.++|++|+|+|+++            .|++|+.|++|++|
T Consensus       378 tv~lwd~~~~--~~~~~l~gH~~~V~sva~Sp~g~------------~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          378 SLRAVPSRAA--FAVHPLVSRETTITAIGVSRLHP------------MVLAGSADGSLIIT  424 (524)
T ss_dssp             EEEEEETTCT--TCCEEEEECSSCEEEEECCSSCC------------BCEEEETTTEEECC
T ss_pred             cEEEEECccc--ccceeeecCCCceEEEEeCCCCC------------eEEEEECCCEEEEE
Confidence            9999999876  55567888999999999999999            57778888888777

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.1e-35  Score=253.38  Aligned_cols=266  Identities=19%  Similarity=0.278  Sum_probs=204.3

Q ss_pred             cCCCceeee--ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeE
Q 047325           31 LPQNGLIGS--LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKI  104 (368)
Q Consensus        31 ~~~~~~~~~--~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  104 (368)
                      ...++.+..  +.+|.+.|++|+|+++  +|++|+.||+|++||+.+  .+..+.+|...+.++.+++..|++|+.|+.+
T Consensus       132 ~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i  211 (420)
T 4gga_A          132 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI  211 (420)
T ss_dssp             TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCce
Confidence            344555554  4577888999999855  999999999999999874  4667889999999999999999999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      ++||.......                               ...+.+|...+..+.++|+++++++++.|+.+++||..
T Consensus       212 ~~~d~~~~~~~-------------------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          212 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             eEeeeccccee-------------------------------eEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            99998765421                               22345599999999999999999999999999999998


Q ss_pred             CCe----EEEEeecCCCceEEEEeCCCC--eEEE--EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325          185 DSK----CLESVSAHDDAVNSVVSSSEG--LIFT--GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS  256 (368)
Q Consensus       185 ~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  256 (368)
                      +++    .+.....|...|.+++|+|.+  .+++  |+.|+.|++||++++.      ....+ .+...+.++.|+|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~------~~~~~-~~~~~v~~~~~~~~~~  333 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAV-DAHSQVCSILWSPHYK  333 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE------EEEEE-ECSSCEEEEEEETTTT
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc------cceee-ccccceeeeeecCCCC
Confidence            765    355677889999999999987  5544  4679999999998762      23333 3456789999999999


Q ss_pred             EEEEec--CCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCee
Q 047325          257 IVYCGS--SDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK  332 (368)
Q Consensus       257 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~  332 (368)
                      .+++++  .|+.|++||++++... ..+.+|...|.++  +|++++|++|+.|++|++||+...  .+......+...+.
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~--~~~~~~~~~~~~~~  410 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL--DPARRREREKASAA  410 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS--SCC-----------
T ss_pred             eEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC--CccchhhhccCCcc
Confidence            888754  7999999999987665 5678899888655  568999999999999999998654  23334444444444


Q ss_pred             EEEEe
Q 047325          333 CLAVE  337 (368)
Q Consensus       333 ~l~~~  337 (368)
                      ...|.
T Consensus       411 ~~s~~  415 (420)
T 4gga_A          411 KSSLI  415 (420)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            43443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-35  Score=270.87  Aligned_cols=244  Identities=23%  Similarity=0.387  Sum_probs=196.7

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      ......+.+|.+.|.+++|+++  +|++|+.||+|++||+.+.  ...+.+|...|.+++|+  +++|++|+.|++|++|
T Consensus       420 ~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          420 GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            3445678999999999999855  9999999999999998754  55788999999999998  7899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccC
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~  185 (368)
                      |............                             ..+|...|.+++|+|++  ..+++++.|+.|++||+++
T Consensus       500 d~~~~~~~~~~~~-----------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~  550 (694)
T 3dm0_A          500 NTLGECKYTISEG-----------------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN  550 (694)
T ss_dssp             CTTSCEEEEECSS-----------------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             ECCCCcceeeccC-----------------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence            9754321111100                             11388999999999986  5899999999999999999


Q ss_pred             CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325          186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ++....+.+|...|.+++|+|++ +|++++.||.|++||++...      ....+ .+...+.+++|+|++.+|++++ +
T Consensus       551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~------~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~  622 (694)
T 3dm0_A          551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK------KLYSL-EANSVIHALCFSPNRYWLCAAT-E  622 (694)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE------EEECC-BCSSCEEEEEECSSSSEEEEEE-T
T ss_pred             CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEe-cCCCcEEEEEEcCCCcEEEEEc-C
Confidence            99999999999999999999999 99999999999999998652      22333 3456799999999998887765 5


Q ss_pred             CcEEEEeCCCccccceeee------------------ccc--eEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          265 GLVNFWEREKQLSHGGVLK------------------GHK--LAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~------------------~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +.|++||++++........                  .+.  ...++++|++++|++|+.||.|++|++.
T Consensus       623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            6699999987654322110                  011  1235677899999999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-37  Score=261.13  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=184.0

Q ss_pred             ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      ++.+.++|.+++|+  +++|++|+.||.|++||+.++....                              ...+.+|..
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~------------------------------~~~~~~h~~   56 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH------------------------------ARTFSDHDK   56 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE------------------------------CCCBCCCSS
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE------------------------------EEEEecCCc
Confidence            45567899999998  7899999999999999998763111                              112234999


Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .|.+++|+|++++|++++.|+.|++||+.+++   ....+..|...|.+++|+|++ .|++++.|+.|++||++....  
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  134 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--  134 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--
Confidence            99999999999999999999999999999877   677788899999999999999 999999999999999986521  


Q ss_pred             ccccceeecc-ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-----------------ccceeeeccceEEE--E
Q 047325          232 KHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-----------------SHGGVLKGHKLAVL--C  291 (368)
Q Consensus       232 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~~~--~  291 (368)
                       ......+.. |...|.+++|+|++++|++++.|+.|++||++...                 .....+ +|...+.  +
T Consensus       135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence             113455555 89999999999999999999999999999985211                 111222 6776664  4


Q ss_pred             EEeCCCEEEEeeCCCeEEEEecCCCce--eeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          292 LAAAGKLVFSGSADKTICVWRRDGAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ++|++++|++++.||.|++||+.+...  ..+..+.+|..+|++++|+|++.++++++
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence            556899999999999999999987633  22778889999999999999999655554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-36  Score=253.69  Aligned_cols=271  Identities=10%  Similarity=0.037  Sum_probs=193.0

Q ss_pred             cCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      ++.+|++|+.||+|++||+.+...........|.++.+... +++++.|++|++|+..............          
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~----------  115 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK----------  115 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC----------
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc----------
Confidence            45699999999999999987543222222456677777766 9999999999999876532111111000          


Q ss_pred             cCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-  208 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-  208 (368)
                            .      ......+|...|.+++|+|  +++++++++.||.|++||+++++.+..... +...+.+++|+|++ 
T Consensus       116 ------~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~  183 (343)
T 3lrv_A          116 ------V------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL  183 (343)
T ss_dssp             ------E------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC
T ss_pred             ------e------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC
Confidence                  0      0011123678999999999  999999999999999999999998776643 55689999999999 


Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee--eecc
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV--LKGH  285 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~  285 (368)
                      +|++|+.||.|++||++....     ....+.. |..+|.+++|+|++.+|++++ |+.|++||+++.......  +..|
T Consensus       184 ~lasg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 3lrv_A          184 LLALYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP  257 (343)
T ss_dssp             EEEEECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred             EEEEEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence            899999999999999987632     2145555 899999999999999999999 559999999986554221  1112


Q ss_pred             ce----EEEEEEeCCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccccCeeEEEEec---CCeeeecCCcceEEEEEee
Q 047325          286 KL----AVLCLAAAGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE---DRDSSSSTSSCAQRWIVYS  357 (368)
Q Consensus       286 ~~----~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~~~w~l~s  357 (368)
                      ..    ..++++|++++|++++. |+.|++|+++.....  ...    .++..++|.+   +...+++++.+..+..+..
T Consensus       258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            22    24778889999999998 999999999655221  111    5677777877   6665555554444434433


Q ss_pred             C
Q 047325          358 G  358 (368)
Q Consensus       358 g  358 (368)
                      .
T Consensus       332 ~  332 (343)
T 3lrv_A          332 T  332 (343)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=254.26  Aligned_cols=266  Identities=11%  Similarity=0.028  Sum_probs=198.9

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      -+.-...|.+++|+++  ++||++.|++|+  |. +....+.+|...|.+++|+++-     .++.   |++.+.+....
T Consensus        11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~-~~~~~l~gh~~~v~~V~FsPdg-----~~~~---~~~~~~~~~~~   79 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QP-KYAKDINCNSKNLFHVKEFPLE-----FENK---LDFELAQQNGL   79 (588)
T ss_dssp             SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EE-CCCSCCSSBGGGTEEEEEECCC-----CCCT---TTTSCCCSSCS
T ss_pred             HhHhhccEEEEEECCCCCEEEEEcCCceee--cc-cccceecCCCccEEEEEECCCC-----Ccce---EEEEeCCCceE
Confidence            3444678999999866  999999999999  63 3334558999999999997432     3444   44444332222


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                      ....                               |...|.+++|+|+|.+|++++.||.|++||...  ++..+. |..
T Consensus        80 ~~~~-------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~  125 (588)
T 2j04_A           80 LNSQ-------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG  125 (588)
T ss_dssp             STTS-------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred             eecC-------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence            2111                               678899999999999999999999999999544  666666 665


Q ss_pred             -----ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc-ccccceee----ccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          198 -----AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT-KHSLAQTL----LKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       198 -----~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                           .+.+++|+|+| +|++|+.||+|++||+..+.... .......+    .+|...|.+++|+|++  +++++.|+.
T Consensus       126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t  203 (588)
T 2j04_A          126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS  203 (588)
T ss_dssp             CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred             ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe
Confidence                 49999999999 99999999999999998642100 00123343    5677899999999999  888889999


Q ss_pred             EEEEeCCCcccc--ceee-eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE--ecCCe
Q 047325          267 VNFWEREKQLSH--GGVL-KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV--EEDRD  341 (368)
Q Consensus       267 i~i~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~  341 (368)
                      |++||+.++...  ...+ .+|...|.++++.++.|++++ ++.|++||+.+.  .......+|...|.+++|  +|++.
T Consensus       204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~--~~~~~~~gh~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY--SISSLKTGSLENFHIIPLNHEKEST  280 (588)
T ss_dssp             EEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT--EEEEEECSCCSCCCEEEETTCSSCE
T ss_pred             EEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC--eEEEEEcCCCceEEEEEeeeCCCCC
Confidence            999999876642  1234 467777766555578999887 699999999876  332222279999999999  99999


Q ss_pred             eeecCCcce-EEEEE
Q 047325          342 SSSSTSSCA-QRWIV  355 (368)
Q Consensus       342 ~~~~~~~~~-~~w~l  355 (368)
                      .+++++.++ ++|.+
T Consensus       281 ~La~a~edG~klw~~  295 (588)
T 2j04_A          281 ILLMSNKTSYKVLLE  295 (588)
T ss_dssp             EEEECSSCEEEEEES
T ss_pred             EEEEEcCCCCEEEee
Confidence            777766444 36654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.6e-35  Score=248.47  Aligned_cols=246  Identities=15%  Similarity=0.151  Sum_probs=204.8

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      .+..+.+|.+.|.+++|+++  +|++++.||.|++||+...    ...+..|...|.+++|+  +++|++++.||.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            77888999999999999854  9999999999999998654    33456799999999998  7899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc----
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI----  183 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----  183 (368)
                      |++.........                            ....+|...|.+++|+|++++|++++.|+.|++||+    
T Consensus       124 d~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  175 (372)
T 1k8k_C          124 YFEQENDWWVCK----------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  175 (372)
T ss_dssp             EEETTTTEEEEE----------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             EecCCCcceeee----------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence            998765311100                            011227889999999999999999999999999995    


Q ss_pred             --------------cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          184 --------------SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       184 --------------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                                    ..++.+..+..|...|.+++|+|++ .|++++.|+.|++||++..      .....+..|...+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~  249 (372)
T 1k8k_C          176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------MAVATLASETLPLLA  249 (372)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------TEEEEEECSSCCEEE
T ss_pred             ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC------ceeEEEccCCCCeEE
Confidence                          4678889999999999999999999 9999999999999999865      346667788889999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEeCCC--ccc--------------------------------c------ceeeeccceE
Q 047325          249 LVVSSSRSIVYCGSSDGLVNFWEREK--QLS--------------------------------H------GGVLKGHKLA  288 (368)
Q Consensus       249 ~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~--------------------------------~------~~~~~~~~~~  288 (368)
                      ++|+|++++|+++ .|+.|++|+++.  +..                                .      .....+|...
T Consensus       250 ~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  328 (372)
T 1k8k_C          250 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS  328 (372)
T ss_dssp             EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred             EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence            9999999988888 899999999987  310                                0      1222478888


Q ss_pred             EEEEE---eCC---CEEEEeeCCCeEEEEecCCC
Q 047325          289 VLCLA---AAG---KLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       289 ~~~~~---~~~---~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |.++.   +++   .+|++|+.||.|++|++++.
T Consensus       329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence            87775   356   89999999999999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-35  Score=252.45  Aligned_cols=236  Identities=12%  Similarity=0.171  Sum_probs=192.5

Q ss_pred             cccCCCCCeeEEEEe------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           77 GFKASSGLVKAIVIS------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      ...+|..+|.+++|+      ...+++++.++.|++||+.+++........                           ..
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~---------------------------~~   65 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY---------------------------VD   65 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE---------------------------EC
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec---------------------------cc
Confidence            345899999999998      345777777889999999866532211100                           00


Q ss_pred             eecCCCEeEEEEcCC----CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEc
Q 047325          151 IRHSDAVSCMSLDQD----CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~  224 (368)
                      ..|...|.+++|+|+    +.+|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++++.||.|++||+
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            116788999999998    67999999999999999999999999999999999999999 77 9999999999999999


Q ss_pred             CCCCCCcccccceee---ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---------------------
Q 047325          225 EQHGKGTKHSLAQTL---LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---------------------  280 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------  280 (368)
                      +...      ....+   ..|...|.+++|+|++++|++++.||.|++||+++......                     
T Consensus       146 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          146 QTDT------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             TTTE------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             ecCe------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            8652      33444   67899999999999999999999999999999987543311                     


Q ss_pred             ------eeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCce------------eeeEeeeccccCeeEEEEecC--C
Q 047325          281 ------VLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIH------------TCLSVLTGHTGPVKCLAVEED--R  340 (368)
Q Consensus       281 ------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~h~~~v~~l~~~~~--~  340 (368)
                            ....|...+.++.+++++|++++.||.|++||+.....            ..+..+..|...|++++|+|+  +
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence                  11237788888888899999999999999999876533            457788899999999999999  9


Q ss_pred             eeeec
Q 047325          341 DSSSS  345 (368)
Q Consensus       341 ~~~~~  345 (368)
                      .++++
T Consensus       300 ~~l~~  304 (366)
T 3k26_A          300 KMLAL  304 (366)
T ss_dssp             SEEEE
T ss_pred             cEEEE
Confidence            85443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-34  Score=248.68  Aligned_cols=254  Identities=16%  Similarity=0.184  Sum_probs=204.3

Q ss_pred             ceeeeccCcCCcEEEEEec------C---CEEEEccCCCcEEEEcCCc--c-----eecccCC-----CCCeeEEEEe--
Q 047325           35 GLIGSLVREEGHIYSLAAS------K---DLLYTGSDSKNIRVWKNLK--E-----FCGFKAS-----SGLVKAIVIS--   91 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~------~---~~l~s~~~dg~i~iw~~~~--~-----~~~~~~~-----~~~v~~~~~~--   91 (368)
                      ..+..+.+|...|.+++|+      +   ++|++++.||.|++||+..  .     ...+..|     ...|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            3677888999999999986      5   6899999999999999763  2     5667778     5999999998  


Q ss_pred             ----CCE-EEEEeCCCeEEEEeecC------CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           92 ----GEK-IFTGHQDGKIRVWKISP------KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        92 ----~~~-l~s~~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                          +++ |++++.||.|++||+.+      ++.........      + ..             .......|...|.++
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~-~~-------------~~~~~~~~~~~i~~~  192 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE------L-QG-------------TVESPMTPSQFATSV  192 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE------E-EE-------------EECCSSSSCCCCCEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce------e-ee-------------eeccccCCCCCceEE
Confidence                678 99999999999999987      33222000000      0 00             000002278899999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---C---CCceEEEEeCCCC-eEEEEcCC---CeEEEEEcCCCCCC
Q 047325          161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---H---DDAVNSVVSSSEG-LIFTGSAD---GTVKVWKREQHGKG  230 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~  230 (368)
                      +|+|++ +|++++.|+.|++||+++++.+..+..   |   ...|.+++|+|++ +|++++.|   +.|++||++...  
T Consensus       193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--  269 (397)
T 1sq9_A          193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--  269 (397)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--
T ss_pred             EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--
Confidence            999999 999999999999999999999999998   8   9999999999999 99999999   999999998652  


Q ss_pred             cccccceeecc-------------ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee------cc------
Q 047325          231 TKHSLAQTLLK-------------QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK------GH------  285 (368)
Q Consensus       231 ~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~------  285 (368)
                          ....+..             |...|.+++|+|++++|++++.||.|++||+++.+.. ..+.      .|      
T Consensus       270 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~  344 (397)
T 1sq9_A          270 ----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILA  344 (397)
T ss_dssp             ----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCC
T ss_pred             ----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee-EEEecccCcccchhhhhc
Confidence                4555666             8899999999999999999999999999999987655 3444      45      


Q ss_pred             ---------ceEE--EEEEeCC----------CEEEEeeCCCeEEEEecCCC
Q 047325          286 ---------KLAV--LCLAAAG----------KLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       286 ---------~~~~--~~~~~~~----------~~l~~~~~dg~i~iw~~~~~  316 (368)
                               ...+  +++++++          ++|++|+.||.|++|+++++
T Consensus       345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                     6666  5556677          79999999999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.9e-35  Score=248.07  Aligned_cols=285  Identities=11%  Similarity=0.085  Sum_probs=192.8

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVW  107 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw  107 (368)
                      ..+.+.++..|.+.|++++|+++  +|++|+.|+ +++||..........+...+..+.+.  ++.+ ++++.|++|++|
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            34445567899999999999865  888888775 78999875544333333346666665  6665 677888999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-  186 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-  186 (368)
                      |+.+++.....                                 .+...|.++.++++  .++++ .|+.|++||+.++ 
T Consensus        87 d~~~~~~~~~~---------------------------------~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~  130 (355)
T 3vu4_A           87 DDVKKQDVSRI---------------------------------KVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPW  130 (355)
T ss_dssp             ETTTTEEEEEE---------------------------------ECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTC
T ss_pred             ECCCCcEEEEE---------------------------------ECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCc
Confidence            99877643221                                 16678999999876  34444 3789999999988 


Q ss_pred             eEEEEeecCCCceEEEEeCCCCeEEE--EcCCCeEEEEEcCCCCCC---------ccccc-ceeeccccccEEEEEEcCC
Q 047325          187 KCLESVSAHDDAVNSVVSSSEGLIFT--GSADGTVKVWKREQHGKG---------TKHSL-AQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~---------~~~~~-~~~~~~~~~~i~~~~~~~~  254 (368)
                      +.+..+..   +...+++++ ..++.  |+.||.|++||++.....         ....+ ...+.+|...|.+++|+|+
T Consensus       131 ~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~  206 (355)
T 3vu4_A          131 KRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK  206 (355)
T ss_dssp             CBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred             eeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence            76666655   333445555 54444  689999999999864310         00012 5677899999999999999


Q ss_pred             CCEEEEecCCCc-EEEEeCCCccccceeeec-cceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee-----
Q 047325          255 RSIVYCGSSDGL-VNFWEREKQLSHGGVLKG-HKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT-----  325 (368)
Q Consensus       255 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----  325 (368)
                      +++|++|+.|++ |++||+++++.......+ |...+.  +++|++++|++++.|++|++||+..........+.     
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~  286 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM  286 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence            999999999998 999999988776444424 777774  45568999999999999999999754322211111     


Q ss_pred             ----------------ccccCeeEEEEecCCeeeecCC--cceEEEEEeeC
Q 047325          326 ----------------GHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYSG  358 (368)
Q Consensus       326 ----------------~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~sg  358 (368)
                                      .+..+...++|++++..+++++  +...+|.+..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                            1123347799999998665543  33455555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=272.48  Aligned_cols=247  Identities=21%  Similarity=0.228  Sum_probs=199.9

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----cceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----KEFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRV  106 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v  106 (368)
                      +..+.+|.+.|++++|+++  +|++|+.||+|++||+.    .....+.+|.+.|.+++|+    +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            4568899999999999854  99999999999999986    2355788999999999997    679999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~  184 (368)
                      ||+.+++...                              ...+.+|...|++++|+|+  ++.+++|+.||.|++||++
T Consensus        82 wd~~~~~~~~------------------------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEETTEEEE------------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EECCCCcccc------------------------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            9998764111                              1223348999999999999  9999999999999999998


Q ss_pred             CC--eEEEEeecCCCceEEEEeCCC-------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          185 DS--KCLESVSAHDDAVNSVVSSSE-------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       185 ~~--~~~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      ++  .....+.+|...|.+++|+|.             + .+++|+.||.|++||++....  .......+..|...|.+
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeeecCCCCcEEE
Confidence            77  345566789999999999993             5 999999999999999986532  22345567789999999


Q ss_pred             EEEcCC---CCEEEEecCCCcEEEEeCCCccc----cceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          249 LVVSSS---RSIVYCGSSDGLVNFWEREKQLS----HGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       249 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ++|+|+   +++|++++.||.|++||++++..    .......|...+  ++++|++++|++|+.||.|++|++..
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999   89999999999999999987532    112223455555  56778999999999999999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.8e-34  Score=239.56  Aligned_cols=245  Identities=22%  Similarity=0.388  Sum_probs=196.3

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      .......+.+|.+.|.+++|+++  +|++|+.|+.|++|+....  ......+...+..+.+.  +.+|++++.|+.+++
T Consensus        75 ~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~  154 (340)
T 4aow_A           75 YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL  154 (340)
T ss_dssp             SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence            34456788999999999999865  9999999999999998754  34456677778888777  789999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEcc
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~  184 (368)
                      ||+..........                               .+|...+..++|++++  .++++++.|+.|++||++
T Consensus       155 ~d~~~~~~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  203 (340)
T 4aow_A          155 WNTLGVCKYTVQD-------------------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA  203 (340)
T ss_dssp             ECTTSCEEEEECS-------------------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred             EEeCCCceEEEEe-------------------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC
Confidence            9987654322211                               2388999999998854  578899999999999999


Q ss_pred             CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325          185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      +++.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++...      ....+ .+...+.+++|+|++.+ ++++.
T Consensus       204 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~------~~~~~-~~~~~v~~~~~~~~~~~-~~~~~  275 (340)
T 4aow_A          204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK------HLYTL-DGGDIINALCFSPNRYW-LCAAT  275 (340)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE------EEEEE-ECSSCEEEEEECSSSSE-EEEEE
T ss_pred             CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc------eeeee-cCCceEEeeecCCCCce-eeccC
Confidence            999999999999999999999999 99999999999999998652      23333 34567999999998765 45667


Q ss_pred             CCcEEEEeCCCccccce--------eeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          264 DGLVNFWEREKQLSHGG--------VLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      |+.|++||+++......        ....|...|.  +++|++++|++|+.||.|+|||+.++
T Consensus       276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            99999999986543321        2335666664  45578999999999999999999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=237.18  Aligned_cols=243  Identities=19%  Similarity=0.286  Sum_probs=204.0

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEeCCEEEEEeCCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVISGEKIFTGHQDG  102 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~~~~l~s~~~dg  102 (368)
                      ++........+..|.+.|.+++|+++  +|++|+.||.|++|++..     ....+..|...|.++.|+++++++++.||
T Consensus        45 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~  124 (313)
T 3odt_A           45 SKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDK  124 (313)
T ss_dssp             EESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             ECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCC
Confidence            34556777888899999999999855  999999999999999753     35667889999999999999999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVW  181 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw  181 (368)
                      .|++||  ..+.                                ...+..|...+.++.+.| +++++++++.|+.|++|
T Consensus       125 ~i~~~d--~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~  170 (313)
T 3odt_A          125 TAKVWK--EGSL--------------------------------VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW  170 (313)
T ss_dssp             EEEEEE--TTEE--------------------------------EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CEEEEc--CCcE--------------------------------EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence            999999  2221                                122344889999999988 89999999999999999


Q ss_pred             EccCCeEEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          182 RISDSKCLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       182 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      |  ..+....+.. |...+.+++|+|++.+++++.||.|++||++..      .....+..|...|.+++|+|++ .|++
T Consensus       171 d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~l~~  241 (313)
T 3odt_A          171 Q--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG------DVLRTYEGHESFVYCIKLLPNG-DIVS  241 (313)
T ss_dssp             E--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTS-CEEE
T ss_pred             e--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch------hhhhhhhcCCceEEEEEEecCC-CEEE
Confidence            9  5667777777 889999999999999999999999999999865      3466677899999999999998 6889


Q ss_pred             ecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCc
Q 047325          261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAI  317 (368)
Q Consensus       261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~  317 (368)
                      ++.||.|++||+++++.. ..+..|...+.++  +++++ +++++.||.|++||++...
T Consensus       242 ~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLK-QVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EETTSEEEEECTTTCCEE-EEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             EecCCEEEEEECCCCcee-EEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            999999999999987655 4556676666554  45777 6679999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=257.26  Aligned_cols=252  Identities=12%  Similarity=0.208  Sum_probs=191.4

Q ss_pred             EEcCCc-ceecc-cCCCCCeeEEEEeC---CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEe
Q 047325           68 VWKNLK-EFCGF-KASSGLVKAIVISG---EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV  142 (368)
Q Consensus        68 iw~~~~-~~~~~-~~~~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (368)
                      .|+... .+..+ .+|.+.|.+++|+.   .+|++|+.||+|++||+.+.+......                       
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------------  103 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----------------------  103 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----------------------
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----------------------
Confidence            388653 45566 88999999999974   699999999999999987621110000                       


Q ss_pred             cccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc---CCeEEEEeec------------CCCceEEEE--eC
Q 047325          143 RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS---DSKCLESVSA------------HDDAVNSVV--SS  205 (368)
Q Consensus       143 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~  205 (368)
                          .....+|...|++++|+|++++|++++.||.|++||+.   +++.+..+..            +...+.++.  ++
T Consensus       104 ----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          104 ----SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             ----CSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             ----eeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence                00111389999999999999999999999999999995   5544443332            345566665  55


Q ss_pred             CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee
Q 047325          206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       206 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  282 (368)
                      +++ .+++++.|+.|++||++...      ....+..  |...|.+++|+|++++|++|+.||.|++||++++.......
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence            677 99999999999999998753      4555555  78999999999999999999999999999999876654433


Q ss_pred             eccceEEEEEE------eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec--------------------------cccC
Q 047325          283 KGHKLAVLCLA------AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG--------------------------HTGP  330 (368)
Q Consensus       283 ~~~~~~~~~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------------h~~~  330 (368)
                      ..|...+.++.      +++.+|++|+.||.|++||+.+.  ..+..+.+                          |...
T Consensus       254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  331 (437)
T 3gre_A          254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG--HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA  331 (437)
T ss_dssp             CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT--EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred             cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC--cEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence            46777887663      34679999999999999999876  44444443                          5566


Q ss_pred             eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          331 VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       331 v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |++++|+ ++.            .|++|+.|+.|++|
T Consensus       332 v~~l~~~-~~~------------~l~s~~~d~~i~~w  355 (437)
T 3gre_A          332 LSTISVS-NDK------------ILLTDEATSSIVMF  355 (437)
T ss_dssp             GCCEEEE-TTE------------EEEEEGGGTEEEEE
T ss_pred             eEEEEEC-Cce------------EEEecCCCCeEEEE
Confidence            7778887 556            56677777777776

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-34  Score=245.61  Aligned_cols=241  Identities=13%  Similarity=0.140  Sum_probs=189.0

Q ss_pred             eccCcCCcEEEEEecCCEEEEc-----------cCCCcEEEEcCCcc---e--------ecccCCCCCeeEEEEe--CCE
Q 047325           39 SLVREEGHIYSLAASKDLLYTG-----------SDSKNIRVWKNLKE---F--------CGFKASSGLVKAIVIS--GEK   94 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~~l~s~-----------~~dg~i~iw~~~~~---~--------~~~~~~~~~v~~~~~~--~~~   94 (368)
                      .+.+|.+.|.+++++++.+++|           +.|+.+|+|++...   .        .....+...+.+++|+  |++
T Consensus        68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV  147 (365)
T ss_dssp             ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred             EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence            5778999999999999877765           45788999986422   1        1123455668899998  777


Q ss_pred             EEEE--eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325           95 IFTG--HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA  172 (368)
Q Consensus        95 l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  172 (368)
                      ++++  +.|++|++||+++++.....                                 .|...|.+++|+|++++++++
T Consensus       148 la~as~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~V~~v~fspdg~~l~s~  194 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTEKFEI---------------------------------ETRGEVKDLHFSTDGKVVAYI  194 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEEEEEE---------------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCEEEEeECCCCcEEEEe---------------------------------CCCCceEEEEEccCCceEEec
Confidence            6654  47899999999877543221                                 277889999999999999999


Q ss_pred             eCCCcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCCC----eEEEEEcCCCCCCcccccceeecccccc
Q 047325          173 SWDRTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSADG----TVKVWKREQHGKGTKHSLAQTLLKQECA  245 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~  245 (368)
                      +. +.+++|+..+++.+.  ....|...|.+++|+|++ .+++++.|+    .++.|++.....  .......+..|...
T Consensus       195 s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          195 TG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKG  271 (365)
T ss_dssp             CS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSC
T ss_pred             cc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeeeeecCCCCC
Confidence            85 557777777776654  345688899999999999 888888777    688888865421  11223456778899


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      |++++|+|++++||+|+.|+.|+|||+++++.+.....+|...|.  +|+||+++|++|+.|++|+||++..
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999999999999999999998777666778988875  5567999999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.8e-34  Score=247.89  Aligned_cols=248  Identities=17%  Similarity=0.238  Sum_probs=203.1

Q ss_pred             eeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc------------ceecccCCCCCeeEEEEe--CC-EEEEEe
Q 047325           38 GSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK------------EFCGFKASSGLVKAIVIS--GE-KIFTGH   99 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~------------~~~~~~~~~~~v~~~~~~--~~-~l~s~~   99 (368)
                      .....|.+.|++++|+++   +|++++.||.|++||+..            ....+.+|...|.+++|+  +. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            557789999999999864   899999999999999764            344677899999999998  44 999999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTF  178 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i  178 (368)
                      .||.|++|++..+.......                         .....+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             CCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            99999999998753211100                         01123345999999999999 67899999999999


Q ss_pred             EEEEccCC---eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          179 KVWRISDS---KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       179 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      ++||++++   +.+..+..|...|++++|+|++  .+++|+.||.|++||++....     +...+..|...|.+++|+|
T Consensus       257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEEEECS
T ss_pred             EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEEEECC
Confidence            99999987   5777888999999999999988  688999999999999986432     5667778999999999999


Q ss_pred             CCC-EEEEecCCCcEEEEeCCCcc-------------ccceeeeccceEEEEEE--eCCC-EEEEeeCCCeEEEEecCC
Q 047325          254 SRS-IVYCGSSDGLVNFWEREKQL-------------SHGGVLKGHKLAVLCLA--AAGK-LVFSGSADKTICVWRRDG  315 (368)
Q Consensus       254 ~~~-~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~  315 (368)
                      +++ +|++++.||.|++||+....             .......+|...+.+++  |++. +|++++.||.|++|++..
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            885 69999999999999998622             23345556777675555  5677 999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-34  Score=269.98  Aligned_cols=242  Identities=21%  Similarity=0.269  Sum_probs=206.5

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+.+|.+.|.+++|+  +.+|++++.||.|++||+.+++...                                .+.+
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------~~~~   53 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------SIQV   53 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEEC
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------------------EEec
Confidence            45678999999999999  8899999999999999998765322                                2344


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      |...|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ .|++++.||.|++||++...   
T Consensus        54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---  130 (814)
T 3mkq_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---  130 (814)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---
T ss_pred             CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999999997542   


Q ss_pred             ccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccce--EEEEEEe--CCCEEEEeeCCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL--AVLCLAA--AGKLVFSGSADK  306 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~dg  306 (368)
                        .....+..|...|.+++|+| +++.|++++.||.|++||+++..........+..  ...+++|  ++.+|++|+.||
T Consensus       131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred             --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence              24566778899999999999 8899999999999999999876665444444333  4466667  899999999999


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|++||+.+.  ..+..+.+|...|++++|+|++.            .+++|+.||.|++|
T Consensus       209 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~------------~l~~~~~dg~v~vw  255 (814)
T 3mkq_A          209 TIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLP------------IIISGSEDGTLKIW  255 (814)
T ss_dssp             EEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------EEEEEETTSCEEEE
T ss_pred             EEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC------------EEEEEeCCCeEEEE
Confidence            9999999876  67888889999999999999999            45555555555555

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.2e-35  Score=253.95  Aligned_cols=252  Identities=13%  Similarity=0.128  Sum_probs=188.7

Q ss_pred             cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           77 GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ....|...|++|+|+   +++|++|+.||.|+|||+.+++......                              +.+|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~------------------------------~~gH  163 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK------------------------------GIGA  163 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC------------------------------CCSS
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE------------------------------ccCC
Confidence            345688899999997   5689999999999999998765322211                              2349


Q ss_pred             CCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325          154 SDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       154 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      .+.|++++|+| ++++|++|+.||+|++||++++........  +...+.+++|+|++ +|++|+.||.|++||++..  
T Consensus       164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--  241 (435)
T 4e54_B          164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--  241 (435)
T ss_dssp             SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--
Confidence            99999999998 688999999999999999987654443333  33467889999999 9999999999999998743  


Q ss_pred             CcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccc--eeeeccceEEEE--EEeCCCEEEEeeC
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHG--GVLKGHKLAVLC--LAAAGKLVFSGSA  304 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~--~~~~~~~l~~~~~  304 (368)
                           ....+..|...|.+++|+|+++ +|++|+.|+.|++||+++.....  ....+|...|.+  |+|++++|++|+.
T Consensus       242 -----~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          242 -----ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             -----BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             -----eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence                 3556778999999999999876 78899999999999998754432  233567777755  5578999999999


Q ss_pred             CCeEEEEecCCCceeeeEeeecccc------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTG------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ||.|++||+...  .....+..|..      .+....|+|++..++++........++++..++.|++|
T Consensus       317 D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw  383 (435)
T 4e54_B          317 KSEIRVYSASQW--DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF  383 (435)
T ss_dssp             SSCEEEEESSSS--SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred             CCEEEEEECCCC--ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence            999999999876  33444444432      23455677777766554322222234455555666665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-33  Score=236.01  Aligned_cols=258  Identities=16%  Similarity=0.238  Sum_probs=212.6

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCC-
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQD-  101 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d-  101 (368)
                      -++...+.+..+.+|.+.|.+++|+++  +|++++.||.|++||+.+.  ...+. +...|.+++|+  +.++++++.+ 
T Consensus        59 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~  137 (369)
T 3zwl_B           59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNV  137 (369)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCB
T ss_pred             EeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCc
Confidence            345677888899999999999999854  9999999999999998743  33444 88899999998  7899999999 


Q ss_pred             ----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC--CEeEEEEcCCCCEEEEEeCC
Q 047325          102 ----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQDCGLLYTASWD  175 (368)
Q Consensus       102 ----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  175 (368)
                          |.|++||+............                     .......+..|..  .+.+++|+|++++|++++.|
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  196 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKV---------------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD  196 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEE---------------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred             cCCCCEEEEEEecCCccceeeccc---------------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence                99999999877543222111                     1112223344665  99999999999999999999


Q ss_pred             CcEEEEEccC-CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          176 RTFKVWRISD-SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       176 ~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      |.|++||+++ ++.+..+..|...|.+++|+|++ +|++++.|+.|++||++...      ....+. +...+.+++|+|
T Consensus       197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~-~~~~~~~~~~~~  269 (369)
T 3zwl_B          197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ------VLKKYE-TDCPLNTAVITP  269 (369)
T ss_dssp             SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------EEEEEE-CSSCEEEEEECS
T ss_pred             CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc------eeeeec-CCCCceeEEecC
Confidence            9999999998 78899999999999999999999 99999999999999998752      233333 678899999999


Q ss_pred             CCCEEEEecCCC--------------cEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCC
Q 047325          254 SRSIVYCGSSDG--------------LVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       254 ~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      +++++++++.++              .+++||..+.... ..+.+|...+.++  +|++++|++++.||.|++|+++..
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch-hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999988              8999999887655 5667787777554  568999999999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=267.73  Aligned_cols=246  Identities=18%  Similarity=0.251  Sum_probs=199.6

Q ss_pred             ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ..+.+|.+.|++++|+  +++|++|+.||.|++||+.++...                              ....+.+|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------------------------~~~~l~~h   52 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------LIDTLTGH   52 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------------------------------EEEEECCC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------------------------------cceeccCC
Confidence            3568999999999998  789999999999999999744211                              12234459


Q ss_pred             CCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCC
Q 047325          154 SDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       154 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~  226 (368)
                      ...|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+++|+.||.|++||++.
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            999999999987  8999999999999999999987  77788889999999999998  7 999999999999999987


Q ss_pred             CCCCcccccceeeccccccEEEEEEcC-------------CCCEEEEecCCCcEEEEeCCCcc---ccceeeeccceEEE
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSS-------------SRSIVYCGSSDGLVNFWEREKQL---SHGGVLKGHKLAVL  290 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~  290 (368)
                      ...    ........|...|.+++|+|             ++++|++|+.||.|++||+++..   .....+.+|...+.
T Consensus       133 ~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (753)
T ss_dssp             SSC----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             CCC----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence            532    23445667889999999999             58999999999999999998654   23345567887775


Q ss_pred             EE--EeC---CCEEEEeeCCCeEEEEecCCCcee---eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325          291 CL--AAA---GKLVFSGSADKTICVWRRDGAIHT---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK  362 (368)
Q Consensus       291 ~~--~~~---~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~  362 (368)
                      ++  +|+   +++|++|+.||.|++||+......   .......|...|++++|+|++.            .+++|+.||
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~------------~l~s~s~Dg  276 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN------------VLALSGGDN  276 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC------------CEEEECSSS
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC------------EEEEEcCCC
Confidence            55  456   889999999999999999875322   3334456889999999999999            567777777


Q ss_pred             ccccC
Q 047325          363 SDDDV  367 (368)
Q Consensus       363 ~v~i~  367 (368)
                      .|++|
T Consensus       277 ~I~vw  281 (753)
T 3jro_A          277 KVTLW  281 (753)
T ss_dssp             CEECC
T ss_pred             EEEEE
Confidence            77777

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.5e-34  Score=246.85  Aligned_cols=250  Identities=16%  Similarity=0.257  Sum_probs=199.0

Q ss_pred             eeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEe--C-CEEEEEeC
Q 047325           36 LIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVIS--G-EKIFTGHQ  100 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~--~-~~l~s~~~  100 (368)
                      .+..+.+|.+.|++++|++   ++|++|+.||+|++||+...         ...+.+|...|.+++|+  + ++|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            4456789999999999976   39999999999999998643         55678999999999998  4 58999999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ||.|++||+++++.......                              .+|...|.+++|+|++++|++++.|+.|++
T Consensus       153 dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGP------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV  202 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECT------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCCccEEEec------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence            99999999987754332210                              238899999999999999999999999999


Q ss_pred             EEccCCeEEEEe-ecCCCc-eEEEEeCCCC-eEEEE---cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC
Q 047325          181 WRISDSKCLESV-SAHDDA-VNSVVSSSEG-LIFTG---SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       181 wd~~~~~~~~~~-~~~~~~-v~~~~~~~~~-~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                      ||+++++.+..+ ..|... +.++.|+|++ ++++|   +.|+.|++||++....    ........+...+.+++|+|+
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSSCEEEEEETT
T ss_pred             EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCceeEEEEcCC
Confidence            999999999988 678765 8999999999 77777   7899999999987532    111222356678999999999


Q ss_pred             CCEEE-EecCCCcEEEEeCCCccccceeeecc--ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          255 RSIVY-CGSSDGLVNFWEREKQLSHGGVLKGH--KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       255 ~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                      +++|+ +|+.||.|++||++++......+..|  ...+  ++++|++.++++  .++.+++|++.....+++
T Consensus       279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i  348 (402)
T 2aq5_A          279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPI  348 (402)
T ss_dssp             TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEEEE
Confidence            99886 56679999999999876423333333  3444  566677777764  567999999987644444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.4e-34  Score=248.84  Aligned_cols=255  Identities=17%  Similarity=0.201  Sum_probs=201.6

Q ss_pred             cccCCCCCeeEEEEeC---CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           77 GFKASSGLVKAIVISG---EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      ....|.+.|++++|+.   .+|++++.||.|++|++...........                      .......+.+|
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~----------------------~~~~~~~~~~h  180 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG----------------------ECQPDLRLRGH  180 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC----------------------CCCCSEEEECC
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc----------------------cCCCcEEecCC
Confidence            4567999999999983   4899999999999999976422111000                      01123345569


Q ss_pred             CCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeE-------EEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEE
Q 047325          154 SDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKC-------LESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWK  223 (368)
Q Consensus       154 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d  223 (368)
                      ...|.+++|+|++. +|++|+.||.|++||+.++..       ...+..|...|.+++|+|+ + .+++++.||.|++||
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            99999999999988 999999999999999987322       4566789999999999994 4 899999999999999


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEE
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLV  299 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l  299 (368)
                      ++....   ......+..|...|++++|+|+++ +|++|+.||.|++||+++.......+..|...+.++.  |++ .+|
T Consensus       261 ~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          261 TRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             TTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             CCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence            986531   124455668899999999999887 6889999999999999986666677777887776555  566 479


Q ss_pred             EEeeCCCeEEEEecCCCc------------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          300 FSGSADKTICVWRRDGAI------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       300 ~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++++.||.|++||+....            ...+..+.+|...|++++|+|++.           |++++++.|+.|++|
T Consensus       338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----------~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-----------WIICSVSEDNIMQVW  406 (430)
T ss_dssp             EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-----------TEEEEEETTSEEEEE
T ss_pred             EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-----------CEEEEEECCCCEEEe
Confidence            999999999999997621            256677788999999999999998           256677777777776

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=243.03  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=185.9

Q ss_pred             cccCCCCCeeEEEEe--CC-EEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           77 GFKASSGLVKAIVIS--GE-KIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~-~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      .+.+|...|.+++|+  +. ++++|+.   ||.|++||+.+++.....                               .
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------------------------~   61 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------------------------E   61 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------------------------E
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------------------------e
Confidence            456799999999998  44 4456665   999999999876532211                               1


Q ss_pred             eecCCCEeEEEEcCC---CCEEEEEeCCCcEEEEEccCCe-EEEEeecCCCceEEEE------eCCCC-eEEEEcCCCeE
Q 047325          151 IRHSDAVSCMSLDQD---CGLLYTASWDRTFKVWRISDSK-CLESVSAHDDAVNSVV------SSSEG-LIFTGSADGTV  219 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~-~l~~~~~dg~i  219 (368)
                      .+|...|.+++|+|+   +++|++++.||.|++||+.+++ .+..+.+|...|.++.      |+|++ .|++++.||.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            248999999999998   6999999999999999999988 8889999999999994      56788 99999999999


Q ss_pred             EEEEcCCCCCCcccccceeecccc----ccEEEEE----EcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--
Q 047325          220 KVWKREQHGKGTKHSLAQTLLKQE----CAVTALV----VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--  289 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~~~~----~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--  289 (368)
                      ++||++....     ....+..+.    ..+.+++    |+|++++|++++.||.|++||+++....  ....|...+  
T Consensus       142 ~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~  214 (357)
T 3i2n_A          142 KVWDPRQKDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS  214 (357)
T ss_dssp             EEECTTSCSS-----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred             EEEeCCCCCC-----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence            9999987632     233343333    3788888    7889999999999999999999987664  334455555  


Q ss_pred             EEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeE-----eeeccccCeeEEEEecCCe-eeecC--CcceEEEEEee
Q 047325          290 LCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLS-----VLTGHTGPVKCLAVEEDRD-SSSST--SSCAQRWIVYS  357 (368)
Q Consensus       290 ~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~-~~~~~--~~~~~~w~l~s  357 (368)
                      ++++|   ++.+|++|+.||.|++||+...  ....     .+.+|...|++++|+|++. +++++  ++.+++|.+..
T Consensus       215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEcCCCCCCCCEEEEECCCCeEEEEeCcCC--CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            45556   7899999999999999998764  2222     3348999999999999998 44443  23455555543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-33  Score=241.55  Aligned_cols=204  Identities=15%  Similarity=0.175  Sum_probs=167.1

Q ss_pred             eecccCCCCCeeEEEEe--C-CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325           75 FCGFKASSGLVKAIVIS--G-EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI  151 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (368)
                      ...+.+|...|.+++|+  + ++|++|+.||.|++||+.+++.......                              .
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~  115 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------------------------------M  115 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------------------------------C
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------------------------------C
Confidence            34567899999999998  4 7999999999999999987654322211                              2


Q ss_pred             ecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecC---CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCC
Q 047325          152 RHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAH---DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       152 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~  226 (368)
                      +|...|.+++|+| ++++|++++.|+.|++||+.+ +.+..+..+   ...|.+++|+|++ .|++++.|+.|++||++.
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  194 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG  194 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence            3899999999999 778999999999999999985 555555544   4789999999999 999999999999999953


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccc--ceeeeccceEEEE--EEe-CCCEEE
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSH--GGVLKGHKLAVLC--LAA-AGKLVF  300 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~--~~~-~~~~l~  300 (368)
                      .       ....+..|...|.+++|+|+++ +|++++.|+.|++||+++....  .....+|...+.+  ++| ++++|+
T Consensus       195 ~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  267 (383)
T 3ei3_B          195 H-------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL  267 (383)
T ss_dssp             C-------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred             C-------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence            2       5667778999999999999999 9999999999999999873211  1122257666654  556 789999


Q ss_pred             EeeCCCeEEEEecCCC
Q 047325          301 SGSADKTICVWRRDGA  316 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~  316 (368)
                      +++.|+.|++||+.+.
T Consensus       268 ~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEESSSEEEEEETTBT
T ss_pred             EEcCCCcEEEEECCCC
Confidence            9999999999999765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1e-34  Score=248.95  Aligned_cols=226  Identities=11%  Similarity=0.073  Sum_probs=164.8

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-------
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-------  164 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------  164 (368)
                      +.+|++++.|++|++||.++++......                           ...+.+|.+.|++++|+|       
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~---------------------------~~~~~gH~~~v~~v~~~p~~~~~~~  153 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHV---------------------------LGGKSGHHNFVNDIDIADVYSADNR  153 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEE---------------------------ECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeee---------------------------ecccCCCCCceEEEEEccccccccC
Confidence            4579999999999999998775322111                           112345999999999997       


Q ss_pred             -CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccc-------
Q 047325          165 -DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHS-------  234 (368)
Q Consensus       165 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-------  234 (368)
                       ++++|++++.|++|+|||+.++.++..+..|...+.+++|+|++  +|++++.|+.|++||++.........       
T Consensus       154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence             78899999999999999999999888888999999999999987  79999999999999998754311100       


Q ss_pred             ------------cceeeccccccEEEEEEc-CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE------------
Q 047325          235 ------------LAQTLLKQECAVTALVVS-SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV------------  289 (368)
Q Consensus       235 ------------~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------  289 (368)
                                  ......+|...+.++.|+ |+++.|++++.|+.+++||+...... ..+..|...+            
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~  312 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-NEISDSTMKLGPKNLLPNVQGI  312 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-ceEeeecCccccEEEccccccc
Confidence                        011123566778888886 79999999999999999998765433 1222222211            


Q ss_pred             --------EEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          290 --------LCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       290 --------~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                              ..+.+  ++.++++|+.||.|++||+.++  .....+.+|..+|++++|+|||++||+++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--~~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--DSNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--TCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--cEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence                    12222  3457788899999999999876  45566778999999999999999555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.5e-33  Score=230.33  Aligned_cols=248  Identities=20%  Similarity=0.301  Sum_probs=203.6

Q ss_pred             ccCCCceeeec--cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325           30 NLPQNGLIGSL--VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGK  103 (368)
Q Consensus        30 ~~~~~~~~~~~--~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~  103 (368)
                      +...++.+..+  .+|...|++++|+++  +|++|+.||+|++||+.+  .+..+.+|...+.++.+.+..+++++.++.
T Consensus        51 d~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~  130 (318)
T 4ggc_A           51 SASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH  130 (318)
T ss_dssp             ETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSE
T ss_pred             ECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCc
Confidence            45566666655  477888999999755  999999999999999875  456788999999999999999999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI  183 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  183 (368)
                      +++|+.......                               ...+.+|...+..+.+.+++++|++++.|+.|++||+
T Consensus       131 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          131 IHHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EEEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             eEeeecCCCcee-------------------------------EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            999998765432                               2234459999999999999999999999999999999


Q ss_pred             cCCeE----EEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325          184 SDSKC----LESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR  255 (368)
Q Consensus       184 ~~~~~----~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (368)
                      ++++.    ......+...|.++.+.|++    .+++++.++.|++||.+...       ......+...+..+.|+|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~~~~~  252 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-------CLSAVDAHSQVCSILWSPHY  252 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-------EEEEEECSSCEEEEEEETTT
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-------ccccccceeeeeeeeecccc
Confidence            87653    34555678899999999877    34567889999999998652       23344567789999999999


Q ss_pred             CEEEEe--cCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCC
Q 047325          256 SIVYCG--SSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       256 ~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      +.++++  +.|+.|++||+++++.. ..+.+|...|.++  +|++++|++|+.||+|+|||+...
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cceEEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            987765  47999999999987665 5678898888655  468999999999999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=244.96  Aligned_cols=228  Identities=13%  Similarity=0.111  Sum_probs=180.7

Q ss_pred             CCCCeeEEEEe--CCEE-EEEeCCCeEEEEeec--CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           81 SSGLVKAIVIS--GEKI-FTGHQDGKIRVWKIS--PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      |.+.|.+++|+  +.+| ++++.||.|++||+.  +++......                              ...|..
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------~~~~~~  150 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------RFCFSK  150 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------EEECSS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------cccCCC
Confidence            44479999998  6775 899999999999998  554222111                              013778


Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----EeecCCCceEEEEeCCC---C-eEEEEcCCCeEEEEEcCCC
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----SVSAHDDAVNSVVSSSE---G-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      .|.+++|+|++++|++++.+|.|++|++.+++...    .+.+|...|.+++|+|+   + +|++++.|+.|++||++..
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999998877554    77889999999999999   8 9999999999999999865


Q ss_pred             CCCccccccee-eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec----------------------
Q 047325          228 GKGTKHSLAQT-LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG----------------------  284 (368)
Q Consensus       228 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------  284 (368)
                      .      .... ..+|...|.+++|+ ++++|++++.|+.|++||+++++........                      
T Consensus       231 ~------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (450)
T 2vdu_B          231 F------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN  303 (450)
T ss_dssp             T------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred             c------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence            3      2333 55789999999999 9999999999999999999987654322211                      


Q ss_pred             --cceEE--EEEEeCCCEEEEee-CCCeEEEEec--CC-CceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          285 --HKLAV--LCLAAAGKLVFSGS-ADKTICVWRR--DG-AIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       285 --~~~~~--~~~~~~~~~l~~~~-~dg~i~iw~~--~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                        ....+  +++++++++|++++ .|+.|++|++  .. .....+..+..| ..|.+++|+|++.+++.+
T Consensus       304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~  372 (450)
T 2vdu_B          304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLD  372 (450)
T ss_dssp             -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEEC
T ss_pred             ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEe
Confidence              11223  45667899999998 8999999999  32 233667777777 889999999976655543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=246.68  Aligned_cols=248  Identities=14%  Similarity=0.231  Sum_probs=187.1

Q ss_pred             cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC--
Q 047325           79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS--  154 (368)
Q Consensus        79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  154 (368)
                      ..+.+.|.+++|+  +++|++|+.||.|++||+.+++.........                     ......+.+|.  
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~   83 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE---------------------YNVYSTFQSHEPE   83 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC---------------------EEEEEEEECCCCE
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc---------------------eeEeccccccccc
Confidence            3467899999998  7899999999999999998765321111100                     00122344576  


Q ss_pred             ----------CCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeEE---------------------------------
Q 047325          155 ----------DAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCL---------------------------------  189 (368)
Q Consensus       155 ----------~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~---------------------------------  189 (368)
                                ..|++++|+|++  .+|++++.|+.|++||+.+++..                                 
T Consensus        84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  163 (447)
T 3dw8_B           84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM  163 (447)
T ss_dssp             EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred             ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence                      889999999998  79999999999999999765432                                 


Q ss_pred             ------EE-eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-------eeccccccEEEEEEcCC
Q 047325          190 ------ES-VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-------TLLKQECAVTALVVSSS  254 (368)
Q Consensus       190 ------~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~  254 (368)
                            .. ..+|...|.+++|+|++ +|++| .|+.|++||++....     ...       .+..|...|.+++|+|+
T Consensus       164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~  237 (447)
T 3dw8_B          164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR-----SFNIVDIKPANMEELTEVITAAEFHPN  237 (447)
T ss_dssp             EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE-----EEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred             eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc-----eeeeeecccccccccCcceEEEEECCC
Confidence                  12 35799999999999999 88888 899999999984321     111       35678899999999999


Q ss_pred             C-CEEEEecCCCcEEEEeCCCcccc---ceeeeccce------------EE--EEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          255 R-SIVYCGSSDGLVNFWEREKQLSH---GGVLKGHKL------------AV--LCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       255 ~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~------------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      + ++|++|+.||.|++||++++...   ...+..|..            .+  ++++|++++|++++. +.|++||+...
T Consensus       238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~  316 (447)
T 3dw8_B          238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME  316 (447)
T ss_dssp             CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred             CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence            8 99999999999999999986641   345555543            44  556678999999999 99999999762


Q ss_pred             ceeeeEeeeccccC---------------eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          317 IHTCLSVLTGHTGP---------------VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       317 ~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                       ..++..+.+|...               +..++|+|++.            .|++|+.||.|++|
T Consensus       317 -~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~------------~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          317 -NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS------------VVMTGSYNNFFRMF  369 (447)
T ss_dssp             -SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS------------EEEEECSTTEEEEE
T ss_pred             -ccccceeeccccccccccccccccccccceEEEECCCCC------------EEEEeccCCEEEEE
Confidence             2567778778642               33499999999            56677777777766

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.8e-33  Score=233.65  Aligned_cols=246  Identities=14%  Similarity=0.163  Sum_probs=189.9

Q ss_pred             cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                      ...+|.+.|.+++|+  +++|++++.||.|++|++.++....                             ......+|.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----------------------------~~~~~~~~~   56 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------------------------DLLQSLRYK   56 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------------------------EEEEEEECS
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----------------------------cceeeeecC
Confidence            345899999999998  7899999999999999998765211                             011233599


Q ss_pred             CCEeEEEEcCCCC-EEEEEeCCCcEEEEEc-cCCeEEEEeec--CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC
Q 047325          155 DAVSCMSLDQDCG-LLYTASWDRTFKVWRI-SDSKCLESVSA--HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       155 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      ..|.+++|+|+++ +|++++.||.|++||+ .+++. ..+.+  |...|.+++|+|...+++++.|+.|++||++.....
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence            9999999999999 9999999999999999 77765 67778  999999999999339999999999999999751000


Q ss_pred             c---ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-cccc-ceeeeccceEE--EEEEe-CCCEEEEe
Q 047325          231 T---KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSH-GGVLKGHKLAV--LCLAA-AGKLVFSG  302 (368)
Q Consensus       231 ~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~--~~~~~-~~~~l~~~  302 (368)
                      .   ...+...+. +...+.+++|+|++  +++++.|+.|++||+++ .... ......|...+  ++++| +++++++|
T Consensus       136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             cccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence            0   011233333 78899999999887  99999999999999987 4432 22333455555  45567 88999999


Q ss_pred             eCCCeEEEEecCCC--c--eeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          303 SADKTICVWRRDGA--I--HTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       303 ~~dg~i~iw~~~~~--~--~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.||.|++|+++..  .  ......+..|..         +|++++|+|++.+            |++|+.||.|++|
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~------------l~~~~~dg~i~vw  278 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF------------LYTAGSDGIISCW  278 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC------------EEEEETTSCEEEE
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE------------EEEecCCceEEEE
Confidence            99999999999764  1  245666777755         9999999999994            4555555555554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.2e-32  Score=222.76  Aligned_cols=285  Identities=13%  Similarity=0.098  Sum_probs=193.2

Q ss_pred             CceeeeccCcCCc----EEEEEec----CC-EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEeC---CEEE
Q 047325           34 NGLIGSLVREEGH----IYSLAAS----KD-LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVISG---EKIF   96 (368)
Q Consensus        34 ~~~~~~~~~h~~~----i~~~~~~----~~-~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~~---~~l~   96 (368)
                      -+++..++.-.+.    +.++-|.    .+ -++++++ ..|++|+....     +..++.|..+|..+.+.+   +.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC  103 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence            3556666655544    4444443    22 5666664 68999997754     567788999999999873   2222


Q ss_pred             EEeCCCe-EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--
Q 047325           97 TGHQDGK-IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--  173 (368)
Q Consensus        97 s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--  173 (368)
                      .+-.+=. -.++.+.-...-..                          ......-.+|...|..+   ++++++.+++  
T Consensus       104 ~~~~~~~~~~v~sla~spd~~~--------------------------~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g  154 (356)
T 2w18_A          104 VALGNLEIREIRALFCSSDDES--------------------------EKQVLLKSGNIKAVLGL---TKRRLVSSSGTL  154 (356)
T ss_dssp             EEECSSSEEEEEEECC--------------------------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSS
T ss_pred             eeeccccccceEEEEECCCccc--------------------------cccEEEeCCCeEEEEec---CCCcEEEecccC
Confidence            2221111 11121111000000                          00000112244445444   5665555543  


Q ss_pred             CCCcEEEEEc-cCCeEEEEeecCCCceEEEEeCC---CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc---cc
Q 047325          174 WDRTFKVWRI-SDSKCLESVSAHDDAVNSVVSSS---EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE---CA  245 (368)
Q Consensus       174 ~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~  245 (368)
                      .|+.|++|++ .+++.+..+..|...+..++|++   ++ .|++++.|++|++||++++.      .+..+.+|.   ..
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk------~l~tL~g~~~~v~~  228 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ------LLKKMHIDDSYQAS  228 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC------EEEEEECCC---CC
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc------EEEEEcCCCcceee
Confidence            5999999999 55888899999999999999988   55 99999999999999998763      455555433   46


Q ss_pred             EEEEEEcCCCCEE------------EEecCCCcEEEEeCCCcccccee----eeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325          246 VTALVVSSSRSIV------------YCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       246 i~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~  309 (368)
                      +.+++|+|+++++            ++|+.|++|++||..+++.....    ..+|....++.+.++.++++|+.|++|+
T Consensus       229 v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIk  308 (356)
T 2w18_A          229 VCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIA  308 (356)
T ss_dssp             CEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEE
T ss_pred             eEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEE
Confidence            7788999999876            56788999999999987654322    2366656666677789999999999999


Q ss_pred             EEecCCCceeeeEeeeccccCee-EEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          310 VWRRDGAIHTCLSVLTGHTGPVK-CLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      |||+.++  +++.++.+|...+. .++|+|||+            .|++|+.|++||||+
T Consensus       309 IWDl~tG--k~l~tL~gH~~~vvs~vafSPDG~------------~LaSGS~D~TIklWd  354 (356)
T 2w18_A          309 IWDLLLG--QCTALLPPVSDQHWSFVKWSGTDS------------HLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEETTTC--SEEEEECCC--CCCCEEEECSSSS------------EEEEECTTSCEEEEE
T ss_pred             EEECCCC--cEEEEecCCCCCeEEEEEECCCCC------------EEEEEECCCcEEEec
Confidence            9999887  78888999988655 689999999            799999999999994

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=231.84  Aligned_cols=277  Identities=16%  Similarity=0.173  Sum_probs=184.2

Q ss_pred             cCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee-cccCCCCCeeEEEEe-----CCEEEEEeCCCeEEEEeecC
Q 047325           41 VREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS-----GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        41 ~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~~  111 (368)
                      .+|.+.|.+++|++   .+|++++.||.|++||+..... ....+...+.++.+.     +.++++++.||.|++||+.+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            46999999999976   3899999999999999875422 233477888999887     34899999999999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCe-EE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSK-CL  189 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~  189 (368)
                      ++...                                .+.+|...|.+++|+|+++ +|++++.||.|++||++++. ++
T Consensus       176 ~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          176 GSCSH--------------------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             SCCCE--------------------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             cceee--------------------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            65332                                2234889999999999988 58999999999999998765 33


Q ss_pred             EEe---------------ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          190 ESV---------------SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       190 ~~~---------------~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      ..+               ..|...|.+++|+|++ +|++++.||.|++||++.......... .........+.......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  302 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-KVCNNSKKGLKFTVSCG  302 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-CCCCCCSSCCCCEECCS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-cccccccccceeEEecC
Confidence            333               5688899999999999 999999999999999987643111100 00111111222222233


Q ss_pred             CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV  331 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v  331 (368)
                      ....+++++.++.|++||+.++... ..+.+|...+  ++++|++++|++|+.||.|++||++..  +.+.....+.   
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~---  376 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY--EPVPDDDETT---  376 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTTCCEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------
T ss_pred             CCceEEEEecCCEEEEEECcCCcce-eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC--CccCCCCceE---
Confidence            4566777788999999999987665 5666787776  556678999999999999999999876  3333322221   


Q ss_pred             eEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          332 KCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       332 ~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ....+.+....           .+.+++.|+.+++|
T Consensus       377 ~~~~~~~~~~~-----------~~~~~~~~~~~~~W  401 (408)
T 4a11_B          377 TKSQLNPAFED-----------AWSSSDEEGGTSAW  401 (408)
T ss_dssp             ------------------------------------
T ss_pred             eccccccccce-----------eecccCccCceeec
Confidence            12233333221           35567778888888

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-33  Score=240.29  Aligned_cols=248  Identities=13%  Similarity=0.097  Sum_probs=197.5

Q ss_pred             CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCC-----CeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325           42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSG-----LVKAIVIS--GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      .|...|.+++|+|+  +||+++.||+|++||....+..+. |..     .|.+++|+  |++|++|+.||+|++||+.++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            55888999999876  999999999999999777666666 665     49999998  899999999999999999876


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeee----eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW----IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      ........                         ....+    .+|.+.|.+++|+|++  +++++.|+.|++||+..++.
T Consensus       162 ~l~~~~~i-------------------------~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          162 SENTPEFY-------------------------FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             TTTCCCCE-------------------------EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             ccccccce-------------------------eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence            42100000                         00011    2378899999999998  88899999999999988773


Q ss_pred             ---EEEe-ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE--cCCCCEEEEec
Q 047325          189 ---LESV-SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV--SSSRSIVYCGS  262 (368)
Q Consensus       189 ---~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~  262 (368)
                         ..++ .+|...|.+++|+ +..|++++ +++|++||+...      .......+|...+..++|  +|++..|++++
T Consensus       215 ~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          215 QPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNY------SISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTT------EEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             ccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCC------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence               3556 4788899999999 45888887 699999999865      122333379999999999  99999999999


Q ss_pred             CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      +||+ ++|....               ..++|++..+++.  |+++++|+.....   +..+.+ ...|.+++|+|||+.
T Consensus       287 edG~-klw~~d~---------------~~~spd~~l~a~~--d~~v~lW~~~g~~---l~~~~~-~~~I~~va~SPdG~~  344 (588)
T 2j04_A          287 KTSY-KVLLEDE---------------LHVTADNIIAPYL--EKKFKKWSTIWNE---FNNYET-TLVIHGISLSPDGYS  344 (588)
T ss_dssp             SCEE-EEEESSS---------------EEEECCCSSHHHH--HHHHHHTTTTTTS---SSSSCC-EEEEEEEEECTTSSE
T ss_pred             CCCC-EEEeecc---------------EEECCCceEEEEc--CCEEEEEECCCCc---eeeecc-ceEEEEEEECCCCCE
Confidence            9999 9999871               4488999888775  9999999875542   334444 677999999999997


Q ss_pred             eecCC
Q 047325          343 SSSTS  347 (368)
Q Consensus       343 ~~~~~  347 (368)
                      +|+++
T Consensus       345 lA~~~  349 (588)
T 2j04_A          345 IAIVY  349 (588)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.6e-31  Score=228.03  Aligned_cols=277  Identities=12%  Similarity=0.112  Sum_probs=209.5

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--ee-----cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FC-----GFKASSGLVKAIVIS--GEKIFTGHQDGK  103 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~  103 (368)
                      ..+..+..+ ..+.+++|+++  ++++++.|+.|++||+.+.  ..     .+.+|...|.+++|+  +.++++++.|+.
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            344444444 34558888754  8888889999999998743  22     355889999999996  778999999999


Q ss_pred             EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEE
Q 047325          104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWR  182 (368)
Q Consensus       104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  182 (368)
                      |++||+++++....                                +..|...+.+++|+|+++.+++++ .|+.|++||
T Consensus       193 v~~~d~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          193 VHVFDLKTLAYKAT--------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             EEEEETTTCCEEEE--------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCceEEEE--------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            99999987653222                                223788999999999999885554 799999999


Q ss_pred             ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc--------CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS--------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                      +++++.+..+..+ ..+.+++|+|++ .+++++        .|+.|++||++...      . .....+...+.+++|+|
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~------~-~~~~~~~~~~~~~~~~~  312 (433)
T 3bws_A          241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK------L-IDTIGPPGNKRHIVSGN  312 (433)
T ss_dssp             TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE------E-EEEEEEEECEEEEEECS
T ss_pred             CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc------E-EeeccCCCCcceEEECC
Confidence            9999998888754 558999999999 777777        58899999998652      2 22234566789999999


Q ss_pred             CCCEE-EEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC---------------CCeEEEEecCCCc
Q 047325          254 SRSIV-YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA---------------DKTICVWRRDGAI  317 (368)
Q Consensus       254 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iw~~~~~~  317 (368)
                      +++.+ ++++.++.|++||+++++.............++++|++++|++++.               ||.|++||+.+. 
T Consensus       313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-  391 (433)
T 3bws_A          313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-  391 (433)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-
T ss_pred             CCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-
Confidence            99754 6668999999999997665533333333444677788998888876               579999998876 


Q ss_pred             eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEee-CCcccccccC
Q 047325          318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYS-GSLDKSDDDV  367 (368)
Q Consensus       318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s-g~~D~~v~i~  367 (368)
                       +.+..+.. ...+.+++|+|+++.            |++ ++.|+.|++|
T Consensus       392 -~~~~~~~~-~~~~~~~~~s~dg~~------------l~~~~~~d~~i~v~  428 (433)
T 3bws_A          392 -TVKEFWEA-GNQPTGLDVSPDNRY------------LVISDFLDHQIRVY  428 (433)
T ss_dssp             -EEEEEEEC-SSSEEEEEECTTSCE------------EEEEETTTTEEEEE
T ss_pred             -cEEEEecC-CCCCceEEEcCCCCE------------EEEEECCCCeEEEE
Confidence             55666654 457999999999984            333 3457777776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-31  Score=226.75  Aligned_cols=243  Identities=16%  Similarity=0.191  Sum_probs=191.9

Q ss_pred             cceecccCCCCCeeEEEEeC-----CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccce
Q 047325           73 KEFCGFKASSGLVKAIVISG-----EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRT  147 (368)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (368)
                      +.+..+.+|...|.+++|+.     ++|++|+.||.|++||+.+.....                              .
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~------------------------------~   79 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI------------------------------P   79 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE------------------------------E
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee------------------------------E
Confidence            45667889999999999982     689999999999999998733111                              1


Q ss_pred             eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEe--CCCC-eEEEEcCCCeEEEEEc
Q 047325          148 ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS--SSEG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       148 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~dg~i~i~d~  224 (368)
                      ..+.+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  ++++ +|++++.||.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            2345599999999999999999999999999999999998776 5569999999999  8888 8999999999999999


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---eeeccceEEEEEEeCCCE---
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---VLKGHKLAVLCLAAAGKL---  298 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~---  298 (368)
                      +...      ....+..+ ..+.++.+.  ...+++++.++.+++|+++.......   ....+...+.++.++...   
T Consensus       159 ~~~~------~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          159 RSSN------PMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             SCSS------CSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             CCCc------EEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            8753      33444433 356666665  45788899999999999986543322   223456667777776655   


Q ss_pred             -EEEeeCCCeEEEEecCCCce-eeeEeeecccc------------CeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325          299 -VFSGSADKTICVWRRDGAIH-TCLSVLTGHTG------------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       299 -l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~------------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v  364 (368)
                       +++++.||.|++|+++.... ..+..+..|..            +|++++|+|++.            .|++|+.||.|
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~------------~l~s~~~dg~i  297 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG------------TLATVGSDGRF  297 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC------------CEEEEETTSCE
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC------------EEEEEccCCeE
Confidence             99999999999999987643 55667777776            799999999999            45566666666


Q ss_pred             ccC
Q 047325          365 DDV  367 (368)
Q Consensus       365 ~i~  367 (368)
                      ++|
T Consensus       298 ~iw  300 (368)
T 3mmy_A          298 SFW  300 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=8.6e-30  Score=218.74  Aligned_cols=243  Identities=14%  Similarity=0.123  Sum_probs=185.9

Q ss_pred             EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      ++++++.|+.|++||+.+.  ...+..|. .+.+++|+  ++++ ++++.|+.|++||+.+++......           
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-----------   71 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------   71 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----------
Confidence            6889999999999998743  33455554 58999998  6666 677799999999998775432221           


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-  208 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  208 (368)
                                            +...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|++ 
T Consensus        72 ----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~  128 (391)
T 1l0q_A           72 ----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK  128 (391)
T ss_dssp             ----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS
T ss_pred             ----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCC
Confidence                                  334899999999999886555 6699999999999998888754 468999999999 


Q ss_pred             eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE-EEecCCCcEEEEeCCCccccceeeeccc
Q 047325          209 LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV-YCGSSDGLVNFWEREKQLSHGGVLKGHK  286 (368)
Q Consensus       209 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~  286 (368)
                      .+ ++++.++.|++||++...      ....+.. ...+.+++|+|+++.| ++++.++.|++||++++...........
T Consensus       129 ~l~~~~~~~~~v~~~d~~~~~------~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  201 (391)
T 1l0q_A          129 KLYVTNNGDKTVSVINTVTKA------VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA  201 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE------EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE
T ss_pred             EEEEEeCCCCEEEEEECCCCc------EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCC
Confidence            55 788889999999997652      2333333 3457999999999887 6778899999999998765433222222


Q ss_pred             eEEEEEEeCCCEEEEee---CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          287 LAVLCLAAAGKLVFSGS---ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       287 ~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      ...+++++++++|++++   .++.|++||+.+.  +.+..+..|. .+.+++|+|+++.+
T Consensus       202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KITARIPVGP-DPAGIAVTPDGKKV  258 (391)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEEEEEECCS-SEEEEEECTTSSEE
T ss_pred             ccceEECCCCCEEEEEecCcCCCcEEEEECCCC--eEEEEEecCC-CccEEEEccCCCEE
Confidence            23356777899998888   6899999999876  5566666654 57899999999854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=228.54  Aligned_cols=201  Identities=13%  Similarity=0.131  Sum_probs=162.7

Q ss_pred             eecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEcc--CCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325          151 IRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRIS--DSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR  224 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~  224 (368)
                      .+|.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|++ +|++++.+|.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            3577889999999999996 889899999999999  888888876  567899999999999 9999999999999999


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCC---CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEE
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSS---RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVF  300 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  300 (368)
                      .......  .....+.+|...|.+++|+|+   +++|++++.|+.|++||++++........+|...+.++.+ ++++|+
T Consensus       179 ~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~  256 (450)
T 2vdu_B          179 NSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL  256 (450)
T ss_dssp             TSCCCSS--CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred             CCccccc--ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence            8653211  023356678899999999999   9999999999999999999877665556678887765555 799999


Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeec-------------------------cccCeeEEEEecCCeeeecC---CcceEE
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTG-------------------------HTGPVKCLAVEEDRDSSSST---SSCAQR  352 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------h~~~v~~l~~~~~~~~~~~~---~~~~~~  352 (368)
                      +|+.|+.|++||+.++  +.+..+..                         ....|.+++|+|++.+++++   ++.+++
T Consensus       257 s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII  334 (450)
T ss_dssp             EEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred             EEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence            9999999999999876  44454442                         23569999999999966544   334555


Q ss_pred             EEE
Q 047325          353 WIV  355 (368)
Q Consensus       353 w~l  355 (368)
                      |.+
T Consensus       335 w~~  337 (450)
T 2vdu_B          335 LEM  337 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-31  Score=220.86  Aligned_cols=231  Identities=13%  Similarity=0.077  Sum_probs=174.3

Q ss_pred             CcEEEEEecCCEEEEccCCCcEEEEcCCcce-----------ecc-cCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325           45 GHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-----------CGF-KASSGLVKAIVIS----GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        45 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~  108 (368)
                      ..|.++.+++. +++|+.|++|++|+.....           ..+ ..|...|.+++++    ++++++++.||+|++||
T Consensus        77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred             CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence            45666677777 9999999999999865332           222 3566889999986    57999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      +++++.......                               .|...|++++|+|++.+|++|+.||.|++||+++++.
T Consensus       156 ~~~~~~~~~~~~-------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          156 YEDDSQYIVHSA-------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SSSSCEEEEECC-------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCCcEEEEEec-------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            987764221111                               1566799999999999999999999999999999988


Q ss_pred             E-EEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE--EEEEEcCCCCEEEEecC
Q 047325          189 L-ESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV--TALVVSSSRSIVYCGSS  263 (368)
Q Consensus       189 ~-~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~  263 (368)
                      + ..+.. |..+|.+++|+|++ +|++++ |+.|++||++......   ....+..+...+  .+++|+|++++|++++.
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---SSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---eecccccccccccceEEEECCCCCEEEEecC
Confidence            7 78888 99999999999999 888888 5599999998763311   111111233333  46999999999999888


Q ss_pred             -CCcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecC
Q 047325          264 -DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       264 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~  314 (368)
                       |+.+++|++++.......   ......++.+   +...+++++.||.+.++-..
T Consensus       281 ~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          281 ESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             TTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEEEEec
Confidence             999999999765433222   2334455666   77899999999999988543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.6e-29  Score=214.84  Aligned_cols=254  Identities=15%  Similarity=0.183  Sum_probs=192.0

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--E-EEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEE-EEeCCC
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--L-LYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIF-TGHQDG  102 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~-l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg  102 (368)
                      +..++.+..+.+|. .+.+++|+++  + +++++.|++|++||+.+.  ...+..+. .+.+++|+  +++|+ +++.|+
T Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~   96 (391)
T 1l0q_A           19 VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS   96 (391)
T ss_dssp             TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCC
Confidence            44556667777665 4899999865  4 478889999999998643  33344443 89999998  66665 455679


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVW  181 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw  181 (368)
                      .|++||+.+++.....                                 .+...+.+++|+|+++.+ ++++.++.|++|
T Consensus        97 ~v~v~d~~~~~~~~~~---------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             EEEEEETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCeEEEEE---------------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            9999999876532211                                 144578999999999977 677789999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      |+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||++...      .... ..+...+.+++|+|++++|+
T Consensus       144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS------VIDT-VKVEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------EEEE-EECSSEEEEEEECTTSSEEE
T ss_pred             ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe------EEEE-EecCCCccceEECCCCCEEE
Confidence            99999999888765 456899999999 55 677889999999998652      2222 23456789999999999999


Q ss_pred             Eec---CCCcEEEEeCCCccccceeeeccce-EEEEEEeCCCEE-EEeeCCCeEEEEecCCCceeeeEeeeccccC
Q 047325          260 CGS---SDGLVNFWEREKQLSHGGVLKGHKL-AVLCLAAAGKLV-FSGSADKTICVWRRDGAIHTCLSVLTGHTGP  330 (368)
Q Consensus       260 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~  330 (368)
                      +++   .++.|++||+++++... .+..+.. ...+++|++++| ++++.|+.|++||+.+.  +.+..+..|..+
T Consensus       216 ~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~~~~~~~~  288 (391)
T 1l0q_A          216 VTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATMAVGKNP  288 (391)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECSSSE
T ss_pred             EEecCcCCCcEEEEECCCCeEEE-EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEEEECCcCC
Confidence            888   68999999999876553 3333433 346777889877 67788999999999876  566666666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=4.3e-31  Score=226.48  Aligned_cols=218  Identities=12%  Similarity=0.151  Sum_probs=157.1

Q ss_pred             EEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe----------CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325           56 LLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS----------GEKIFTGHQDGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~----------~~~l~s~~~dg~i~vw~~~~~~~~~~~  118 (368)
                      +|++|+.|++|+|||....       +..+.+|.+.|.+++|+          +++|++|+.|++|++||+.++.+.   
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~---  179 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI---  179 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE---
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee---
Confidence            7999999999999997643       34578999999999995          579999999999999999876532   


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEe-----
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESV-----  192 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----  192 (368)
                                                   ..+.+|...|.+++|+|++. +|++++.|++|++||+++++.....     
T Consensus       180 -----------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          180 -----------------------------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             -----------------------------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             -----------------------------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence                                         22334889999999999874 8999999999999999887643322     


Q ss_pred             --------------------ecCCCceEEEEeC-CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE---
Q 047325          193 --------------------SAHDDAVNSVVSS-SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT---  247 (368)
Q Consensus       193 --------------------~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~---  247 (368)
                                          .+|...+.++.|. +++ .+++++.|+.+++||+......      ..+..+...+.   
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTMKLGPKN  304 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------C
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecCccccEE
Confidence                                3566778888876 677 9999999999999999765321      11112221121   


Q ss_pred             ---------------EEEEcC--CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeE
Q 047325          248 ---------------ALVVSS--SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       248 ---------------~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i  308 (368)
                                     ...++|  ++.++++|+.||.|++||..++.... ....|...|  ++|+|||++|++++.|| +
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~as~~G-v  382 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAIATEGS-V  382 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence                           223333  34467788999999999999876653 445566566  56677999999998776 6


Q ss_pred             EEEec
Q 047325          309 CVWRR  313 (368)
Q Consensus       309 ~iw~~  313 (368)
                      .+|++
T Consensus       383 ~lvrL  387 (393)
T 4gq1_A          383 LLTRL  387 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=4.2e-30  Score=217.24  Aligned_cols=233  Identities=12%  Similarity=0.129  Sum_probs=167.6

Q ss_pred             cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325           73 KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW  150 (368)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (368)
                      ..+.....|...|.+++|+  +.+|++|+.|| +++|++++.+....                                 
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---------------------------------   55 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---------------------------------   55 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---------------------------------
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---------------------------------
Confidence            3445568899999999998  77888888665 78999876542211                                 


Q ss_pred             eecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                       .+...+..+++.++++.+ ++++.|+.|++||+.+++++..+. +...|.++.++++..+++  .|+.|++||++...+
T Consensus        56 -~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           56 -QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWK  131 (355)
T ss_dssp             -EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCC
T ss_pred             -eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCce
Confidence             122357788888888877 567778999999999999999887 667899999998764433  478999999986511


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCcc--------------cc-ceeeeccceEEEE-
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQL--------------SH-GGVLKGHKLAVLC-  291 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~~~~-  291 (368)
                           ....+..   +...+++++  ++++.  |+.||.|++||++++.              .+ ...+.+|...+.+ 
T Consensus       132 -----~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~  201 (355)
T 3vu4_A          132 -----RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV  201 (355)
T ss_dssp             -----BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred             -----eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence                 1222222   344556666  56665  6899999999998754              11 4567788887755 


Q ss_pred             -EEeCCCEEEEeeCCCe-EEEEecCCCceeeeEeee-c-cccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          292 -LAAAGKLVFSGSADKT-ICVWRRDGAIHTCLSVLT-G-HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       292 -~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                       ++|++++|++|+.||+ |++||+.++  +++..+. + |..+|++++|+|++.+            |++|+.|++|++|
T Consensus       202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~------------l~s~s~d~~v~iw  267 (355)
T 3vu4_A          202 RLNRKSDMVATCSQDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSK------------LAVVSDKWTLHVF  267 (355)
T ss_dssp             EECTTSSEEEEEETTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCE------------EEEEETTCEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCE------------EEEEECCCEEEEE
Confidence             4568999999999998 999999876  6777787 5 9999999999999994            5555555555555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.7e-29  Score=213.28  Aligned_cols=207  Identities=17%  Similarity=0.223  Sum_probs=169.2

Q ss_pred             eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCC--CC-eEEEEcCCCeEEE
Q 047325          149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSS--EG-LIFTGSADGTVKV  221 (368)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~dg~i~i  221 (368)
                      .+.+|.+.|++++|+|++++|++++.||.|++||+.++    +....+.+|...|.+++|+|  ++ +|++++.||.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            44569999999999999999999999999999999876    56778889999999999999  46 9999999999999


Q ss_pred             EEcCCCCCC---cccccceeeccccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceee------------ec
Q 047325          222 WKREQHGKG---TKHSLAQTLLKQECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVL------------KG  284 (368)
Q Consensus       222 ~d~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~  284 (368)
                      ||++.....   ........+..|...|.+++|+|+  +++|++++.||.|++||+++........            ..
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999875321   111345667789999999999999  9999999999999999998765443221            13


Q ss_pred             cceEE--EEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC----eeeecCCcceEEEEE
Q 047325          285 HKLAV--LCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR----DSSSSTSSCAQRWIV  355 (368)
Q Consensus       285 ~~~~~--~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~~~~~w~l  355 (368)
                      |...+  ++++|+   +.++++++.|+.+.+|+........+..+.+|..+|++++|+|++    .            .|
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~------------~l  233 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ------------LI  233 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE------------EE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce------------EE
Confidence            44444  444554   889999999999988887777666688888999999999999998    6            46


Q ss_pred             eeCCcccccccC
Q 047325          356 YSGSLDKSDDDV  367 (368)
Q Consensus       356 ~sg~~D~~v~i~  367 (368)
                      ++|+.||.|++|
T Consensus       234 ~s~~~dg~i~iw  245 (351)
T 3f3f_A          234 ATGCKDGRIRIF  245 (351)
T ss_dssp             EEEETTSCEEEE
T ss_pred             EEEcCCCeEEEE
Confidence            666666666666

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.8e-29  Score=201.87  Aligned_cols=237  Identities=12%  Similarity=0.104  Sum_probs=160.2

Q ss_pred             ceeeeccCcCCcEEEEEecCC---EEEEccCCCcEE-EE----cCC----cceecccCCCCCeeEEEEeCCEEEEEe---
Q 047325           35 GLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIR-VW----KNL----KEFCGFKASSGLVKAIVISGEKIFTGH---   99 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~-iw----~~~----~~~~~~~~~~~~v~~~~~~~~~l~s~~---   99 (368)
                      +.++++.+|+.+|..+.+.++   ++..+-.+=.++ ++    ...    .+.....+|...|..+  .+..++.++   
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g  154 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTL  154 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSS
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec--CCCcEEEecccC
Confidence            577888999999999988874   222221111111 11    111    1111112333334333  444555444   


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEEEeCCC
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYTASWDR  176 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~  176 (368)
                      .|+.|++|++......                               ...+.+|...++.++|++   ++.+|++++.|+
T Consensus       155 ~d~~V~~~~~s~dG~~-------------------------------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~  203 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGG-------------------------------KENQFLMPPEETILTFAEVQGMQEALLGTTIMN  203 (356)
T ss_dssp             TTCEEEEEEECTTSCE-------------------------------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred             CCCcEEEEEECCCCce-------------------------------eeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence            4999999999543211                               112335888999999999   779999999999


Q ss_pred             cEEEEEccCCeEEEEeecCC---CceEEEEeCCCC-eE------------EEEcCCCeEEEEEcCCCCCCcccccceee-
Q 047325          177 TFKVWRISDSKCLESVSAHD---DAVNSVVSSSEG-LI------------FTGSADGTVKVWKREQHGKGTKHSLAQTL-  239 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~-~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  239 (368)
                      +|+|||+.+++++.++.+|.   ..+.+++|+|++ .+            ++|+.|++|++||..++.      ....+ 
T Consensus       204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk------~l~v~~  277 (356)
T 2w18_A          204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL------SVGVML  277 (356)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE------EEEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE------EEEEEE
Confidence            99999999999999998754   357778899999 44            567889999999997652      12111 


Q ss_pred             ----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE---EEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          240 ----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA---VLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       240 ----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                          .+|...+.+..++  +.++++++.|++|+|||+++++.. ..+.+|...   .++|+||+++|++|+.|++|+|||
T Consensus       278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT-ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE-EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE-EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence                3455444444443  778999999999999999998766 456666543   357999999999999999999998


Q ss_pred             c
Q 047325          313 R  313 (368)
Q Consensus       313 ~  313 (368)
                      +
T Consensus       355 ~  355 (356)
T 2w18_A          355 Y  355 (356)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.5e-27  Score=204.00  Aligned_cols=236  Identities=12%  Similarity=0.188  Sum_probs=185.0

Q ss_pred             eccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecC
Q 047325           39 SLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISP  111 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~  111 (368)
                      .+.+|.+.|.+++++  +.++++++.|+.|++||+.+  ....+..|...+.+++|+  +++++ +++.|+.|++||+.+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            566899999999996  44899999999999999874  355667889999999998  66664 555899999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--------CCCcEEEEEc
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--------WDRTFKVWRI  183 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~iwd~  183 (368)
                      ++......                                 +...+.+++|+|+++++++++        .|+.|++||+
T Consensus       244 ~~~~~~~~---------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          244 KLEIRKTD---------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             TEEEEECC---------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CcEEEEec---------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            65322211                                 334588999999999999988        4889999999


Q ss_pred             cCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          184 SDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      .+++.+..+. +...+.+++|+|++  .+++++.|+.|++||++...      ....+ .+...+.+++|+|++++++++
T Consensus       291 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~------~~~~~-~~~~~~~~~~~s~dg~~l~~~  362 (433)
T 3bws_A          291 DKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK------VQKSI-PVFDKPNTIALSPDGKYLYVS  362 (433)
T ss_dssp             TTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE------EEEEE-ECSSSEEEEEECTTSSEEEEE
T ss_pred             CCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc------EEEEe-cCCCCCCeEEEcCCCCEEEEE
Confidence            9998877663 55678999999998  55677899999999998542      22333 356779999999999988888


Q ss_pred             cC---------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCC
Q 047325          262 SS---------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDG  315 (368)
Q Consensus       262 ~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~  315 (368)
                      +.               ||.|++||+.+++.............++++|++++|++++. |+.|++|+++.
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            76               57999999988765543333333445677889999988775 99999998763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.5e-27  Score=205.62  Aligned_cols=265  Identities=12%  Similarity=0.023  Sum_probs=200.5

Q ss_pred             CCCcee--eeccCcCCcEEEEEec----------------CCEEEEccCC------CcEEEEcCCc-ceecccCCCCCee
Q 047325           32 PQNGLI--GSLVREEGHIYSLAAS----------------KDLLYTGSDS------KNIRVWKNLK-EFCGFKASSGLVK   86 (368)
Q Consensus        32 ~~~~~~--~~~~~h~~~i~~~~~~----------------~~~l~s~~~d------g~i~iw~~~~-~~~~~~~~~~~v~   86 (368)
                      ..++.+  ..+.+|...+..+++.                +..++.++.+      ++|++||... ....+..|...+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~  182 (415)
T 2hqs_A          103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLM  182 (415)
T ss_dssp             STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEE
T ss_pred             CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcce
Confidence            444444  4477777777766654                4566665554      7999999874 4566778999999


Q ss_pred             EEEEe--CCEEEEEeCCC---eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           87 AIVIS--GEKIFTGHQDG---KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        87 ~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      +++|+  |++|++++.|+   .|++||+.+++...                                 +..|...+.+++
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---------------------------------l~~~~~~~~~~~  229 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------------------------VASFPRHNGAPA  229 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---------------------------------EECCSSCEEEEE
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---------------------------------eecCCCcccCEE
Confidence            99998  78999999885   99999998775321                                 223677899999


Q ss_pred             EcCCCCEEE-EEeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-CC--eEEEEEcCCCCCCcccc
Q 047325          162 LDQDCGLLY-TASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-DG--TVKVWKREQHGKGTKHS  234 (368)
Q Consensus       162 ~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~~~  234 (368)
                      |+|+++.|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|++ .|++++. ++  .|.+||+....      
T Consensus       230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------  302 (415)
T 2hqs_A          230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------  302 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------
T ss_pred             EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------
Confidence            999999887 6666554  99999988876 5667788899999999999 6776665 45  67777887542      


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC---eE
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK---TI  308 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i  308 (368)
                       ...+..+...+.+++|+|++++|++++.+   ..|++||+.++... ...........+++|++++|++++.++   .|
T Consensus       303 -~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          303 -PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  380 (415)
T ss_dssp             -CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             -EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence             23344456678899999999999988764   58999999876553 222223445577889999999888877   79


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ++||++..   ....+..|.+.|.+++|+|...
T Consensus       381 ~~~d~~g~---~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          381 NLVSTDGR---FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEETTSC---CEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEECCCC---cEEEeeCCCCCCcCCccccccc
Confidence            99998753   4667788999999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.8e-27  Score=205.08  Aligned_cols=259  Identities=12%  Similarity=0.053  Sum_probs=190.5

Q ss_pred             CcEEEEEecC---CEEEEcc----CCC----cEEEEcC--Ccc--e--ecccCCCCCeeEEEEe----------------
Q 047325           45 GHIYSLAASK---DLLYTGS----DSK----NIRVWKN--LKE--F--CGFKASSGLVKAIVIS----------------   91 (368)
Q Consensus        45 ~~i~~~~~~~---~~l~s~~----~dg----~i~iw~~--~~~--~--~~~~~~~~~v~~~~~~----------------   91 (368)
                      ..+...+|..   +++++|+    .||    +|++||+  .+.  +  ..+.+|...+..+++.                
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            3555566643   3777876    567    9999999  643  2  3467777777666554                


Q ss_pred             CCEEEEEeCC------CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           92 GEKIFTGHQD------GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        92 ~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      +..++.++.+      +.|++||++...                                 ...+.+|...+.+++|+|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---------------------------------~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---------------------------------QFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS---------------------------------CEEEEEESSCEEEEEECTT
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC---------------------------------CEEEeCCCCcceeeEEcCC
Confidence            5677777664      799999987533                                 1233458899999999999


Q ss_pred             CCEEEEEeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcCCCCCCccccccee
Q 047325          166 CGLLYTASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKREQHGKGTKHSLAQT  238 (368)
Q Consensus       166 ~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~  238 (368)
                      +++|++++.++   .|++||+.+++.. .+..+...+.+++|+|+| .|+ +++.++  .|++||++...       ...
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~  261 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQ  261 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEE
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEe
Confidence            99999999875   9999999998875 466688899999999999 566 666655  49999997642       345


Q ss_pred             eccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---CeEEEEe
Q 047325          239 LLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---KTICVWR  312 (368)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~  312 (368)
                      +..+...+.+++|+|+++.|++++. ++  .|++||+.++.........+.....+++|++++|++++.+   ..|++||
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d  341 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  341 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence            5667788999999999999888776 44  6788898876533212222333346778899999988764   5899999


Q ss_pred             cCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc
Q 047325          313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS  348 (368)
Q Consensus       313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  348 (368)
                      ++++..   ..+..+. .+.+++|+|+|+.+++++.
T Consensus       342 ~~~~~~---~~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          342 LATGGV---QVLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TTTCCE---EECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCCCE---EEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            987632   3444554 8999999999998776653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.5e-26  Score=205.18  Aligned_cols=274  Identities=12%  Similarity=0.070  Sum_probs=201.2

Q ss_pred             EEEEEecCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee--cCCCccccccC
Q 047325           47 IYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI--SPKNQSVHKRA  120 (368)
Q Consensus        47 i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~~~~~  120 (368)
                      ...+..++.++++++.|++|.+||..+.  +..+..+.. +..++|+  +++|++++.|++|.+||+  .+.+.....  
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--  218 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--  218 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--
Confidence            3333334558899999999999998743  445553322 7888887  889999999999999999  544321111  


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC----CCCEEEEEeC-CCcEEEEEccCCeEEEEeecC
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ----DCGLLYTASW-DRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~  195 (368)
                                                     .+...+..++|+|    +++++++++. +++|.+||..+++++..+..+
T Consensus       219 -------------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          219 -------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             -------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             -------------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence                                           1445678999999    9999999884 899999999999998888642


Q ss_pred             -----------CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-
Q 047325          196 -----------DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-  261 (368)
Q Consensus       196 -----------~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  261 (368)
                                 ...+..+.+++++  .+++...++.|.+||......     .......+...+..+.|+|++++|+++ 
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-----CEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-----ceeEEeccCcCccCceECCCCCEEEEEe
Confidence                       2368899999977  777888899999999986532     111122345567789999999977654 


Q ss_pred             cCCCcEEEEeCCCccccceeee---ccceEEEE-EEeC-CCEEEEee-CCCeEEEEecCCCc-----eeeeEeeeccccC
Q 047325          262 SSDGLVNFWEREKQLSHGGVLK---GHKLAVLC-LAAA-GKLVFSGS-ADKTICVWRRDGAI-----HTCLSVLTGHTGP  330 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~l~~~~-~dg~i~iw~~~~~~-----~~~~~~~~~h~~~  330 (368)
                      ..++.|.+||..+++.......   .|...... ++|+ +.+++++. .|++|.+||+++..     .+.++++..|...
T Consensus       343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            5689999999998765533322   25433333 4566 66677765 68999999998721     4788999999999


Q ss_pred             eeEEEEecCCeeeecCC---------cceEEEEEeeCC
Q 047325          331 VKCLAVEEDRDSSSSTS---------SCAQRWIVYSGS  359 (368)
Q Consensus       331 v~~l~~~~~~~~~~~~~---------~~~~~w~l~sg~  359 (368)
                      +..++|+|+++.+.++.         ..+.+|.+.++.
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            99999999999877654         356666665543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.6e-25  Score=184.40  Aligned_cols=245  Identities=14%  Similarity=0.091  Sum_probs=179.0

Q ss_pred             EccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC-CCccccccCCccccceeeeeccC
Q 047325           59 TGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP-KNQSVHKRAGTLPTLKDIFKSSI  134 (368)
Q Consensus        59 s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~  134 (368)
                      +++.|++|++||+... ...+..|...|.+++|+  +++|++++ ++.|.+||+.+ ++........             
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-------------   82 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-------------   82 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-------------
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-------------
Confidence            4578999999998753 44566788999999998  77888876 88999999988 6533222110             


Q ss_pred             CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEE--EccCCeEEEEeecCCCceEEEEeCCCC-e
Q 047325          135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEG-L  209 (368)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~  209 (368)
                                        +...+.+++|+|++++|++++  .++...||  |+.+++ ...+..+ ..+..++|+|++ .
T Consensus        83 ------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~  142 (297)
T 2ojh_A           83 ------------------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS  142 (297)
T ss_dssp             ------------------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE
T ss_pred             ------------------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE
Confidence                              246788999999999999998  33445555  444544 3444433 348889999999 5


Q ss_pred             EE-EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccce
Q 047325          210 IF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       210 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      |+ ++..++.+++|+++....     ....+..+...+.+++|+|+++.|+.++ .++.+++|++.........+..|..
T Consensus       143 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  217 (297)
T 2ojh_A          143 FTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY  217 (297)
T ss_dssp             EEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred             EEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence            55 788899999999754321     2344556777899999999999887665 5889999987632222234444554


Q ss_pred             EE--EEEEeCCCEEEEeeCC-----------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          288 AV--LCLAAAGKLVFSGSAD-----------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       288 ~~--~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      .+  .+++|++++|++++.+           +.|++||+.+.....+..+.+|...+.+++|+|+++.
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            44  5667799999888766           5699999988765666667788899999999999994

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.5e-24  Score=182.61  Aligned_cols=267  Identities=13%  Similarity=0.229  Sum_probs=176.7

Q ss_pred             EEEEccCCCcEEEEcCC--cc--eecccCCCCCeeEEEEe--CCEEEEEeCC-CeEEEEeec--CCCccccccCCccccc
Q 047325           56 LLYTGSDSKNIRVWKNL--KE--FCGFKASSGLVKAIVIS--GEKIFTGHQD-GKIRVWKIS--PKNQSVHKRAGTLPTL  126 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~--~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~  126 (368)
                      ++++++.|+.|++|++.  ..  ......+...+.+++|+  +++|++++.+ +.|.+|+++  ++......        
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--------   78 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--------   78 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc--------
Confidence            45555889999999884  21  22223567788889997  7788888886 999999997  33311100        


Q ss_pred             eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEcc---CCeEEEEeecCCCceEEE
Q 047325          127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRIS---DSKCLESVSAHDDAVNSV  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v~~~  202 (368)
                                            .+. ....+..++|+|+++++++++. ++.|.+||+.   +.+.+..+..+ ..+.++
T Consensus        79 ----------------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~  134 (343)
T 1ri6_A           79 ----------------------ESA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSA  134 (343)
T ss_dssp             ----------------------EEE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCC
T ss_pred             ----------------------ccc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEE
Confidence                                  011 2237789999999998877765 7889999994   44455555433 458899


Q ss_pred             EeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCC--ccc
Q 047325          203 VSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREK--QLS  277 (368)
Q Consensus       203 ~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~  277 (368)
                      +|+|++ .+++++ .++.|.+||+...+.................+..++|+|++++++++ ..++.|.+|+++.  +..
T Consensus       135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            999999 666666 89999999997632200000001112233568889999999977554 5889999999953  221


Q ss_pred             c-ceeee----cc----ceEEEEEEeCCCEEE-EeeCCCeEEEEecC--CCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          278 H-GGVLK----GH----KLAVLCLAAAGKLVF-SGSADKTICVWRRD--GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       278 ~-~~~~~----~~----~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      . .....    ++    ....++++|++++|+ ++..++.|++|+++  ....+.+..+..+.. +.+++|+|+++.+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEE
T ss_pred             EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEE
Confidence            1 11111    11    122367888898777 45579999999998  333455556655554 899999999986554


Q ss_pred             CC---cceEEEEE
Q 047325          346 TS---SCAQRWIV  355 (368)
Q Consensus       346 ~~---~~~~~w~l  355 (368)
                      ++   +.+.+|.+
T Consensus       294 ~~~~~~~v~v~~~  306 (343)
T 1ri6_A          294 AGQKSHHISVYEI  306 (343)
T ss_dssp             ECTTTCEEEEEEE
T ss_pred             ecCCCCeEEEEEE
Confidence            43   34555544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=9e-24  Score=177.02  Aligned_cols=265  Identities=8%  Similarity=0.085  Sum_probs=179.2

Q ss_pred             EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeee
Q 047325           56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      .+++++.++.|++||..+.  ......+...+ .++|+  ++++++++. ++.|.+||+.+++...              
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~--------------   76 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV--------------   76 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE--------------
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE--------------
Confidence            6888899999999998743  33444555556 88887  666766665 8999999998775310              


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSE  207 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  207 (368)
                                       ..+..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+..+ ....+++|+|+
T Consensus        77 -----------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd  138 (331)
T 3u4y_A           77 -----------------VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN  138 (331)
T ss_dssp             -----------------EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred             -----------------EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence                             11112444444599999999999655553   8999999999988887754 45689999999


Q ss_pred             C-eEEEE-cCCCe-EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc---cce
Q 047325          208 G-LIFTG-SADGT-VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS---HGG  280 (368)
Q Consensus       208 ~-~l~~~-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~  280 (368)
                      + .++++ ..++. |.+|++...+......  .........+..++|+|++++++ ++..++.|.+||+++++.   ...
T Consensus       139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          139 GNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             SSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            9 45444 55577 9999998543211111  12223345578999999999655 455689999999987665   322


Q ss_pred             eeeccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCceeeeEeeecc----ccC---eeEEEEecCCeeeecC---Ccc
Q 047325          281 VLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHTCLSVLTGH----TGP---VKCLAVEEDRDSSSST---SSC  349 (368)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~---~~~  349 (368)
                      ...+....-++++|++++|+++ ..++.|.+||+.++....+..+..+    ..+   ...++|+|+++.+..+   ++.
T Consensus       217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  296 (331)
T 3u4y_A          217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE  296 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred             ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence            2222233347788999976655 4578899999987754445444333    222   3568999999865332   223


Q ss_pred             eEEEEE
Q 047325          350 AQRWIV  355 (368)
Q Consensus       350 ~~~w~l  355 (368)
                      +.+|.+
T Consensus       297 v~v~d~  302 (331)
T 3u4y_A          297 LKVFTI  302 (331)
T ss_dssp             EEEEET
T ss_pred             EEEEEe
Confidence            555544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=7.7e-24  Score=196.55  Aligned_cols=271  Identities=10%  Similarity=0.020  Sum_probs=194.6

Q ss_pred             CCcEEEEEecCC--EEEEccC-CC-----cEEEEcCCcce--ecccCCC------------------------CCeeEEE
Q 047325           44 EGHIYSLAASKD--LLYTGSD-SK-----NIRVWKNLKEF--CGFKASS------------------------GLVKAIV   89 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~-dg-----~i~iw~~~~~~--~~~~~~~------------------------~~v~~~~   89 (368)
                      ...|.+++|+++  +|++++. |+     .|++||+.+..  ..+..+.                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456889999755  8998888 88     89999987432  2222222                        2377888


Q ss_pred             Ee--CCEEEEEeCCCeEEEEeecCC---CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC
Q 047325           90 IS--GEKIFTGHQDGKIRVWKISPK---NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ  164 (368)
Q Consensus        90 ~~--~~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (368)
                      |+  |++|++++. +.|.+||+.++   ....                                 +..|...+..++|+|
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~SP  161 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---------------------------------LTHGEGFATDAKLSP  161 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---------------------------------CCCSSSCEEEEEECT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---------------------------------cccCCcccccccCCC
Confidence            88  788888886 99999999877   3211                                 112667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----------------eEEEEeCCCC-eEEEEcCCC----------
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----------------VNSVVSSSEG-LIFTGSADG----------  217 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~-~l~~~~~dg----------  217 (368)
                      ||++|+.++ ++.|++||+.+++.......+...                +..+.|+||| .|++++.|+          
T Consensus       162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~  240 (741)
T 2ecf_A          162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE  240 (741)
T ss_dssp             TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence            999999887 468999999998877655444332                4779999999 788877665          


Q ss_pred             -----------------------eEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-----CCcEE
Q 047325          218 -----------------------TVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-----DGLVN  268 (368)
Q Consensus       218 -----------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~  268 (368)
                                             .|.+||+.. ...    ........+...+..++| ||+++|++++.     +..|+
T Consensus       241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~  315 (741)
T 2ecf_A          241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLV  315 (741)
T ss_dssp             ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEE
T ss_pred             CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEE
Confidence                                   788889876 421    011111146778999999 99999987654     56799


Q ss_pred             EEeCCCccccceeeeccce------EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE-EEecCCe
Q 047325          269 FWEREKQLSHGGVLKGHKL------AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL-AVEEDRD  341 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~  341 (368)
                      +||+.++.... ....+..      ....++||++++++++.||.+++|.++... . ...+..|...|..+ .|+|+++
T Consensus       316 ~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~~~~v~~~~~~s~dg~  392 (741)
T 2ecf_A          316 EVTLASNQQRV-LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-K-AAALTHGNWSVDELLAVDEKAG  392 (741)
T ss_dssp             EEETTTCCEEE-EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-C-EEESCCSSSCEEEEEEEETTTT
T ss_pred             EEECCCCceEE-EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-C-eeeeeecceEEEeEeEEeCCCC
Confidence            99998875442 3322221      236788999999999999988898876432 3 56677788888887 5999998


Q ss_pred             eeec-CC--c--ceEEEEEee
Q 047325          342 SSSS-TS--S--CAQRWIVYS  357 (368)
Q Consensus       342 ~~~~-~~--~--~~~~w~l~s  357 (368)
                      .++. ++  +  ..++|.+-.
T Consensus       393 ~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          393 LAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEEEEECSSCTTCBEEEEEET
T ss_pred             EEEEEEeCCCCceEEEEEEEc
Confidence            6542 22  2  456777653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=9.7e-22  Score=166.12  Aligned_cols=266  Identities=10%  Similarity=0.066  Sum_probs=186.4

Q ss_pred             CCcEEEEEecCC--EEEEccC-------CCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEee
Q 047325           44 EGHIYSLAASKD--LLYTGSD-------SKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKI  109 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~-------dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~  109 (368)
                      ...+..++++++  ++++++.       ++.|.+||..+.  ...+.. ...+..++++  +++++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            456778888754  6666553       568999998743  233332 3346677777  66555 4555799999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCe
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSK  187 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~  187 (368)
                      .+++..............                       ......+.+++|+|+++++++++  .++.|.+||+.+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTE-----------------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             TTCCEEEEEESCCCCCCS-----------------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             CCCeeEEEEecCCCcccc-----------------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence            887653332221000000                       00112367899999999887776  47889999999999


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec----cccccEEEEEEcCCCCEEEEec
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .+..+..+...+.+++++|++ .+++++.++.|.+||+....      ......    ++...+..++|+|+++++++++
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK------ILSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe------EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            998887666668899999999 88888999999999998652      222222    2455688899999999777665


Q ss_pred             C-CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          263 S-DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       263 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      . ++.|.+||..+++.......+ .....++++++++++++. .++.|.+||..+.  +.+..+.. ...+.+++|+|++
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg  325 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY--KVVKTFDT-PTHPNSLALSADG  325 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEEEC-CSEEEEEEECTTS
T ss_pred             CCCCEEEEEECCCCcEEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEEEECCCC--eEEEEEec-CCCCCeEEEcCCC
Confidence            5 489999999887655333333 334478899998665555 6899999998876  55555543 3468999999999


Q ss_pred             eee
Q 047325          341 DSS  343 (368)
Q Consensus       341 ~~~  343 (368)
                      +.+
T Consensus       326 ~~l  328 (353)
T 3vgz_A          326 KTL  328 (353)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            854

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2.6e-22  Score=192.46  Aligned_cols=272  Identities=11%  Similarity=0.086  Sum_probs=200.3

Q ss_pred             eeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325           37 IGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~  110 (368)
                      ...+.+|.+.+.++.|+++ ++++++.|+.++||.+.   .....+..|. .+...+|+  |+.|+.+ .++.|.+|++.
T Consensus       196 ~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~  273 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD  273 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             eEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence            4456899999999999988 56677888999999753   2334444444 34555665  7778877 48999999984


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc-CCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD-QDCGLLYTASWDRTFKVWRISDSKCL  189 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (368)
                      ..... ......                     ......+..|...+.+++|+ |+++.|++++ ++.|.+|++..++..
T Consensus       274 ~~~l~-~l~~~~---------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          274 TEKIE-KIEIGD---------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             TCCEE-ECCCCC---------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             ceEee-eeccCc---------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            33211 111000                     00011122366789999999 9999999888 789999999887755


Q ss_pred             EEeecCCC-ceEEEEeCCCC-eEEEEcCCCeEE-EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          190 ESVSAHDD-AVNSVVSSSEG-LIFTGSADGTVK-VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       190 ~~~~~~~~-~v~~~~~~~~~-~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      . +..|.. .+..++|+ ++ .++.++.++.+. +||+....       ...+..+...+..++|+|++++|++++.++.
T Consensus       331 ~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~  401 (1045)
T 1k32_A          331 K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-------AEKFEENLGNVFAMGVDRNGKFAVVANDRFE  401 (1045)
T ss_dssp             E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-------EEECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-------ceEecCCccceeeeEECCCCCEEEEECCCCe
Confidence            4 556666 89999999 88 788877788888 89987542       2233367778999999999999999999999


Q ss_pred             EEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEeeCCC----------eEEEEecCCCceeeeEeeeccccCeeEE
Q 047325          267 VNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGSADK----------TICVWRRDGAIHTCLSVLTGHTGPVKCL  334 (368)
Q Consensus       267 i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg----------~i~iw~~~~~~~~~~~~~~~h~~~v~~l  334 (368)
                      |++||+.+++.. .....|...  ..+++|||++|++++.++          .|++||+.++  + ...+..|...+..+
T Consensus       402 v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--~-~~~l~~~~~~~~~~  477 (1045)
T 1k32_A          402 IMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--K-IFAATTENSHDYAP  477 (1045)
T ss_dssp             EEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--E-EEECSCSSSBEEEE
T ss_pred             EEEEECCCCceE-EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--c-EEEeeCCCcccCCc
Confidence            999999887554 334455544  367888999998887654          8999999876  3 55677788889999


Q ss_pred             EEecCCeeeecC
Q 047325          335 AVEEDRDSSSST  346 (368)
Q Consensus       335 ~~~~~~~~~~~~  346 (368)
                      +|+|||+.++..
T Consensus       478 ~~spdG~~l~~~  489 (1045)
T 1k32_A          478 AFDADSKNLYYL  489 (1045)
T ss_dssp             EECTTSCEEEEE
T ss_pred             eEcCCCCEEEEE
Confidence            999999966544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=6e-22  Score=175.80  Aligned_cols=282  Identities=9%  Similarity=0.047  Sum_probs=191.2

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcC--Ccc--eecccCCCCCeeEEEEe------CCEEEE
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKN--LKE--FCGFKASSGLVKAIVIS------GEKIFT   97 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~--~~~--~~~~~~~~~~v~~~~~~------~~~l~s   97 (368)
                      +...++++.++..+.. +.+++|+++  +|++++.|++|++||+  .+.  +..+. +...+..++|+      ++++++
T Consensus       165 D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          165 DGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             ETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             ECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence            3455667777773333 888888755  9999999999999999  432  33344 34557888886      568888


Q ss_pred             EeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCE-EEEEeC
Q 047325           98 GHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGL-LYTASW  174 (368)
Q Consensus        98 ~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-l~~~~~  174 (368)
                      ++. +++|.+||..+.+............                    ...  ..|. ..+..+.++|++.. +++...
T Consensus       243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~--------------------~~~--~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          243 GAYWPPQFAIMDGETLEPKQIVSTRGMTV--------------------DTQ--TYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECS--------------------SSC--CEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             EEccCCeEEEEeccccccceeecccCccc--------------------Ccc--ccccCCceEEEEECCCCCEEEEEECC
Confidence            874 8999999988776543322110000                    000  0033 37899999997664 556667


Q ss_pred             CCcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeec----cccccE
Q 047325          175 DRTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAV  246 (368)
Q Consensus       175 d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i  246 (368)
                      ++.|.+||+.+.+.+.  .+. +...+.++.|+|++ +++ ++..+++|.+||..++.      +...+.    .|.+..
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~------l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALVDVGKTPHPGRG  373 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE------EEEEEECSSSBCCTTC
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe------EEEeeccCCCCCCCCC
Confidence            8999999998765433  443 56678889999999 555 45568999999998752      233332    244333


Q ss_pred             EEEEEcCC-CCEEEEec-CCCcEEEEeCCCc------cccceeeeccceE--EEEEEeCCCEEEEee-------CCCeEE
Q 047325          247 TALVVSSS-RSIVYCGS-SDGLVNFWEREKQ------LSHGGVLKGHKLA--VLCLAAAGKLVFSGS-------ADKTIC  309 (368)
Q Consensus       247 ~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~------~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-------~dg~i~  309 (368)
                      ..+ ++|+ +..++++. .|++|.+||+.+.      ......+..|...  -+.++|++++|++++       .+++|.
T Consensus       374 ~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~  452 (543)
T 1nir_A          374 ANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  452 (543)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred             ccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence            333 4676 66666765 6899999999871      2333556666544  366789999999987       277999


Q ss_pred             EEecCCCceeeeEee--------eccccCeeEEEEecCCeeee
Q 047325          310 VWRRDGAIHTCLSVL--------TGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       310 iw~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~  344 (368)
                      +||+.+.+.. ...+        ..+...+..++|+|+|+.+.
T Consensus       453 v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~  494 (543)
T 1nir_A          453 VFDLKNLDAK-YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  494 (543)
T ss_dssp             EEETTCTTSC-CEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred             EEECCCCCCC-eEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence            9999876422 1222        35677899999999999655

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1e-21  Score=165.29  Aligned_cols=269  Identities=12%  Similarity=0.210  Sum_probs=175.6

Q ss_pred             cCcCCcEEEEEecCC--EEEEccCC-CcEEEEcCC--cc----eecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEe
Q 047325           41 VREEGHIYSLAASKD--LLYTGSDS-KNIRVWKNL--KE----FCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWK  108 (368)
Q Consensus        41 ~~h~~~i~~~~~~~~--~l~s~~~d-g~i~iw~~~--~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~  108 (368)
                      ..|...+.+++|+++  +|++++.+ +.|++|++.  ..    +..+..+. .+..++|+  +++|++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            346778888998755  67777765 999999976  22    22333333 78889998  677766664 88999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccC-C
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISD-S  186 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~  186 (368)
                      +..+......                             .. ......+.+++|+|+++++++++ .++.|.+||+.+ +
T Consensus       113 ~~~~~~~~~~-----------------------------~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A          113 LEDGLPVGVV-----------------------------DV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             EETTEEEEEE-----------------------------EE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCCcccccc-----------------------------cc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            9622110000                             00 01334578899999999888887 889999999987 6


Q ss_pred             eEEE----Eeec-CCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcc-cccceeecc---ccccEEEEEEcCCC
Q 047325          187 KCLE----SVSA-HDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTK-HSLAQTLLK---QECAVTALVVSSSR  255 (368)
Q Consensus       187 ~~~~----~~~~-~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~---~~~~i~~~~~~~~~  255 (368)
                      +...    .+.. ....+.+++|+|++ .++ ++..++.|.+||++....... .........   ....+..++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            5432    2232 34578899999999 454 555899999999964221000 111111111   13457789999999


Q ss_pred             CEEE-EecCCCcEEEEeCCC--cc-ccceeeec-cceEEEEEEeCCCEEEEee-CCCeEEEEecC--CCceeeeEeeecc
Q 047325          256 SIVY-CGSSDGLVNFWEREK--QL-SHGGVLKG-HKLAVLCLAAAGKLVFSGS-ADKTICVWRRD--GAIHTCLSVLTGH  327 (368)
Q Consensus       256 ~~l~-~~~~dg~i~i~d~~~--~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~h  327 (368)
                      ++|+ ++..++.|.+||++.  +. ........ .....+++++++++|++++ .++.|.+|+++  ++..+.+..+.. 
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-  321 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-  321 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-
Confidence            8877 455789999999982  21 11122222 2233467888999888777 68999999665  444455555544 


Q ss_pred             ccCeeEEEEecCCe
Q 047325          328 TGPVKCLAVEEDRD  341 (368)
Q Consensus       328 ~~~v~~l~~~~~~~  341 (368)
                      .....+++|.|+..
T Consensus       322 g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          322 GQGPMWVVVNAHEG  335 (343)
T ss_dssp             SSSCCEEEEEEEC-
T ss_pred             CCCCeeEEEEcccC
Confidence            34577888887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=9.3e-23  Score=188.78  Aligned_cols=281  Identities=11%  Similarity=0.041  Sum_probs=184.2

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCC---CeeEEEEe--CCEEEEEeCC---------CeEEEE
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSG---LVKAIVIS--GEKIFTGHQD---------GKIRVW  107 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~---~v~~~~~~--~~~l~s~~~d---------g~i~vw  107 (368)
                      .+.+++|+++  ++++ +.||+|++||+.+.  ...+..|..   .|.+++|+  |++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3566777755  6655 78999999998743  334455544   48999998  8899998874         788899


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |+.+++.......                              .+|...+..++|+|||+.|+.++. +.|++||+.+++
T Consensus        97 d~~~~~~~~l~~~------------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A           97 KIPHGDPQSLDPP------------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             ESSSCCCEECCCT------------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred             ECCCCceEeccCC------------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence            9988764211111                              015556888999999999999886 799999999888


Q ss_pred             EEEEeecCCCce------------------EEEEeCCCC-eEEEEcCCC-------------------------------
Q 047325          188 CLESVSAHDDAV------------------NSVVSSSEG-LIFTGSADG-------------------------------  217 (368)
Q Consensus       188 ~~~~~~~~~~~v------------------~~~~~~~~~-~l~~~~~dg-------------------------------  217 (368)
                      .......+...+                  .+++|+||| .|++++.|+                               
T Consensus       146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence            766655443333                  789999999 777776543                               


Q ss_pred             ---eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC----CCcEEEEeCCCccccceeeeccce---
Q 047325          218 ---TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS----DGLVNFWEREKQLSHGGVLKGHKL---  287 (368)
Q Consensus       218 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~---  287 (368)
                         .|++||+.................+...+..++|+|||++|++...    +..|++||+.+++........+..   
T Consensus       226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  305 (723)
T 1xfd_A          226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH  305 (723)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEe
Confidence               7999998765321100000111123677999999999998877643    357999999877644222222222   


Q ss_pred             ---EEEEEEeCCCEEEE--eeCCC------eEEEEe-cCCCceeeeEeeeccccCeeE-EEEecCCeeeecCC-----cc
Q 047325          288 ---AVLCLAAAGKLVFS--GSADK------TICVWR-RDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSSSTS-----SC  349 (368)
Q Consensus       288 ---~~~~~~~~~~~l~~--~~~dg------~i~iw~-~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~-----~~  349 (368)
                         ....++|||+.|+.  +..++      .|.+|| .......+...+..+...+.. ++|+|||+.++...     +.
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  385 (723)
T 1xfd_A          306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR  385 (723)
T ss_dssp             CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred             ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence               14578899997765  45677      456666 233310013344433444554 69999999775432     44


Q ss_pred             eEEEEEeeC
Q 047325          350 AQRWIVYSG  358 (368)
Q Consensus       350 ~~~w~l~sg  358 (368)
                      .++|.+-..
T Consensus       386 ~~l~~~~~~  394 (723)
T 1xfd_A          386 RQLYSANTV  394 (723)
T ss_dssp             CEEEEECSS
T ss_pred             eEEEEEeCC
Confidence            677777543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=3.2e-22  Score=167.88  Aligned_cols=259  Identities=8%  Similarity=0.004  Sum_probs=173.2

Q ss_pred             CEEEEccCCCcEEEEcCCcc--eecccCCC-C-CeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           55 DLLYTGSDSKNIRVWKNLKE--FCGFKASS-G-LVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~-~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      ++|++++.++.|++||..+.  ...+.... . .+..++|+  ++++ +++..++.|.+||+.+++...........   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence            47899999999999998753  22333222 1 47788887  5555 55566899999999887643322211000   


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------------CCCcEEEEEccCCeEEEEeecC
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------------WDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                                              .+...+.+++|+|+++++++++            .++.|.+||+.+++.+..+.. 
T Consensus        79 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             ------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence                                    0122566899999999998886            579999999999988887765 


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---------
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---------  265 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------  265 (368)
                      ...+.+++|+|++ +++++  ++.|.+||+....      ....+..+.. ...+.|+|+++.++..+..+         
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence            4567889999999 67776  6899999997652      2222222210 01236788888766554332         


Q ss_pred             ---------------cEEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325          266 ---------------LVNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT  328 (368)
Q Consensus       266 ---------------~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~  328 (368)
                                     .|.+||+++++........+...  -++++|++++++++  ++.|++||+.+.  +.+..+.. .
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~~-~  279 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--ASIKRVPL-P  279 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--EEEEEEEC-S
T ss_pred             cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC--cCcceecC-C
Confidence                           46899998765542233333323  36778899999988  799999999876  44555543 3


Q ss_pred             cCeeEEEEecCCeeeecCC--cceEEEEE
Q 047325          329 GPVKCLAVEEDRDSSSSTS--SCAQRWIV  355 (368)
Q Consensus       329 ~~v~~l~~~~~~~~~~~~~--~~~~~w~l  355 (368)
                      ..+.+++|+|+++.++++.  +.+.+|.+
T Consensus       280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            5678999999998554433  33444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=3.8e-23  Score=190.82  Aligned_cols=282  Identities=10%  Similarity=0.043  Sum_probs=183.5

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCccee---cccCCC-----------------CCeeEEEE
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC---GFKASS-----------------GLVKAIVI   90 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~-----------------~~v~~~~~   90 (368)
                      +|.+.....+..+.  +..+.|.++.+++++.|+ | +||+.+...   .+..|.                 ..|.+++|
T Consensus        14 ~~~~~~~~~~~~~~--~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~   89 (706)
T 2z3z_A           14 MPGGKEFYNFYPEY--VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD   89 (706)
T ss_dssp             ----------------CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE
T ss_pred             cCCccccccccccc--CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE
Confidence            44444455555443  333444477777777788 8 999864322   222222                 56999999


Q ss_pred             e-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325           91 S-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL  169 (368)
Q Consensus        91 ~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  169 (368)
                      + .+.++.+ .++.|++||+.+++...                                 +..+...+.+++|+|||+.|
T Consensus        90 spd~~~~~~-~~~~i~~~d~~~~~~~~---------------------------------l~~~~~~~~~~~~SpdG~~l  135 (706)
T 2z3z_A           90 AGRGLVVLF-TQGGLVGFDMLARKVTY---------------------------------LFDTNEETASLDFSPVGDRV  135 (706)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTTEEEE---------------------------------EECCTTCCTTCEECTTSSEE
T ss_pred             CCCCeEEEE-ECCEEEEEECCCCceEE---------------------------------ccCCcccccCCcCCCCCCEE
Confidence            8 4455554 46999999998764321                                 11255668889999999999


Q ss_pred             EEEeCCCcEEEEEccC-----CeEEEEeecCCCc--------------eEEEEeCCCC-eEEEEc---------------
Q 047325          170 YTASWDRTFKVWRISD-----SKCLESVSAHDDA--------------VNSVVSSSEG-LIFTGS---------------  214 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~-~l~~~~---------------  214 (368)
                      +.+ .++.|++||+.+     ++.......+...              +.++.|+||| .|++++               
T Consensus       136 a~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~  214 (706)
T 2z3z_A          136 AYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYH  214 (706)
T ss_dssp             EEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECC
T ss_pred             EEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence            985 679999999998     7766544433332              4789999999 777776               


Q ss_pred             ------------------CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEe
Q 047325          215 ------------------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWE  271 (368)
Q Consensus       215 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d  271 (368)
                                        .+..|++||+..+..    ........+...+..++|+||++.|++++.++     .|++||
T Consensus       215 ~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d  290 (706)
T 2z3z_A          215 PLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYD  290 (706)
T ss_dssp             SSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEE
Confidence                              446899999976421    11111124667799999999999999887765     899999


Q ss_pred             CCCccccceeee-ccce-----EEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCee
Q 047325          272 REKQLSHGGVLK-GHKL-----AVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDS  342 (368)
Q Consensus       272 ~~~~~~~~~~~~-~~~~-----~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~  342 (368)
                      +.++........ .+..     ....++|  +++++++++.||.+++|+++.. ...+..+..|...+.+ ++|+|+++.
T Consensus       291 ~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          291 AETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             TTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred             CCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCE
Confidence            988733222222 2221     2257889  9999999999999999988732 2455667778778887 799999986


Q ss_pred             eecC-Cc----ceEEEEEe
Q 047325          343 SSST-SS----CAQRWIVY  356 (368)
Q Consensus       343 ~~~~-~~----~~~~w~l~  356 (368)
                      ++.+ ..    ...+|.+-
T Consensus       370 l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          370 LYFESTEASPLERHFYCID  388 (706)
T ss_dssp             EEEEESSSCTTCBEEEEEE
T ss_pred             EEEEecCCCCceEEEEEEE
Confidence            6433 22    23666553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=4.3e-22  Score=172.08  Aligned_cols=222  Identities=14%  Similarity=0.152  Sum_probs=151.7

Q ss_pred             CcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeE
Q 047325           64 KNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIE  141 (368)
Q Consensus        64 g~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (368)
                      +.+++|+....     .+...++.++++  +.++++++.|+ +++|+........... ....             .   
T Consensus        23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~~~~-------------~---   79 (434)
T 2oit_A           23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-DDPN-------------K---   79 (434)
T ss_dssp             CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-CCTT-------------C---
T ss_pred             eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-cCcc-------------c---
Confidence            46888875422     123456777777  77899999887 8898765321110000 0000             0   


Q ss_pred             ecccceeeeeecCCCEeEEEEcCCCCEEE----EEeCCCcEEEEEccCC--------e---EEEEeecCCCceEEEEeCC
Q 047325          142 VRRHRTALWIRHSDAVSCMSLDQDCGLLY----TASWDRTFKVWRISDS--------K---CLESVSAHDDAVNSVVSSS  206 (368)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~~~  206 (368)
                      ...........+...|.+++|+|++++|+    +++.|+.|++||+.++        +   .+..+.+|...|.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  159 (434)
T 2oit_A           80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP  159 (434)
T ss_dssp             EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS
T ss_pred             ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC
Confidence            00000011123677899999999999999    7888999999998765        2   2455667899999999999


Q ss_pred             C-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-
Q 047325          207 E-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-  283 (368)
Q Consensus       207 ~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  283 (368)
                      + + +|++++.||.|++||++..      ........|...|.+++|+|++++|++|+.||.|++||.+. ... .... 
T Consensus       160 ~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~  231 (434)
T 2oit_A          160 TVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPC  231 (434)
T ss_dssp             SCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECC
T ss_pred             CCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccC
Confidence            8 5 8999999999999999865      12334456788999999999999999999999999999982 221 1111 


Q ss_pred             ------ccceEEEEEEe--CCCEEEE-eeCCC------eEEEEecCCC
Q 047325          284 ------GHKLAVLCLAA--AGKLVFS-GSADK------TICVWRRDGA  316 (368)
Q Consensus       284 ------~~~~~~~~~~~--~~~~l~~-~~~dg------~i~iw~~~~~  316 (368)
                            .|...+.++++  ++.++++ +..||      .+++|++...
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                  23446666665  4555543 33443      3899998754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=2.8e-21  Score=162.93  Aligned_cols=261  Identities=15%  Similarity=0.197  Sum_probs=170.4

Q ss_pred             cCCCcEEEEcCCc--c-ee--cccCCCCCeeEEEEe--CCEEEEEeC---CCeEEEEeecCCCccccccCCccccceeee
Q 047325           61 SDSKNIRVWKNLK--E-FC--GFKASSGLVKAIVIS--GEKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        61 ~~dg~i~iw~~~~--~-~~--~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      +.++.|.+|++..  . +.  ....+......++|+  ++ |++++.   ++.|.+|++.++.....             
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-------------   78 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-------------   78 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-------------
T ss_pred             CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-------------
Confidence            3456788876542  2 11  223455667788888  45 666654   68999999976542111             


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEcc-CC--eEEEEeecC---------CC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRIS-DS--KCLESVSAH---------DD  197 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~--~~~~~~~~~---------~~  197 (368)
                                       ..+..+...+..++|+|++++|++++ .++.|.+||+. ++  +.+..+...         ..
T Consensus        79 -----------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~  141 (347)
T 3hfq_A           79 -----------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGS  141 (347)
T ss_dssp             -----------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSC
T ss_pred             -----------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCC
Confidence                             11123667788999999999888888 67899999996 23  333333221         12


Q ss_pred             ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCC
Q 047325          198 AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREK  274 (368)
Q Consensus       198 ~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~  274 (368)
                      .+.+++|+|++ .+++...++.|.+|++...+.   ....... ......+..++|+|+++++++ +..++.|.+|++..
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ---LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEEEECTTSC---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEECCCCcEEEEeCCCCEEEEEEECCCCc---EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            47889999999 666667789999999983321   1111111 122335788999999996655 56788999999874


Q ss_pred             --cccc-ceeeec--------cceEEEEEEeCCCEE-EEeeCCCeEEEEecCC-CceeeeEeeeccccCeeEEEEecCCe
Q 047325          275 --QLSH-GGVLKG--------HKLAVLCLAAAGKLV-FSGSADKTICVWRRDG-AIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       275 --~~~~-~~~~~~--------~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                        +... ......        ....-++++|+|++| ++...++.|.+|+++. +....+..+..+...+..++|+|+|+
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~  298 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA  298 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC
Confidence              2211 111111        113337788999977 4556689999999863 23456666777777789999999999


Q ss_pred             eeecCC---cceEEEEE
Q 047325          342 SSSSTS---SCAQRWIV  355 (368)
Q Consensus       342 ~~~~~~---~~~~~w~l  355 (368)
                      ++++++   +.+.+|.+
T Consensus       299 ~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEE
Confidence            765543   33455544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5e-22  Score=183.35  Aligned_cols=273  Identities=8%  Similarity=0.060  Sum_probs=181.9

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC-----CCcc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP-----KNQS  115 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~-----~~~~  115 (368)
                      ..|.+++|+++ .++.+ .|+.|++||+.+. ...+..+...+.+++|+  |++|+++ .|+.|++||+.+     ++..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence            56999999887 44444 4599999998754 34455667778888898  7788885 689999999987     5543


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe----------------------
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS----------------------  173 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------------  173 (368)
                      .........    ....            ..  ....+...+.++.|+||+++|++++                      
T Consensus       160 ~~~~~~~~~----~~~g------------~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          160 AVTIDGTET----LVYG------------QA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             ESCSCCBTT----EEES------------SC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             EeccCCCCC----eEcc------------cc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence            222111000    0000            00  0111234468899999999999987                      


Q ss_pred             -----------CCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCC-----eEEEEEcCCCCCCcccc
Q 047325          174 -----------WDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADG-----TVKVWKREQHGKGTKHS  234 (368)
Q Consensus       174 -----------~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~  234 (368)
                                 .+..|.+||+.+++......  .+...+.+++|+|++ .|++++.++     .|++||+.++..   ..
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~---~~  298 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF---VR  298 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE---EE
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce---ee
Confidence                       44689999999988655442  466789999999999 788777665     899999976521   01


Q ss_pred             cceeecccc---ccEEEEEEcC--CCCEEEEecCCCcEEEEeCC-CccccceeeeccceEE---EEEEeCCCEEEEeeC-
Q 047325          235 LAQTLLKQE---CAVTALVVSS--SRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGHKLAV---LCLAAAGKLVFSGSA-  304 (368)
Q Consensus       235 ~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~-  304 (368)
                      .... ..+.   ..+..++|+|  ++++++++..||.+++|+++ ++... ..+..+...+   ..++++++.|+.++. 
T Consensus       299 ~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          299 TLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-RQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-EECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-EecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            1111 1111   1245789999  99999999999999999876 33222 3334444333   577889987765544 


Q ss_pred             CC----eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          305 DK----TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       305 dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      ++    .|..||+.++.   ...+. |...+.+++|+|||+.++..
T Consensus       377 ~~~~~~~l~~~d~~~~~---~~~l~-~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          377 ASPLERHFYCIDIKGGK---TKDLT-PESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             SCTTCBEEEEEETTCCC---CEESC-CSSSEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEEEEcCCCC---ceecc-CCCceEEEEECCCCCEEEEE
Confidence            44    55666655542   23333 67789999999999977654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=1.5e-21  Score=181.22  Aligned_cols=272  Identities=10%  Similarity=0.023  Sum_probs=182.9

Q ss_pred             EEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325           47 IYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        47 i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~  118 (368)
                      |.+++|+++  +|++++. +.|++||+...    ...+..|...+..++|+  |++|+.++ ++.|.+||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            778888765  7887776 99999998754    55677888899999998  77888887 569999999876543222


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC----------------------
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR----------------------  176 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------------------  176 (368)
                      .......    ..            .....+.......+..+.|+||+++|++++.|+                      
T Consensus       189 ~~~~~~~----~~------------g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          189 ADGSTTI----GN------------GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             CCCCSSE----EE------------SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             cCCccce----ec------------cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            1110000    00            000000000112357899999999999988765                      


Q ss_pred             -----------cEEEEEccC-CeEEEEee--cCCCceEEEEeCCCC-eEEEEcC-----CCeEEEEEcCCCCCCcccccc
Q 047325          177 -----------TFKVWRISD-SKCLESVS--AHDDAVNSVVSSSEG-LIFTGSA-----DGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       177 -----------~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~  236 (368)
                                 .|.+||+.+ ++......  .|...+..++| |+| .|++++.     +..|++||+.++..      .
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~------~  325 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ------R  325 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE------E
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce------E
Confidence                       789999988 77654443  36778999999 999 6665543     57899999986532      2


Q ss_pred             eeeccccc----cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE---EEEEeCCCEEE-EeeCCC--
Q 047325          237 QTLLKQEC----AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV---LCLAAAGKLVF-SGSADK--  306 (368)
Q Consensus       237 ~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~~dg--  306 (368)
                      .....+..    .+..++|+|+++++++++.||.+++|.+..... ...+..+...+   ..++++++.|+ +++.++  
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~  404 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR  404 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred             EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence            22222221    345789999999999999999888877652111 23444444433   35889998765 455555  


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      .+++|+++... .....+.. ...+.+++|+||++.++..
T Consensus       405 ~~~l~~~~~~g-~~~~~l~~-~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          405 ESQIYAVPLQG-GQPQRLSK-APGMHSASFARNASVYVDS  442 (741)
T ss_dssp             CBEEEEEETTC-CCCEECCC-SCSEEEEEECTTSSEEEEE
T ss_pred             eEEEEEEEcCC-CCeeeccc-CCCceEEEECCCCCEEEEE
Confidence            89999986431 33444544 6678899999999987754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=2.1e-21  Score=179.73  Aligned_cols=286  Identities=9%  Similarity=-0.016  Sum_probs=186.4

Q ss_pred             ccCCCceeeeccCcCC---cEEEEEecCC--EEEEccCC---------CcEEEEcCCcce----ecccCCCCCeeEEEEe
Q 047325           30 NLPQNGLIGSLVREEG---HIYSLAASKD--LLYTGSDS---------KNIRVWKNLKEF----CGFKASSGLVKAIVIS   91 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~---~i~~~~~~~~--~l~s~~~d---------g~i~iw~~~~~~----~~~~~~~~~v~~~~~~   91 (368)
                      +...++....+.+|..   .|.+++|+++  +|++++.+         +.|++||+.+..    .....|...+..++|+
T Consensus        43 d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S  122 (723)
T 1xfd_A           43 NVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG  122 (723)
T ss_dssp             CGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC
T ss_pred             ECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC
Confidence            3444555556666665   4899999866  88888764         788899987542    2233455568888888


Q ss_pred             --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC---------CCEeEE
Q 047325           92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS---------DAVSCM  160 (368)
Q Consensus        92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~  160 (368)
                        |+.|+.++. +.|++||+.+++..........                       ...+.++.         ..+.++
T Consensus       123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-----------------------~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-----------------------GVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-----------------------TTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-----------------------CceECcccceeEEEEeccCcceE
Confidence              778988886 7999999988764322211100                       00111122         234789


Q ss_pred             EEcCCCCEEEEEeCCC----------------------------------cEEEEEccCCeEEEEeecC------CCceE
Q 047325          161 SLDQDCGLLYTASWDR----------------------------------TFKVWRISDSKCLESVSAH------DDAVN  200 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~  200 (368)
                      +|+|||+.|++++.|+                                  .|++||+.+++....+..+      ...+.
T Consensus       179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~  258 (723)
T 1xfd_A          179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (723)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence            9999999999887553                                  7999999988765566544      56789


Q ss_pred             EEEeCCCC-eEEEEcC----CCeEEEEEcCCCCCCcccccceeec-cccccE----EEEEEcCCCCEEEE--ecCCC---
Q 047325          201 SVVSSSEG-LIFTGSA----DGTVKVWKREQHGKGTKHSLAQTLL-KQECAV----TALVVSSSRSIVYC--GSSDG---  265 (368)
Q Consensus       201 ~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i----~~~~~~~~~~~l~~--~~~dg---  265 (368)
                      .++|+||| .+++...    +..|++||+..+..      ..... .+...+    ..++|+|+|+.|+.  +..++   
T Consensus       259 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             EEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            99999999 5555432    35799999976521      22221 122223    37899999997775  44666   


Q ss_pred             ---cEEEEe-CCCccc--cceeeeccce--EEEEEEeCCCEEEEeeCC---CeEEEEecCCCceeeeEeeec---cccCe
Q 047325          266 ---LVNFWE-REKQLS--HGGVLKGHKL--AVLCLAAAGKLVFSGSAD---KTICVWRRDGAIHTCLSVLTG---HTGPV  331 (368)
Q Consensus       266 ---~i~i~d-~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~---h~~~v  331 (368)
                         .|.+|| ...+..  ......++..  ...+++||++.|+..+.+   +.+++|+++.........+..   |...+
T Consensus       333 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~  412 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY  412 (723)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred             ceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCe
Confidence               577777 343330  2222222222  235789999998766554   789999987543222333433   67779


Q ss_pred             eEEEEecCCeeeec
Q 047325          332 KCLAVEEDRDSSSS  345 (368)
Q Consensus       332 ~~l~~~~~~~~~~~  345 (368)
                      ..++|+|+|+.++.
T Consensus       413 ~~~~~spdg~~l~~  426 (723)
T 1xfd_A          413 FSASFSHSMDFFLL  426 (723)
T ss_dssp             CEEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999997764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=4.5e-21  Score=183.90  Aligned_cols=296  Identities=9%  Similarity=0.004  Sum_probs=200.4

Q ss_pred             eeeeccCcCCcEEEEEecCC--EEEEccCC------CcEEEEcCCc-ceecccCCCCCe-------eEEEEe--CCEEEE
Q 047325           36 LIGSLVREEGHIYSLAASKD--LLYTGSDS------KNIRVWKNLK-EFCGFKASSGLV-------KAIVIS--GEKIFT   97 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~d------g~i~iw~~~~-~~~~~~~~~~~v-------~~~~~~--~~~l~s   97 (368)
                      ....+.+|.+.+.+++|+++  +||+++.+      ..|++||+.. ....+..|...+       .+++|+  |+.+++
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            34567889999999999866  78877543      4799999874 355677888888       899998  666777


Q ss_pred             EeCC------CeEEEEeecCCCccccccCCcc-----------------------------------cc-----------
Q 047325           98 GHQD------GKIRVWKISPKNQSVHKRAGTL-----------------------------------PT-----------  125 (368)
Q Consensus        98 ~~~d------g~i~vw~~~~~~~~~~~~~~~~-----------------------------------~~-----------  125 (368)
                      ++.+      ..|.+|++.++...........                                   ..           
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7654      3577788766543221111000                                   00           


Q ss_pred             ---------ceee-eeccCCCC-ceeEec--ccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          126 ---------LKDI-FKSSIKPS-NYIEVR--RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       126 ---------~~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                               ...+ +....... .+..+.  ......+..|. .+...+|+|+++.|+.+. ++.|.+||+...+ +..+
T Consensus       204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l  280 (1045)
T 1k32_A          204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKI  280 (1045)
T ss_dssp             SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEEC
T ss_pred             CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeee
Confidence                     0000 00000000 011110  11122223333 456789999999888875 8999999995443 3355


Q ss_pred             ec-----------CCCceEEEEeC-CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc-cEEEEEEcCCCCEE
Q 047325          193 SA-----------HDDAVNSVVSS-SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-AVTALVVSSSRSIV  258 (368)
Q Consensus       193 ~~-----------~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l  258 (368)
                      ..           |...+.+++|+ |+| .+++++ ++.|.+|+.....       ...+..+.. .+..++|+ +++.|
T Consensus       281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred             ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence            44           33468999999 999 677666 8899999987541       233455666 89999999 99999


Q ss_pred             EEecCCCcEE-EEeCCCccccceeeeccce--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325          259 YCGSSDGLVN-FWEREKQLSHGGVLKGHKL--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA  335 (368)
Q Consensus       259 ~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~  335 (368)
                      +.++.++.+. +||+..+...  .+.+|..  ...+++||+++|++++.++.|++||+.++  +......+|...+.+++
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--~~~~~~~~~~~~v~~~~  427 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--KPTVIERSREAMITDFT  427 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCCEE
T ss_pred             EEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--ceEEeccCCCCCccceE
Confidence            9988888888 9998865433  2224433  44677889999999999999999999876  44455567999999999


Q ss_pred             EecCCeeeecCC
Q 047325          336 VEEDRDSSSSTS  347 (368)
Q Consensus       336 ~~~~~~~~~~~~  347 (368)
                      |+|||+.+++++
T Consensus       428 ~SpDG~~la~~~  439 (1045)
T 1k32_A          428 ISDNSRFIAYGF  439 (1045)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             ECCCCCeEEEEe
Confidence            999999877653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=2.4e-21  Score=174.70  Aligned_cols=252  Identities=10%  Similarity=0.026  Sum_probs=177.0

Q ss_pred             CCcEEEEEec--CCEEEEccC-CCcEEEEcCCcc-eecccCCC-CCeeEEEEeCC-EEEEEeC---CCeEEEEeecC--C
Q 047325           44 EGHIYSLAAS--KDLLYTGSD-SKNIRVWKNLKE-FCGFKASS-GLVKAIVISGE-KIFTGHQ---DGKIRVWKISP--K  112 (368)
Q Consensus        44 ~~~i~~~~~~--~~~l~s~~~-dg~i~iw~~~~~-~~~~~~~~-~~v~~~~~~~~-~l~s~~~---dg~i~vw~~~~--~  112 (368)
                      ..+|++++|+  |+.||+++. ||+++||++... ...+..|. ..+..+.|+++ .+++++.   +...++|.++.  .
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            4568888876  558888877 999999997543 33445555 58899999844 4555554   45667776654  2


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEE
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      .......                                 ....+...+|+|+++ .+++.+.++.+.+||+.+++....
T Consensus       101 g~~~~l~---------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l  147 (582)
T 3o4h_A          101 GEEQRLE---------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL  147 (582)
T ss_dssp             TCCEECT---------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             Ccccccc---------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence            2111110                                 112334567788775 334444455566999999887665


Q ss_pred             eecCCCceEEEEeCCCC-eEEEEcCC----CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-
Q 047325          192 VSAHDDAVNSVVSSSEG-LIFTGSAD----GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-  265 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  265 (368)
                      ...+.   .+++|+||| .|++++.+    +.|++||+..+.       ...+..+...+..++|+|||+.|+++..++ 
T Consensus       148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence            55443   789999999 77777766    789999987652       345567778899999999999999888888 


Q ss_pred             -cEEEEeCCCccccceeeeccceEE--E--------EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE
Q 047325          266 -LVNFWEREKQLSHGGVLKGHKLAV--L--------CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL  334 (368)
Q Consensus       266 -~i~i~d~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l  334 (368)
                       .|++||+.++...  ....|...+  .        +++|||.++++++.||.+++|++  +  +...   .+.+.|.++
T Consensus       218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~  288 (582)
T 3o4h_A          218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE---APQGNHGRV  288 (582)
T ss_dssp             EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEE
T ss_pred             eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEE
Confidence             8999999876554  334443222  2        38899999999999999999998  3  3332   344678999


Q ss_pred             EEecCCeeeecCCc
Q 047325          335 AVEEDRDSSSSTSS  348 (368)
Q Consensus       335 ~~~~~~~~~~~~~~  348 (368)
                      +|+ +++.+++++.
T Consensus       289 ~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          289 VLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEE-TTEEEEEEEE
T ss_pred             Eec-CCEEEEEEcC
Confidence            999 9987766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=9.4e-20  Score=154.45  Aligned_cols=276  Identities=13%  Similarity=0.137  Sum_probs=172.6

Q ss_pred             cCCcEEEEEecCC--EEEEccCC----CcEEEEcCCc--c----eecccCCCCCeeEEEEeCCEEEEEe-CCCeEEEEee
Q 047325           43 EEGHIYSLAASKD--LLYTGSDS----KNIRVWKNLK--E----FCGFKASSGLVKAIVISGEKIFTGH-QDGKIRVWKI  109 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~d----g~i~iw~~~~--~----~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~vw~~  109 (368)
                      |......++|+++  +|++++.+    +.|.+|++..  .    +.....+......+++++++|++++ .++.|.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            6677777888755  78888775    7999998653  1    2233345566777778888777776 5889999999


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCe-
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSK-  187 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~-  187 (368)
                      ............        ....          .........+...+.+++|+|+++++++++ .++.|.+|++.... 
T Consensus       128 ~~~g~~~~~~~~--------~~~~----------g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          128 GQDGALLPASDV--------IEFK----------GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN  189 (361)
T ss_dssp             CTTSCBCSCSEE--------EECC----------CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCCcCccccee--------EEcc----------CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence            765432211100        0000          000000001334578899999999776665 47899999887533 


Q ss_pred             ------E------EEEeecCCCceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325          188 ------C------LESVSAHDDAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       188 ------~------~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (368)
                            .      ......+...+..++|+|++ ++++++ .++.|.+||++.+.. ...........+......++|+|
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECT
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECC
Confidence                  1      11122344567899999999 566655 689999999974311 00111112223334568999999


Q ss_pred             CCCEEEEecCC--CcEEEEeCC--Cccc-cceeee-ccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEee-e
Q 047325          254 SRSIVYCGSSD--GLVNFWERE--KQLS-HGGVLK-GHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVL-T  325 (368)
Q Consensus       254 ~~~~l~~~~~d--g~i~i~d~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~  325 (368)
                      ++++|+++..+  +.|.+|++.  ++.. ...... +....-++++|++++|++++ .++.|.+|+++...++..... .
T Consensus       269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  348 (361)
T 3scy_A          269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD  348 (361)
T ss_dssp             TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC
T ss_pred             CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee
Confidence            99988776654  899999986  2221 111121 22334477889999888887 679999987764433433322 2


Q ss_pred             ccccCeeEEEEe
Q 047325          326 GHTGPVKCLAVE  337 (368)
Q Consensus       326 ~h~~~v~~l~~~  337 (368)
                      .+...+.|+.|.
T Consensus       349 ~~~~~p~~v~~~  360 (361)
T 3scy_A          349 IKVDKPVCLKFV  360 (361)
T ss_dssp             EECSSEEEEEEE
T ss_pred             eeCCCCeEEEEc
Confidence            244578898886

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.5e-21  Score=160.61  Aligned_cols=211  Identities=12%  Similarity=0.084  Sum_probs=150.7

Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR  176 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  176 (368)
                      .++.|+.|++||+.+++..                                 .+..|...|.+++|+|++++|++++ ++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~---------------------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~   62 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR---------------------------------VVWQTPELFEAPNWSPDGKYLLLNS-EG   62 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE---------------------------------EEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred             CCCcceeEEEEeCCCCcee---------------------------------eeccCCcceEeeEECCCCCEEEEEc-CC
Confidence            3467899999999876522                                 2234888999999999999999987 78


Q ss_pred             cEEEEEccC-CeEEEEeecC-CCceEEEEeCCCC-eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325          177 TFKVWRISD-SKCLESVSAH-DDAVNSVVSSSEG-LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV  251 (368)
Q Consensus       177 ~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  251 (368)
                      .|.+||+.+ ++.......+ ...+.+++|+|++ .|++++  .++...+|.++....     ....+..+ ..+..++|
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~-~~~~~~~~  136 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTKN-LPSYWHGW  136 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCSS-SSEEEEEE
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeecC-CCccceEE
Confidence            999999998 8777766665 3678899999999 777777  334555555543221     12222222 34888999


Q ss_pred             cCCCCEEE-EecCCCcEEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeecc
Q 047325          252 SSSRSIVY-CGSSDGLVNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       252 ~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      +|+++.|+ ++..++.+++|+++........+..+...  ..+++|++++|+.++ .++.+++|+++... ..+..+..|
T Consensus       137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~  215 (297)
T 2ojh_A          137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDS  215 (297)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCC
T ss_pred             CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-CCcEEEecC
Confidence            99999877 77889999999864322222333344433  356677899877665 58999999986332 345667778


Q ss_pred             ccCeeEEEEecCCeeeecCCc
Q 047325          328 TGPVKCLAVEEDRDSSSSTSS  348 (368)
Q Consensus       328 ~~~v~~l~~~~~~~~~~~~~~  348 (368)
                      ...+..++|+|+++.++.++.
T Consensus       216 ~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          216 AYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             SEEEEEEEECTTSSEEEEEEE
T ss_pred             CcccCCeEECCCCCEEEEEEc
Confidence            888999999999998776543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.5e-20  Score=157.67  Aligned_cols=251  Identities=10%  Similarity=0.091  Sum_probs=171.8

Q ss_pred             CCCceeeeccCcC-C-cEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccC-C----CCCeeEEEEe--CCEEEE
Q 047325           32 PQNGLIGSLVREE-G-HIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKA-S----SGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        32 ~~~~~~~~~~~h~-~-~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~-~----~~~v~~~~~~--~~~l~s   97 (368)
                      ...+.+..+.... . .+..++++++   ++++++.++.|.+||+.+.  ...+.. +    ...+..++|+  +++|++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence            3445555544222 1 4677888654   4567777899999998643  222321 1    2256778887  678888


Q ss_pred             Ee------------CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           98 GH------------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        98 ~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      ++            .++.|.+||+.+++......                                 ....+.+++|+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~d  145 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------------------APRQITMLAWARD  145 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------------------CCSSCCCEEECTT
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEe---------------------------------CCCCcceeEECCC
Confidence            86            57999999998765322111                                 2345678899999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-CCC-----------------------eEE
Q 047325          166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-ADG-----------------------TVK  220 (368)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg-----------------------~i~  220 (368)
                      +++|+++  ++.|.+||+.+++.+..+..+... ..+.++|++ .++..+ .++                       .|.
T Consensus       146 g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          146 GSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            9988887  688999999999988777654311 123778888 444333 233                       468


Q ss_pred             EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEE
Q 047325          221 VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF  300 (368)
Q Consensus       221 i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  300 (368)
                      +||++....     .......+...+.+++|+|++++++++  ++.|.+||+.+++.......++....+++++++++|+
T Consensus       223 ~~d~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  295 (337)
T 1pby_B          223 TMDLETGEM-----AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEETTTCCE-----EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             EEeCCCCCc-----eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEE
Confidence            999876532     122334455678899999999999988  7999999998876554443344455577888999999


Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeecc
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      +++.++.|++||+.+.  +.+..+..+
T Consensus       296 ~~~~~~~i~v~d~~~~--~~~~~~~~~  320 (337)
T 1pby_B          296 LGGALGDLAAYDAETL--EKKGQVDLP  320 (337)
T ss_dssp             EESBSSEEEEEETTTC--CEEEEEECG
T ss_pred             EEcCCCcEEEEECcCC--cEEEEEEcC
Confidence            9999999999999876  455555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=5.3e-20  Score=154.07  Aligned_cols=249  Identities=9%  Similarity=0.073  Sum_probs=165.5

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EEE-EccCCCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LLY-TGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~-s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      +...++++..+..+...+ +++++++  +++ ++..++.|.+||....   ...+..+..+..+++|+  +++++++..+
T Consensus        26 d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           26 STDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             ETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             eCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCC
Confidence            345566666666666667 8888754  444 4555899999998643   34455566666658887  7788855555


Q ss_pred             C---eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCc
Q 047325          102 G---KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRT  177 (368)
Q Consensus       102 g---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~  177 (368)
                      +   .|.+||+.+++......                                 ......+++|+|++++++++ ..++.
T Consensus       105 ~~~~~i~v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A          105 NHPFNMQSYSFLKNKFISTIP---------------------------------IPYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             SSSCEEEEEETTTTEEEEEEE---------------------------------CCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             CCcccEEEEECCCCCeEEEEE---------------------------------CCCCccceEECCCCCEEEEEecCCCc
Confidence            3   89999998765322111                                 33456899999999866555 55588


Q ss_pred             -EEEEEccCCeEE----EEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325          178 -FKVWRISDSKCL----ESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       178 -i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  250 (368)
                       |.+|++.....+    ............++|+|++ .+ +++..++.|.+||++....   ......+. ....+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~---~~~~~~~~-~~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN---ITLLNAVG-TNNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS---CEEEEEEE-CSSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc---cceeeecc-CCCCCceEE
Confidence             999998754322    1122344567899999999 44 5555789999999986532   01122332 335677899


Q ss_pred             EcCCCCEEEEec-CCCcEEEEeCCCccccc-eeeec------cc---eEEEEEEeCCCEEEEee-CCCeEEEEecCCC
Q 047325          251 VSSSRSIVYCGS-SDGLVNFWEREKQLSHG-GVLKG------HK---LAVLCLAAAGKLVFSGS-ADKTICVWRRDGA  316 (368)
Q Consensus       251 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~------~~---~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~  316 (368)
                      |+|+++++++++ .++.|.+||+++++... .....      ..   ...++++|++++|++++ .++.|.+||+...
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            999999776554 57889999998765411 11111      11   12258899999886555 5679999999775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=8.5e-22  Score=170.26  Aligned_cols=187  Identities=11%  Similarity=0.125  Sum_probs=137.2

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe----------EEEE-----eecCCCceEEEEeCCCC-eEE----EE
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK----------CLES-----VSAHDDAVNSVVSSSEG-LIF----TG  213 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~-~l~----~~  213 (368)
                      ...++.+++++++.++++++.++ +++|+.....          .+..     .-.+...|.+++|+|++ +|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578899999999999999887 8998753210          0110     11245679999999999 777    78


Q ss_pred             cCCCeEEEEEcCCCC-----CCcccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccce
Q 047325          214 SADGTVKVWKREQHG-----KGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       214 ~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      +.|+.|++||++...     ..........+.+|...|.+++|+|+ +++|++++.||.|++||++++... ....+|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCC
Confidence            889999999986531     00111123445678999999999997 789999999999999999987443 33445655


Q ss_pred             EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-------cccCeeEEEEecCCeeeec
Q 047325          288 AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-------HTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       288 ~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~  345 (368)
                      .+  ++++|++++|++|+.||.|++||++.   .....+..       |...|.+++|++++.++++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTC---CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccCC---cccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            55  45566899999999999999999873   22233322       3348999999999998743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=9.3e-20  Score=153.91  Aligned_cols=219  Identities=9%  Similarity=0.083  Sum_probs=157.9

Q ss_pred             CCCeeEEEEe--CCEEEEEeC-------CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           82 SGLVKAIVIS--GEKIFTGHQ-------DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        82 ~~~v~~~~~~--~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ...+..++++  ++++++++.       ++.|.+||..+++......                                 
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------------------------   86 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH---------------------------------   86 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence            3456788888  678887774       5689999998776432221                                 


Q ss_pred             cCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCc---------eEEEEeCCCC-eEEEEc--CCCeE
Q 047325          153 HSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDA---------VNSVVSSSEG-LIFTGS--ADGTV  219 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~-~l~~~~--~dg~i  219 (368)
                      ....+..++++|++++++++ ..++.|.+||+.+++.+..+..+...         +.+++++|++ .+++++  .++.|
T Consensus        87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI  166 (353)
T ss_dssp             ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred             cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence            23446779999999966555 45799999999999988888765422         6889999998 555554  58899


Q ss_pred             EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-----ccceEEEEEEe
Q 047325          220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-----GHKLAVLCLAA  294 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~  294 (368)
                      .+||.+...      ....+..+...+..++|+|+++++++++.++.|.+||..+++.......     .+...-++++|
T Consensus       167 ~~~d~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          167 WVVDGGNIK------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEETTTTE------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEcCCCCc------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            999997652      3333433445578899999999999999999999999988765533322     12223367889


Q ss_pred             CCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          295 AGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       295 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      +++++++++. ++.|.+||..+.  +.+..+....  ...++|+|+++.+
T Consensus       241 dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~--~~~~~~s~dg~~l  286 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDTRNG--NILAKVAAPE--SLAVLFNPARNEA  286 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEETTTC--CEEEEEECSS--CCCEEEETTTTEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCC--CceEEECCCCCEE
Confidence            9997776665 599999999776  4444554332  2679999999843

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=3e-19  Score=151.34  Aligned_cols=262  Identities=9%  Similarity=0.112  Sum_probs=165.3

Q ss_pred             cCCCcEEEEcCC--cc----eecccCCCCCeeEEEEe--CCEEEEEeCC----CeEEEEeecCCCccccccCCcccccee
Q 047325           61 SDSKNIRVWKNL--KE----FCGFKASSGLVKAIVIS--GEKIFTGHQD----GKIRVWKISPKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        61 ~~dg~i~iw~~~--~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~  128 (368)
                      +.++.|.+|++.  +.    +...  +......++|+  +++|++++.+    +.|.+|+++........          
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~----------   91 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL----------   91 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE----------
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE----------
Confidence            456789999653  21    1222  66677778887  7789998886    89999998764210000          


Q ss_pred             eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEe------ec-------
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESV------SA-------  194 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~------~~-------  194 (368)
                                        ......+......+++  ++++|++++ .++.|.+|++.....+..+      .+       
T Consensus        92 ------------------~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~  151 (361)
T 3scy_A           92 ------------------LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKER  151 (361)
T ss_dssp             ------------------EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred             ------------------eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence                              0001113445667777  777777776 5789999999754322211      11       


Q ss_pred             -CCCceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCC------Cccc-ccceeeccccccEEEEEEcCCCCEEEEec-C
Q 047325          195 -HDDAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGK------GTKH-SLAQTLLKQECAVTALVVSSSRSIVYCGS-S  263 (368)
Q Consensus       195 -~~~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~------~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  263 (368)
                       +...+.+++|+|++ ++++ ...++.|.+|++.....      .... ............+..++|+|+++++++++ .
T Consensus       152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence             12345789999999 4544 44589999999875431      0000 00112223445678999999999887766 6


Q ss_pred             CCcEEEEeCCCccccc-eeeecc-----ceEEEEEEeCCCEEEEeeC--CCeEEEEecC--CCceeeeEeeeccccCeeE
Q 047325          264 DGLVNFWEREKQLSHG-GVLKGH-----KLAVLCLAAAGKLVFSGSA--DKTICVWRRD--GAIHTCLSVLTGHTGPVKC  333 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~--~~~~~~~~~~~~h~~~v~~  333 (368)
                      ++.|.+||+.++.... ......     ...-++++||+++|+++..  ++.|.+|+++  ++....+..+.. ...+.+
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~  310 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRN  310 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCE
T ss_pred             CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCce
Confidence            8999999988543211 111111     1235678899998877665  4899999996  333345555554 567889


Q ss_pred             EEEecCCeeeecCC---cceEEEEE
Q 047325          334 LAVEEDRDSSSSTS---SCAQRWIV  355 (368)
Q Consensus       334 l~~~~~~~~~~~~~---~~~~~w~l  355 (368)
                      ++|+|+|+++++++   +.+.+|.+
T Consensus       311 ~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEE
Confidence            99999999766543   33455444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1e-18  Score=147.17  Aligned_cols=254  Identities=13%  Similarity=0.140  Sum_probs=160.5

Q ss_pred             ccCcCCcEEEEEecCC-EEEEccC---CCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEe
Q 047325           40 LVREEGHIYSLAASKD-LLYTGSD---SKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWK  108 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~-~l~s~~~---dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~  108 (368)
                      ...+...+..++|+++ .|++++.   ++.|++|++...    +..+..+...+..++|+  +++|++++ .++.|.+|+
T Consensus        35 ~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            3445566777888765 3554443   689999998532    22334567788889988  77888887 789999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCe
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSK  187 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~  187 (368)
                      +...........        .......+.            ...+...+.+++|+|+++++++...++.|.+||+. +++
T Consensus       115 ~~~~g~~~~~~~--------~~~~~~~p~------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          115 IAADGALTLTDT--------VQHSGHGPR------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             ECTTSCEEEEEE--------EECCCCCSS------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             eCCCCCeeecce--------eecCCCCCC------------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence            964321110000        000000000            00133458899999999966666668899999998 554


Q ss_pred             EEE--EeecC-CCceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeeccc------cccEEEEEEcCCCC
Q 047325          188 CLE--SVSAH-DDAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQ------ECAVTALVVSSSRS  256 (368)
Q Consensus       188 ~~~--~~~~~-~~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~  256 (368)
                      ...  .+..+ ...+..++|+|+| ++++ ...++.|.+|+++....  ...........      ...+..++|+|+++
T Consensus       175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            332  22222 3367889999999 4544 56789999999875211  11111122111      14588999999999


Q ss_pred             EEE-EecCCCcEEEEeCCCcc--ccceeeecc--ceEEEEEEeCCCEEEEeeC-CCeEEEEecCC
Q 047325          257 IVY-CGSSDGLVNFWEREKQL--SHGGVLKGH--KLAVLCLAAAGKLVFSGSA-DKTICVWRRDG  315 (368)
Q Consensus       257 ~l~-~~~~dg~i~i~d~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~  315 (368)
                      +|+ +...++.|.+|++....  ........+  ...-++++|++++|++++. ++.|.+|+++.
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            874 55568999999987321  111222222  2344778899998888775 48999996654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=7.2e-20  Score=154.32  Aligned_cols=239  Identities=8%  Similarity=0.116  Sum_probs=160.1

Q ss_pred             CCEEEEccCCCcEEEEcCCcc--eecccCCC-CCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           54 KDLLYTGSDSKNIRVWKNLKE--FCGFKASS-GLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        54 ~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      +.++++++.+++|++||..+.  ...+..+. ..+..++++  +++++ ++..++.|.+||+.+++..........+.  
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~--   88 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG--   88 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT--
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc--
Confidence            448899999999999998753  23333332 256788887  66554 55578999999998775432221110000  


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC------------CcEEEEEccCCeE---EEEe
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD------------RTFKVWRISDSKC---LESV  192 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~  192 (368)
                                              .....+..++|+|+++++++++.+            +.|.+||+.+++.   +..+
T Consensus        89 ------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           89 ------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             ------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             ------------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence                                    012336789999999999998865            8999999988543   3344


Q ss_pred             ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce-------------------------e---------
Q 047325          193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ-------------------------T---------  238 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~---------  238 (368)
                      . +...+.+++|+|++.+++++.  .|.+||+.............                         .         
T Consensus       145 ~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  221 (349)
T 1jmx_B          145 P-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  221 (349)
T ss_dssp             E-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             c-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence            3 334688899999996555543  49999987653211000000                         0         


Q ss_pred             ----------------------------eccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE
Q 047325          239 ----------------------------LLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV  289 (368)
Q Consensus       239 ----------------------------~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  289 (368)
                                                  .......+..++++| ++++++++  ++.|.+||+++++.......++....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~  299 (349)
T 1jmx_B          222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYC  299 (349)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccc
Confidence                                        000112456778889 99999988  88999999998766544444445555


Q ss_pred             EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          290 LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       290 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +++++++++|++++.++.|++||+++.  +.+..+.
T Consensus       300 ~~~s~dg~~l~~~~~~~~v~v~d~~~~--~~~~~~~  333 (349)
T 1jmx_B          300 VAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIK  333 (349)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTT--EEEEEEE
T ss_pred             eEECCCCCEEEEecCCCeEEEEecccc--ceeeeee
Confidence            788889998888888999999998876  4455544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=9.6e-20  Score=153.55  Aligned_cols=211  Identities=8%  Similarity=0.021  Sum_probs=144.5

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT  171 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  171 (368)
                      +.++++++.++.|.+||+.+++........                               ....+..++|+|+++++++
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~dg~~~~v   59 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAPDNRTAYV   59 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECTTSSEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECCCCCEEEE
Confidence            567889999999999999877543222110                               1124678999999986654


Q ss_pred             -EeCCCcEEEEEccCCeEEEEeecCC------CceEEEEeCCCC-eEEEEcCC------------CeEEEEEcCCCCCCc
Q 047325          172 -ASWDRTFKVWRISDSKCLESVSAHD------DAVNSVVSSSEG-LIFTGSAD------------GTVKVWKREQHGKGT  231 (368)
Q Consensus       172 -~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~d------------g~i~i~d~~~~~~~~  231 (368)
                       ...++.|.+||+.+++.+..+....      ..+..++++|++ ++++++.+            +.|.+||+..+..  
T Consensus        60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--  137 (349)
T 1jmx_B           60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--  137 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--
T ss_pred             EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--
Confidence             4568899999999999887776432      237889999999 77777755            8999999976321  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--------------------------
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--------------------------  285 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------  285 (368)
                       ........ +...+.+++|+|+++ +++++.  .|.+||..+++.......+.                          
T Consensus       138 -~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          138 -AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             -BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             -cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence             11122222 333578899999999 555543  49999987654332111110                          


Q ss_pred             -------------------------------------------ceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          286 -------------------------------------------KLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       286 -------------------------------------------~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                                                                 .....+++| ++++++++  ++.|.+||+.+.  +.+
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~  288 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLI  288 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEE
Confidence                                                       011234557 89999888  889999999876  444


Q ss_pred             EeeeccccCeeEEEEecCCeeeec
Q 047325          322 SVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       322 ~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      ..+. ....+.+++|+|++..+++
T Consensus       289 ~~~~-~~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          289 KAAN-LDHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EEEE-CSSCCCEEEECSSSSCEEE
T ss_pred             EEEc-CCCCccceEECCCCCEEEE
Confidence            5554 3345789999999985543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=2.9e-20  Score=167.69  Aligned_cols=215  Identities=8%  Similarity=0.048  Sum_probs=146.9

Q ss_pred             CCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CC
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DA  156 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  156 (368)
                      +..+|.+++|+  |++|++++. ||+++||++++++.....                                 .+. ..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------~~~~~~   66 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------REPINS   66 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------SSCCSE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------cccccc
Confidence            35579999887  889998887 999999998655432211                                 133 57


Q ss_pred             EeEEEEcCCCCEEEEEeC---CCcEEEEEccC---CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCC
Q 047325          157 VSCMSLDQDCGLLYTASW---DRTFKVWRISD---SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~  228 (368)
                      +..+.|+|| +.+++++.   +....+|.+..   +... .+.... .+...+|+|++  .+++.+.++.+.+||+..+.
T Consensus        67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            899999999 77777765   45566665533   2222 333222 23355667666  44444455556699997652


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEe
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSG  302 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~  302 (368)
                             ...+..+..  .+++|+|||++|++++.+    +.|++||+.+++..  .+..|...+  .+++|||+.|+++
T Consensus       144 -------~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~  212 (582)
T 3o4h_A          144 -------LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGL  212 (582)
T ss_dssp             -------EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEE
T ss_pred             -------EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEc
Confidence                   122222222  789999999999988777    78999999876543  445555444  6778899999988


Q ss_pred             eCCC--eEEEEecCCCceeeeEeeeccccCeeEEE--------EecCCeeeec
Q 047325          303 SADK--TICVWRRDGAIHTCLSVLTGHTGPVKCLA--------VEEDRDSSSS  345 (368)
Q Consensus       303 ~~dg--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~  345 (368)
                      ..++  .|++||++++.  .. .+.+|...+..++        |+|||.++++
T Consensus       213 ~~~~~~~i~~~d~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  262 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGS--VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV  262 (582)
T ss_dssp             ECSSCEEEEEECTTTCC--EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred             cCCCeeEEEEEcCCCCc--EE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence            8888  89999988763  33 5667777777777        9999974333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.1e-18  Score=146.56  Aligned_cols=271  Identities=7%  Similarity=-0.002  Sum_probs=172.9

Q ss_pred             CCCceeeeccCcCCcEEE-----EEec--CCEEEEccC-CCc--EEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEE
Q 047325           32 PQNGLIGSLVREEGHIYS-----LAAS--KDLLYTGSD-SKN--IRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFT   97 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~-----~~~~--~~~l~s~~~-dg~--i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s   97 (368)
                      ..+..+..+..|.+....     .+|+  ++.|+.++. +|.  |.+||+...  ......+...+..+.|+  ++.|+.
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence            345556677777776665     5666  447777766 674  777887643  22334454455456676  889999


Q ss_pred             EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE--EEcCCCCEEEEE---
Q 047325           98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM--SLDQDCGLLYTA---  172 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~---  172 (368)
                      ++.++.|++||+.+++......                                .+...+...  .++|++.+++..   
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~  145 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQ--------------------------------VPAEWVGYGTWVANSDCTKLVGIEIR  145 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEE--------------------------------CCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcceeeee--------------------------------chhhcccccceeECCCCCeecccccc
Confidence            9999999999999876432211                                133333323  347888877643   


Q ss_pred             -------------------eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCC------CeEEEEEcC
Q 047325          173 -------------------SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSAD------GTVKVWKRE  225 (368)
Q Consensus       173 -------------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~i~d~~  225 (368)
                                         ..+..|.+||+.+++..... .+...+..+.|+| ++ .|+....+      ..|.++|..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence                               23468999999988755443 4566789999999 88 66555543      378888876


Q ss_pred             CCCCCcccccceeecccc--ccEEEEEEcCCCCEEEEecC-CC----cEEEEeCCCccccc-eeeeccceEE-----EEE
Q 047325          226 QHGKGTKHSLAQTLLKQE--CAVTALVVSSSRSIVYCGSS-DG----LVNFWEREKQLSHG-GVLKGHKLAV-----LCL  292 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~-~~~~~~~~~~-----~~~  292 (368)
                      ...       ...+..+.  ..+...+|+|+|+.|+..+. ++    .|++||+.+++... ....++....     ..+
T Consensus       225 ~~~-------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~  297 (388)
T 3pe7_A          225 GTN-------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM  297 (388)
T ss_dssp             SCC-------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred             CCc-------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence            431       22222333  35778899999997765433 22    39999998765321 1122211111     268


Q ss_pred             EeCCCEEEEe---------eCCCeEEEEecCCCceeeeEeeecccc-----------CeeEEEEecCCeeeec
Q 047325          293 AAAGKLVFSG---------SADKTICVWRRDGAIHTCLSVLTGHTG-----------PVKCLAVEEDRDSSSS  345 (368)
Q Consensus       293 ~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~  345 (368)
                      +|||+.|+..         ..+..|++||++++..   ..+..+..           .+.+++|+|||+.++.
T Consensus       298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EEEECCC------------CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             ccCCCcceeEeeeccccccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            9999887754         4567899999987633   33444544           5788999999986553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=7.6e-19  Score=148.97  Aligned_cols=238  Identities=11%  Similarity=0.107  Sum_probs=152.8

Q ss_pred             CCCeeEEEEe--CCEEEEEeCCCeEEEEeec-CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKIS-PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ...+..++++  +++|++++.+ .|.+|++. +++.......                              ..+ +.+.
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------~~~-g~~~   86 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------PIG-GHPR   86 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------------ECC-SSGG
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------------ecC-CCCc
Confidence            3467788887  7789999888 99999997 5432110000                              001 1244


Q ss_pred             EEEEcCCCCE--EEEEe-------------CCCcEEEEEcc-CCeEEEEee----cCCCceEEEEeCCCC-eEEEEc-CC
Q 047325          159 CMSLDQDCGL--LYTAS-------------WDRTFKVWRIS-DSKCLESVS----AHDDAVNSVVSSSEG-LIFTGS-AD  216 (368)
Q Consensus       159 ~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~-~l~~~~-~d  216 (368)
                      +++|+|++++  ++++.             .++.+.+|++. +++....+.    .+...+.+++|+|+| +++++. .+
T Consensus        87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~  166 (365)
T 1jof_A           87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA  166 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence            5889999984  44543             68999999997 466544443    245678999999999 666654 46


Q ss_pred             CeEEEEEcC-CCCCCcccccceeec--cccccEEEEEEcCCCCEEEEecC-CCcEEEEeCC--Ccccc-----ceee---
Q 047325          217 GTVKVWKRE-QHGKGTKHSLAQTLL--KQECAVTALVVSSSRSIVYCGSS-DGLVNFWERE--KQLSH-----GGVL---  282 (368)
Q Consensus       217 g~i~i~d~~-~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~-----~~~~---  282 (368)
                      +.|++||+. .+..    .......  .+...+..++|+|++++|++++. ++.|.+|++.  +++..     ....   
T Consensus       167 ~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          167 NKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             TEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             CEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            899999997 3311    1112222  23566899999999999887764 6899999865  33221     0111   


Q ss_pred             -eccc--------eEEEE-EEeCCCEEEEeeCC-C-----eEEEEecC-CCceeeeE-eeeccccCeeEEEEec---CCe
Q 047325          283 -KGHK--------LAVLC-LAAAGKLVFSGSAD-K-----TICVWRRD-GAIHTCLS-VLTGHTGPVKCLAVEE---DRD  341 (368)
Q Consensus       283 -~~~~--------~~~~~-~~~~~~~l~~~~~d-g-----~i~iw~~~-~~~~~~~~-~~~~h~~~v~~l~~~~---~~~  341 (368)
                       .+|.        ..-.+ ++|||++|+++..+ +     .|.+|+++ ++....+. ....+...+..++|+|   +|+
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence             1222        33466 88999988877643 2     89999996 33222222 2334555678899999   898


Q ss_pred             eeecCC---cceEEEEE
Q 047325          342 SSSSTS---SCAQRWIV  355 (368)
Q Consensus       342 ~~~~~~---~~~~~w~l  355 (368)
                      ++++++   +.+.+|.+
T Consensus       323 ~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          323 WMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEECSSSCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEE
Confidence            766553   33455544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=2.2e-19  Score=166.04  Aligned_cols=271  Identities=6%  Similarity=-0.036  Sum_probs=173.2

Q ss_pred             EEEecCC-EEEEccCCCcEEEEcCCcce--ecccCCCC---CeeEEEEe--CCEEEEEeC---------CCeEEEEeecC
Q 047325           49 SLAASKD-LLYTGSDSKNIRVWKNLKEF--CGFKASSG---LVKAIVIS--GEKIFTGHQ---------DGKIRVWKISP  111 (368)
Q Consensus        49 ~~~~~~~-~l~s~~~dg~i~iw~~~~~~--~~~~~~~~---~v~~~~~~--~~~l~s~~~---------dg~i~vw~~~~  111 (368)
                      +++|+++ .++..+.|++|++||+....  ..+..|..   .+.+++|+  |++|++++.         ++.|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            4566654 34444569999999987532  22333322   48889998  888988876         78999999988


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      ++......                                 ....+..++|+|||+.|+.+. ++.|++||+.+++....
T Consensus       100 g~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l  145 (719)
T 1z68_A          100 GEFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI  145 (719)
T ss_dssp             TEECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             Ccccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence            76411011                                 123577899999999999886 78999999988876543


Q ss_pred             e-ecCCCce-----------------EEEEeCCCC-eEEEEcCCC----------------------------------e
Q 047325          192 V-SAHDDAV-----------------NSVVSSSEG-LIFTGSADG----------------------------------T  218 (368)
Q Consensus       192 ~-~~~~~~v-----------------~~~~~~~~~-~l~~~~~dg----------------------------------~  218 (368)
                      . .++...+                 .+++|+||| .|++++.|.                                  .
T Consensus       146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~  225 (719)
T 1z68_A          146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR  225 (719)
T ss_dssp             CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred             ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence            3 2222222                 489999999 787776542                                  7


Q ss_pred             EEEEEcCCCCCC--cccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEe----CCCccccceee---ecc
Q 047325          219 VKVWKREQHGKG--TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWE----REKQLSHGGVL---KGH  285 (368)
Q Consensus       219 i~i~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~  285 (368)
                      |++||+..+...  ........+..+...+..++|+||++++++....    ..|.+||    ..++.......   ..|
T Consensus       226 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~  305 (719)
T 1z68_A          226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR  305 (719)
T ss_dssp             EEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS
T ss_pred             EEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC
Confidence            889998754210  0000001234577889999999998777764332    2488899    77655442221   334


Q ss_pred             ceE-------EEEEEeCCCEEEE--eeCCCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC-------
Q 047325          286 KLA-------VLCLAAAGKLVFS--GSADKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS-------  347 (368)
Q Consensus       286 ~~~-------~~~~~~~~~~l~~--~~~dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-------  347 (368)
                      ...       ...++|||+.|+.  +..+|.  |.+|++.+..   ...+..+...+..+.++ ++..++...       
T Consensus       306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~  381 (719)
T 1z68_A          306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYP  381 (719)
T ss_dssp             SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred             CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence            332       3568899985543  445664  6666665542   34455566668888777 666554332       


Q ss_pred             cceEEEEEee
Q 047325          348 SCAQRWIVYS  357 (368)
Q Consensus       348 ~~~~~w~l~s  357 (368)
                      +..++|.+-.
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            3467777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.8e-18  Score=160.00  Aligned_cols=282  Identities=9%  Similarity=0.026  Sum_probs=174.8

Q ss_pred             cCCCceeeeccCcCC---cEEEEEecCC--EEEEccC---------CCcEEEEcCCcceec-ccCCCCCeeEEEEe--CC
Q 047325           31 LPQNGLIGSLVREEG---HIYSLAASKD--LLYTGSD---------SKNIRVWKNLKEFCG-FKASSGLVKAIVIS--GE   93 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~---~i~~~~~~~~--~l~s~~~---------dg~i~iw~~~~~~~~-~~~~~~~v~~~~~~--~~   93 (368)
                      ...++....+.+|..   .|.+++|+++  +|++++.         |+.|++||+.+.... .......+..++|+  |+
T Consensus        43 ~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~  122 (719)
T 1z68_A           43 IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS  122 (719)
T ss_dssp             SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT
T ss_pred             cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC
Confidence            344444444444443   3888888765  8887766         789999998755331 01112568888888  77


Q ss_pred             EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC---------EeEEEEcC
Q 047325           94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA---------VSCMSLDQ  164 (368)
Q Consensus        94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~  164 (368)
                      .|+.+. |+.|++|++.+++.......+.                       ...++.|+...         ..+++|+|
T Consensus       123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~-----------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          123 KLAYVY-QNNIYLKQRPGDPPFQITFNGR-----------------------ENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEECCCCCB-----------------------TTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             EEEEEE-CCeEEEEeCCCCCcEEEecCCC-----------------------cCCeEcccccceeeeecccCcccEEECC
Confidence            888876 7899999998876432221110                       00112223322         25899999


Q ss_pred             CCCEEEEEeCCC----------------------------------cEEEEEccCCeEE--------EEeecCCCceEEE
Q 047325          165 DCGLLYTASWDR----------------------------------TFKVWRISDSKCL--------ESVSAHDDAVNSV  202 (368)
Q Consensus       165 ~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~v~~~  202 (368)
                      ||++|++++.|.                                  .|++||+.+++..        ..+.+|...+..+
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            999999987652                                  7889999887642        1233577889999


Q ss_pred             EeCCCC-eEEEEcC--C--CeEEEEE----cCCCCCCcccccceee----ccccccEE-----EEEEcCCCCEEEE--ec
Q 047325          203 VSSSEG-LIFTGSA--D--GTVKVWK----REQHGKGTKHSLAQTL----LKQECAVT-----ALVVSSSRSIVYC--GS  262 (368)
Q Consensus       203 ~~~~~~-~l~~~~~--d--g~i~i~d----~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~  262 (368)
                      +|+||+ .+++...  +  ..|.+||    ...+..      ....    ..+...+.     .+.|+|+|+.|+.  ..
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            999999 4444332  2  3488888    554321      1112    24444454     7889999996554  44


Q ss_pred             CCC--cEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCC-----CeEEEEecCCCcee-eeEee----eccc
Q 047325          263 SDG--LVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSAD-----KTICVWRRDGAIHT-CLSVL----TGHT  328 (368)
Q Consensus       263 ~dg--~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~-~~~~~----~~h~  328 (368)
                      .+|  .|.+||+.++..  ..+..+...+  ..+. +++.|+..+.+     +..++|.++..... ....+    .+|.
T Consensus       333 ~~g~~~l~~~~~~~~~~--~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~  409 (719)
T 1z68_A          333 KDGYKHIHYIKDTVENA--IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER  409 (719)
T ss_dssp             TTSCEEEEEESSCSTTC--EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred             cCCceEEEEEECCCCce--EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence            555  567777766542  2333333222  2333 77766665554     88999988652111 11222    2366


Q ss_pred             cCeeEEEEecCCeeeec
Q 047325          329 GPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       329 ~~v~~l~~~~~~~~~~~  345 (368)
                      ..+..+.|+|+++.++.
T Consensus       410 ~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          410 CQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             BCBEEEEECGGGSSEEE
T ss_pred             CceEEEEECCCCCEEEE
Confidence            77889999999987663

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1.4e-17  Score=152.53  Aligned_cols=284  Identities=11%  Similarity=0.028  Sum_probs=180.6

Q ss_pred             eeccCcCCcEEEEEecCC--EEEEc--cCCCcEEEEcCC--cceecccCCCCCee---------EEEEe----CCE-EEE
Q 047325           38 GSLVREEGHIYSLAASKD--LLYTG--SDSKNIRVWKNL--KEFCGFKASSGLVK---------AIVIS----GEK-IFT   97 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~--~l~s~--~~dg~i~iw~~~--~~~~~~~~~~~~v~---------~~~~~----~~~-l~s   97 (368)
                      ..+.+|...+..++++++  ++++.  +.++...||...  .....+..+...+.         ...+.    |+. |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            346788999999999988  44555  568889999742  33445555655555         45444    777 665


Q ss_pred             EeC-CCeEEEEeec--C-CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325           98 GHQ-DGKIRVWKIS--P-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS  173 (368)
Q Consensus        98 ~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  173 (368)
                      ++. +..|.++++.  . ++.........                            ..|...+..++|+|||+.|+.++
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~----------------------------~~~~~~~~~~~~spDg~~l~~~~  148 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSA----------------------------VGGGLRWADPVLLPERGEVWCMA  148 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCC----------------------------STTCEEEEEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCcc----------------------------CCCCccccCcEECCCCCEEEEEE
Confidence            553 4556666654  2 22111110000                            00345678899999999999988


Q ss_pred             CC----------CcEEEEEccC------CeEEEEee-cCCCceEEEEeCCCC-eEEEEcCC--------CeEEEEEcCCC
Q 047325          174 WD----------RTFKVWRISD------SKCLESVS-AHDDAVNSVVSSSEG-LIFTGSAD--------GTVKVWKREQH  227 (368)
Q Consensus       174 ~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~i~d~~~~  227 (368)
                      .+          ..|.+||+.+      ++.. .+. .+...+..++|+||| .|+.++.+        ..|++||+...
T Consensus       149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             EEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence            76          5899999987      5543 444 555678889999999 77766644        47999999732


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC--cEEEEeCCCccccceeeeccc----------eEEEEEEeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG--LVNFWEREKQLSHGGVLKGHK----------LAVLCLAAA  295 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~  295 (368)
                      +.  ..........+...+..+.|+|||++++++..++  .|.+||..++... .....+.          ....+++++
T Consensus       228 g~--~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          228 GR--FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             SC--EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred             Cc--ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCC
Confidence            10  0012222334467899999999999888888888  6666776544322 1111111          123556678


Q ss_pred             CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE-EEecCCeeeecCC--cceEEEEE
Q 047325          296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL-AVEEDRDSSSSTS--SCAQRWIV  355 (368)
Q Consensus       296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~--~~~~~w~l  355 (368)
                      ++++++++. +.+++|.++..... +..+..|...+..+ +++++...+++++  ....+|.+
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence            999999998 99999955432223 56667777778877 6655554444333  23456654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=1.1e-16  Score=134.09  Aligned_cols=257  Identities=9%  Similarity=0.088  Sum_probs=168.5

Q ss_pred             CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      ..|.+++|+++  .++..+.++.++.| ..+....+..+...+.+++|+  ++.++++..++.|.+||.++++.....  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--
T ss_pred             cccceeeecCCccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--
Confidence            34566777655  55566778889999 344455566666778899998  666667888999999998776532111  


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC----CcEEEEEccCCeEEEEee--c
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD----RTFKVWRISDSKCLESVS--A  194 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~--~  194 (368)
                                                    ..+...+.+++++++++++++...+    +.|.+||..+++....+.  .
T Consensus        83 ------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  132 (333)
T 2dg1_A           83 ------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS  132 (333)
T ss_dssp             ------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred             ------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence                                          0145678999999999887777666    689999998776543332  2


Q ss_pred             CCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCc
Q 047325          195 HDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGL  266 (368)
Q Consensus       195 ~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~  266 (368)
                      +...+.++++.|++.++.++.       .+.|..+|.....       ...+......+..++|+|+++.|+ +...++.
T Consensus       133 ~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~  205 (333)
T 2dg1_A          133 TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-------VTPIIQNISVANGIALSTDEKVLWVTETTANR  205 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-------EEEeecCCCcccceEECCCCCEEEEEeCCCCe
Confidence            345789999999994444443       2456666654321       112222334578899999998654 4556789


Q ss_pred             EEEEeCCC-ccccce-------eeecc-ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc------Ce
Q 047325          267 VNFWEREK-QLSHGG-------VLKGH-KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG------PV  331 (368)
Q Consensus       267 i~i~d~~~-~~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------~v  331 (368)
                      |.+||+++ +.....       ...++ ...-++++++++++++...++.|.+||.+.   ..+..+..+..      .+
T Consensus       206 i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g---~~~~~~~~~~~~~g~~~~~  282 (333)
T 2dg1_A          206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG---YPIGQILIPGRDEGHMLRS  282 (333)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS---CEEEEEECTTGGGTCSCBC
T ss_pred             EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC---CEEEEEEcCCCccccccCc
Confidence            99999863 221110       01111 122256667788888877889999998743   33444443332      68


Q ss_pred             eEEEEecCCeeee
Q 047325          332 KCLAVEEDRDSSS  344 (368)
Q Consensus       332 ~~l~~~~~~~~~~  344 (368)
                      .+++|+|++..+.
T Consensus       283 ~~~~~~~dg~~L~  295 (333)
T 2dg1_A          283 THPQFIPGTNQLI  295 (333)
T ss_dssp             CEEEECTTSCEEE
T ss_pred             ceEEECCCCCEEE
Confidence            9999999975443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=9.8e-16  Score=125.28  Aligned_cols=232  Identities=12%  Similarity=0.169  Sum_probs=159.8

Q ss_pred             cCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcce-eccc------CCCCCeeEEEEe--CCEEEEEeC--CCeEEEE
Q 047325           41 VREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEF-CGFK------ASSGLVKAIVIS--GEKIFTGHQ--DGKIRVW  107 (368)
Q Consensus        41 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~-~~~~------~~~~~v~~~~~~--~~~l~s~~~--dg~i~vw  107 (368)
                      .+|-..+.++++++  +++++...++.|++||..... ..+.      .+...+..++++  +..|+.+..  ++.|.+|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            34556788999875  477777889999999976432 2222      344578899994  455555553  8899999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      |. +++.......                               .+...+.+++++++++++++...++.|.+||. .++
T Consensus       106 d~-~g~~~~~~~~-------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  152 (286)
T 1q7f_A          106 NQ-YGQFVRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN  152 (286)
T ss_dssp             CT-TSCEEEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred             CC-CCcEEEEecC-------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence            93 3332211110                               03356789999999988877777889999996 466


Q ss_pred             EEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEec
Q 047325          188 CLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       188 ~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .+..+.  .+...+..+++++++ .+++...++.|++||....       ....+..  +...+..++++++++++++..
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence            666664  344568999999999 6666677899999997532       2222322  235688999999999888888


Q ss_pred             CCC-cEEEEeCCCccccceeeeccc----eEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          263 SDG-LVNFWEREKQLSHGGVLKGHK----LAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       263 ~dg-~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .++ .|.+||.... .. ..+..+.    ..-++++++++++++ +.|+.|++|++..
T Consensus       226 ~~~~~i~~~~~~g~-~~-~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          226 HNNFNLTIFTQDGQ-LI-SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SSSCEEEEECTTSC-EE-EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCEEEEEECCCCC-EE-EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            776 9999996543 22 2222221    224677788887777 6799999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=1e-16  Score=135.91  Aligned_cols=244  Identities=9%  Similarity=0.072  Sum_probs=154.9

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEEcCC-cc-eecccCC--CCCeeEEEEe--CCE--EEEEe-------------
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-KE-FCGFKAS--SGLVKAIVIS--GEK--IFTGH-------------   99 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-~~-~~~~~~~--~~~v~~~~~~--~~~--l~s~~-------------   99 (368)
                      +...+..++++++  +|++++.+ .|.+|++. +. ......+  .+....++++  +++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3346777888755  78888887 99999975 32 2111111  1234456665  553  44553             


Q ss_pred             CCCeEEEEeecC-CCccccccCCccccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeC-CC
Q 047325          100 QDGKIRVWKISP-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASW-DR  176 (368)
Q Consensus       100 ~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~  176 (368)
                      .+|.+.+|++.. ++......                             .+ ..+...+.+++|+|++++++++.. ++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~-----------------------------~~~~~~~~~~~~~~~spdG~~l~~~~~~~~  167 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQ-----------------------------NYEYQENTGIHGMVFDPTETYLYSADLTAN  167 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEE-----------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCceEEEEccCCCCcCcceEe-----------------------------eEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence            689999999974 32111000                             00 014567899999999998887764 67


Q ss_pred             cEEEEEcc-CCeEE--EEee--cCCCceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcc--cccceeec----ccc
Q 047325          177 TFKVWRIS-DSKCL--ESVS--AHDDAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTK--HSLAQTLL----KQE  243 (368)
Q Consensus       177 ~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~--~~~~~~~~----~~~  243 (368)
                      .|.+||+. +++..  ..+.  .+...+..++|+|+| .+++++ .++.|.+|+++.......  ......+.    ++.
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            99999998 67643  3343  235678999999999 666655 478999998763211000  00111111    122


Q ss_pred             c------cEEEEE-EcCCCCEEEEecCCC------cEEEEeCC-Cccccce--eeecc--ceEEEEEEe---CCCEEEEe
Q 047325          244 C------AVTALV-VSSSRSIVYCGSSDG------LVNFWERE-KQLSHGG--VLKGH--KLAVLCLAA---AGKLVFSG  302 (368)
Q Consensus       244 ~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~--~~~~~--~~~~~~~~~---~~~~l~~~  302 (368)
                      .      .+..++ |+|++++|+++..+.      .|.+|++. ++.....  ....+  ...-++++|   ++++|+++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            2      588999 999999888766432      89999986 3332210  12112  223467899   89999988


Q ss_pred             eCC-CeEEEEecCCC
Q 047325          303 SAD-KTICVWRRDGA  316 (368)
Q Consensus       303 ~~d-g~i~iw~~~~~  316 (368)
                      +.+ +.|.+|+++..
T Consensus       328 ~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             EcCCCeEEEEEEchh
Confidence            864 89999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=6.4e-16  Score=126.41  Aligned_cols=223  Identities=10%  Similarity=0.147  Sum_probs=150.0

Q ss_pred             CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      ++-....+++++  ++.+++...++.|.+||.+. +..........                          ..++...+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~--------------------------~~~~~~~p   79 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK--------------------------RDSQLLYP   79 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS--------------------------STTCBSSE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCC--------------------------CcccccCc
Confidence            455668888887  66777778899999999763 22111110000                          00144567


Q ss_pred             eEEEEc-CCCCEEEEEeC-CCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          158 SCMSLD-QDCGLLYTASW-DRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       158 ~~~~~~-~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ..+++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ .+++...++.|.+||....      
T Consensus        80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------  152 (286)
T 1q7f_A           80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------  152 (286)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------
T ss_pred             eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------
Confidence            899994 66665555533 78999999 56777766643 34568999999999 6666677899999996532      


Q ss_pred             ccceeec--cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc----ceEEEEEEeCCCEEEEeeCCC-
Q 047325          234 SLAQTLL--KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH----KLAVLCLAAAGKLVFSGSADK-  306 (368)
Q Consensus       234 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg-  306 (368)
                       ....+.  .+...+..++++|+++++++...++.|++||......  ..+..+    ...-++++++++++++...++ 
T Consensus       153 -~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          153 -VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             -EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             -EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence             122221  3345689999999999888888899999999764322  122211    223366777898888888776 


Q ss_pred             eEEEEecCCCceeeeEeeeccc--cCeeEEEEecCCee
Q 047325          307 TICVWRRDGAIHTCLSVLTGHT--GPVKCLAVEEDRDS  342 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~  342 (368)
                      .|.+|+.+.   ..+..+..+.  ..+.+++++|+|.+
T Consensus       230 ~i~~~~~~g---~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          230 NLTIFTQDG---QLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EEEEECTTS---CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EEEEECCCC---CEEEEEcccCCCCcceeEEECCCCcE
Confidence            999998643   3444554443  34789999999984

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=4.5e-16  Score=129.86  Aligned_cols=255  Identities=10%  Similarity=0.071  Sum_probs=164.5

Q ss_pred             CCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCC-CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASS-GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      -+.+.+++++++  ++++.+.++.+.+++.... ..+..+. .++              .++.|.+||..+++.......
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~i~~~d~~~g~~~~~~~~   87 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPI--------------EEDTILVIDPNNAEILQSSGK   87 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTT-SCBSCGGGCSC--------------CSCCEEEECTTTCCEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcc-eeecccccccc--------------cCCcEEEEECCCCeEEeccCC
Confidence            588999999754  7777777776555443322 1121111 111              478899999877654221110


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-EEEEee------
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-CLESVS------  193 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~------  193 (368)
                                                     ++-.....++++|+++++++...++.|++||..... .+..+.      
T Consensus        88 -------------------------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g  136 (329)
T 3fvz_A           88 -------------------------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG  136 (329)
T ss_dssp             -------------------------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred             -------------------------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence                                           134567899999999988888888999999985442 444442      


Q ss_pred             ---cCCCceEEEEeCC-CC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeec----------cccccEEEEEEcCC-CC
Q 047325          194 ---AHDDAVNSVVSSS-EG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLL----------KQECAVTALVVSSS-RS  256 (368)
Q Consensus       194 ---~~~~~v~~~~~~~-~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~-~~  256 (368)
                         .+......++++| ++ .+++.+ .++.|++||....       ....+.          .+-.....++++|+ ++
T Consensus       137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~  209 (329)
T 3fvz_A          137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ  209 (329)
T ss_dssp             CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-------EEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred             CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence               3344688999999 67 555554 5899999995421       222221          12234889999998 77


Q ss_pred             EEEEecCCCcEEEEeCCCccccceee-eccc--eEEEEEEe------CCCEEEEeeCCCeEEEEecCCCceeeeEee---
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHGGVL-KGHK--LAVLCLAA------AGKLVFSGSADKTICVWRRDGAIHTCLSVL---  324 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~--~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---  324 (368)
                      ++++...++.|++||..+++...... ..+.  ....+++|      +++..++...+..|++|++.++  +.+..+   
T Consensus       210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~  287 (329)
T 3fvz_A          210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPV  287 (329)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECCS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCC
Confidence            88888889999999998554432221 1122  22244445      4454444555678999998776  555555   


Q ss_pred             eccccCeeEEEEecCCeeeecCCcceEEE
Q 047325          325 TGHTGPVKCLAVEEDRDSSSSTSSCAQRW  353 (368)
Q Consensus       325 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~w  353 (368)
                      .++...+.+|+++|+|.++++..+..+++
T Consensus       288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          288 RKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             SSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             CCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            35677799999999998655554443433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=4.9e-17  Score=139.41  Aligned_cols=295  Identities=10%  Similarity=-0.010  Sum_probs=172.0

Q ss_pred             CceeeeccCcCCc-----EEEEEecCC--EEEEccC-C--CcEEEEcCCcc-eecccCCCCCee-EEEEe--CCEEEEEe
Q 047325           34 NGLIGSLVREEGH-----IYSLAASKD--LLYTGSD-S--KNIRVWKNLKE-FCGFKASSGLVK-AIVIS--GEKIFTGH   99 (368)
Q Consensus        34 ~~~~~~~~~h~~~-----i~~~~~~~~--~l~s~~~-d--g~i~iw~~~~~-~~~~~~~~~~v~-~~~~~--~~~l~s~~   99 (368)
                      +..+..+..+...     +.+++|+++  +|+.... +  ..|.+||+... ...+..+..... .+.|+  +++|+.++
T Consensus        20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~   99 (396)
T 3c5m_A           20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK   99 (396)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred             CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE
Confidence            3344445444333     566677644  6555433 3  46888887643 233333333322 35666  88999999


Q ss_pred             CCCeEEEEeecCCCccccccCCcc--ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-----
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTL--PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-----  172 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----  172 (368)
                      .++.|.+||+.+++..........  +....+......  .       ....      ......++|+++.++..     
T Consensus       100 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~-------~~~~------~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A          100 NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT--K-------LVGI------EILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS--E-------EEEE------EEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC--c-------cccc------cccccccCCCCcceeeeeeccC
Confidence            999999999987764322211100  000000000000  0       0000      00113567888776654     


Q ss_pred             eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccc--
Q 047325          173 SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQ--  242 (368)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~--  242 (368)
                      ..+..|.+||+.+++..... .+...+..+.|+| ++ .|+..+.+      ..|.+||+....       ...+..+  
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~~~~  236 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VRKIKEHAE  236 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CEESSCCCT
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------eeEeeccCC
Confidence            35678999999988765544 4567789999999 66 55554433      468888876432       1122222  


Q ss_pred             cccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEee-------------
Q 047325          243 ECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGS-------------  303 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-------------  303 (368)
                      ...+..++|+|+++.|+.++.+     +.|++||+.++.... ........ ..+++ ++++++.++             
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeecccccc
Confidence            3457889999999987776543     449999998764331 11111122 77888 999888754             


Q ss_pred             ---CCCeEEEEecCCCceeeeEeeecccc-----------CeeEEEEecCCeeeecCC---cceEEEEEe
Q 047325          304 ---ADKTICVWRRDGAIHTCLSVLTGHTG-----------PVKCLAVEEDRDSSSSTS---SCAQRWIVY  356 (368)
Q Consensus       304 ---~dg~i~iw~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~---~~~~~w~l~  356 (368)
                         .++.|++||+.++...   .+..+..           .+..++|+|+|+.++..+   +...+|.+-
T Consensus       315 ~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence               3478999998776332   3334443           256789999998766443   334566553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3.6e-16  Score=143.26  Aligned_cols=239  Identities=11%  Similarity=0.038  Sum_probs=155.9

Q ss_pred             eeeccCcCCcEE---------EEEe----cCCE-EEEcc-CCCcEEEEcCC----cceecccC-----CCCCeeEEEEe-
Q 047325           37 IGSLVREEGHIY---------SLAA----SKDL-LYTGS-DSKNIRVWKNL----KEFCGFKA-----SSGLVKAIVIS-   91 (368)
Q Consensus        37 ~~~~~~h~~~i~---------~~~~----~~~~-l~s~~-~dg~i~iw~~~----~~~~~~~~-----~~~~v~~~~~~-   91 (368)
                      ...+..|...+.         .+.+    +++. |+.++ .+..|.++++.    .....+..     |...+.+++|+ 
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence            445556655544         4433    3556 66554 36778888876    45555555     66778889998 


Q ss_pred             -CCEEEEEeCC----------CeEEEEeecC------CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325           92 -GEKIFTGHQD----------GKIRVWKISP------KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS  154 (368)
Q Consensus        92 -~~~l~s~~~d----------g~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (368)
                       |+.|++++.|          ..|.+||+.+      ++......                                .+.
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--------------------------------~~~  187 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--------------------------------DAH  187 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--------------------------------SCS
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--------------------------------cCC
Confidence             7889988877          5899999887      32211110                                144


Q ss_pred             CCEeEEEEcCCCCEEEEEeCC--------CcEEEEEcc-CC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCC--eE
Q 047325          155 DAVSCMSLDQDCGLLYTASWD--------RTFKVWRIS-DS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADG--TV  219 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg--~i  219 (368)
                      ..+..++|+|||++|+.++.+        ..|.+||+. ++   +.......+...+..+.|+|+| +++++..++  .|
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            567788999999999888755        379999998 57   4555555567889999999999 777777788  56


Q ss_pred             EEEEcCCCCCCcccccceeecccccc--------EEEEEEcCCCCEEEEecCCCcEEEE--eCCCccccceeeeccceEE
Q 047325          220 KVWKREQHGKGTKHSLAQTLLKQECA--------VTALVVSSSRSIVYCGSSDGLVNFW--EREKQLSHGGVLKGHKLAV  289 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~  289 (368)
                      .+||+..+.      .......+...        +..++|+|++++++++.. +.+++|  |+.++..  ..+..+...+
T Consensus       268 ~~~~~~~~~------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~--~~l~~~~~~~  338 (662)
T 3azo_A          268 HRVDPATGA------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL--VDAAGPWTEW  338 (662)
T ss_dssp             EEECTTTCC------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE--EECCSSCCEE
T ss_pred             EEEECCCCc------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE--EEecCCCCeE
Confidence            666654331      11111111111        457889999999999998 999999  5554432  3455566666


Q ss_pred             EEE-EeCCCEE--EEeeCCCeEEEE--ecCCC
Q 047325          290 LCL-AAAGKLV--FSGSADKTICVW--RRDGA  316 (368)
Q Consensus       290 ~~~-~~~~~~l--~~~~~dg~i~iw--~~~~~  316 (368)
                      ..+ +++++.+  ++++.+....+|  |+.++
T Consensus       339 ~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          339 AATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            667 7776643  344555544555  54454

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=1e-15  Score=129.10  Aligned_cols=248  Identities=9%  Similarity=0.095  Sum_probs=158.1

Q ss_pred             CCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccce
Q 047325           62 DSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        62 ~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      .|+.|.+||..+.  ...+..+..+  .++++  +++++++.          .++.|.+||..+.+...........   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---  103 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence            4789999997643  3344444444  77887  77888886          3678999998876543322211000   


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEE-eecCCCceEEEEe
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLES-VSAHDDAVNSVVS  204 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  204 (368)
                                             ..+......++++|++++|+++..  ++.|.+||+.+++.+.. +....  ...+.+
T Consensus       104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~  158 (361)
T 2oiz_A          104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIP  158 (361)
T ss_dssp             -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEE
T ss_pred             -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEE
Confidence                                   002244567999999999998874  57999999999988877 54321  112333


Q ss_pred             CCCC--eEEEEcCCCeEEEEEcCCCCCCc--------------------------------------------cccccee
Q 047325          205 SSEG--LIFTGSADGTVKVWKREQHGKGT--------------------------------------------KHSLAQT  238 (368)
Q Consensus       205 ~~~~--~l~~~~~dg~i~i~d~~~~~~~~--------------------------------------------~~~~~~~  238 (368)
                      .|++  .+++.+.||.+.+++....+...                                            .......
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~  238 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP  238 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence            4443  44555555555555543211100                                            0000000


Q ss_pred             ec--c----c----cccEEEEEEcCCCCEEEEecC-----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325          239 LL--K----Q----ECAVTALVVSSSRSIVYCGSS-----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK  297 (368)
Q Consensus       239 ~~--~----~----~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (368)
                      +.  .    .    ......++++|+++.++++..           .+.|.+||+.+.+.......+. ..-+.++|+++
T Consensus       239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~  317 (361)
T 2oiz_A          239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRN  317 (361)
T ss_dssp             EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTT
T ss_pred             ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCC
Confidence            00  0    0    001112688999888777643           3489999999887665444444 55688899999


Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      +|++++. +.|.+||..+...+.+..+..+......++++|+|.
T Consensus       318 ~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          318 LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999887 999999988764467777767778889999999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=2.1e-16  Score=146.35  Aligned_cols=237  Identities=11%  Similarity=0.024  Sum_probs=151.3

Q ss_pred             CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      ....++.|.  +.+++++  ||.|++||+.+++...........                           .+......+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~   67 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---------------------------EFGHSINDY   67 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---------------------------TCCSCCCEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---------------------------hhcccccce
Confidence            345678887  5566665  999999999988743222111000                           011223458


Q ss_pred             EEcCCCCEEEEEeCC---------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          161 SLDQDCGLLYTASWD---------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      .|+||+++|+.++.+         +.+.+||+.+++.. .+..+...+...+|+||| .|+.+ .++.|++||+..+.. 
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~-  144 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-  144 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-
Confidence            999999999998876         56779999998865 456677889999999999 66666 578999999876532 


Q ss_pred             cccccceeeccccccE-----------------EEEEEcCCCCEEEEecCCC----------------------------
Q 047325          231 TKHSLAQTLLKQECAV-----------------TALVVSSSRSIVYCGSSDG----------------------------  265 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~dg----------------------------  265 (368)
                          ......++...+                 ..+.|+|||+.|+.++.|.                            
T Consensus       145 ----~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~  220 (740)
T 4a5s_A          145 ----YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK  220 (740)
T ss_dssp             ----EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred             ----EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence                011111222212                 3589999999999875321                            


Q ss_pred             --------cEEEEeCCC---ccc--cceeee-----ccceEE--EEEEeCCCEEEEee----CCCeEEEEecCCCc----
Q 047325          266 --------LVNFWEREK---QLS--HGGVLK-----GHKLAV--LCLAAAGKLVFSGS----ADKTICVWRRDGAI----  317 (368)
Q Consensus       266 --------~i~i~d~~~---~~~--~~~~~~-----~~~~~~--~~~~~~~~~l~~~~----~dg~i~iw~~~~~~----  317 (368)
                              .|++||+.+   +..  ......     +|...+  .+++||++.++...    .+..|.+||+.++.    
T Consensus       221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~  300 (740)
T 4a5s_A          221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN  300 (740)
T ss_dssp             TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence                    478888887   521  111111     244444  57889999666543    23479999998764    


Q ss_pred             eeeeEee--eccccCee-----EEEEecCCeeee-cC---CcceEEEEE
Q 047325          318 HTCLSVL--TGHTGPVK-----CLAVEEDRDSSS-ST---SSCAQRWIV  355 (368)
Q Consensus       318 ~~~~~~~--~~h~~~v~-----~l~~~~~~~~~~-~~---~~~~~~w~l  355 (368)
                      ...+..+  .+|...|.     ..+|+|||+.++ ..   ++...+|.+
T Consensus       301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            1112222  45665554     789999998655 32   344555543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.7e-16  Score=146.93  Aligned_cols=247  Identities=13%  Similarity=0.112  Sum_probs=156.9

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCC-----eeEEEEe--CCEEEEEeCC---------CeEE
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGL-----VKAIVIS--GEKIFTGHQD---------GKIR  105 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~-----v~~~~~~--~~~l~s~~~d---------g~i~  105 (368)
                      ...+++|.++  +++++  ||+|++||+.+.  ...+..|...     ...+.|+  |++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            3557888765  77775  999999998743  3334455432     2335666  8889988876         5667


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD  185 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  185 (368)
                      +||+.+++.....                                 .|...+...+|+|||+.|+.+. ++.|++||+.+
T Consensus        96 ~~d~~~~~~~~l~---------------------------------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~  141 (740)
T 4a5s_A           96 IYDLNKRQLITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN  141 (740)
T ss_dssp             EEETTTTEECCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             EEECCCCcEEEcc---------------------------------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence            9999987643211                                 1567789999999999998885 68999999988


Q ss_pred             CeEEEEe-ecCCCce-----------------EEEEeCCCC-eEEEEcCCC-----------------------------
Q 047325          186 SKCLESV-SAHDDAV-----------------NSVVSSSEG-LIFTGSADG-----------------------------  217 (368)
Q Consensus       186 ~~~~~~~-~~~~~~v-----------------~~~~~~~~~-~l~~~~~dg-----------------------------  217 (368)
                      ++..+.. .++...+                 ..+.|+||| .|+.++.|.                             
T Consensus       142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence            7754422 2222222                 358999999 677664221                             


Q ss_pred             -------eEEEEEcCC---CCCCcccccceeec------cccccEEEEEEcCCCCEEEEec----CCCcEEEEeCCCcc-
Q 047325          218 -------TVKVWKREQ---HGKGTKHSLAQTLL------KQECAVTALVVSSSRSIVYCGS----SDGLVNFWEREKQL-  276 (368)
Q Consensus       218 -------~i~i~d~~~---~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-  276 (368)
                             .|++||+..   +...    ....+.      ++...+..++|+||++.++...    .+..|.+||+.++. 
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNA----TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCC----CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             cCcCCeeEEEEEECCCCCCCCcc----eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence                   477788775   3110    011111      3677799999999999666543    23479999998765 


Q ss_pred             ---c--ccee-eeccce-------EEEEEEeCCCEEE-Eee-CCC--eEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325          277 ---S--HGGV-LKGHKL-------AVLCLAAAGKLVF-SGS-ADK--TICVWRRDGAIHTCLSVLTGHTGPVKCLA  335 (368)
Q Consensus       277 ---~--~~~~-~~~~~~-------~~~~~~~~~~~l~-~~~-~dg--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~  335 (368)
                         +  .... ...|..       .-..++|||+.|+ ..+ .+|  .|++|+++++.  .. .+......|..+.
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--~~-~lT~g~~~v~~~~  370 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--CT-FITKGTWEVIGIE  370 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS--CE-ESCCSSSCEEEEE
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc--eE-ecccCCEEEEEEE
Confidence               1  1111 123332       1346889999776 555 344  47777776652  22 3333344555544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=4.5e-16  Score=133.12  Aligned_cols=231  Identities=9%  Similarity=0.001  Sum_probs=149.1

Q ss_pred             eecccCCCCCeeE-----EEEe--CCEEEEEeC-CCe--EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecc
Q 047325           75 FCGFKASSGLVKA-----IVIS--GEKIFTGHQ-DGK--IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR  144 (368)
Q Consensus        75 ~~~~~~~~~~v~~-----~~~~--~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (368)
                      ...+..|......     .+|+  |++|+.++. +|.  |.+||+.+++......                         
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-------------------------   77 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-------------------------   77 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-------------------------
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-------------------------
Confidence            3445555544444     5566  888888887 674  7778887765432221                         


Q ss_pred             cceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE--eCCCC-eEEE---------
Q 047325          145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV--SSSEG-LIFT---------  212 (368)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~---------  212 (368)
                             ++...+....|+|+++.|+.++.++.|++||+.+++....+..+...+....  +++++ .++.         
T Consensus        78 -------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           78 -------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             -------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             -------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence                   1333444578999999999999999999999999988777766666554443  48888 4442         


Q ss_pred             -------------EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC------CcEEEEeC
Q 047325          213 -------------GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD------GLVNFWER  272 (368)
Q Consensus       213 -------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~  272 (368)
                                   ...+..|.+||+..+.       ...+..+...+..+.|+| +++.|+....+      ..|.++|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                         2245789999998652       233444556789999999 99988876653      37888887


Q ss_pred             CCccccceeeeccc---eEEEEEEeCCCEEEEeeC-CC----eEEEEecCCCceeeeEeeeccccC---eeEEEEecCCe
Q 047325          273 EKQLSHGGVLKGHK---LAVLCLAAAGKLVFSGSA-DK----TICVWRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRD  341 (368)
Q Consensus       273 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~  341 (368)
                      ...... .....+.   .....++|||+.|+..+. ++    .|++||+.++....+..+.++...   ...++|+|||+
T Consensus       224 ~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          224 DGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             TSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             CCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence            654332 1222221   223568889987755433 22    499999988755555555442111   22247999998


Q ss_pred             eeec
Q 047325          342 SSSS  345 (368)
Q Consensus       342 ~~~~  345 (368)
                      .++.
T Consensus       303 ~l~~  306 (388)
T 3pe7_A          303 DAPV  306 (388)
T ss_dssp             CC--
T ss_pred             ccee
Confidence            7774

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=3.5e-13  Score=110.69  Aligned_cols=263  Identities=11%  Similarity=0.043  Sum_probs=170.5

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceeccc--CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFK--ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      +..+...+.+++++++  ++++...++.|.+||.......+.  .+...+.+++++  +..+++...++.|..|+.. ++
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            4445567899998755  555555578999999874443332  345678899987  5556655568889999875 22


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE-e
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES-V  192 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~  192 (368)
                      . .....                              ......+.++++.+++.++++...++.|..||. +++.... .
T Consensus        89 ~-~~~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~  136 (299)
T 2z2n_A           89 I-KEYTL------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL  136 (299)
T ss_dssp             E-EEEEC------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             E-EEEeC------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC
Confidence            1 00000                              003356788999999988777777889999998 5554332 2


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ......+..+++.+++ .+++...++.|..||. .+..     ...........+..+++++++++.++...++.|..||
T Consensus       137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-----TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-----EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            3344568999999998 5555556789999998 3311     0111223345688999999999877777788999999


Q ss_pred             CCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      . ++.........+...+  ++++++++++++...++.|..||.+ +. .....+..+...+.++++ +++.+.++
T Consensus       211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~  282 (299)
T 2z2n_A          211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFA  282 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred             C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence            8 4433221122222333  4455677766666678899999874 31 122223345567999999 88885443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.3e-14  Score=121.10  Aligned_cols=224  Identities=9%  Similarity=0.039  Sum_probs=147.1

Q ss_pred             CCCcEEEEcCCcc-ee-cc-cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC-ccccccCCccccceeeeeccCC
Q 047325           62 DSKNIRVWKNLKE-FC-GF-KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIK  135 (368)
Q Consensus        62 ~dg~i~iw~~~~~-~~-~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  135 (368)
                      .+++|.+||..+. +. .+ ..+-.....++++  ++.+++...++.|++|+.+... ...........           
T Consensus        67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----------  135 (329)
T 3fvz_A           67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----------  135 (329)
T ss_dssp             CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred             cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence            3568999997632 22 22 2344578889998  6777777888999999976542 11111000000           


Q ss_pred             CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEe-CCCcEEEEEccCCeEEEEeecCC----------CceEEEE
Q 047325          136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTAS-WDRTFKVWRISDSKCLESVSAHD----------DAVNSVV  203 (368)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~  203 (368)
                                  ..-.++......++++| ++.++++.+ .++.|++|| .+++.+..+....          .....++
T Consensus       136 ------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia  202 (329)
T 3fvz_A          136 ------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA  202 (329)
T ss_dssp             ------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred             ------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence                        00001445688999999 787777776 689999999 5677777664322          2378999


Q ss_pred             eCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC------CCCEEEEecCCCcEEEEeCC
Q 047325          204 SSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS------SRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       204 ~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ++|+ + ++++...++.|++||..++.      ....+  ..+...+..++++|      +++..++...+..|++||..
T Consensus       203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          203 LVPHLDQLCVADRENGRIQCFKTDTKE------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCC------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCc------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence            9998 6 66777788999999997442      22333  23456788899999      33333333445689999988


Q ss_pred             Cccccceee--eccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          274 KQLSHGGVL--KGHK--LAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       274 ~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ++.......  ..+.  ..-++++++|.++++...++.|++|+++.
T Consensus       277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          277 SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            776553321  1222  23366778898888888899999998754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=5.6e-15  Score=123.04  Aligned_cols=241  Identities=9%  Similarity=0.025  Sum_probs=157.6

Q ss_pred             cCCCcEEEEcCCcceec--c------cCCCCCeeEEEEeCCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           61 SDSKNIRVWKNLKEFCG--F------KASSGLVKAIVISGEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        61 ~~dg~i~iw~~~~~~~~--~------~~~~~~v~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      +.+++|.++|..+....  +      .........+.+.++.++.+ ..++.|.+||..+++......            
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------   81 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT------------   81 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence            34889999998743221  1      11224467788886655554 457999999998876433221            


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCC-----CceEEEEeC
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHD-----DAVNSVVSS  205 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~  205 (368)
                                           .......++++++++ ++++. .++.|.+||+.+++....+....     .....+++ 
T Consensus        82 ---------------------~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           82 ---------------------GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             ---------------------CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred             ---------------------CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence                                 235577899988884 55554 78999999999999887776433     14456666 


Q ss_pred             CCCeEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----------CcEEEEeCC
Q 047325          206 SEGLIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----------GLVNFWERE  273 (368)
Q Consensus       206 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~  273 (368)
                      .++.++++.  .++.|.++|+.+..      ....+.. ......++++|++++++++..+          +.|.++|.+
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDK------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTE------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCe------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            455555554  48899999998652      2222222 2234678899999877776654          789999998


Q ss_pred             Cccccceeee--ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325          274 KQLSHGGVLK--GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE-DRDSSSS  345 (368)
Q Consensus       274 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~  345 (368)
                      +.+.......  +....-++++++++.|+++..  .|.+||..+........+.........++++| ++.+.++
T Consensus       212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            7654432222  223455778888998888765  89999987653211111222245789999999 4554343

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=1e-14  Score=119.89  Aligned_cols=222  Identities=14%  Similarity=0.105  Sum_probs=148.8

Q ss_pred             cccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           77 GFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        77 ~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      .+..+.....+++|+  ++ .++++..++.|..|+..++ . ..                                +..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~--------------------------------~~~~   67 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP--------------------------------EMHP   67 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE--------------------------------EESS
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE--------------------------------EECC
Confidence            344455667788888  66 6788888999999998765 1 11                                1114


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCC-eEEE----Ec----------
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEG-LIFT----GS----------  214 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~~----~~----------  214 (368)
                      ...+.+++++++++++++...++.|.+||..+++........    ...+..+++.|+| ++++    |+          
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~  147 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE  147 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence            567889999999998777766789999999888765443221    2346789999999 4554    32          


Q ss_pred             ---CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-Cccc-c-ceeeeccce-
Q 047325          215 ---ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-KQLS-H-GGVLKGHKL-  287 (368)
Q Consensus       215 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~-~~~~~~~~~-  287 (368)
                         ..+.|..++.. + .      ......+......++|+|+++.+++.+.++.|.+|++. .+.. . ...+..+.. 
T Consensus       148 ~~~~~~~l~~~~~~-g-~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          148 MELPGRWVFRLAPD-G-T------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             CCSSSCEEEEECTT-S-C------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             ccCCCcEEEEECCC-C-C------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence               13456666554 1 1      22333445567899999999988888888999999986 3322 0 111111111 


Q ss_pred             -EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE-ecCCeeeecC
Q 047325          288 -AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV-EEDRDSSSST  346 (368)
Q Consensus       288 -~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~~~~  346 (368)
                       .-++++++|+++++.  ++.|.+|+.+.   +.+..+..+.. +++++| .|++..|..+
T Consensus       220 p~~i~~d~~G~l~v~~--~~~v~~~~~~g---~~~~~~~~~~~-~~~~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA--GDGVHVLTPDG---DELGRVLTPQT-TSNLCFGGPEGRTLYMT  274 (296)
T ss_dssp             CCSEEEBTTSCEEEEE--TTEEEEECTTS---CEEEEEECSSC-CCEEEEESTTSCEEEEE
T ss_pred             CCeEEECCCCCEEEEc--CCeEEEECCCC---CEEEEEECCCC-ceeEEEECCCCCEEEEE
Confidence             125677788866665  88999998763   45666666666 999999 5888754433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=8.3e-15  Score=123.25  Aligned_cols=249  Identities=10%  Similarity=0.084  Sum_probs=154.2

Q ss_pred             EEEEEecCCEEEEc---------cCCCcEEEEcCCcce-ecccCCCCCeeEEEEe--CCEEEEEeCC---Ce--EEEEee
Q 047325           47 IYSLAASKDLLYTG---------SDSKNIRVWKNLKEF-CGFKASSGLVKAIVIS--GEKIFTGHQD---GK--IRVWKI  109 (368)
Q Consensus        47 i~~~~~~~~~l~s~---------~~dg~i~iw~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~--i~vw~~  109 (368)
                      +..++++|+.++..         ..++.|.+||+.... ..+    ..+..+.|+  |++|+.++.+   +.  |.+|++
T Consensus        17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~   92 (347)
T 2gop_A           17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADL   92 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEET
T ss_pred             cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEEC
Confidence            44445567655443         236789999987532 223    457788888  7788877654   34  666677


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC--------------
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD--------------  175 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------  175 (368)
                      .+++...                                 +..+.. +..+.|+|+++.|+.++.+              
T Consensus        93 ~~g~~~~---------------------------------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           93 ETLSSKK---------------------------------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             TTTEEEE---------------------------------EEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCceEE---------------------------------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            6543211                                 111233 8899999999988887642              


Q ss_pred             -------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCC------C-eEEEEEcCCCCCCccccc
Q 047325          176 -------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSAD------G-TVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       176 -------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g-~i~i~d~~~~~~~~~~~~  235 (368)
                                   ..|.+||+.+++.+..+.. . .+..+.|+|++.++++..+      . ...+|.++ .+.      
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~------  209 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK------  209 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE------
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc------
Confidence                         5799999998887455554 3 7889999999944455433      2 34455444 211      


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCC--------CcEEEEeCCCccccceeeeccceEE---EEEEeCCCEEEEeeC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSD--------GLVNFWEREKQLSHGGVLKGHKLAV---LCLAAAGKLVFSGSA  304 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~  304 (368)
                      ...+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  ++.. ......+...+   ..++ ++ ++++++.
T Consensus       210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~  281 (347)
T 2gop_A          210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFE  281 (347)
T ss_dssp             EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred             eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEec
Confidence            1222223 445444  8999988877644        4688888  3322 22333444444   3455 66 8899999


Q ss_pred             CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC-Ccc-eEEEEE
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSC-AQRWIV  355 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~-~~~w~l  355 (368)
                      ++.+++| ++.+  .. ..+..+...|.+++|+| ...++.. ... ..+|.+
T Consensus       282 ~~~~~l~-~~~g--~~-~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          282 EGSVNLY-IWDG--EI-KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             TTEEEEE-EESS--SE-EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEE
T ss_pred             CCcEEEE-EcCC--ce-EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEe
Confidence            9999999 8743  33 33344577899999999 4433322 222 366665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=8e-15  Score=118.59  Aligned_cols=216  Identities=8%  Similarity=-0.003  Sum_probs=151.5

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLY  170 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~  170 (368)
                      ++.|++++.|+.|.+||.++++.......                                +. ..+.++.+.|+|++++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------------~~~~~~~~~~~~pdG~ilv   52 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------------EKGWECNSVAATKAGEILF   52 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------------CTTCCCCEEEECTTSCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------------CccCCCcCeEECCCCCEEE
Confidence            56888999999999999988876544332                                22 3578899999999888


Q ss_pred             EEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          171 TASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                        +.++.|..||. +++.+..+..+. ..+.++.+.++| .+++.+. ++.+..+|.. ++.............+.....
T Consensus        53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCS
T ss_pred             --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccccccc
Confidence              35678999999 899999888653 578889999999 6666665 6777777753 211111111001112223445


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      .++..++++++++...++.|..||.+ ++.................++++++++++.++.|..+|.+++  +.+.++..+
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG--~~~w~~~~~  205 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN--RIVRRVNAN  205 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC--CEEEEEEGG
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC--cEEEEecCC
Confidence            56788999999999999999999988 665543332222222445568999999998999999987765  666666543


Q ss_pred             c------cCeeEEEEecCCeeeecC
Q 047325          328 T------GPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       328 ~------~~v~~l~~~~~~~~~~~~  346 (368)
                      .      ..+..++..++|.++++.
T Consensus       206 ~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCccccccccceEcCCCCEEEEe
Confidence            2      227888889999876655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=6.4e-13  Score=111.04  Aligned_cols=239  Identities=11%  Similarity=0.031  Sum_probs=152.6

Q ss_pred             CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecc-cCCCCCeeEEEEe--CCEEEEEeCC----C
Q 047325           33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGF-KASSGLVKAIVIS--GEKIFTGHQD----G  102 (368)
Q Consensus        33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~-~~~~~~v~~~~~~--~~~l~s~~~d----g  102 (368)
                      ..+....+..+...+.+++|+++  +++++..++.|.+||.... ...+ ..+...+.+++++  ++.+++...+    +
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            34455667777778899999754  6778888999999998643 2222 2466789999997  5556665555    6


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CC
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DR  176 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~  176 (368)
                      .|.+||.+++.........                              .+...+.+++++|+++++++...      .+
T Consensus       113 ~i~~~d~~~~~~~~~~~~~------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDL------------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             EEEEECTTSCSCEEEECSS------------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eEEEEeCCCCEEEEEEccC------------------------------ccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            8999998766532111000                              03356889999999987776653      35


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcc-c--ccceeeccccccEEEEEE
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTK-H--SLAQTLLKQECAVTALVV  251 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~  251 (368)
                      .|..+|..+++..... .....+..++++|++ .+ ++...++.|.+||++....... .  ........+ ..+..+++
T Consensus       163 ~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~  240 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI  240 (333)
T ss_dssp             EEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred             eEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence            6777776655543322 233457889999998 45 4555688999999964221000 0  000111111 46788999


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccccceeeecc--------ceEEEEEEeCCCEEEEeeCC
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--------KLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d  305 (368)
                      ++++++.++...++.|.+||.+. ... ..+..+        ...-.+++++++.|+.++.+
T Consensus       241 d~~G~l~v~~~~~~~v~~~d~~g-~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          241 DSDDNLYVAMYGQGRVLVFNKRG-YPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTS-CEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEcCCCEEEEECCCC-CEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            99999888877788999999853 322 222222        12335566787777666555

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=2.5e-14  Score=115.81  Aligned_cols=179  Identities=8%  Similarity=0.008  Sum_probs=118.5

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ..+.+++++++++++++.. ++.|.+||................+..+++.+++ .+++...++.|.+|+......    
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----
Confidence            4567899999988665555 8899999987654332222233568899999998 555556788999997543211    


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                        ..........+..++++++++++++...++.|.+||............. ....-+++++++.++++...++.|.+|+
T Consensus       142 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          142 --TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             --EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             --EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence              1111122235678999999998887777889999998765433211111 2223355666787777777788999998


Q ss_pred             cCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      .+...  .......+...+.+++++++|.+
T Consensus       220 ~~~~~--~~~~~~~~~~~p~~i~~~~~g~l  247 (270)
T 1rwi_B          220 AGSTT--STVLPFTGLNTPLAVAVDSDRTV  247 (270)
T ss_dssp             TTCSC--CEECCCCSCSCEEEEEECTTCCE
T ss_pred             CCCCc--ceeeccCCCCCceeEEECCCCCE
Confidence            86542  22222233457899999999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=2.9e-14  Score=117.15  Aligned_cols=247  Identities=10%  Similarity=0.067  Sum_probs=160.7

Q ss_pred             CCCceeeeccCcCCcEEEEEecC--C-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASK--D-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV  106 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v  106 (368)
                      ..+..+..+..+.....+++|++  + +++++..++.|..||.......+..+...+.+++++  ++.+++...++.|.+
T Consensus        15 ~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           15 PAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             CCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            34444555666667788888874  4 788888999999999886666677777889999997  666666656789999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE----e---------
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA----S---------  173 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~---------  173 (368)
                      ||..+++.........                            ......+..++++|+|+++++.    +         
T Consensus        95 ~d~~~g~~~~~~~~~~----------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           95 QREPGGEWESIADSFE----------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             ECSTTCCEEEEECEET----------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             EcCCCCcEEEEeeccC----------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence            9987665321110000                            0022456789999999988873    2         


Q ss_pred             ----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          174 ----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       174 ----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                          ..+.|..+|.. ++. ..+..+......++|+|++ .+++.+.++.|.+||+...+....  ....+..+...+..
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~--~~~~~~~~~~~p~~  222 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY--QGVHFTVEPGKTDG  222 (296)
T ss_dssp             CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE--EEEEECCSSSCCCS
T ss_pred             cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC--CCeEeeCCCCCCCe
Confidence                13456666655 443 3444566677899999999 667778889999999973221100  01111224455678


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce-EEEEEE-eCCCEEEEeeCCCeEEEEecCC
Q 047325          249 LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL-AVLCLA-AAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       249 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      ++++++|++.++.  ++.|.+||.+. +.. ..+..+.. ...++. ++++.|++++.++ +..++..+
T Consensus       223 i~~d~~G~l~v~~--~~~v~~~~~~g-~~~-~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          223 LRVDAGGLIWASA--GDGVHVLTPDG-DEL-GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             EEEBTTSCEEEEE--TTEEEEECTTS-CEE-EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             EEECCCCCEEEEc--CCeEEEECCCC-CEE-EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            9999999876666  78899999873 333 23333332 234553 6788888888764 43444433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=1.2e-13  Score=111.73  Aligned_cols=231  Identities=6%  Similarity=-0.003  Sum_probs=152.7

Q ss_pred             cEEEEEecCC--EEE-EccCCCcEEEEcCCcceecc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325           46 HIYSLAASKD--LLY-TGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        46 ~i~~~~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~  118 (368)
                      ...+++++++  +++ +.+.++.|.+||........  ..+...+.+++++  ++ |+.+..++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeee
Confidence            6678888644  555 55778999999976433222  2333567788887  45 444444889999997654321110


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA  198 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  198 (368)
                       .                               .....+.+++++++++++++...++.|.+||..+.............
T Consensus       104 -~-------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~  151 (270)
T 1rwi_B          104 -F-------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND  151 (270)
T ss_dssp             -C-------------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCS
T ss_pred             -c-------------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCC
Confidence             0                               02246789999999987777777889999987655443322233346


Q ss_pred             eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      +.++++.+++ .+++...++.|.+||......      ..........+..++++++++++++...++.|.+||......
T Consensus       152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCCEEECTTCCEEEEEGGGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             ceeEEEeCCCCEEEEECCCCEEEEEecCCCce------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            7889999988 555556678999999875421      111122225688999999998888887888999999876433


Q ss_pred             cceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          278 HGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       278 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      .. ....+  ...-++++++++++++...++.|+++++...
T Consensus       226 ~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          226 TV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            22 11122  2233566678888888889999999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=1.2e-13  Score=122.53  Aligned_cols=252  Identities=9%  Similarity=0.018  Sum_probs=171.6

Q ss_pred             CEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec--CCCccccccCCcccccee
Q 047325           55 DLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS--PKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~  128 (368)
                      .++++...+++|.++|..+.  +..+.. ...+..+.++  ++++++++.|+.|.+||+.  +.+......         
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---------  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---------  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---------
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---------
Confidence            37788888999999998753  333332 2345678887  8899999999999999985  443221111         


Q ss_pred             eeeccCCCCceeEecccceeeeeecCCCEeEEEEc----CCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC--------
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD----QDCGLLYTASW-DRTFKVWRISDSKCLESVSAH--------  195 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~--------  195 (368)
                                              .......++|+    |+|++++++.. ++.|.++|..+.+++..+...        
T Consensus       238 ------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          238 ------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             ------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred             ------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence                                    12235689999    69998887765 589999999999988876532        


Q ss_pred             ---CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEE
Q 047325          196 ---DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNF  269 (368)
Q Consensus       196 ---~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  269 (368)
                         ...+..+..++++  .++....+|.|.++|......    ..... .........+.|+|++++++++. .++.|.+
T Consensus       294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V  368 (567)
T 1qks_A          294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVV  368 (567)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeee-eeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence               2257788888876  666667789999999875421    11111 22334567889999999876654 6789999


Q ss_pred             EeCCCccccceeee----ccceEE-EEEEeCCC-EEEEee-CCCeEEEEecCCCc-----eeeeEeeeccccCeeEEEEe
Q 047325          270 WEREKQLSHGGVLK----GHKLAV-LCLAAAGK-LVFSGS-ADKTICVWRRDGAI-----HTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       270 ~d~~~~~~~~~~~~----~~~~~~-~~~~~~~~-~l~~~~-~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~l~~~  337 (368)
                      +|+.+++.......    .|...- .-+.|++. ..+++. .++.|.++|.+...     .+.++++......-..+..+
T Consensus       369 iD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~  448 (567)
T 1qks_A          369 IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH  448 (567)
T ss_dssp             EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             EECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC
Confidence            99998765433322    343222 22567644 444443 57899999987632     35667776554444557889


Q ss_pred             cCCeeeec
Q 047325          338 EDRDSSSS  345 (368)
Q Consensus       338 ~~~~~~~~  345 (368)
                      |+++.+..
T Consensus       449 p~~~~l~v  456 (567)
T 1qks_A          449 PNSQYLYV  456 (567)
T ss_dssp             TTCSEEEE
T ss_pred             CCCCeEEE
Confidence            99986554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.8e-11  Score=100.41  Aligned_cols=260  Identities=10%  Similarity=0.074  Sum_probs=167.3

Q ss_pred             cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325           43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      ....+.+++++++  +.++...++.|.+||.......+  ..+...+.+++++  +..+++...++.|..+|.. ++...
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4567788888744  66666678899999977433332  2334678888887  5555555557889999876 43211


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-EeecC
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVSAH  195 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~  195 (368)
                       ...                              ......+.++++.++++++++...++.|..+|.. ++... .+...
T Consensus        97 -~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           97 -YPL------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             -EEC------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             -ecC------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence             000                              0023567889999999877777667899999987 65442 23334


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      ...+.++++.+++ .+++...++.|..+|.. ...     ...........+..+++++++++.++....+.|.+||.. 
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-  217 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL-----EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-  217 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE-----EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-
Confidence            5678899999988 55555557899999983 211     111122334568899999999887777777889999983 


Q ss_pred             ccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          275 QLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       275 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      +.........+....  +++++++++.++...++.|..|+....  .....+......+.+++++++|.+.+
T Consensus       218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNT--IQEYQLQTENAEPHGITFGKDGSVWF  287 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSC--EEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred             CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCc--EEEEECCccCCccceeEeCCCCCEEE
Confidence            322211122222223  455567887776666789999987432  12222333456689999999998433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=1.3e-13  Score=116.00  Aligned_cols=180  Identities=8%  Similarity=0.107  Sum_probs=117.0

Q ss_pred             CEeEEEEcCCCCEEEEEeCC---C--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC--------------
Q 047325          156 AVSCMSLDQDCGLLYTASWD---R--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA--------------  215 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~--------------  215 (368)
                      .+..+.|+|||++|+.++.+   +  .|.+||+.+++.......+ . +..+.|+|++ .|+.++.              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            46789999999999887754   2  4888899888776655543 3 8999999999 6666653              


Q ss_pred             -------------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-------cEEEEeCCCc
Q 047325          216 -------------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-------LVNFWEREKQ  275 (368)
Q Consensus       216 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~  275 (368)
                                   ...|.+||+..+.      ....+.. . .+..+.|+|++ +++++..++       ...+|.+.++
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~  208 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG  208 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred             ceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence                         2578899987541      1122222 2 67789999999 777775542       3344443333


Q ss_pred             cccceeeeccceEEEEEEeCCCEEEEeeCC--------CeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCeeeecC
Q 047325          276 LSHGGVLKGHKLAVLCLAAAGKLVFSGSAD--------KTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSSST  346 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~  346 (368)
                      ..  ..+..+ ..+..++|+|++|+.++.+        ..|.+||  ++  ........|...+.. +.|+ ++ +++++
T Consensus       209 ~~--~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          209 KE--EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             EE--EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             ce--EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC--ceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence            22  122223 4455569999988877654        3677776  33  333344556677886 9999 88 55544


Q ss_pred             --CcceEEEEEe
Q 047325          347 --SSCAQRWIVY  356 (368)
Q Consensus       347 --~~~~~~w~l~  356 (368)
                        ++..++| +-
T Consensus       280 ~~~~~~~l~-~~  290 (347)
T 2gop_A          280 FEEGSVNLY-IW  290 (347)
T ss_dssp             EETTEEEEE-EE
T ss_pred             ecCCcEEEE-Ec
Confidence              3456777 54

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=1.2e-13  Score=116.52  Aligned_cols=190  Identities=10%  Similarity=0.081  Sum_probs=117.4

Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEEccCCeEEEEeecC------CCceEEEEeCCCC-eEEEEcC--CCeE
Q 047325          159 CMSLDQDCGLLYTASW----------DRTFKVWRISDSKCLESVSAH------DDAVNSVVSSSEG-LIFTGSA--DGTV  219 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~l~~~~~--dg~i  219 (368)
                      .++++|++++++++..          ++.|.+||+.+++.+..+...      ......++++|+| +|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            7999999999999863          567999999999988887643      2346788999999 7776653  6899


Q ss_pred             EEEEcCCCCCCccccccee-ecccc--------------------ccEEEEEE---------------------------
Q 047325          220 KVWKREQHGKGTKHSLAQT-LLKQE--------------------CAVTALVV---------------------------  251 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~-~~~~~--------------------~~i~~~~~---------------------------  251 (368)
                      .+||+.....      ... +....                    +.+..+.+                           
T Consensus       134 ~v~d~~~~~~------~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  207 (361)
T 2oiz_A          134 GIVDVAKGDY------VEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP  207 (361)
T ss_dssp             EEEETTTTEE------EEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC
T ss_pred             EEEECCCCcE------EEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe
Confidence            9999986522      111 11000                    01111111                           


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccccc-eee------------eccceEEEEEEeCCCEEEEeeC-----------CCe
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLSHG-GVL------------KGHKLAVLCLAAAGKLVFSGSA-----------DKT  307 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~l~~~~~-----------dg~  307 (368)
                      ++++..++..+.++.+.++|+....... ...            .......++++++++.++++..           ++.
T Consensus       208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~  287 (361)
T 2oiz_A          208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE  287 (361)
T ss_dssp             EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred             cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence            1122233333344556666654321110 000            0011112578888887776543           347


Q ss_pred             EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC-cceEEEEEeeC
Q 047325          308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS-SCAQRWIVYSG  358 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l~sg  358 (368)
                      |.+||+.+.  +.+.++..+.  +.+++|+|||+.+.+++ +.+.+|...++
T Consensus       288 v~viD~~t~--~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~  335 (361)
T 2oiz_A          288 IWVMDTKTK--QRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP  335 (361)
T ss_dssp             EEEEETTTT--EEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred             EEEEECCCC--cEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence            999998876  6778887776  99999999999665444 34555554443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=2.6e-12  Score=106.96  Aligned_cols=250  Identities=9%  Similarity=-0.013  Sum_probs=160.0

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEe-CCCeEEEEeecCCCcccccc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGH-QDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~-~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .....+.++++ +.++...++.|.+||..+.  +..+. .......++++ +..++.+. .++.|.+||..+++......
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            34677888777 5555566799999998743  33343 34567888884 55777666 89999999998776433222


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCC
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                      .....                           +.......+++  ++..++++.  .++.|.++|+.+++.+..+... .
T Consensus       123 ~g~~~---------------------------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~  172 (328)
T 3dsm_A          123 CPDMD---------------------------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I  172 (328)
T ss_dssp             CTTCC---------------------------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred             cCCcc---------------------------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence            11000                           01113445666  344555555  4889999999999988887653 3


Q ss_pred             ceEEEEeCCCCeE-EEEcCC----------CeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCCC
Q 047325          198 AVNSVVSSSEGLI-FTGSAD----------GTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDG  265 (368)
Q Consensus       198 ~v~~~~~~~~~~l-~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  265 (368)
                      ....+++.+++.+ +++..+          +.|.++|..+..      ....+.. .......++++|+++.|+++..  
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--  244 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--  244 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred             CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence            4568889999944 444333          789999987542      2222221 1235789999999999888765  


Q ss_pred             cEEEEeCCCcccccee-ee--ccceEEEEEEe-CCCEEEEe----eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          266 LVNFWEREKQLSHGGV-LK--GHKLAVLCLAA-AGKLVFSG----SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      .|.+||..+++..... ..  +....-++++| ++.++++.    ..++.|.+||.+ +  +.+.++.. ......++|-
T Consensus       245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g--~~~~~i~~-G~~P~~~~~~  320 (328)
T 3dsm_A          245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G--KLIDEFYV-GIIPGAFCWK  320 (328)
T ss_dssp             SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C--CEEEEEEE-EESEEEEEEE
T ss_pred             EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C--CEEEEEEe-ccCcceEEEe
Confidence            8999999876543211 22  12333467777 45566665    578999999887 3  45555542 3334555553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=1.4e-14  Score=124.16  Aligned_cols=215  Identities=5%  Similarity=-0.084  Sum_probs=137.3

Q ss_pred             eeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC-Ee
Q 047325           85 VKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA-VS  158 (368)
Q Consensus        85 v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~  158 (368)
                      +..++|+  |++|+.....   ..|.+||+.+++......                                 +... ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---------------------------------~~~~~~~   84 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---------------------------------GKGDNTF   84 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---------------------------------SSCBCTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---------------------------------CCCCccc
Confidence            5566676  7787766543   368888887665322111                                 1122 22


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE-------------------EEeCCCC-eEEEE-----
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS-------------------VVSSSEG-LIFTG-----  213 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~-~l~~~-----  213 (368)
                      .+.|+|+++.|+.++.++.|.+||+.+++.......+......                   +.++|++ .++..     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3689999999999999999999999988776655544443222                   3467777 33332     


Q ss_pred             cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC------CcEEEEeCCCccccceeeecc-
Q 047325          214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD------GLVNFWEREKQLSHGGVLKGH-  285 (368)
Q Consensus       214 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-  285 (368)
                      ..+..|.+||+..+.       ...+..+...+..+.|+| +++.|+..+.+      ..|.+||+...... ...... 
T Consensus       165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (396)
T 3c5m_A          165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE  236 (396)
T ss_dssp             CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred             CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence            456789999987642       222234556788999999 78877665543      36888898754322 111211 


Q ss_pred             c--eEEEEEEeCCCEEEEeeCC-----CeEEEEecCCCceeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325          286 K--LAVLCLAAAGKLVFSGSAD-----KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE-DRDSSSS  345 (368)
Q Consensus       286 ~--~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~  345 (368)
                      .  .....++|++++|+.++.+     +.|++||+.++....+..+.+    .. +.|+| +|+.++.
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEE
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEE
Confidence            2  2235788899987776543     459999988764444333322    23 89999 9997775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=2.2e-13  Score=125.55  Aligned_cols=223  Identities=10%  Similarity=0.040  Sum_probs=145.0

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCC-----eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDG-----KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      |...+..++|+  |++|+.+..++     .|++||+.+++......                                 .
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------------------~  169 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------E  169 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------E
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------c
Confidence            44467888888  77887665543     89999998876322100                                 1


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCc----------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEE
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRT----------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFT  212 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~  212 (368)
                      ...+..++|+||++.|+.++.++.                |++|++.+++    .+.....+...+..+.|+|+| +|+.
T Consensus       170 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          170 RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence            112567999999999999988766                9999998775    222222345567889999999 6665


Q ss_pred             EcC-----CCeEEEEEcCC------CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccc
Q 047325          213 GSA-----DGTVKVWKREQ------HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLS  277 (368)
Q Consensus       213 ~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  277 (368)
                      ++.     +..|++||+..      +..     ....+..+...+.. .|+|+++.|+..+..    +.|.+||+.++..
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  323 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE  323 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             EEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            543     67899999975      211     12333344444443 478888877765543    3699999887532


Q ss_pred             -cceeeeccce--EEE--EEEeCCCEEEEeeCCCeEEE--EecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          278 -HGGVLKGHKL--AVL--CLAAAGKLVFSGSADKTICV--WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       278 -~~~~~~~~~~--~~~--~~~~~~~~l~~~~~dg~i~i--w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                       ....+..|..  .+.  ++++++.++++...|+..+|  |++.++  ..+..+..+...+..++++|++..++
T Consensus       324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--ALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--CEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--CEEEecCCCCceEEEEecCCCCCEEE
Confidence             1123333322  343  34445677888888886555  554333  44566666777889999999986554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=4.9e-13  Score=123.30  Aligned_cols=200  Identities=9%  Similarity=-0.028  Sum_probs=132.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCe--------
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDR-----TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGT--------  218 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~--------  218 (368)
                      |...+..++|+|||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+||| .|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            334678899999999998776543     8999999999877643222 236779999999 7777776655        


Q ss_pred             --------EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-----CCcEEEEeCCC------ccccc
Q 047325          219 --------VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-----DGLVNFWEREK------QLSHG  279 (368)
Q Consensus       219 --------i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~  279 (368)
                              |++|++.+...  ....+.....+...+..+.|+|++++|+..+.     +..|++||+.+      +....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                    99999975421  00112222234556789999999999887764     56899999876      42222


Q ss_pred             eeeeccc-eEEEEEEeCCCEEEEeeCC----CeEEEEecCCCceeeeEeeecccc--CeeEEEEecCCeeeecCC--cce
Q 047325          280 GVLKGHK-LAVLCLAAAGKLVFSGSAD----KTICVWRRDGAIHTCLSVLTGHTG--PVKCLAVEEDRDSSSSTS--SCA  350 (368)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~--~~~  350 (368)
                      ..+..+. .....++++++.|+..+.+    +.|.+||+++........+..|..  .+.+++|++++.++++..  +..
T Consensus       280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            2333332 2234578888877766543    369999987653212344445544  688899998777666553  334


Q ss_pred             EEEEE
Q 047325          351 QRWIV  355 (368)
Q Consensus       351 ~~w~l  355 (368)
                      ++|.+
T Consensus       360 ~l~~~  364 (710)
T 2xdw_A          360 TLQLH  364 (710)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=1.4e-12  Score=105.35  Aligned_cols=229  Identities=11%  Similarity=0.029  Sum_probs=152.2

Q ss_pred             CEEEEccCCCcEEEEcCCcc--eecccCCC-CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325           55 DLLYTGSDSKNIRVWKNLKE--FCGFKASS-GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      ++|++++.|+.|.+||..+.  +..+..+. ..+.++.+.  |+.++  +.++.|..||. +++........        
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--------   74 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--------   74 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--------
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--------
Confidence            48999999999999998543  34455554 467777776  66666  45788999998 56544433221        


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC------CCceEEE
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAH------DDAVNSV  202 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~  202 (368)
                                             ....+.++.+.++++++++.+. ++.|..+|. +++.+..+...      ......+
T Consensus        75 -----------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v  130 (276)
T 3no2_A           75 -----------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQI  130 (276)
T ss_dssp             -----------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCC
T ss_pred             -----------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCc
Confidence                                   2245778899999999999887 778888886 78877766521      1234456


Q ss_pred             EeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee
Q 047325          203 VSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV  281 (368)
Q Consensus       203 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  281 (368)
                      ...+++ ++++...++.|..||.+ ++      .+..+... ..+.++...+++++++++..++.|..+|..+++.....
T Consensus       131 ~~~~~G~~lv~~~~~~~v~~~d~~-G~------~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          131 NKNKKGNYLVPLFATSEVREIAPN-GQ------LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SC------EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             eECCCCCEEEEecCCCEEEEECCC-CC------EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            678888 88888999999999987 42      22233222 34556778899999999998889999999877665333


Q ss_pred             eecc-----c--eEEEEEEeCCCEEEEeeCC--------CeEEEEecCCCceeeeEeeecc
Q 047325          282 LKGH-----K--LAVLCLAAAGKLVFSGSAD--------KTICVWRRDGAIHTCLSVLTGH  327 (368)
Q Consensus       282 ~~~~-----~--~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~h  327 (368)
                      ....     -  .....+.+++.++++....        +..++++++. +++.+.++..+
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~  262 (276)
T 3no2_A          203 NANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLNDK  262 (276)
T ss_dssp             EGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEECCT
T ss_pred             cCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEecCc
Confidence            2110     1  1123344577777776311        2345666543 23556665443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=2.3e-13  Score=125.09  Aligned_cols=224  Identities=13%  Similarity=0.057  Sum_probs=143.1

Q ss_pred             CCCCCeeEEEEe--CCEEE-----EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           80 ASSGLVKAIVIS--GEKIF-----TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~-----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      +|...+.+++|+  |++|+     .|+.+..|++||+.+++.......                                
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------------------------------  165 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--------------------------------  165 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc--------------------------------
Confidence            455568888888  77777     344457899999998874311000                                


Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCc-------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRT-------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFTGS  214 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~  214 (368)
                      .......++|+||++.|+.++.|..             |++|++.+++    .+.....+...+..+.|+|+| +|+.++
T Consensus       166 ~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          166 EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred             CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence            0011157899999999999988776             9999998775    333444455678899999999 666666


Q ss_pred             CCC----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccc--cceeeecc
Q 047325          215 ADG----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLS--HGGVLKGH  285 (368)
Q Consensus       215 ~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~  285 (368)
                      .++    .|.+++....       ....+..+...+....+ +++.+++.+.   .++.|.+||+.++..  .......+
T Consensus       246 ~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  317 (695)
T 2bkl_A          246 LRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED  317 (695)
T ss_dssp             EETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred             eCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence            554    5666654322       12333334444455555 5555444444   257899999976542  12233333


Q ss_pred             -ceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeeee
Q 047325          286 -KLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       286 -~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~  344 (368)
                       ...+..+++ ++.++++...|+..++|.++.. ......+..+ ...+..++++|++..++
T Consensus       318 ~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          318 SSASLLSVSIVGGHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             SSCEEEEEEEETTEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence             334444444 5678888889999888876532 2334445444 56688889999987655

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1.3e-11  Score=101.18  Aligned_cols=225  Identities=10%  Similarity=0.045  Sum_probs=146.7

Q ss_pred             CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      .+...+.+++++  +..+++...++.|.+||.. +........                               .....+
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~-------------------------------~~~~~~   59 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLP-------------------------------TPDAKV   59 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECS-------------------------------STTCCE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCC-------------------------------cccCce
Confidence            345678899988  5555555557899999977 432111000                               034568


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE-EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCL-ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      .++++++++.++++...++.|..||.. ++.. ..+......+.++++.+++ .+++...++.|..||. .+..     .
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-----~  132 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-----R  132 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-----E
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-----E
Confidence            899999999877777667889999986 4322 2222245578899999988 5555566889999998 3211     1


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce--EEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL--AVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..........+..+++.+++++.++...++.|..||. ++............  .-+++.+++.+.++...++.|.+|+.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            1112223456889999999988887777889999998 44332211222222  23455567887777667889999988


Q ss_pred             CCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          314 DGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       314 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                       +.... ......+...+.+++++++|.+.++.
T Consensus       212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          212 -SGEIT-EFKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             -TCCEE-EEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             -CCcEE-EEECCCCCCCceeEEECCCCCEEEec
Confidence             44222 12233455678999999999865554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=9e-12  Score=103.06  Aligned_cols=239  Identities=8%  Similarity=0.051  Sum_probs=150.3

Q ss_pred             CcEEEEEecC--CEEEE-------ccCCCcEEEEcCCc-ceecccC-----CCCCeeEEEEe-C-CEEEEEeCCCeEEEE
Q 047325           45 GHIYSLAASK--DLLYT-------GSDSKNIRVWKNLK-EFCGFKA-----SSGLVKAIVIS-G-EKIFTGHQDGKIRVW  107 (368)
Q Consensus        45 ~~i~~~~~~~--~~l~s-------~~~dg~i~iw~~~~-~~~~~~~-----~~~~v~~~~~~-~-~~l~s~~~dg~i~vw  107 (368)
                      ....+++|++  .++++       +..++.|.+||..+ ....+..     +...+.+++++ . ..|+.++.++.|.+|
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~   97 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence            3456788864  36666       57789999999653 3333322     45678899987 4 577777766688899


Q ss_pred             eecCCCcccc-ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-----------
Q 047325          108 KISPKNQSVH-KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-----------  175 (368)
Q Consensus       108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------  175 (368)
                      |.+ ++.... .....  .                          .....+.+++++++++++++...+           
T Consensus        98 d~~-g~~~~~~~~~~~--~--------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSE--G--------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             ETT-SCEEECCSBCTT--S--------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             eCC-CCEEEEEeccCC--C--------------------------ccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence            987 543211 11000  0                          022457889999999877776554           


Q ss_pred             ----CcEEEEEccCCeEEEEeecCCCceEEEEeC----CCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeecccc-c
Q 047325          176 ----RTFKVWRISDSKCLESVSAHDDAVNSVVSS----SEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQE-C  244 (368)
Q Consensus       176 ----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~  244 (368)
                          +.|..+|.. ++...... +......++++    +++ .++. ...++.|.+||.+..+..........+..+. .
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             cCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence                567778765 55443332 33456788898    988 5544 4568999999986211100111112222332 5


Q ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEE-EeeCCCeEEEEecCC
Q 047325          245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVF-SGSADKTICVWRRDG  315 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~~dg~i~iw~~~~  315 (368)
                      .+..+++++++++.++...++.|.+||.+++... .....+...+  ++++++++.|+ +...++.|..|+++.
T Consensus       227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            6788999999998888778889999998855443 2233332333  44557888554 555678899998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=9.8e-13  Score=120.97  Aligned_cols=244  Identities=8%  Similarity=-0.073  Sum_probs=151.4

Q ss_pred             CcCCcEEEEEecCC--EEE-----EccCCCcEEEEcCCcceecccCCCCCe--eEEEEe--CCEEEEEeCCCe-------
Q 047325           42 REEGHIYSLAASKD--LLY-----TGSDSKNIRVWKNLKEFCGFKASSGLV--KAIVIS--GEKIFTGHQDGK-------  103 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~-----s~~~dg~i~iw~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~dg~-------  103 (368)
                      +|...+.+++|+++  +||     .|+.+.+|++||+.+.......+...+  ..++|+  |+.|+.++.|..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            45557888888866  777     566678999999876433211122222  677887  778999888776       


Q ss_pred             ------EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-
Q 047325          104 ------IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-  176 (368)
Q Consensus       104 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  176 (368)
                            |++|++.++........                            ....+...+..+.|+|||++|+..+.++ 
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~----------------------------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVH----------------------------ERTGDPTTFLQSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEE----------------------------CCCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred             CCCCCEEEEEECCCCchhceEEE----------------------------ecCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence                  99999987652110000                            0011456788999999999988887666 


Q ss_pred             ---cEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEc---CCCeEEEEEcCCCCCCcccccceeeccc-cccEEEE
Q 047325          177 ---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS---ADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTAL  249 (368)
Q Consensus       177 ---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~  249 (368)
                         .|.++|..+++. ..+..+...+....+++++.++.+.   .++.|.+||+.....   ......+..+ ...+..+
T Consensus       250 ~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~l~~~  325 (695)
T 2bkl_A          250 SENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR---ASWKEIVPEDSSASLLSV  325 (695)
T ss_dssp             TEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG---GGCEEEECCCSSCEEEEE
T ss_pred             CceEEEEEcCCCCce-EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc---cCCeEEecCCCCCeEEEE
Confidence               777787665543 3444455555566664434334433   258899999876421   0011222222 4567888


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCC-Cccccceeeecc-ceEEE--EEEeCCCEEE----EeeCCCeEEEEecCCCcee
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGH-KLAVL--CLAAAGKLVF----SGSADKTICVWRRDGAIHT  319 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~~~--~~~~~~~~l~----~~~~dg~i~iw~~~~~~~~  319 (368)
                      +++ ++.++++...|+..++|.+. .+... ..+..+ ...+.  +++++++.++    +....++|++||+.++...
T Consensus       326 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~-~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          326 SIV-GGHLSLEYLKDATSEVRVATLKGKPV-RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEEETTCCEE-EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEE-CCEEEEEEEECCEEEEEEEeCCCCee-EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            888 67788888899988887654 22222 222222 44443  3456777666    3334578999999876433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=1e-13  Score=116.04  Aligned_cols=173  Identities=12%  Similarity=0.051  Sum_probs=122.6

Q ss_pred             cEEEEEecCC--EEEEccCCCcEEEEcCCcce------------ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325           46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKEF------------CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~------------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~  111 (368)
                      +++.|++++.  ++++|+.|+ +++|++....            .....+.. |+.++|++..|+++ .++.|++||+.+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchh
Confidence            4667777644  888888885 5569754221            11223555 99999988899988 889999999987


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      ......                                ...|...+.++.+.+.  .+++++.||.|.+||+.+++... 
T Consensus       116 l~~~~~--------------------------------~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A          116 LSEFRT--------------------------------VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             TTCEEE--------------------------------EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred             hhccCc--------------------------------cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence            652111                                1125666777777654  38889999999999999877653 


Q ss_pred             eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC--Ccccccceeec---cccccEEEEEEcCCCCEEEE
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK--GTKHSLAQTLL---KQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~  260 (368)
                         +...|+|++|+|+| ++.|..||.+++|+......  .........+.   .|...|.++.|.+++.++++
T Consensus       161 ---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ---EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence               34589999999999 77899999999998875421  00000000112   36788999999999988876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=2.7e-11  Score=99.31  Aligned_cols=215  Identities=14%  Similarity=0.127  Sum_probs=136.8

Q ss_pred             CeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           84 LVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        84 ~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      .-.+..|+   +..+++...++.|..||..++....                                  ......+.++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------~~~~~~~~~i   59 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------VTMDAPVSSV   59 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----------------------------------EECSSCEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------------EeCCCceEEE
Confidence            34566676   3355566678899999987664211                                  0134678899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec----CCCceEEEEeCCCCeEEEEcC----------CCeEEEEEcCC
Q 047325          161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA----HDDAVNSVVSSSEGLIFTGSA----------DGTVKVWKREQ  226 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~----------dg~i~i~d~~~  226 (368)
                      +++++++++++ . ++.|.+||..+++.......    ....++.+++.|+|.++.++.          ...-.+|.+..
T Consensus        60 ~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           60 ALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            99999995544 4 56799999988875443322    124578899999994444431          12334555443


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCC--Ccccc----ceeeeccceE--EEEEEeCCC
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWERE--KQLSH----GGVLKGHKLA--VLCLAAAGK  297 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~----~~~~~~~~~~--~~~~~~~~~  297 (368)
                      ...      .............++|+|+++.|+ +.+.++.|.+||+.  ++...    ......+...  -++++++|+
T Consensus       138 ~g~------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          138 DHH------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             TSC------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             CCC------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            221      112223334568899999998664 55667899999873  33221    1111112122  255667888


Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCee
Q 047325          298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRDS  342 (368)
Q Consensus       298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~  342 (368)
                      +.++...++.|.+||.+++  +.+..+..+...+++++|. |++..
T Consensus       212 lwva~~~~~~v~~~d~~tG--~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTG--KRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EEEEEETTTEEEEECTTTC--CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             EEEEEcCCCEEEEEcCCCc--eEEEEEECCCCCceEEEEeCCCCCE
Confidence            8888777889999987755  5666676676789999998 77764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=4.5e-11  Score=98.85  Aligned_cols=234  Identities=12%  Similarity=0.077  Sum_probs=143.2

Q ss_pred             CCCeeEEEEe--CCEEEE-------EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           82 SGLVKAIVIS--GEKIFT-------GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        82 ~~~v~~~~~~--~~~l~s-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      -....+++|+  +..+++       +..++.|.+||..+++.......                            ...+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------------------------~~~~   68 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----------------------------EVNG   68 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----------------------------EETT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----------------------------ccCC
Confidence            3445788887  555555       46789999999876653211100                            0001


Q ss_pred             cCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEE-eec----CCCceEEEEeCCCC-eEEEEcCC---------
Q 047325          153 HSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLES-VSA----HDDAVNSVVSSSEG-LIFTGSAD---------  216 (368)
Q Consensus       153 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~-~l~~~~~d---------  216 (368)
                      +...+.+++++++ ++++ .++..+.|.+||.. ++.... ...    ....+.++++.+++ .+++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLF-VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEE-EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEE-EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            3356889999998 6544 44445579999988 765433 221    12357899999999 44444443         


Q ss_pred             ------CeEEEEEcCCCCCCcccccceeeccccccEEEEEEc----CCCCEEEEe-cCCCcEEEEeCC-Cccc----cce
Q 047325          217 ------GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS----SSRSIVYCG-SSDGLVNFWERE-KQLS----HGG  280 (368)
Q Consensus       217 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~----~~~  280 (368)
                            +.|..+|.. . .      .............++++    |+++.|+.+ ..++.|.+||.+ .+..    ...
T Consensus       147 ~~~~~~~~l~~~~~~-g-~------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~  218 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-G-Q------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             TTSSSCEEEEEECTT-S-C------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccCCCCeEEEECCC-C-C------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence                  567777654 2 1      11122233456788999    998765544 567899999976 2221    111


Q ss_pred             eeeccc-e--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecCCcceEEEEE
Q 047325          281 VLKGHK-L--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSSTSSCAQRWIV  355 (368)
Q Consensus       281 ~~~~~~-~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~~~w~l  355 (368)
                      ....+. .  .-++++++|+++++...++.|.+||.+++  +.+..+..+...+.+++|+|++. +.++......++.+
T Consensus       219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC--cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence            122221 2  22556677888888778899999987744  34445555667899999999998 43444443444444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.49  E-value=3.4e-10  Score=100.46  Aligned_cols=290  Identities=11%  Similarity=0.090  Sum_probs=168.5

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--c--ceecccCCCCCeeEEEEe------CCEEEEEe
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--K--EFCGFKASSGLVKAIVIS------GEKIFTGH   99 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~--~~~~~~~~~~~v~~~~~~------~~~l~s~~   99 (368)
                      ...+++.++... ..+..+.++++  ++++++.|+.|.+||+.  +  .+..+... .....++++      |++++++.
T Consensus       185 ~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          185 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence            334555555432 24557777654  88888999999999984  2  22233332 234566776      66777665


Q ss_pred             C-CCeEEEEeecCCCccccccCCcc----------ccceeeeeccCCCCceeEecccc-------------eeeeeecCC
Q 047325          100 Q-DGKIRVWKISPKNQSVHKRAGTL----------PTLKDIFKSSIKPSNYIEVRRHR-------------TALWIRHSD  155 (368)
Q Consensus       100 ~-dg~i~vw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  155 (368)
                      . ++.|.++|..+.+..........          +....+......+..++......             .........
T Consensus       263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~  342 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  342 (567)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence            4 69999999888766544332211          01111111111111111111000             001112334


Q ss_pred             CEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCC--eEEEEc-CCCeEEEEEcCC
Q 047325          156 AVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEG--LIFTGS-ADGTVKVWKREQ  226 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~--~l~~~~-~dg~i~i~d~~~  226 (368)
                      ...++.|+|++++++++. .++.|.++|+.+++.+..+..     |.+.-.. .++|++  .++++. .++.|.++|...
T Consensus       343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            566789999999887766 578999999999998777654     3221112 257774  444443 468999999876


Q ss_pred             CCC-CcccccceeeccccccEEEEEEcCCCCEEEEecC-------CCcEEEEeCCCc-----cccceeee----------
Q 047325          227 HGK-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-------DGLVNFWEREKQ-----LSHGGVLK----------  283 (368)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~-----~~~~~~~~----------  283 (368)
                      .+. ....+.+..+......-..+..+|++++|.+...       .+.|.++|+.+.     ......+.          
T Consensus       422 ~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  501 (567)
T 1qks_A          422 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG  501 (567)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred             CCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence            321 1112344444443333345778999999998663       358999998865     22111221          


Q ss_pred             ccceEEEEEEeCCCEEEEee-----CCCeEEEEecCCCceeeeEeeec
Q 047325          284 GHKLAVLCLAAAGKLVFSGS-----ADKTICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~  326 (368)
                      +....-..++++|+.+..+.     .++.|.|+|..+.  +.+..++.
T Consensus       502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~--~~~~~i~~  547 (567)
T 1qks_A          502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL--ELKHVIKD  547 (567)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEECC
T ss_pred             CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc--eEEEEeCC
Confidence            11222356667888777663     3799999988776  55566553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=3.6e-11  Score=102.89  Aligned_cols=218  Identities=8%  Similarity=0.072  Sum_probs=140.6

Q ss_pred             CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      .....|+++  ++.+++...++.|++||.+++.......                                 ...... +
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i  176 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P  176 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence            356788887  4555555567899999987664321111                                 112223 8


Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEe---ec-CCCceEEEEeCC-CCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          161 SLDQDCGLLYTASWDR--TFKVWRISDSKCLESV---SA-HDDAVNSVVSSS-EGLIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      +|+++++.|+++..++  .|..+|...+.....+   .. ....+.+++++| ++.|+.+..++.|+.||......    
T Consensus       177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----  252 (409)
T 3hrp_A          177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----  252 (409)
T ss_dssp             EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----
T ss_pred             eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----
Confidence            9999999999888766  7999998765543333   12 445678899999 56666677789999999875421    


Q ss_pred             cccee--ecccccc--EEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeecc-----------------ceEEEE
Q 047325          234 SLAQT--LLKQECA--VTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-----------------KLAVLC  291 (368)
Q Consensus       234 ~~~~~--~~~~~~~--i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~  291 (368)
                      .....  ..+....  ...++|+|+ +.++++-..++.|+.|+......   .+.++                 ...-++
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia  329 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMT  329 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence            11100  1111111  128999995 66666667788999999765311   11111                 123367


Q ss_pred             EEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeecc---------------ccCeeEEEEecCCeeee
Q 047325          292 LAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGH---------------TGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       292 ~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~  344 (368)
                      ++++++++++-. .++.|+.|++..+.   +..+.++               -.....|++++++.+++
T Consensus       330 ~d~dG~lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV  395 (409)
T 3hrp_A          330 VDEDGNFYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI  395 (409)
T ss_dssp             ECTTCCEEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred             EeCCCCEEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence            778899888877 88999999966552   2333333               24588999999988433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.47  E-value=1e-10  Score=100.10  Aligned_cols=230  Identities=10%  Similarity=0.094  Sum_probs=145.7

Q ss_pred             CcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCC--eEEEEeecCCCcccc
Q 047325           45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDG--KIRVWKISPKNQSVH  117 (368)
Q Consensus        45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~vw~~~~~~~~~~  117 (368)
                      .....|+++++  ++++...++.|++||.... +..+........ ++++  ++.|+++..++  .|.+++...+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            35778888755  6677777899999998743 333222222223 6666  77888888766  788888765432111


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE----ee
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES----VS  193 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~  193 (368)
                      ...  .                          .......+.+++++|++..|+.+..++.|..||..++.....    ..
T Consensus       210 ~g~--~--------------------------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          210 IGQ--L--------------------------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             EEE--C--------------------------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             eee--c--------------------------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            100  0                          000234567899999555666677788999999987754322    22


Q ss_pred             cCCCce--EEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc---------------cccEEEEEEcCC
Q 047325          194 AHDDAV--NSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ---------------ECAVTALVVSSS  254 (368)
Q Consensus       194 ~~~~~v--~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~  254 (368)
                      ++...-  ..++++|+ + ++++-..++.|+.|+....        ...+.++               -.....++++|+
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence            222222  28999995 5 5566667889999987632        1111111               134789999999


Q ss_pred             CCEEEEec-CCCcEEEEeCCCccccceeeecc-----------------ceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          255 RSIVYCGS-SDGLVNFWEREKQLSHGGVLKGH-----------------KLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       255 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ++++++-. .++.|+.|++.++...  .+.++                 ...-+++++++.++++-..++.|+.+++
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v~--~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYVS--TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEEE--EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEEE--EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99888877 8899999997655432  22221                 1233667777777777777888887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=3.6e-12  Score=106.69  Aligned_cols=171  Identities=10%  Similarity=-0.011  Sum_probs=122.4

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-----------EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-----------CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                      .+..+++++...++++|+.++ +.+|++.+.+           +.... .+.. |..++|  ++ .|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999875 6679875433           11222 3555 999999  55 77777 889999999


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  303 (368)
                      ++....      ......++..+..+.+.+.  .+++++.||.|.+||+.++... .    +...+.|+++..+-++.|.
T Consensus       113 v~sl~~------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-~----~~~~Vs~v~WSpkG~~vg~  179 (388)
T 1xip_A          113 LEELSE------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-Q----LAQNVTSFDVTNSQLAVLL  179 (388)
T ss_dssp             SSSTTC------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-E----EEESEEEEEECSSEEEEEE
T ss_pred             chhhhc------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-c----ccCCceEEEEcCCceEEEE
Confidence            986532      2233445566778777654  3888899999999999865542 1    2234444444433378899


Q ss_pred             CCCeEEEEecCCCceeeeEee------e---ccccCeeEEEEecCCeeeec
Q 047325          304 ADKTICVWRRDGAIHTCLSVL------T---GHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~~~~~~  345 (368)
                      .||.+++|+.+........++      .   +|...|.+|.|.+++.++++
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999998877632113344      2   37788999999999998775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=2.4e-10  Score=96.48  Aligned_cols=246  Identities=8%  Similarity=-0.028  Sum_probs=147.2

Q ss_pred             cEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceeee
Q 047325           65 NIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        65 ~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      +|.++|..+.  +..+.....+  .+.++  +++++.+.          .++.|.+||..+.+............     
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-----  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----
Confidence            7899997643  2233332333  66666  77888875          36789999998765433222110000     


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEE-eecCCCceEEEEeCCC
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLES-VSAHDDAVNSVVSSSE  207 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~  207 (368)
                                        ..  +......+.++||+++|+++..  ++.|.++| .+++.+.. +....    ++.+.|+
T Consensus       121 ------------------~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~  175 (373)
T 2mad_H          121 ------------------FD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPG  175 (373)
T ss_pred             ------------------cc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeC
Confidence                              00  1123347899999999998874  47899999 99998877 65322    2334454


Q ss_pred             C--eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc-EEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-ceee-
Q 047325          208 G--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA-VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-GGVL-  282 (368)
Q Consensus       208 ~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-  282 (368)
                      +  .+++.+.||.+.++|. .+............ ....+ .....+.+++..++..+.++.+.+.|+...... ...+ 
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~  253 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence            4  6667788999999999 54321000000001 11112 123455666555554457789999998653211 0111 


Q ss_pred             -----------eccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          283 -----------KGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       283 -----------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                                 .......+.++++++.++++..          ++.|.++|..+.  +.+.++. -.....+++|+|||+
T Consensus       254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~-~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQIS-LGHDVDAISVAQDGG  330 (373)
T ss_pred             ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEE-CCCCcCeEEECCCCC
Confidence                       1122233678888888777653          357999988776  6666664 334689999999998


Q ss_pred             -eeecCC
Q 047325          342 -SSSSTS  347 (368)
Q Consensus       342 -~~~~~~  347 (368)
                       .+.++.
T Consensus       331 ~~l~v~~  337 (373)
T 2mad_H          331 PDLYALS  337 (373)
T ss_pred             eEEEEEc
Confidence             554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=2.3e-10  Score=93.81  Aligned_cols=227  Identities=11%  Similarity=0.079  Sum_probs=137.6

Q ss_pred             cEEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325           46 HIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA  120 (368)
Q Consensus        46 ~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  120 (368)
                      -..+..|+++   ++++...++.|..||..............+.+++++  ++ |+.+. ++.|.+||.++++.......
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEec
Confidence            3446677652   777778889999999875433333345678999998  55 55555 56889999876643211110


Q ss_pred             CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC---------CcEEEEEccC-CeEEE
Q 047325          121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD---------RTFKVWRISD-SKCLE  190 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~-~~~~~  190 (368)
                      ...                            .....+..++++|+|+++++...+         ..-.+|.+.. ++...
T Consensus        92 ~~~----------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~  143 (297)
T 3g4e_A           92 DND----------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK  143 (297)
T ss_dssp             CTT----------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred             CCC----------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence            000                            012347889999999866654321         2234554432 33333


Q ss_pred             EeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          191 SVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       191 ~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                       +.......+.++|+|++ .| ++.+.++.|..||+.. .+..........+......+..++++++|++.++....+.|
T Consensus       144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence             33333456889999998 44 5666789999999842 21111111122223344567899999999888887778889


Q ss_pred             EEEeCCCccccceeeecc--ceEEEEEE-eCCCEEEEeeC
Q 047325          268 NFWEREKQLSHGGVLKGH--KLAVLCLA-AAGKLVFSGSA  304 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~~~~  304 (368)
                      ..||.++++... .+..+  ....++|. ++++.|++++.
T Consensus       223 ~~~d~~tG~~~~-~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          223 IRLDPVTGKRLQ-TVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECTTTCCEEE-EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEcCCCceEEE-EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            999998665543 33333  23335555 56666555443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.45  E-value=1.1e-11  Score=114.84  Aligned_cols=224  Identities=13%  Similarity=0.042  Sum_probs=139.8

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCC-----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQD-----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      |...+..+.|+  |++|+.++.+     ..|++||+.+++......                                 +
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---------------------------------~  207 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---------------------------------K  207 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---------------------------------E
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---------------------------------C
Confidence            33467788888  7788776543     369999999886421100                                 1


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCc--------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRT--------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFTGS  214 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~  214 (368)
                      ...+..++|+|| +.|+.+..++.              |.+|++.+++    .+.....+...+..+.|+|+| +|+..+
T Consensus       208 ~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  286 (741)
T 1yr2_A          208 WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS  286 (741)
T ss_dssp             EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence            112346899999 98888876654              8899987765    222222233458899999999 666655


Q ss_pred             CC-----CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC----CCcEEEEeCCCcc-ccceeeec
Q 047325          215 AD-----GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS----DGLVNFWEREKQL-SHGGVLKG  284 (368)
Q Consensus       215 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~  284 (368)
                      .+     ..|++||+..+..    .....+..+........ +|+++.|+..+.    ++.|.+||+.++. ........
T Consensus       287 ~~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~  361 (741)
T 1yr2_A          287 SEGTDPVNTVHVARVTNGKI----GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE  361 (741)
T ss_dssp             ECTTCSCCEEEEEEEETTEE----CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred             EccCCCcceEEEEECCCCCC----cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence            43     4899999875410    00222333333333333 488888877665    3459999988642 22233444


Q ss_pred             cceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeeee
Q 047325          285 HKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       285 ~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~  344 (368)
                      +...+..+++ ++.++++...|+..++|.++.. ......+.. +...+..++++|++..++
T Consensus       362 ~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          362 SKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             CSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEE
Confidence            4444545555 4567788888998888866532 133444443 356788999999987555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.44  E-value=6.7e-11  Score=100.51  Aligned_cols=236  Identities=8%  Similarity=0.038  Sum_probs=137.4

Q ss_pred             EEecCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           50 LAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        50 ~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      +...++.++.++.++.|..+|..+...  .+.............++.++.++.++.|..+|..+++............  
T Consensus        99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--  176 (376)
T 3q7m_A           99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--  176 (376)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--
Confidence            334455677777778888888764322  2222222222233446777888888888888887776544332211000  


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----eE---
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----VN---  200 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~---  200 (368)
                                           .......    ....  +..++++..++.|..+|..+++.+.........    +.   
T Consensus       177 ---------------------~~~~~~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  229 (376)
T 3q7m_A          177 ---------------------SLRGESA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS  229 (376)
T ss_dssp             -----------------------CCCCC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred             ---------------------eecCCCC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence                                 0000011    1111  346788888999999999999988766532110    00   


Q ss_pred             EEEeC---CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325          201 SVVSS---SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       201 ~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  277 (368)
                      .+...   .++.++.++.++.+..+|.+++..      .-...  ......+..  ++..++.++.++.+..+|.++++.
T Consensus       230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~------~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQI------MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             CCCCCCEEETTEEEEECTTSCEEEEETTTCCE------EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             ccCCCcEEECCEEEEEecCcEEEEEECCCCcE------Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence            01111   245788888899999999987632      11111  122333433  356788888899999999988766


Q ss_pred             cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325          278 HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  326 (368)
                      ..................+..|+.++.+|.|+++|..++  +.+.....
T Consensus       300 ~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG--~~~~~~~~  346 (376)
T 3q7m_A          300 LWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG--RFVAQQKV  346 (376)
T ss_dssp             EEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEEEEC
T ss_pred             EEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC--cEEEEEec
Confidence            533221111112222234678888999999999998876  44554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=7.7e-10  Score=90.65  Aligned_cols=225  Identities=12%  Similarity=0.080  Sum_probs=144.4

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ....+.+++++  +...++...++.|.+||.. ++... ....                              .....+.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------------------------------~~~~~~~   65 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------------------------------TPDAKVM   65 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------------------------------STTCCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------------------------------CCCCcce
Confidence            34567888887  5555555568999999876 43211 0000                              1335688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      ++++.+++.++++...++.|..+|.. ++... .+......+.++++.+++ .+++...++.|..+|.. +..     ..
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-----~~  138 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-----YE  138 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-----EE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-----EE
Confidence            99999999877776667889999987 55432 222234678899999988 55555557899999886 211     11


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .........+..+++.+++++.++...++.|..+|.. +.........+....  +++.+++.+.++....+.|.+|+..
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            1122234568899999999977777667889999984 332211111222223  4455667777776677889999873


Q ss_pred             CCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                      ..  ........+...+.+++++++|.+.++..
T Consensus       218 g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          218 GE--ISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             CC--EEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             Cc--EEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            22  11222333456789999999998655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=3e-11  Score=111.92  Aligned_cols=200  Identities=15%  Similarity=0.045  Sum_probs=123.5

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCC----------
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADG----------  217 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg----------  217 (368)
                      |...+..++|+|||++|+.+..+     ..|++||+.+++.+... .+...+..++|+||..|+.+..++          
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence            33467889999999998877654     36999999999876532 122223578899987555555544          


Q ss_pred             ----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCccc--cceeeeccc
Q 047325          218 ----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWEREKQLS--HGGVLKGHK  286 (368)
Q Consensus       218 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~  286 (368)
                          .|++|++.+...  ....+.....+...+..+.|+|||++|+..+.++     .|++||+.++..  .........
T Consensus       240 ~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             CCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             CCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                388999865421  0112222222334588999999999888877543     899999876521  222222222


Q ss_pred             eEEEEEEeCCCEEEEeeC----CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEEe
Q 047325          287 LAVLCLAAAGKLVFSGSA----DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIVY  356 (368)
Q Consensus       287 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l~  356 (368)
                      .....+.++++.|+..+.    ++.|.+||+++........+..+...+.+++++ ++.++++.  ++..++|.+-
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            333445688988887765    455999998763212222334455567788887 44544443  3455666553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=1.8e-09  Score=89.61  Aligned_cols=224  Identities=9%  Similarity=-0.034  Sum_probs=132.4

Q ss_pred             EEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325           47 IYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        47 i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  122 (368)
                      ..+..|+++   ++++...++.|..||..............+.++.++ ...++.++.+ .|.+||..+++.........
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~  129 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES  129 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCC
Confidence            346677653   677777789999999875432222234678899887 4444555554 48889987665321111000


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEeecCC
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESVSAHD  196 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~  196 (368)
                      .                            .....+.++.++|+++++++...      .+.|..+|  +++... +....
T Consensus       130 ~----------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~  178 (326)
T 2ghs_A          130 D----------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI  178 (326)
T ss_dssp             T----------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE
T ss_pred             C----------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC
Confidence            0                            01235788999999987665432      24555555  555433 32233


Q ss_pred             CceEEEEeCCCC-eE-EEEcCCCeEEEEEcC--CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          197 DAVNSVVSSSEG-LI-FTGSADGTVKVWKRE--QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      .....++|+|++ .+ ++...++.|.+||+.  .+-..........+......+..+++++++++.++...++.|..||.
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            456789999999 44 455667899999986  22011111111222223455788999999987777766788999998


Q ss_pred             CCccccceeeeccceEE--EEEE-eCCCEEEEeeC
Q 047325          273 EKQLSHGGVLKGHKLAV--LCLA-AAGKLVFSGSA  304 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~~~  304 (368)
                      . ++.. ..+..+...+  .++. ++++.|++++.
T Consensus       259 ~-g~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          259 D-GNHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             T-CCEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             C-CCEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            4 3332 2333333233  4455 56666655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=3.6e-10  Score=93.03  Aligned_cols=213  Identities=12%  Similarity=0.154  Sum_probs=129.7

Q ss_pred             CCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           81 SSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        81 ~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      .........|+  ++ .+++...++.|..|+.. ++..                                 .+..+...+
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------------------------~~~~~~~~~   88 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------------------------VLLDATAFT   88 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------------------------EEEESCSCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------------------------EEeCCCCcc
Confidence            33445567776  55 56677778899999863 3211                                 111245668


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCCeEEE-----EcC-------------
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEGLIFT-----GSA-------------  215 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~~-------------  215 (368)
                      ..++++++++++++...++.|..||.. ++........    ...+..+++.++|.+..     |..             
T Consensus        89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A           89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            899999999866665556789999985 5533222111    13467899999994444     332             


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC------CcEEEEeCCCccccc-eeee-ccc-
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD------GLVNFWEREKQLSHG-GVLK-GHK-  286 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~~-~~~-  286 (368)
                      .+.|..+|...+..       .... .......++|+|+++.|+.+...      +.|.+|++....... ..+. ... 
T Consensus       168 ~~~v~~~d~~~g~~-------~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          168 HHSVYRLPPDGSPL-------QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CEEEEEECSSSCCC-------EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             CCeEEEEcCCCCcE-------EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence            25677777654321       1111 33456789999999988777665      689999986532100 0110 000 


Q ss_pred             -eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          287 -LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       287 -~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                       ..-++++++|++ .++..+ .|.+|+.+.   +.+..+..+. .+.+++|++++..
T Consensus       240 ~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g---~~~~~~~~~~-~~~~~~f~~d~~~  290 (305)
T 3dr2_A          240 LPDGFCVDRGGWL-WSSSGT-GVCVFDSDG---QLLGHIPTPG-TASNCTFDQAQQR  290 (305)
T ss_dssp             CCCSEEECTTSCE-EECCSS-EEEEECTTS---CEEEEEECSS-CCCEEEECTTSCE
T ss_pred             CCCeEEECCCCCE-EEecCC-cEEEECCCC---CEEEEEECCC-ceeEEEEeCCCCE
Confidence             112456677884 444445 499998743   3445554444 5899999998873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=7.7e-10  Score=91.87  Aligned_cols=209  Identities=12%  Similarity=0.095  Sum_probs=130.5

Q ss_pred             eEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           86 KAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        86 ~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      .+..|+   +..+++...++.|..||..+++....                                  .....+.++.+
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~----------------------------------~~~~~v~~i~~   97 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH----------------------------------ALPFMGSALAK   97 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE----------------------------------ECSSCEEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE----------------------------------ECCCcceEEEE
Confidence            455666   23556666788999999876542110                                  03356889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeec----CCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCCc
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSA----HDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKGT  231 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~  231 (368)
                      +++++++++. .+ .|.+||..+++.......    ....+.+++++|+|.++.++.       .+.|..++  .+ .  
T Consensus        98 ~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~--  170 (326)
T 2ghs_A           98 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K--  170 (326)
T ss_dssp             EETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E--
T ss_pred             eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c--
Confidence            9998876654 44 499999988775433221    123588999999994444432       24555555  22 1  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCC--Cc-ccc-ceee---eccceE--EEEEEeCCCEEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWERE--KQ-LSH-GGVL---KGHKLA--VLCLAAAGKLVFS  301 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~-~~~~---~~~~~~--~~~~~~~~~~l~~  301 (368)
                          ...+.........++|+|+++.++.+ +.++.|.+||+.  ++ ... ...+   ......  -++++.+|.+.++
T Consensus       171 ----~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          171 ----VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             ----EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             ----EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence                11122223456789999999876544 567899999985  44 211 0111   111122  2445567887777


Q ss_pred             eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCee
Q 047325          302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRDS  342 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~  342 (368)
                      ...++.|.+|+.+.   +.+..+..+...+++++|+ +++..
T Consensus       247 ~~~~~~v~~~d~~g---~~~~~i~~~~~~~~~~af~g~d~~~  285 (326)
T 2ghs_A          247 RWGEGAVDRYDTDG---NHIARYEVPGKQTTCPAFIGPDASR  285 (326)
T ss_dssp             EETTTEEEEECTTC---CEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             EeCCCEEEEECCCC---CEEEEEECCCCCcEEEEEecCCCCE
Confidence            76778999998743   4455666666679999998 88764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=7e-11  Score=98.42  Aligned_cols=256  Identities=13%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             CceeeeccCcCCcEEEEEec-CCEEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325           34 NGLIGSLVREEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~  111 (368)
                      ++.+.....+...+.++..+ ...|+.++.+  |..+|.... ...+.............++.++.++.++.|..+|.. 
T Consensus        49 g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-  125 (330)
T 3hxj_A           49 GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-  125 (330)
T ss_dssp             SCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-
T ss_pred             CcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-
Confidence            33333333333445666665 3366666665  777775322 222332333333344447788888888888888877 


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES  191 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (368)
                      ++.......                                ....+.++...+++. ++.++.++.|..+|.. ++.+..
T Consensus       126 g~~~~~~~~--------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A          126 GTEKWRFKT--------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             SCEEEEEEC--------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred             CCEEEEEcC--------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence            443222111                                222344556666665 6667778999999998 887777


Q ss_pred             eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      +......+.++...+++.+..++  +.|..+| ..+.      ...........+.++...+++. |..++.++.+..+|
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT------EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN  241 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC------EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred             EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc------EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence            76666667777787788777777  8899999 4332      1222223334567777887765 55566677888887


Q ss_pred             CCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ... ..... ..........+..+ +..|..++.+|.|..+|. .+  +.+..+......+.++...+++.
T Consensus       242 ~~g-~~~~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g--~~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          242 PDG-TEKWR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DG--TEKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             TTS-CEEEE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TS--CEEEEEECSSCCCSCCEECTTCC
T ss_pred             CCC-CEeEE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CC--cEEEEEEcCCccccceEEcCCCE
Confidence            543 33222 22111111122223 556777888989999985 33  44444444455677777777776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.4e-10  Score=95.38  Aligned_cols=237  Identities=8%  Similarity=0.047  Sum_probs=144.4

Q ss_pred             eeeeccCcCCcEEEEEecC--C-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325           36 LIGSLVREEGHIYSLAASK--D-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        36 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~  110 (368)
                      .+..+..+........|++  + +++++..++.|..|+.......+..+...+..++++  |+.+++...++.|.+|+.+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            3444555555667777764  4 778888899999999866566666677788999998  5544444455789999875


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE----EeC------------
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT----ASW------------  174 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~------------  174 (368)
                       ++........                            .......+.++++.++|++.++    |..            
T Consensus       116 -g~~~~~~~~~----------------------------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~  166 (305)
T 3dr2_A          116 -GQAHLLVGRY----------------------------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL  166 (305)
T ss_dssp             -SCEEEEECEE----------------------------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred             -CCEEEEEecc----------------------------CCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence             3311100000                            0002245678999999987776    321            


Q ss_pred             -CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          175 -DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       175 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                       .+.|..+|..+++.....  .......++|+|++ .|+.+...      +.|..|++..... ......  ........
T Consensus       167 ~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~--~~~~~~~p  241 (305)
T 3dr2_A          167 AHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHF--ASVPDGLP  241 (305)
T ss_dssp             SCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEE--ECCSSSCC
T ss_pred             CCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEE--EECCCCCC
Confidence             256888887666654433  33456789999999 56666554      7899999864320 000010  11122334


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  309 (368)
                      ..++++++|++ .++..+| |.+|+.... ............-+++.++++.|+.++.++..+
T Consensus       242 dgi~~d~~G~l-wv~~~~g-v~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          242 DGFCVDRGGWL-WSSSGTG-VCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CSEEECTTSCE-EECCSSE-EEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CeEEECCCCCE-EEecCCc-EEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCeEEE
Confidence            56889999984 4444544 999998543 322222222233355667888888877765333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=2e-10  Score=95.87  Aligned_cols=243  Identities=10%  Similarity=0.037  Sum_probs=147.3

Q ss_pred             CCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCcccccee
Q 047325           63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  128 (368)
                      ++.|.+.|..+.  +..+..-..+  .+.++  +++++++.          .++.|.+||..+.+.........-...  
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~--  133 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF--  133 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc--
Confidence            679999998643  3333333333  37776  77777665          367899999998775443321100000  


Q ss_pred             eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCC
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSS  206 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  206 (368)
                                             ........+.++|||++++++..  ++.|.++|+.+++.+.++.....   ...+ |
T Consensus       134 -----------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~-P  186 (386)
T 3sjl_D          134 -----------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF-P  186 (386)
T ss_dssp             -----------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE-E
T ss_pred             -----------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee-c
Confidence                                   01123456899999999998874  68999999999999998864321   1222 4


Q ss_pred             CC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE-EEEEc-CCCCEEEEecCCCcEEEEeCCCccc-ccee
Q 047325          207 EG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT-ALVVS-SSRSIVYCGSSDGLVNFWEREKQLS-HGGV  281 (368)
Q Consensus       207 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~  281 (368)
                      .+  .+++.+.||++.+.++...++... .....+.....++. ...|. ++|++++ .+.+|.|++.|+.+... ....
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence            33  667888899999999875332110 00011111111221 13453 5776555 45579999999875431 1111


Q ss_pred             e------------eccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          282 L------------KGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       282 ~------------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      .            .........++++++.++....          .+.|.+.|+.+.  +.+..+.. ..++.+|++++|
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~i~v-g~~~~~lavs~D  341 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEM-GHEIDSINVSQD  341 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEE-EEEECEEEECSS
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--eEEEEEEC-CCCcceEEECCC
Confidence            1            1122234677888888887643          246888877776  55666542 347889999999


Q ss_pred             Ce
Q 047325          340 RD  341 (368)
Q Consensus       340 ~~  341 (368)
                      ++
T Consensus       342 ~~  343 (386)
T 3sjl_D          342 EK  343 (386)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=7.8e-09  Score=87.21  Aligned_cols=246  Identities=7%  Similarity=0.023  Sum_probs=150.1

Q ss_pred             CCCceeeeccCcCCcEEEEEecCC--EEEEcc----------CCCcEEEEcCCcc--eecccCC-------CCCeeEEEE
Q 047325           32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGS----------DSKNIRVWKNLKE--FCGFKAS-------SGLVKAIVI   90 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~----------~dg~i~iw~~~~~--~~~~~~~-------~~~v~~~~~   90 (368)
                      ...+++.++.....+  .++++++  +++.+.          .++.|.+||..+.  .......       ...-..+.+
T Consensus        55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~  132 (373)
T 2mad_H           55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence            345556666544444  6666644  666654          3678999998642  2221111       122335666


Q ss_pred             e--CCEEEEEeC--CCeEEEEeecCCCcccc-ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           91 S--GEKIFTGHQ--DGKIRVWKISPKNQSVH-KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        91 ~--~~~l~s~~~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      +  |++|+++..  ++.|.++| .+++.... ...                                 ..   ++.+.|+
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~~---~~~~~~~  175 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------PT---CYHIHPG  175 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------Cc---eEEEEeC
Confidence            5  888988874  57899999 87764322 111                                 11   2344454


Q ss_pred             C-CEEEEEeCCCcEEEEEccCCeEEEEee-----cCCCce-EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          166 C-GLLYTASWDRTFKVWRISDSKCLESVS-----AHDDAV-NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       166 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      + ..+++.+.||.+.++|. +++......     ....++ ....+.+++ .++..+..+.+.+.|+.....    ....
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~  250 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKA  250 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEee
Confidence            4 45666778999999999 877664322     111221 223344444 444444678999999864321    0111


Q ss_pred             eec----------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325          238 TLL----------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK  297 (368)
Q Consensus       238 ~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (368)
                      .+.          ........+.++|+++.++.+..          ++.|.++|..+.+.......++...-+.+++|++
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence            110          01233455788999998877653          3579999999887765555555566688999999


Q ss_pred             -EEEEee-CCCeEEEEecCCCceeeeEe
Q 047325          298 -LVFSGS-ADKTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       298 -~l~~~~-~dg~i~iw~~~~~~~~~~~~  323 (368)
                       +++++. .++.|.++|..+.  +.+..
T Consensus       331 ~~l~v~~~~~~~V~ViD~~t~--~vv~~  356 (373)
T 2mad_H          331 PDLYALSAGTEVLHIYDAGAG--DQDQS  356 (373)
T ss_pred             eEEEEEcCCCCeEEEEECCCC--CEEee
Confidence             788877 5899999998876  44554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.34  E-value=3.2e-10  Score=94.62  Aligned_cols=265  Identities=9%  Similarity=0.070  Sum_probs=161.3

Q ss_pred             cCCCceeeeccCcCCcEEEEEecCC--EEEEcc----------CCCcEEEEcCCcc--eecccCC-------CCCeeEEE
Q 047325           31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGS----------DSKNIRVWKNLKE--FCGFKAS-------SGLVKAIV   89 (368)
Q Consensus        31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~----------~dg~i~iw~~~~~--~~~~~~~-------~~~v~~~~   89 (368)
                      ....+.+.++..-..+ . ++++++  +++++.          .++.|.+||..+.  ...+...       ...-..+.
T Consensus        66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a  143 (386)
T 3sjl_D           66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  143 (386)
T ss_dssp             TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence            4456666666554555 3 666654  555544          3678999998753  2222211       12344566


Q ss_pred             Ee--CCEEEEEeC--CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           90 IS--GEKIFTGHQ--DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        90 ~~--~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      ++  |++++.+..  ++.|.++|+.+.+........                                 + . ...+...
T Consensus       144 ~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------------------------------g-~-~~~~P~g  188 (386)
T 3sjl_D          144 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------------------------------D-C-YHIFPTA  188 (386)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------------------------------S-E-EEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---------------------------------C-c-ceeecCC
Confidence            66  888888864  689999999988754333211                                 0 0 1122223


Q ss_pred             CCEEEEEeCCCcEEEEEccC-CeEEEEeecC----CCceE-EEEe-CCCCeEEEEcCCCeEEEEEcCCCCCCccccccee
Q 047325          166 CGLLYTASWDRTFKVWRISD-SKCLESVSAH----DDAVN-SVVS-SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQT  238 (368)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  238 (368)
                      .+.+++.+.||.+.+.++.+ ++.......+    ..++. ...| .++|.++..+.+|.|++.|......    .....
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~----~v~~~  264 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA----KFLPA  264 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC----EECCC
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc----eeecc
Confidence            45666777788888888865 5543222111    12221 1234 4677555566789999999875421    01111


Q ss_pred             ec----------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-
Q 047325          239 LL----------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-  297 (368)
Q Consensus       239 ~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-  297 (368)
                      +.          -.......++++++++.++....          .+.|.++|+.+.+.......++...-+.+++|++ 
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP  344 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence            10          01223345777899988877643          2579999999988887777777666788999986 


Q ss_pred             EEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          298 LVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       298 ~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      +|++. ..++.|.++|..+.  +.+.++.. .+..+.|.+++|
T Consensus       345 ~ly~tn~~~~~VsViD~~t~--k~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAESG--EELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTC--CEEEEECC-CCSSCCEEEECC
T ss_pred             EEEEEcCCCCeEEEEECCCC--cEEEEecC-CCCCceeEECCc
Confidence            66665 45899999998876  56666543 233455667666

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.2e-09  Score=91.45  Aligned_cols=191  Identities=8%  Similarity=-0.002  Sum_probs=118.4

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEccCCeEEEEeecC------CCceEEEEeCCC-Ce-EEEEc---CC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRISDSKCLESVSAH------DDAVNSVVSSSE-GL-IFTGS---AD  216 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~-l~~~~---~d  216 (368)
                      +...+..++++++++++++-..     ++.|.+||+.+++.+..+..+      ...+..+++.++ +. +++..   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            5568899999999875555433     578999999999877766532      234688999875 44 45544   67


Q ss_pred             CeEEEEEcCCCCCCccc----c-----cceeecc--------------ccccEEEEEEcCCCCEEEEecCCC-cEEEEeC
Q 047325          217 GTVKVWKREQHGKGTKH----S-----LAQTLLK--------------QECAVTALVVSSSRSIVYCGSSDG-LVNFWER  272 (368)
Q Consensus       217 g~i~i~d~~~~~~~~~~----~-----~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~  272 (368)
                      +.|.+||+..+......    .     ......+              ....+..++++|+++.|+.+..++ .+..++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            89999998754210000    0     0000000              012468899999999888887666 5555543


Q ss_pred             CC---cc----c-cce-eeeccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          273 EK---QL----S-HGG-VLKGHK--LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       273 ~~---~~----~-~~~-~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      ..   ..    . ... ...++.  ..-++++++|.++++...++.|.+||...+....+... .+...+++++|.+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTTSC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCCCc
Confidence            21   00    0 000 111121  12367788899999998999999999834422222221 2345689999999988


Q ss_pred             eee
Q 047325          342 SSS  344 (368)
Q Consensus       342 ~~~  344 (368)
                      +.+
T Consensus       304 l~v  306 (343)
T 2qe8_A          304 LYF  306 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.32  E-value=4.6e-13  Score=113.19  Aligned_cols=204  Identities=15%  Similarity=0.134  Sum_probs=111.4

Q ss_pred             EeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325           90 ISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL  169 (368)
Q Consensus        90 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  169 (368)
                      ..++.+++++.||.|..||..+++.......                                  ..+.+..+..++..+
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~~   52 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPAF   52 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CCE
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCEE
Confidence            4588999999999999999999886544322                                  122223334566677


Q ss_pred             EEEeCCCcEEEEEccCCeEEEEeecCCC-ceE-EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          170 YTASWDRTFKVWRISDSKCLESVSAHDD-AVN-SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      ++++.|+.|+.||..+++.+..+..+.. .+. +.....++.+++++.++.++.||.++++.      ...+..+.    
T Consensus        53 v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----  122 (369)
T 2hz6_A           53 LPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----  122 (369)
T ss_dssp             EECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------
T ss_pred             EEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----
Confidence            7778999999999999887666543321 111 11112345788888999999999987643      11221111    


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCC---CEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325          248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAG---KLVFSGSADKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~  324 (368)
                      ...++|++..+++++.|+.|+.||.++++....... +......+..+.   ..+++++.||.|+.||..++  +.+...
T Consensus       123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG--~~~W~~  199 (369)
T 2hz6_A          123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG--DVLWIQ  199 (369)
T ss_dssp             ----------EEEEEEEEEEECCCSSSSSCCCEEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC--CEEEEE
T ss_pred             cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC--cEEEEe
Confidence            134566788999999999999999998876543321 111111122221   56778899999999998776  455555


Q ss_pred             eccccCee-EEEEecCCe
Q 047325          325 TGHTGPVK-CLAVEEDRD  341 (368)
Q Consensus       325 ~~h~~~v~-~l~~~~~~~  341 (368)
                      . ...++. ...+++++.
T Consensus       200 ~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          200 N-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             E-CSSCEEEEEECTTSSC
T ss_pred             c-CCCceEEEEEecCCce
Confidence            4 334443 345556664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.31  E-value=1.1e-09  Score=100.03  Aligned_cols=284  Identities=15%  Similarity=0.151  Sum_probs=163.1

Q ss_pred             EecCCEEEEccCCCcEEEEcCCccee--cccC--CC---CCee-EEEEeCCEEEEEe------CCCeEEEEeecCCCccc
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKEFC--GFKA--SS---GLVK-AIVISGEKIFTGH------QDGKIRVWKISPKNQSV  116 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~--~~---~~v~-~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~  116 (368)
                      ++.++.++.++.|+.|..+|..+...  .+..  +.   ..+. +-...++.++.++      .+|.|..||..+++...
T Consensus       118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            34456788888999999999865422  2221  11   1111 1122356666654      37899999999998765


Q ss_pred             cccCCc-cccceeeeeccCCCCce-eEecccceeee---eecCCCEeEEEEcCCCCEEEEEeCCCc--------------
Q 047325          117 HKRAGT-LPTLKDIFKSSIKPSNY-IEVRRHRTALW---IRHSDAVSCMSLDQDCGLLYTASWDRT--------------  177 (368)
Q Consensus       117 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------  177 (368)
                      ...... .+....      ..... ..........+   .+.......++++|+..+++.+..++.              
T Consensus       198 ~~~~~~~~p~~~~------~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          198 RFYTVPGDPKLPP------EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             EEESSCCCTTSCC------CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             EecccCCCccccc------ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            543211 000000      00000 00000000000   012222346788898889999887763              


Q ss_pred             -----EEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce--
Q 047325          178 -----FKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ--  237 (368)
Q Consensus       178 -----i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  237 (368)
                           |..+|..+|+.+-.++.  |.       .++.......+|    .++.++.+|.++++|.++++.........  
T Consensus       272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  351 (689)
T 1yiq_A          272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS  351 (689)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence                 99999999999887764  21       111111211234    68889999999999998775321100000  


Q ss_pred             ---e-----------------eccccc-----------cEEEEEEcCCCCEEEEecC-----------------------
Q 047325          238 ---T-----------------LLKQEC-----------AVTALVVSSSRSIVYCGSS-----------------------  263 (368)
Q Consensus       238 ---~-----------------~~~~~~-----------~i~~~~~~~~~~~l~~~~~-----------------------  263 (368)
                         .                 ......           .-..++++|+..++++...                       
T Consensus       352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence               0                 000000           0112678888777776522                       


Q ss_pred             ----------------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325          264 ----------------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL  321 (368)
Q Consensus       264 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  321 (368)
                                            +|.|+.||+.+++.......+....--.+...+.+++.|+.||.|+.||.+++  +.+
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG--~~l  509 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG--EKL  509 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEE
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCC--ccc
Confidence                                  37799999998877644433222222356678889999999999999999887  667


Q ss_pred             EeeeccccC-eeEEEEecCCee
Q 047325          322 SVLTGHTGP-VKCLAVEEDRDS  342 (368)
Q Consensus       322 ~~~~~h~~~-v~~l~~~~~~~~  342 (368)
                      .++....+. -.-+.|..+|+.
T Consensus       510 w~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          510 WEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEECSSCCCSCCEEEEETTEE
T ss_pred             eeeeCCCCcccCceEEEECCEE
Confidence            666544322 244677788874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=3.9e-09  Score=96.17  Aligned_cols=288  Identities=14%  Similarity=0.068  Sum_probs=165.8

Q ss_pred             EecCCEEEEccCCCcEEEEcCCcc--eecccCC-C----CCe-eEEEEeCCEEEEEeC------CCeEEEEeecCCCccc
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKE--FCGFKAS-S----GLV-KAIVISGEKIFTGHQ------DGKIRVWKISPKNQSV  116 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~-~----~~v-~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~  116 (368)
                      ++.++.++.++.|+.|..+|..+.  +-.+..+ .    ..+ ......++.++.++.      +|.|+.+|..+++...
T Consensus       125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             eEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            344567888899999999998643  2233322 1    112 122234677777664      7999999999998766


Q ss_pred             cccCCccccceeeeeccCCCCceeEecc--cceeeeeecCCCEeEEEEcCCCCEEEEEeCCC------------------
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRR--HRTALWIRHSDAVSCMSLDQDCGLLYTASWDR------------------  176 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------  176 (368)
                      ..................  ........  .......+.......++++|++.+++.+..++                  
T Consensus       205 ~~~~~~~~~~~~~~~~~~--~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESM--KRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEESSCCCTTSCCSSHHH--HHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EeccCCCCcccccccccc--ccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence            544322110000000000  00000000  00000002233334678889888888887664                  


Q ss_pred             -cEEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce-----
Q 047325          177 -TFKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ-----  237 (368)
Q Consensus       177 -~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  237 (368)
                       .|..+|..+|+.+-.++.  |.       .....+....+|    .++.++.+|.++++|.++++.........     
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             499999999999887764  21       111122222243    68889999999999998775321111000     


Q ss_pred             eeccccccE------------------------EEEEEcCCCCEEEEecC------------------------------
Q 047325          238 TLLKQECAV------------------------TALVVSSSRSIVYCGSS------------------------------  263 (368)
Q Consensus       238 ~~~~~~~~i------------------------~~~~~~~~~~~l~~~~~------------------------------  263 (368)
                      .+.....++                        ..++++|+..++++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence            000000011                        14678888888877543                              


Q ss_pred             -------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-c
Q 047325          264 -------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-G  329 (368)
Q Consensus       264 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~  329 (368)
                                   .|.|..||+.+++.......+....-..+...+.+++.++.||.+++||..++  +.+..+.... .
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~~  520 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG--EKLWEAPTGTGV  520 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC--ceeeeeeCCCCc
Confidence                         27799999998877654433322222346678889999999999999999887  6666665332 2


Q ss_pred             CeeEEEEecCCee
Q 047325          330 PVKCLAVEEDRDS  342 (368)
Q Consensus       330 ~v~~l~~~~~~~~  342 (368)
                      .-.-+.|..+|+.
T Consensus       521 ~~~p~~y~~~G~~  533 (677)
T 1kb0_A          521 VAAPSTYMVDGRQ  533 (677)
T ss_dssp             CSCCEEEEETTEE
T ss_pred             ccCCEEEEeCCEE
Confidence            2344566778764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.26  E-value=8.4e-09  Score=87.54  Aligned_cols=229  Identities=11%  Similarity=0.123  Sum_probs=139.4

Q ss_pred             EEecCCEEEEccCCCcEEEEcCCccee--cccCC---------CCCe-eEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           50 LAASKDLLYTGSDSKNIRVWKNLKEFC--GFKAS---------SGLV-KAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        50 ~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~---------~~~v-~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      ....++.+++++.++.|..+|..+...  .+...         ...+ ..+...++.++.++.++.|..+|..+++....
T Consensus        49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            334577888888899999999864322  22221         1222 34455688999999999999999998876544


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD  197 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (368)
                      .......                            ...+    ...  +..+++++.++.|..+|..+++.+........
T Consensus       129 ~~~~~~~----------------------------~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          129 TKVAGEA----------------------------LSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             EECSSCC----------------------------CSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             EeCCCce----------------------------EcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            3321100                            1111    111  34788888899999999999998877764322


Q ss_pred             ce-----EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcC--CCCEEEEecCCCcEEE
Q 047325          198 AV-----NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSS--SRSIVYCGSSDGLVNF  269 (368)
Q Consensus       198 ~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~dg~i~i  269 (368)
                      ..     ...... ++.+++++.++.+..+|.+++............... ...+..+...|  .+..++.++.++.+..
T Consensus       175 ~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          175 SLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             ----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             ceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            11     111111 457888889999999999876431111100000000 00000011111  2467778888999999


Q ss_pred             EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      +|.++++.......   ........++..++.++.++.|..+|..++
T Consensus       254 ~d~~tG~~~w~~~~---~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          254 LDLRSGQIMWKREL---GSVNDFIVDGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             EETTTCCEEEEECC---CCEEEEEEETTEEEEEETTCCEEEEETTTC
T ss_pred             EECCCCcEEeeccC---CCCCCceEECCEEEEEcCCCeEEEEECCCC
Confidence            99988766533221   123344556888888899999999998776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=4e-09  Score=89.64  Aligned_cols=228  Identities=10%  Similarity=0.024  Sum_probs=135.4

Q ss_pred             CcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceee
Q 047325           64 KNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDI  129 (368)
Q Consensus        64 g~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  129 (368)
                      +.|.+.|..+.  +..+..-..+  .+.++  +++++.+.          .++.|.++|..+.+.............   
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~---  173 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF---  173 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC---
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc---
Confidence            79999998753  3333333334  67777  77777765          467899999998875443322100000   


Q ss_pred             eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCC-------ceE
Q 047325          130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDD-------AVN  200 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-------~v~  200 (368)
                                            ........+.++||+++++++..  ++.|.+.|+.+++.+..+.....       .-.
T Consensus       174 ----------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~  231 (426)
T 3c75_H          174 ----------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV  231 (426)
T ss_dssp             ----------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             ----------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcE
Confidence                                  00122345788899988888764  57889999988887776653211       000


Q ss_pred             EEEe-------------------------------------CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec--
Q 047325          201 SVVS-------------------------------------SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL--  240 (368)
Q Consensus       201 ~~~~-------------------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--  240 (368)
                      .+.+                                     .+++ .++.....+.+.+.|......    .....+.  
T Consensus       232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~----~v~~~~~~~  307 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA----TFRAPIEAL  307 (426)
T ss_dssp             EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE----EECCCEESS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce----EEeeeeeec
Confidence            0122                                     2222 222223344455555432210    0000000  


Q ss_pred             --------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEE
Q 047325          241 --------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFS  301 (368)
Q Consensus       241 --------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  301 (368)
                              ........++++|+++.+++...          ++.|.++|..+.+.......+....-+.+++|++ ++++
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv  387 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA  387 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence                    00111123688999887777642          3579999999987776665555555678899998 8888


Q ss_pred             ee-CCCeEEEEecCCCceeeeEee
Q 047325          302 GS-ADKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       302 ~~-~dg~i~iw~~~~~~~~~~~~~  324 (368)
                      .. .++.|.++|..+.  +.+.++
T Consensus       388 ~n~~s~~VsVID~~t~--kvv~tI  409 (426)
T 3c75_H          388 LSAGTQTLHIYDAATG--EELRSV  409 (426)
T ss_dssp             EETTTTEEEEEETTTC--CEEEEE
T ss_pred             EcCCCCeEEEEECCCC--CEEEEe
Confidence            87 5999999999887  556665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.22  E-value=2.3e-10  Score=95.22  Aligned_cols=239  Identities=14%  Similarity=0.111  Sum_probs=140.7

Q ss_pred             EEec-CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325           50 LAAS-KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT  125 (368)
Q Consensus        50 ~~~~-~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  125 (368)
                      ...+ ...++.++.++.|..|| .+.  ...+..+...+.++... +..|+.++.+  |..+|. +++........    
T Consensus        25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~----   96 (330)
T 3hxj_A           25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTK----   96 (330)
T ss_dssp             CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred             ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECC----
Confidence            4443 44777888888899999 433  22233333445666665 6677777665  777775 44433222211    


Q ss_pred             ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325          126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS  205 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  205 (368)
                                                  ........+.  +..+..++.++.|..+|.. ++.......+...+.++...
T Consensus        97 ----------------------------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~  145 (330)
T 3hxj_A           97 ----------------------------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS  145 (330)
T ss_dssp             --------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred             ----------------------------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc
Confidence                                        0111112222  4567888888999999988 77777766666666777777


Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc
Q 047325          206 SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH  285 (368)
Q Consensus       206 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  285 (368)
                      +++.++.++.++.|..+|.. +.      ...........+.++...+++.+.+ ++  +.|..+| .++..... ....
T Consensus       146 ~~g~l~vgt~~~~l~~~d~~-g~------~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~-~~~~  213 (330)
T 3hxj_A          146 EDGTIYVGSNDNYLYAINPD-GT------EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN-FYAG  213 (330)
T ss_dssp             TTSCEEEECTTSEEEEECTT-SC------EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE-ECCS
T ss_pred             CCCEEEEEcCCCEEEEECCC-CC------EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE-EccC
Confidence            78888888989999999987 32      1222222334456666777776554 44  7799999 55443322 2222


Q ss_pred             ceEEEEEEeCCC-EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          286 KLAVLCLAAAGK-LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       286 ~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                      ...+.++..+.+ .|..++.++.|..++...   ..+..+......+.++.+.+++.+
T Consensus       214 ~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g---~~~~~~~~~~~~~~~~~~~~~g~l  268 (330)
T 3hxj_A          214 YWTVTRPAISEDGTIYVTSLDGHLYAINPDG---TEKWRFKTGKRIESSPVIGNTDTI  268 (330)
T ss_dssp             SCCCSCCEECTTSCEEEEETTTEEEEECTTS---CEEEEEECSSCCCSCCEECTTSCE
T ss_pred             CcceeceEECCCCeEEEEcCCCeEEEECCCC---CEeEEeeCCCCccccceEcCCCeE
Confidence            233334444432 667777788888886433   333444434444455566656653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=1.4e-09  Score=99.81  Aligned_cols=242  Identities=15%  Similarity=0.109  Sum_probs=140.0

Q ss_pred             CcCCcEEEEEecCC--EEE-----EccCCCcEEEEcCCccee-cccCCCCCeeEEEEe-CCEEEEEeCCCe---------
Q 047325           42 REEGHIYSLAASKD--LLY-----TGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS-GEKIFTGHQDGK---------  103 (368)
Q Consensus        42 ~h~~~i~~~~~~~~--~l~-----s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~-~~~l~s~~~dg~---------  103 (368)
                      +|...+..++|+++  +||     .|+.+.+|++||+.+... ....+......++|+ ++.|+.++.+..         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence            35556788888766  666     344456899999875432 111111112344555 778888877743         


Q ss_pred             ----EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeC----
Q 047325          104 ----IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASW----  174 (368)
Q Consensus       104 ----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----  174 (368)
                          |++|++.+.........                            .... |...+..+.++||+++|+....    
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~----------------------------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  257 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVF----------------------------GAIPAQHHRYVGATVTEDDRFLLISAANSTS  257 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEE----------------------------SCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred             CCcEEEEEECCCCcccceEEE----------------------------ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence                88888776542111000                            0011 2345678999999998765442    


Q ss_pred             CCcEEEEEccCCe-EEEEeecCCCceEEEEeCCCC--eEEEEcCC---CeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          175 DRTFKVWRISDSK-CLESVSAHDDAVNSVVSSSEG--LIFTGSAD---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       175 d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      ++.|.++|+.++. ....+..+....... +.+++  +++....+   +.|..+|+.....    .....+..+...+. 
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~-  331 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL-  331 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE-
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE-
Confidence            2589999997763 344555555555554 44444  44444443   6899999876522    01123344444444 


Q ss_pred             EEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCC----CeEEEEecCCCcee
Q 047325          249 LVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSAD----KTICVWRRDGAIHT  319 (368)
Q Consensus       249 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d----g~i~iw~~~~~~~~  319 (368)
                       .|+++++.|+....++   .|++||+..+... .........+..+  +++++.|+....+    +.|+.||+.++...
T Consensus       332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~-~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR-EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEEECTTSCEEE-EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             -EEEEECCEEEEEEEECCeeEEEEEECCCCeeE-EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence             7888888877765544   6889998754332 2222233344444  3566655554444    78999988765433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.20  E-value=2e-09  Score=98.81  Aligned_cols=221  Identities=13%  Similarity=0.121  Sum_probs=133.5

Q ss_pred             CCCCeeEEEEe--CCEEEEE-----eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325           81 SSGLVKAIVIS--GEKIFTG-----HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH  153 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (368)
                      |...+..++|+  |++|+-+     +.+..|++||+.+++.....                               +  .
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-------------------------------~--~  173 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-------------------------------L--K  173 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-------------------------------E--E
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-------------------------------c--C
Confidence            55577888888  6777633     23357999999988632110                               0  1


Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCc-------------EEEEEccCCe----EEEEeec-CCCceEEEEeCCCC-eE-EEE
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRT-------------FKVWRISDSK----CLESVSA-HDDAVNSVVSSSEG-LI-FTG  213 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~-~l-~~~  213 (368)
                      ......++|+ |++.|+.+..+..             |++|++.++.    .+..... +......+.++|++ +| ++.
T Consensus       174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            1112467899 9999988887743             9999987754    3333333 44557789999999 44 333


Q ss_pred             c---CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCC---CcEEEEeCCCccc-cceeeecc
Q 047325          214 S---ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSD---GLVNFWEREKQLS-HGGVLKGH  285 (368)
Q Consensus       214 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~-~~~~~~~~  285 (368)
                      .   .+..|+++|+.....     ....+..+....... +++++..|+ ....+   +.|..+|+.++.. ....+..|
T Consensus       253 ~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~  326 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE  326 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             ccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence            3   235899999876431     123333344444443 555555544 44433   5799999887543 11233333


Q ss_pred             ceEEEEEEeCCCEEEEeeC-CC--eEEEEecCCCceeeeEeee-ccccCeeEEEEecCCeeee
Q 047325          286 KLAVLCLAAAGKLVFSGSA-DK--TICVWRRDGAIHTCLSVLT-GHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       286 ~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~  344 (368)
                      ...+..++++++.|+.... ++  .|++|+++...   ...+. .....+..+.+++++..+.
T Consensus       327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSCEE
T ss_pred             CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCEEE
Confidence            3333389999888776655 44  68888877542   22222 2344567777787776544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=1.9e-09  Score=98.24  Aligned_cols=194  Identities=7%  Similarity=0.060  Sum_probs=116.9

Q ss_pred             cCCEEEEccCCCcEEEEcCCccee--cccCCCC-----------CeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG-----------LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++.++.++.++.|.-+|..+...  .+.....           ....+.+.++.++.++.|+.|..+|..+++......
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            466677777788899898764432  2221110           113455678899999999999999999998765544


Q ss_pred             CC-ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEe
Q 047325          120 AG-TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESV  192 (368)
Q Consensus       120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  192 (368)
                      .. ......                       .....++    +  .+..+++++.      ++.|+.+|..+|+.+-.+
T Consensus       156 ~~~~~~~~~-----------------------~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          156 TFEGQKGSL-----------------------TITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTTTCCSSC-----------------------BCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCcCcCcCc-----------------------ccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            32 100000                       0011111    1  1335555543      689999999999998777


Q ss_pred             ecCCCc--------------------------------eEEEEeCCCC-eEEEEcCCC-------------------eEE
Q 047325          193 SAHDDA--------------------------------VNSVVSSSEG-LIFTGSADG-------------------TVK  220 (368)
Q Consensus       193 ~~~~~~--------------------------------v~~~~~~~~~-~l~~~~~dg-------------------~i~  220 (368)
                      ......                                ...+++.+++ .++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            542211                                1235666666 777776654                   588


Q ss_pred             EEEcCCCCCCcccccceeeccc-------cccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCccccc
Q 047325          221 VWKREQHGKGTKHSLAQTLLKQ-------ECAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       221 i~d~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      .+|.+++......    ....+       ......+....+|   +.++.++.+|.++++|.++++.+.
T Consensus       287 AlD~~TG~~~W~~----~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          287 ALDPDTGKYKWHY----QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             EECTTTCCEEEEE----ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEE----ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence            8998876432111    11111       1112223333467   689999999999999999877653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=6.5e-12  Score=106.12  Aligned_cols=184  Identities=11%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             EecCCEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEE-e-CCEEEEEeCCCeEEEEeecCCCccccccCCccccc
Q 047325           51 AASKDLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVI-S-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL  126 (368)
Q Consensus        51 ~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  126 (368)
                      +..++.+++++.||.|+.||..+..  ..+..  +.+.+..+ . +..+++++.||.|+.||.++++.............
T Consensus         6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            3467789999999999999987543  23333  33433322 2 55777778999999999988875443322100000


Q ss_pred             eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC
Q 047325          127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS  206 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  206 (368)
                                                ...++.    . ++..+++++.|+.|+.||..+|+.+..+..+..    ..++|
T Consensus        84 --------------------------~~sp~~----~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p  128 (369)
T 2hz6_A           84 --------------------------QASPCR----S-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP  128 (369)
T ss_dssp             --------------------------TTCSCC----------CCCCEEEEEEEEECCC----------------------
T ss_pred             --------------------------ccCceE----e-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc
Confidence                                      011111    1 234677788899999999999998877765432    23445


Q ss_pred             CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCccccc
Q 047325          207 EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       207 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      ++ .+++++.|+.|+.||.+++.......    .  .  ......+.++.   ..+++++.||.++.||.++++...
T Consensus       129 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~--~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          129 STSLLYLGRTEYTITMYDTKTRELRWNAT----Y--F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             ----EEEEEEEEEEECCCSSSSSCCCEEE----E--E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCCEEEeEe----c--c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence            55 88889999999999998764322111    1  0  11222333322   567778899999999999877653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.16  E-value=5.4e-09  Score=95.46  Aligned_cols=193  Identities=8%  Similarity=0.064  Sum_probs=115.2

Q ss_pred             cCCEEEEccCCCcEEEEcCCccee--cccCCCC----------C-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG----------L-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~----------~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++.+++++.++.|.-+|..+...  .+.....          . -..+.+.+..++.++.|+.|..+|..+++......
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            466777788888999999764322  2222111          0 12345568899999999999999999998765543


Q ss_pred             CC-ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------CCCcEEEEEccCCeEEEEe
Q 047325          120 AG-TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------WDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~  192 (368)
                      .. .....                       +.....++.    . ++ .+++++      .++.|..||..+|+.+-.+
T Consensus       149 ~~~~~~~~-----------------------~~~~~sP~v----~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          149 TRADHKRS-----------------------YTITGAPRV----V-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             CCSCTTSC-----------------------CBCCSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CcCCCCCC-----------------------ccccCCcEE----E-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            32 00000                       000111111    1 33 444443      3689999999999988776


Q ss_pred             ecCC---C----------------------------ceEEEEeCCCC-eEEEEcCCCe-------------------EEE
Q 047325          193 SAHD---D----------------------------AVNSVVSSSEG-LIFTGSADGT-------------------VKV  221 (368)
Q Consensus       193 ~~~~---~----------------------------~v~~~~~~~~~-~l~~~~~dg~-------------------i~i  221 (368)
                      ....   .                            .-..+++.|++ .++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            5210   0                            01145666655 8888877764                   999


Q ss_pred             EEcCCCCCCcccccceeeccc-------cccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCcccc
Q 047325          222 WKREQHGKGTKHSLAQTLLKQ-------ECAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +|.++++.....+    ...+       ...+.......+++   .++.++.+|.++++|.++++.+
T Consensus       280 lD~~TG~~~W~~~----~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          280 VNADTGEYVWHYQ----TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EETTTCCEEEEEE----SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEccCCceeEeee----cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            9998874321111    1111       11222222223554   7889999999999999887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=7.8e-09  Score=90.11  Aligned_cols=226  Identities=11%  Similarity=0.097  Sum_probs=143.4

Q ss_pred             eEEEE-----eCCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325           86 KAIVI-----SGEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus        86 ~~~~~-----~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                      ..+.+     +|++++.... +++|.+.|+.+.+........                               .......
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg  138 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHG  138 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEE
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcc
Confidence            45555     4667766655 567999999987654322211                               2244667


Q ss_pred             EEE-c-CCCCEEEEEe------------------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCC-
Q 047325          160 MSL-D-QDCGLLYTAS------------------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADG-  217 (368)
Q Consensus       160 ~~~-~-~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-  217 (368)
                      +++ . |+++++++++                  .++.+.+.|..+.+....+.-.. ....++.+|+| ++++.+.+. 
T Consensus       139 ~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se  217 (595)
T 1fwx_A          139 LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE  217 (595)
T ss_dssp             EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT
T ss_pred             eeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcc
Confidence            777 4 8899988885                  24579999999999888887533 34667788988 666666442 


Q ss_pred             -------------------------------------eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          218 -------------------------------------TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       218 -------------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                                                           .|.+.|.+...    .........-.....++.++|||+++++
T Consensus       218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEecCCCceEEEEcCCCCEEEE
Confidence                                                 24555554310    0010111112234567899999997766


Q ss_pred             ec-CCCcEEEEeCCCccc------------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC--------cee
Q 047325          261 GS-SDGLVNFWEREKQLS------------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA--------IHT  319 (368)
Q Consensus       261 ~~-~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~  319 (368)
                      ++ .+.+|.++|+.+.+.            ......+....-++|+++|...++...|+.|.+||++..        ..+
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~  373 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP  373 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence            54 678999999986531            112222333444788899954556667999999998762        135


Q ss_pred             eeEeeeccccCe-----eEEEEecCCeeeecCC
Q 047325          320 CLSVLTGHTGPV-----KCLAVEEDRDSSSSTS  347 (368)
Q Consensus       320 ~~~~~~~h~~~v-----~~l~~~~~~~~~~~~~  347 (368)
                      .+..+..|..+-     .++.++|||+++.+++
T Consensus       374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             eEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            666666665542     2335689999876654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.10  E-value=1.3e-08  Score=86.46  Aligned_cols=219  Identities=7%  Similarity=-0.025  Sum_probs=131.2

Q ss_pred             CCEEEEEeCC-----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC
Q 047325           92 GEKIFTGHQD-----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC  166 (368)
Q Consensus        92 ~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  166 (368)
                      ++.+++....     +.|.++|..+.+.......+                                ..+  .+.++||+
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------------------------------~~P--gia~SpDg  129 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------------------------------FLP--HPVAAEDG  129 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------------------------------SSC--EEEECTTS
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------------------------------CCC--ceEECCCC
Confidence            5666665543     69999999888754433321                                223  79999999


Q ss_pred             CEEEEEe----------CCCcEEEEEccCCeEEEEeecC-------CCceEEEEeCCCC-eEEEEcC--CCeEEEEEcCC
Q 047325          167 GLLYTAS----------WDRTFKVWRISDSKCLESVSAH-------DDAVNSVVSSSEG-LIFTGSA--DGTVKVWKREQ  226 (368)
Q Consensus       167 ~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l~~~~~--dg~i~i~d~~~  226 (368)
                      ++++++.          .++.|.++|..+++.+..+.-.       ......+.++|++ +++++..  ++.|.+.|+.+
T Consensus       130 k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          130 SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence            9888886          3678999999999998887632       1234578999999 7776653  68899999987


Q ss_pred             CCCCccccccee--ec--c--------ccc----------cEE----------------EEEEcCCCCEEEEecCCCcEE
Q 047325          227 HGKGTKHSLAQT--LL--K--------QEC----------AVT----------------ALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       227 ~~~~~~~~~~~~--~~--~--------~~~----------~i~----------------~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ............  ..  +        ..+          .+.                .+.+.+++..++.....+.+.
T Consensus       210 ~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~  289 (426)
T 3c75_H          210 KTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF  289 (426)
T ss_dssp             TEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred             CeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence            532111110000  00  0        000          000                112344444444444556666


Q ss_pred             EEeCCCccccc-ee------------eeccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeee
Q 047325          269 FWEREKQLSHG-GV------------LKGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       269 i~d~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +.|........ ..            ........+.++++++.+++...          ++.|.+.|..+.  +.+.++.
T Consensus       290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~  367 (426)
T 3c75_H          290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIE  367 (426)
T ss_dssp             EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEE
T ss_pred             EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--eEEEEEE
Confidence            66664321100 00            00111112578888887776642          357999988776  5666664


Q ss_pred             ccccCeeEEEEecCCe-eeecCC
Q 047325          326 GHTGPVKCLAVEEDRD-SSSSTS  347 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~-~~~~~~  347 (368)
                      . ......++|+||++ .+.++.
T Consensus       368 v-g~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          368 L-GHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             E-EEEECEEEECCSSSCEEEEEE
T ss_pred             C-CCCcCeEEEccCCCEEEEEEc
Confidence            2 23588999999998 555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.06  E-value=4.8e-08  Score=81.70  Aligned_cols=240  Identities=9%  Similarity=0.047  Sum_probs=138.7

Q ss_pred             CcEEEEEecC--CEEEEcc--CCCcEEEEcCC-cceecc-------cCCCCCeeEEEEe-CCEEEEEeC------CCeEE
Q 047325           45 GHIYSLAASK--DLLYTGS--DSKNIRVWKNL-KEFCGF-------KASSGLVKAIVIS-GEKIFTGHQ------DGKIR  105 (368)
Q Consensus        45 ~~i~~~~~~~--~~l~s~~--~dg~i~iw~~~-~~~~~~-------~~~~~~v~~~~~~-~~~l~s~~~------dg~i~  105 (368)
                      .....+++++  +++++..  .++.++||.+. ..+..+       ..+...+..++++ ...|+....      ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            6778888874  4666643  23435555442 222222       2345678999998 345555543      57899


Q ss_pred             EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-e---CCCcEEEE
Q 047325          106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-S---WDRTFKVW  181 (368)
Q Consensus       106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~iw  181 (368)
                      +||+.+++...........                          ..+...+..+++++++..++.+ .   .++.|.+|
T Consensus        97 ~~d~~tg~~~~~~~~~~~~--------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPI--------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEETTTTEEEEEEECCTTT--------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEECCCCeEEEEEECChhh--------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            9999877633222111000                          0033456789999865555444 4   57899999


Q ss_pred             EccCCeEEEEeecCC-----------------------------CceEEEEeCCCC-eEEEEcCCC-eEEEEEcCCCC--
Q 047325          182 RISDSKCLESVSAHD-----------------------------DAVNSVVSSSEG-LIFTGSADG-TVKVWKREQHG--  228 (368)
Q Consensus       182 d~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~--  228 (368)
                      |+.+++....+..|.                             ..+..++++|++ .|+.+..++ .+..++.....  
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            998887666553321                             235789999999 677666555 55555542110  


Q ss_pred             CCcccccce--eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cc--eEEEEEEeCCCEEEEee
Q 047325          229 KGTKHSLAQ--TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HK--LAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       229 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~  303 (368)
                      .........  ...++......++++++++++++...++.|.+||.+++... ..... +.  ..-+++.+++.++++.+
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECCCCcEEEEeC
Confidence            000000000  11122334567899999999999999999999998443321 12211 11  22355556777777766


Q ss_pred             CCCeEEEE
Q 047325          304 ADKTICVW  311 (368)
Q Consensus       304 ~dg~i~iw  311 (368)
                      ..+.+.+|
T Consensus       310 ~~~~~~~f  317 (343)
T 2qe8_A          310 QLHHSAPL  317 (343)
T ss_dssp             CGGGSGGG
T ss_pred             cccccccc
Confidence            55554444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=5.7e-07  Score=72.24  Aligned_cols=217  Identities=7%  Similarity=0.068  Sum_probs=129.5

Q ss_pred             CCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325           83 GLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC  159 (368)
Q Consensus        83 ~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (368)
                      .....++++  ++.|+.+. .++.|..++++.........                                ........
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------------------------------~~~~~p~~   83 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGSPEG   83 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCCEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--------------------------------CCCCCccE
Confidence            346688887  45555544 57889999987543211000                                01245678


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEcC---CCeEEEEEcCCCCCCcccc
Q 047325          160 MSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGSA---DGTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       160 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~  234 (368)
                      +++++++..|+.+. ..+.|.++++..................+++.|+ +.|+.+..   .+.|..+++.....    .
T Consensus        84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~  159 (267)
T 1npe_A           84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----R  159 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----E
T ss_pred             EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----E
Confidence            99999766555554 5678999998643322222222245688999995 55554443   46888888764311    1


Q ss_pred             cceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee-CCCeEEEEe
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS-ADKTICVWR  312 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~  312 (368)
                      .  ...........++++|++..|+ +-...+.|.++|....... .....-.. -..+++++..|+.+. .++.|.++|
T Consensus       160 ~--~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~-P~gi~~d~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 I--LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             E--EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCS-EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             E--EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCCC-ceEEEEeCCEEEEEECCCCeEEEEe
Confidence            1  1112234578899999876554 4556688999998754322 12221111 134455556555554 568899998


Q ss_pred             cCCCceeeeEeeeccc-cCeeEEEEecCCe
Q 047325          313 RDGAIHTCLSVLTGHT-GPVKCLAVEEDRD  341 (368)
Q Consensus       313 ~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~  341 (368)
                      .+++  +.+..+.... .....+++.|++.
T Consensus       236 ~~~g--~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          236 LAIS--KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTT--EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCC--CceEEEccccccccceeeecCccC
Confidence            8766  4555554332 2477888888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=1.8e-07  Score=78.78  Aligned_cols=183  Identities=8%  Similarity=0.038  Sum_probs=117.7

Q ss_pred             eEEEEcCCCCEEEEEeCC------CcEEEEEccCCeEEEEeecCCC---ceEEEEeCCCC-eEEEEc-------------
Q 047325          158 SCMSLDQDCGLLYTASWD------RTFKVWRISDSKCLESVSAHDD---AVNSVVSSSEG-LIFTGS-------------  214 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~-------------  214 (368)
                      ..+...|++ .++++..+      +.|.++|..+++.+.++.....   .-..+.|+|++ .+++..             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            456778998 66666655      7899999999999998873322   23457789988 666653             


Q ss_pred             ------CCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEE--cCCCCEEEEecC------CCcEEEEeCCCcccc
Q 047325          215 ------ADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVV--SSSRSIVYCGSS------DGLVNFWEREKQLSH  278 (368)
Q Consensus       215 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~  278 (368)
                            .+.+|.+||+...      +....+..  .......+.|  +|++++++++++      +++|.+|....+...
T Consensus       220 ~~~~~~~~d~V~v~D~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~  293 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN  293 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred             hhhhhccCCEEEEEECCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence                  3789999999864      22333322  2234455555  999998888774      557776554322100


Q ss_pred             c-e-----------eee---------ccceEEEEEEeCCCEEEEeeC-CCeEEEEecC-CCceeeeEeeeccc-------
Q 047325          279 G-G-----------VLK---------GHKLAVLCLAAAGKLVFSGSA-DKTICVWRRD-GAIHTCLSVLTGHT-------  328 (368)
Q Consensus       279 ~-~-----------~~~---------~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~-~~~~~~~~~~~~h~-------  328 (368)
                      . .           .+.         +....-+.+++|+++|+++.. .+.|.+||+. ....+.+..+....       
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~  373 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADH  373 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence            0 0           000         111233668899998887765 7899999985 33344554443221       


Q ss_pred             -------cCeeEEEEecCCeeeecCC
Q 047325          329 -------GPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       329 -------~~v~~l~~~~~~~~~~~~~  347 (368)
                             +....++++|||+.+..++
T Consensus       374 ~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          374 PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccCCCCCCEEEEcCCCCEEEEEc
Confidence                   1368899999999776655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.02  E-value=2.1e-08  Score=83.78  Aligned_cols=236  Identities=9%  Similarity=0.001  Sum_probs=133.8

Q ss_pred             cEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceeee
Q 047325           65 NIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        65 ~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      +|.+.|..+.  +..+..-..+  .+.++  +++++++.          .++.|.+||+.+.+.......+.....    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~----  120 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF----  120 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence            7889997643  3344333344  57776  77777775          478999999999876544332100000    


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEE--EEccCCeEEEEeecCCCc-e------
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKV--WRISDSKCLESVSAHDDA-V------  199 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~-v------  199 (368)
                                         .  .......++++||+++++++..  +..+.+  +|+.+   +..+...... +      
T Consensus       121 -------------------~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~  176 (368)
T 1mda_H          121 -------------------S--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             -------------------C--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETT
T ss_pred             -------------------c--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCe
Confidence                               0  0122346899999999998875  356888  88866   3333211000 0      


Q ss_pred             EEEEeCCCC--------------------------------------eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          200 NSVVSSSEG--------------------------------------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       200 ~~~~~~~~~--------------------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                      .-+..++++                                      .++..+. +.+.+.|......    .....+..
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~  251 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDG  251 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCS
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEe
Confidence            001111111                                      2222222 4455555432110    00000000


Q ss_pred             ----------ccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEE
Q 047325          242 ----------QECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFS  301 (368)
Q Consensus       242 ----------~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  301 (368)
                                .......++++|+++.++.+..         ++.+.++|+.+.+.......+....-+.+++|++ ++++
T Consensus       252 ~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred             ccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEE
Confidence                      0111112679999998886543         2356799999887765555555555578889987 5666


Q ss_pred             ee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          302 GS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       302 ~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      .. .++.|.++|+.+.  +.+.++.... ....+++.+
T Consensus       332 ~~~~~~~VsVID~~t~--kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          332 NSAGTEVLDIYDAASD--QDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EETTTTEEEEEESSSC--EEEEECCCCS-CCCEEECCC
T ss_pred             ccCCCCeEEEEECCCC--cEEEEEECCC-CCCEEEeec
Confidence            66 5999999999886  6677776443 345666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.98  E-value=4.4e-06  Score=78.12  Aligned_cols=278  Identities=10%  Similarity=0.168  Sum_probs=162.3

Q ss_pred             CCcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc--------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCC
Q 047325           44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK--------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~--------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      ...|.++..+.+ .|..|+.++-+..||..+. ...+.        .....|.++..+ ...|..|+.+ -|.+|+..++
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~  292 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD  292 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence            456788877533 5555654444888887643 22222        124568898887 5567777766 5778887655


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      .............                         .-....|.++...++|. |..|+.++-|..++..+++.....
T Consensus       293 ~~~~~~~~~~~~~-------------------------~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~  346 (795)
T 4a2l_A          293 SFASYSSNPVENG-------------------------SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIR  346 (795)
T ss_dssp             EEEEECCCTTSTT-------------------------SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEEC
T ss_pred             eEEEEecCCCCCC-------------------------CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEc
Confidence            4221111000000                         00346799999998876 566777778999987655432211


Q ss_pred             e------cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce-e-e-ccccccEEEEEEcCCCCEEEEecC
Q 047325          193 S------AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ-T-L-LKQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       193 ~------~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-~-~~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                      .      -....|.++...+++.|..|+.++.|..||.....- ....... . . ......|.++...++++.|..|+.
T Consensus       347 ~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~  425 (795)
T 4a2l_A          347 NIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH  425 (795)
T ss_dssp             CCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence            1      124568999999889888899888899999865311 0000000 0 0 012356899999888885777777


Q ss_pred             CCcEEEEeCCCccccceee---eccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEee----eccccCeeEEE
Q 047325          264 DGLVNFWEREKQLSHGGVL---KGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVL----TGHTGPVKCLA  335 (368)
Q Consensus       264 dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~h~~~v~~l~  335 (368)
                      ++-|..||.+++.......   ......+.++..+ ...|..|+.+ -|.+|+..+.........    .-....|.++.
T Consensus       426 ~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  504 (795)
T 4a2l_A          426 AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF  504 (795)
T ss_dssp             TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred             cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence            7779999987653221110   0123456666664 2334445554 488888766532222111    11235688998


Q ss_pred             EecCCeeeecCCcce
Q 047325          336 VEEDRDSSSSTSSCA  350 (368)
Q Consensus       336 ~~~~~~~~~~~~~~~  350 (368)
                      ..++|.+.++..+..
T Consensus       505 ~d~~g~lWigt~~Gl  519 (795)
T 4a2l_A          505 RDSHKRLWIGGEEGL  519 (795)
T ss_dssp             ECTTCCEEEEESSCE
T ss_pred             ECCCCCEEEEeCCce
Confidence            888887544333333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=2.2e-07  Score=73.43  Aligned_cols=187  Identities=8%  Similarity=-0.017  Sum_probs=116.2

Q ss_pred             CEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCC-ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325          156 AVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDD-AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK  232 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  232 (368)
                      ....+.|++++.++++.+.  ++.|.++|+.+++.+..+.-... ....+++..+...++.-.++.+.++|..+..    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~----   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS----   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence            3578999998644444443  57999999999999988763222 2334555543355555678999999997652    


Q ss_pred             cccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-ce-----EEEEEEeCCCEEEEeeCC
Q 047325          233 HSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-KL-----AVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       233 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~~d  305 (368)
                        ....+... ..   ...++++++.++++..++.|.++|.++.+.......+. ..     .-+.+. ++.+.+....+
T Consensus        98 --v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A           98 --NIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             --EEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             --EEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence              23333211 11   12345577877777788999999998866554433221 11     123333 66555555567


Q ss_pred             CeEEEEecCCCceeeeEeeecc-------------ccCeeEEEEecCCee-eecCCcceEEEE
Q 047325          306 KTICVWRRDGAIHTCLSVLTGH-------------TGPVKCLAVEEDRDS-SSSTSSCAQRWI  354 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~-~~~~~~~~~~w~  354 (368)
                      +.|.+-|..++  +.+..+.-.             ....+.|+|+|++.. ++++....+++.
T Consensus       172 ~~V~vID~~tg--~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          172 DCIARISAKDG--TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             SEEEEEETTTC--CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             CeEEEEECCCC--cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            89999998876  455555321             135689999999864 333334444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=8.3e-09  Score=86.22  Aligned_cols=193  Identities=5%  Similarity=-0.058  Sum_probs=113.0

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEccCCeEEEEeecCC-------CceEEEEeCCCC-eEEEEcC--CCe
Q 047325          159 CMSLDQDCGLLYTAS----------WDRTFKVWRISDSKCLESVSAHD-------DAVNSVVSSSEG-LIFTGSA--DGT  218 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~-~l~~~~~--dg~  218 (368)
                      .+.++||+++++++.          .++.|.+||+.+++.+.++..+.       .....+.++||| +++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999998886          36889999999999999987441       235678999999 7777654  467


Q ss_pred             EEE--EEcCCCCCCccccc---ceeecc---------ccccEEEEE--------------------------EcCCCCEE
Q 047325          219 VKV--WKREQHGKGTKHSL---AQTLLK---------QECAVTALV--------------------------VSSSRSIV  258 (368)
Q Consensus       219 i~i--~d~~~~~~~~~~~~---~~~~~~---------~~~~i~~~~--------------------------~~~~~~~l  258 (368)
                      +.+  +|..+.   .....   ......         ..+.+..+.                          ..+++..+
T Consensus       149 v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  887530   00000   000000         000000000                          13344444


Q ss_pred             EEecCCCcEEEEeCCCccc-ccee------------eeccceEEEEEEeCCCEEEEeeC---------CCeEEEEecCCC
Q 047325          259 YCGSSDGLVNFWEREKQLS-HGGV------------LKGHKLAVLCLAAAGKLVFSGSA---------DKTICVWRRDGA  316 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~  316 (368)
                      +..+. +.+.+.|...... ....            ........+.++++++.++.+..         ++.+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            44445 7788888754211 0000            01111122578999988887543         235669998876


Q ss_pred             ceeeeEeeeccccCeeEEEEecCCeee-ecC---CcceEEEEEeeC
Q 047325          317 IHTCLSVLTGHTGPVKCLAVEEDRDSS-SST---SSCAQRWIVYSG  358 (368)
Q Consensus       317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~-~~~---~~~~~~w~l~sg  358 (368)
                        +.+..+.... ....|+|+||++.+ .+.   ++.+.++.+.++
T Consensus       305 --~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          305 --QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             --CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             --eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence              5566665333 68899999999742 222   334554444443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.97  E-value=5e-06  Score=77.73  Aligned_cols=269  Identities=13%  Similarity=0.190  Sum_probs=161.7

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc-------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK-------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      ..|.++..+.+ .|..|+.++-|..++.... ...+.       .....|.++..+ ...|..|+.++-|..|+..++..
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence            56888888755 6777887777888876532 22221       134568899887 55788888887888898776542


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-  193 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-  193 (368)
                      .........+.                        ..-....|.++...+++..|..|+.++-|..+|..+++...... 
T Consensus       390 ~~~~~~~~~~~------------------------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          390 TSYTLQEDESA------------------------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             EEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             EEEecCCCCcc------------------------cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            21111000000                        00024578999998888757778877789999998776443221 


Q ss_pred             ---cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee----ccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          194 ---AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL----LKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       194 ---~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                         .....|.++...+++.|..|+. +.+.+||.....-    ......    ......|.++...+++++.+.. .+ -
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-G  518 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF----TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-G  518 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE----EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS-C
T ss_pred             CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE----EEccccccccccCCceEEEEEECCCCCEEEEe-CC-c
Confidence               1345789999888886666666 5588899765311    001000    1123568999999888765554 44 4


Q ss_pred             EEEEeCCCcccccee-----eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEec
Q 047325          267 VNFWEREKQLSHGGV-----LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEE  338 (368)
Q Consensus       267 i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~  338 (368)
                      +..||..+... ...     .......+.++..+  +. |..|+.. -|..||..+..........+ ....|.++...+
T Consensus       519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~  595 (795)
T 4a2l_A          519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS  595 (795)
T ss_dssp             EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECT
T ss_pred             eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECC
Confidence            88888765433 110     01223456677664  54 4445544 57888876653222211111 134588888888


Q ss_pred             CCeeeecCC
Q 047325          339 DRDSSSSTS  347 (368)
Q Consensus       339 ~~~~~~~~~  347 (368)
                      +|.+-+++.
T Consensus       596 ~g~lWi~t~  604 (795)
T 4a2l_A          596 FGRLWLSTN  604 (795)
T ss_dssp             TSCEEEEET
T ss_pred             CCCEEEEcC
Confidence            887554444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=2.5e-07  Score=84.27  Aligned_cols=282  Identities=15%  Similarity=0.149  Sum_probs=156.3

Q ss_pred             ecCCEEEEccCCCcEEEEcCCccee--cccCC----CCCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325           52 ASKDLLYTGSDSKNIRVWKNLKEFC--GFKAS----SGLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        52 ~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~----~~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~  118 (368)
                      +.++.++.++.|+.|..+|..+...  .+...    ...+. +-...++.++.+..      +|.|..+|..+++.....
T Consensus       115 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          115 LWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            3455788888899999999764422  22211    01111 11233666666654      589999999999876654


Q ss_pred             cCCc-cccceeeeeccCCCCceeE-e--ccc-ceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-----------------
Q 047325          119 RAGT-LPTLKDIFKSSIKPSNYIE-V--RRH-RTALWIRHSDAVSCMSLDQDCGLLYTASWDR-----------------  176 (368)
Q Consensus       119 ~~~~-~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------  176 (368)
                      .... .+....      ....... .  ... ..-...+.......+++.|+..+++.+..++                 
T Consensus       195 ~~~~~~p~~~~------~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          195 YTVPGDPALPY------EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             ESSCCCTTSCC------SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             cccCCCCCccc------cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            4211 000000      0000000 0  000 0000001223334578888888888887766                 


Q ss_pred             --cEEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce----
Q 047325          177 --TFKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ----  237 (368)
Q Consensus       177 --~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  237 (368)
                        .|..+|..+|+.+-.++.  |.       .+.....+..++    .++.++.+|.++++|.++++.........    
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence              399999999999887764  22       222222222244    58889999999999998764321000000    


Q ss_pred             -eec-ccccc------------------------EEEEEEcCCCCEEEEe------------------------------
Q 047325          238 -TLL-KQECA------------------------VTALVVSSSRSIVYCG------------------------------  261 (368)
Q Consensus       238 -~~~-~~~~~------------------------i~~~~~~~~~~~l~~~------------------------------  261 (368)
                       .+. ....+                        -..++++|+...++..                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence             000 00000                        0125677766655531                              


Q ss_pred             ------cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe-eEE
Q 047325          262 ------SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV-KCL  334 (368)
Q Consensus       262 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v-~~l  334 (368)
                            ..+|.|..||+.+++...............+...+.+++.|+.||.|+.||.+++  +.+..+....... .-+
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG--~~l~~~~~~~~~~~~p~  506 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG--EALWQFEAQSGIVAAPM  506 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCE
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC--hhheEecCCCCcccCce
Confidence                  1347899999998877644433332222455668889999999999999998876  5566655433211 223


Q ss_pred             EEecCCe
Q 047325          335 AVEEDRD  341 (368)
Q Consensus       335 ~~~~~~~  341 (368)
                      .+..+|+
T Consensus       507 ~~~~~G~  513 (668)
T 1kv9_A          507 TFELAGR  513 (668)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            4445555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=7.4e-07  Score=79.56  Aligned_cols=287  Identities=10%  Similarity=0.038  Sum_probs=149.6

Q ss_pred             ecCCEEEEccCCCcEEEEcCCccee--cccCCC----CCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325           52 ASKDLLYTGSDSKNIRVWKNLKEFC--GFKASS----GLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        52 ~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~----~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~  118 (368)
                      ..++.++.++.|+.+..+|..+...  .+....    ..+. +....++.++.++.      +|.|..+|..+++.....
T Consensus       113 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            3455777788889999999764422  211110    0111 11234667777765      799999999999876654


Q ss_pred             cCCccccceeeeeccCCCCcee-------EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC----------------
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYI-------EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD----------------  175 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------  175 (368)
                      ...........-........+.       ........ ..+-......+++.++...++.+..+                
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            4321110000000000000000       00000000 00000111235566666666666532                


Q ss_pred             CcEEEEEccCCeEEEEeecC--C--------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce----
Q 047325          176 RTFKVWRISDSKCLESVSAH--D--------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ----  237 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  237 (368)
                      +.|..+|..+|+.+-.++..  .        .++. +....+|    .++.++.+|.++++|.++++.........    
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence            35999999999988777632  1        1221 2222345    36778889999999988764321111000    


Q ss_pred             --eec-cccccE--------------------------EEEEEcCCCCEEEEec--------------------------
Q 047325          238 --TLL-KQECAV--------------------------TALVVSSSRSIVYCGS--------------------------  262 (368)
Q Consensus       238 --~~~-~~~~~i--------------------------~~~~~~~~~~~l~~~~--------------------------  262 (368)
                        ... ....++                          ..++++|+..+++...                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence              000 000011                          2356777777666653                          


Q ss_pred             -----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-
Q 047325          263 -----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-  330 (368)
Q Consensus       263 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-  330 (368)
                                 .+|.|..||..+++...............+...+.+++.++.||.|+.+|.+++  +.+.++...... 
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~~~  508 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG--KELWNFKMPSGGI  508 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC--CEEEEEeCCCCcE
Confidence                       347899999988776544333222111233446778888999999999998876  556655432211 


Q ss_pred             eeEEEEecCCee
Q 047325          331 VKCLAVEEDRDS  342 (368)
Q Consensus       331 v~~l~~~~~~~~  342 (368)
                      -.-+.+..+|+.
T Consensus       509 ~~p~~~~~~G~~  520 (571)
T 2ad6_A          509 GSPMTYSFKGKQ  520 (571)
T ss_dssp             SCCEEEEETTEE
T ss_pred             eeeEEEEECCEE
Confidence            122345567763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=4.2e-07  Score=76.64  Aligned_cols=218  Identities=13%  Similarity=0.144  Sum_probs=130.5

Q ss_pred             EEEEccCCCcEEEEcCCcc------eeccc------C-CCCCeeEEEEe-CCEEEEEeCC------CeEEEEeecCCCcc
Q 047325           56 LLYTGSDSKNIRVWKNLKE------FCGFK------A-SSGLVKAIVIS-GEKIFTGHQD------GKIRVWKISPKNQS  115 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~------~~~~~------~-~~~~v~~~~~~-~~~l~s~~~d------g~i~vw~~~~~~~~  115 (368)
                      ++++|..++.|.++|+.+.      .....      . -...-..+... +..++++..+      |.|.+.|.++.+..
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~  177 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL  177 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence            6777888999999998522      11110      0 00011222333 2366665555      78999999888755


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-------------------CCC
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-------------------WDR  176 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~d~  176 (368)
                      ........                             ...--..+.|+|+++.+++..                   .+.
T Consensus       178 ~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d  228 (462)
T 2ece_A          178 GKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN  228 (462)
T ss_dssp             EECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred             EEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence            44432210                             011123578899999888874                   368


Q ss_pred             cEEEEEccCCeEEEEeecC-C-CceEEEEe--CCCC-eEEEEc------CCCeEEEEEcCCCCCCcccccc----eeec-
Q 047325          177 TFKVWRISDSKCLESVSAH-D-DAVNSVVS--SSEG-LIFTGS------ADGTVKVWKREQHGKGTKHSLA----QTLL-  240 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--~~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~----~~~~-  240 (368)
                      .|.+||+.+++.+.++... . .....+.|  +|++ ++++++      .+++|.+|..+.+ .....+.+    .... 
T Consensus       229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~  307 (462)
T 2ece_A          229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEG  307 (462)
T ss_dssp             EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCS
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccc
Confidence            9999999999888888753 1 23445544  9998 555444      5678887766431 10000000    0000 


Q ss_pred             ----------cccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCc---cccceeeec-------c--------ceEEEE
Q 047325          241 ----------KQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQ---LSHGGVLKG-------H--------KLAVLC  291 (368)
Q Consensus       241 ----------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~-------~--------~~~~~~  291 (368)
                                +.......+.+++|+++|.++.. .+.|.+||+...   +.......+       |        .-.-+.
T Consensus       308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~  387 (462)
T 2ece_A          308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE  387 (462)
T ss_dssp             SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred             cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence                      00234678999999998887664 679999998632   222222222       0        124478


Q ss_pred             EEeCCCEEEEee
Q 047325          292 LAAAGKLVFSGS  303 (368)
Q Consensus       292 ~~~~~~~l~~~~  303 (368)
                      +++||++|+++.
T Consensus       388 lSpDGk~LyVaN  399 (462)
T 2ece_A          388 ISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             EcCCCCEEEEEc
Confidence            999999999887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=2.2e-07  Score=84.73  Aligned_cols=193  Identities=9%  Similarity=0.125  Sum_probs=113.1

Q ss_pred             cCCEEEEccCCCcEEEEcCCccee--cccCCCC----------C-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG----------L-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~----------~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++.++.++.++.|.-+|..+...  .+.....          . -..+.+.++.++.++.|+.|..+|..+++......
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            456667777788888888754322  2221111          0 12345568889999999999999999998765544


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEee
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~  193 (368)
                      .......                       +.....++    +  .+..++++..      +|.|..+|..+|+.+-.+.
T Consensus       145 ~~~~~~~-----------------------~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          145 TTDPAKP-----------------------YSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             CSCTTSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cCCCCCc-----------------------ceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            3210000                       00011111    1  1234555543      5899999999999987775


Q ss_pred             cCC---C----------------------------ceEEEEeCCCC-eEEEEcCCC-------------------eEEEE
Q 047325          194 AHD---D----------------------------AVNSVVSSSEG-LIFTGSADG-------------------TVKVW  222 (368)
Q Consensus       194 ~~~---~----------------------------~v~~~~~~~~~-~l~~~~~dg-------------------~i~i~  222 (368)
                      ...   .                            ....+++.++. .++.+..++                   .|.-+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            311   0                            01134666654 777777665                   38889


Q ss_pred             EcCCCCCCcccccceeecccc-------ccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCcccc
Q 047325          223 KREQHGKGTKHSLAQTLLKQE-------CAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      |.+++......    ....|.       .+.....+..+++   .++.++.+|.++++|.++++.+
T Consensus       276 D~~tG~~~W~~----~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          276 RPDTGKLAWHY----QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTTCCEEEEE----ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCceeeEe----ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            98876432111    111111       2222223333564   6889999999999999887655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.85  E-value=1.1e-06  Score=68.68  Aligned_cols=186  Identities=7%  Similarity=0.063  Sum_probs=113.5

Q ss_pred             EeEEEEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeecCCCc-eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          157 VSCMSLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSAHDDA-VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ...+.|+ ++.++.+.+.+|  .|+.+|+.+++.+..+...... --.++...+...+..-.++.+.++|..+...    
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~----  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ----  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE----
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE----
Confidence            4788898 666666777665  8999999999999888754332 1234544333444555689999999987632    


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEE---EEEEe-CCCEEEEeeCCCeE
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAV---LCLAA-AGKLVFSGSADKTI  308 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~---~~~~~-~~~~l~~~~~dg~i  308 (368)
                        ...+....   ....+.++++.|+.+..++.|.++|..+.+........ ...++   ..+.+ +|++.+..-.++.|
T Consensus       120 --~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I  194 (262)
T 3nol_A          120 --VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI  194 (262)
T ss_dssp             --EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             --EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence              33332221   11223356777777777888999999876655433221 11121   11222 66655555568889


Q ss_pred             EEEecCCCceeeeEeeecc------------ccCeeEEEEecCCeee-ecCCcceEEEE
Q 047325          309 CVWRRDGAIHTCLSVLTGH------------TGPVKCLAVEEDRDSS-SSTSSCAQRWI  354 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~~-~~~~~~~~~w~  354 (368)
                      .+.|..++  +.+..+.-.            ..-.+.|+|+|++..+ +++-.-.++|.
T Consensus       195 ~vIDp~tG--~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e  251 (262)
T 3nol_A          195 VRIDPETG--KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE  251 (262)
T ss_dssp             EEECTTTC--BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             EEEECCCC--cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence            99988776  444444321            1346899999987643 33333344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=9.2e-06  Score=75.83  Aligned_cols=270  Identities=13%  Similarity=0.116  Sum_probs=158.9

Q ss_pred             CCcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc----------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeec
Q 047325           44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK----------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKIS  110 (368)
Q Consensus        44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~----------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~  110 (368)
                      ...|.++..+.+ .|..|+.++-|..++.... ...+.          .....|.++..+ ...|..|+.++-|..++..
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG  391 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence            456889888755 6777887777888886532 22221          134568888887 4677888877778888875


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE  190 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (368)
                      ++.........                             ......|.++...+++. |..|+.++-|..+|..+++...
T Consensus       392 ~~~~~~~~~~~-----------------------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          392 KRVAIYNKENR-----------------------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             EEEEECC----------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE
T ss_pred             CCeEEEccCCC-----------------------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE
Confidence            43221110000                             01346788998887776 5557766779999987776443


Q ss_pred             Eee--cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          191 SVS--AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       191 ~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                      ...  .....|.++...+++.|..|+. +.|..+|.....-. ..............|.++...+++++.+ |+.++-+.
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~  518 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVG  518 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEE
T ss_pred             eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEE
Confidence            221  1346789999988887777776 66889998654210 0000000001135789999998887555 44433477


Q ss_pred             EEeCCCccccceeeec---cceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeee
Q 047325          269 FWEREKQLSHGGVLKG---HKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~  343 (368)
                      .||.++.... .....   ....+.++..+ ...|..|+.+|.|..||..+..........+ ....|.++...++|.+-
T Consensus       519 ~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW  597 (781)
T 3v9f_A          519 IYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIW  597 (781)
T ss_dssp             EECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred             EEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEE
Confidence            7887654322 11111   13356666654 2334555557765888776543222111111 12357888888888755


Q ss_pred             ecCC
Q 047325          344 SSTS  347 (368)
Q Consensus       344 ~~~~  347 (368)
                      +++.
T Consensus       598 ~~t~  601 (781)
T 3v9f_A          598 ASTN  601 (781)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            5444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=8e-06  Score=76.22  Aligned_cols=260  Identities=14%  Similarity=0.171  Sum_probs=152.2

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcce-ecc----cCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF-CGF----KASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~-~~~----~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      ..|.++..+++ .|..|+.++-|..+|..+.. ..+    ......|.++..+ ...|..|+.++-+..++..+++....
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence            56889988754 66677766668888876432 222    2234678888887 56777788877788888766542211


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC--
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH--  195 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--  195 (368)
                      ....                              .....|.++...+++. |..|+. +-|..+|..+++........  
T Consensus       443 ~~~~------------------------------~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~  490 (781)
T 3v9f_A          443 ELEK------------------------------NELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNS  490 (781)
T ss_dssp             CSTT------------------------------TCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTS
T ss_pred             ccCC------------------------------CCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCccc
Confidence            1000                              0345788888887775 555565 56899998876544332222  


Q ss_pred             ---CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec----cccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325          196 ---DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAVTALVVSSSRSIVYCGSSDGLVN  268 (368)
Q Consensus       196 ---~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~  268 (368)
                         ...|.++...+++.|..|+.++.|..+|.+...       ...+.    .....|.++...+++++.++. .+|.+.
T Consensus       491 ~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~  562 (781)
T 3v9f_A          491 QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-------VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVC  562 (781)
T ss_dssp             SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-------EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-------EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceE
Confidence               357899999988977777775568888876431       11111    124568899998888755544 467558


Q ss_pred             EEeCCCccccceee-ec-cceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-c--CeeEEEEecCCe
Q 047325          269 FWEREKQLSHGGVL-KG-HKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-G--PVKCLAVEEDRD  341 (368)
Q Consensus       269 i~d~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~--~v~~l~~~~~~~  341 (368)
                      .||.++........ .+ ....+.++..  +|. |..++.+| |..++.++..........+-. .  ...++...++|.
T Consensus       563 ~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~G-l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~  640 (781)
T 3v9f_A          563 FPSARNFDYQVFQRKEGLPNTHIRAISEDKNGN-IWASTNTG-ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL  640 (781)
T ss_dssp             ESCTTTCCCEEECGGGTCSCCCCCEEEECSSSC-EEEECSSC-EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC
T ss_pred             EECCCCCcEEEccccCCCCCceEEEEEECCCCC-EEEEcCCc-eEEEECCCCceEEecccCCccccccccCceEECCCCE
Confidence            88877543221110 00 1123445554  454 44455566 667776654222111111111 1  134667777887


Q ss_pred             eeecC
Q 047325          342 SSSST  346 (368)
Q Consensus       342 ~~~~~  346 (368)
                      +..++
T Consensus       641 l~~g~  645 (781)
T 3v9f_A          641 IYFGS  645 (781)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            54433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.78  E-value=8e-07  Score=81.07  Aligned_cols=260  Identities=11%  Similarity=0.050  Sum_probs=135.6

Q ss_pred             cCCEEEEccCCC-----------cEEEEcCCcce----ecc-cCCCCCeeEEEE--eCCEEEEEeC-CCeEEEEeecCCC
Q 047325           53 SKDLLYTGSDSK-----------NIRVWKNLKEF----CGF-KASSGLVKAIVI--SGEKIFTGHQ-DGKIRVWKISPKN  113 (368)
Q Consensus        53 ~~~~l~s~~~dg-----------~i~iw~~~~~~----~~~-~~~~~~v~~~~~--~~~~l~s~~~-dg~i~vw~~~~~~  113 (368)
                      ++.+++.|+.+.           .+.+||..+..    ... ..+.....++++  ++..++.|+. +..+.+||..+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            455777776543           57889876432    112 123333444554  3777788874 5579999987654


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CC-----CcEEEEEccCCe
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WD-----RTFKVWRISDSK  187 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~  187 (368)
                      -......   +                            ....-.++...++++.++.|+ .+     ..+.+||..+.+
T Consensus       277 W~~~~~~---~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          277 WIPGPDM---Q----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEECCCC---S----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeECCCC---C----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            2111100   0                            111113455667889888888 34     579999998776


Q ss_pred             EEEEe----e-cCCCceEEEEeCCCC-eEEEEcCC---------CeEEEEEcCCCCCCcccccceeecc------ccccE
Q 047325          188 CLESV----S-AHDDAVNSVVSSSEG-LIFTGSAD---------GTVKVWKREQHGKGTKHSLAQTLLK------QECAV  246 (368)
Q Consensus       188 ~~~~~----~-~~~~~v~~~~~~~~~-~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~------~~~~i  246 (368)
                      -...-    . ..... ....+..++ .++.|+.+         ..+..||.....-   .........      ....-
T Consensus       326 W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w---~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          326 WTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD---VKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             EEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE---EEEEEECEETTEECCCCBTC
T ss_pred             ceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce---eecCCccccccccCCCCCCC
Confidence            33320    0 00000 001122333 33444433         4567888875421   011110000      01122


Q ss_pred             EEEEEcC-CCCEEEEecCCC-----------cEEEEeCCCccccce---eee-ccceEEEEEEeCCCEEEEeeCC-----
Q 047325          247 TALVVSS-SRSIVYCGSSDG-----------LVNFWEREKQLSHGG---VLK-GHKLAVLCLAAAGKLVFSGSAD-----  305 (368)
Q Consensus       247 ~~~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~~~d-----  305 (368)
                      .++.+.. ++++++.|+.++           .+.+||..+..-...   ... .......++.+++++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            3444433 677888887543           677888765432211   111 1111223445699999999865     


Q ss_pred             ------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          306 ------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       306 ------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                            ..+.+||..+.....+..+...........+.|++++++.++
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence                  468999988775555443332233334455678998654443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=1.3e-05  Score=66.26  Aligned_cols=235  Identities=9%  Similarity=-0.006  Sum_probs=134.3

Q ss_pred             EEEEEecC--CEEEEccCCCcEEEEcCCcc-eecccC--------------------CCCCeeEEEEe--CCEEEEEeCC
Q 047325           47 IYSLAASK--DLLYTGSDSKNIRVWKNLKE-FCGFKA--------------------SSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        47 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~-~~~~~~--------------------~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      ..++++++  ++++++..++.|..|+.... ...+..                    .......++++  +..|+.+...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            34566653  46888888899999987642 322211                    11346788887  4677777766


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeC------
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASW------  174 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~------  174 (368)
                      +.|..+|..++.........                        .    .........+++.+ ++++.++-..      
T Consensus       101 ~~i~~~d~~~g~~~~~~~~~------------------------~----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~  152 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQLATSV------------------------D----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDR  152 (322)
T ss_dssp             TEEEEECTTCEECEEEESEE------------------------T----TEECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred             CCEEEEeCCCCEEEEecccC------------------------C----CCcccccceEEEecCCCEEEEECCccccccc
Confidence            66777876543211100000                        0    00123467899999 8876665432      


Q ss_pred             -----------CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          175 -----------DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       175 -----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                                 ++.|..+|..+++....... ......+++++++ .|+.+ ..++.|..|++....... ......   
T Consensus       153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~---  227 (322)
T 2fp8_A          153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK---  227 (322)
T ss_dssp             CHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE---
T ss_pred             ccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe---
Confidence                       36788899877765433322 2334678999998 45544 567899999987532111 111111   


Q ss_pred             ccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeecc---ceEEEEEE-eCCCEEEEeeCCCe
Q 047325          242 QECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGH---KLAVLCLA-AAGKLVFSGSADKT  307 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~dg~  307 (368)
                      ..+ ...+++.++|++.++...          .+.|..+|... +.........   -..+..+. .+++++++...++.
T Consensus       228 ~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          228 IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGS  305 (322)
T ss_dssp             CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred             CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence            223 778999999987666544          46688888653 2221111111   11122222 45666666667888


Q ss_pred             EEEEecCCC
Q 047325          308 ICVWRRDGA  316 (368)
Q Consensus       308 i~iw~~~~~  316 (368)
                      |.++++...
T Consensus       306 i~~~~~~~~  314 (322)
T 2fp8_A          306 VGILVYDKK  314 (322)
T ss_dssp             EEEEEC---
T ss_pred             eEEEecccc
Confidence            999987543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=4.8e-06  Score=68.84  Aligned_cols=236  Identities=14%  Similarity=0.065  Sum_probs=123.9

Q ss_pred             eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      ..+++++  ++.++++..++.|..|+..++.............. .  ..  ....        ..........+..+++
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~--~g~~--------~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNK-A--FC--ENST--------DAEKRPLCGRTYDISY   87 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCH-H--HH--TTCC--------CGGGHHHHCCEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccc-c--cc--cccc--------chhccccCCCCceEEE
Confidence            4456665  55688888899999998775432111000000000 0  00  0000        0000001235778999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCC-CCeEEEEcC------------------CCe
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSS-EGLIFTGSA------------------DGT  218 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~~~~~------------------dg~  218 (368)
                      .++...|+++...+.|..+|..+++.. .+..     .......+++.+ +|.++.+..                  ++.
T Consensus        88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           88 NLQNNQLYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             ETTTTEEEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             cCCCCcEEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence            973345666655566888997755422 2211     123467899999 884444332                  367


Q ss_pred             EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccc-eee-eccceEEEEEEeC
Q 047325          219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHG-GVL-KGHKLAVLCLAAA  295 (368)
Q Consensus       219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~~~~~  295 (368)
                      |..+|.....       .............++++|+++.|+.+ ...+.|..|++.....-. ..+ ......-+++.++
T Consensus       167 v~~~d~~~~~-------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~  239 (322)
T 2fp8_A          167 LIKYDPSTKE-------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD  239 (322)
T ss_dssp             EEEEETTTTE-------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTT
T ss_pred             EEEEeCCCCE-------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCC
Confidence            8888875431       11111112334678999999866555 566899999987532110 111 1111222566677


Q ss_pred             CCEEEEeeC----------CCeEEEEecCCCceeeeEeeecc----ccCeeEEEEecCCeeeec
Q 047325          296 GKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGH----TGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       296 ~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~  345 (368)
                      |++.++...          .+.|..+|.+.   +.+..+...    ...++.+++ .++.+..+
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~  299 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFG---NILEVIPLPPPFAGEHFEQIQE-HDGLLYIG  299 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECTTS---CEEEEEECCTTTTTSCCCEEEE-ETTEEEEE
T ss_pred             CCEEEEecCcccccccCCCccEEEEECCCC---CEEEEEECCCCCccccceEEEE-eCCEEEEe
Confidence            886666544          45677776542   344444332    234677776 45654333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.75  E-value=1.6e-05  Score=65.13  Aligned_cols=239  Identities=10%  Similarity=0.058  Sum_probs=126.7

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeC-CC-
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQ-DG-  102 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg-  102 (368)
                      .+....+.+..+... .....+++++  +++++-..++.|..||.................++++  ++.+++... ++ 
T Consensus        17 ~~~~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           17 IELAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             BCCCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcc
Confidence            334445556666433 4567788864  4666666789999999775543332234567888887  554444332 22 


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR  182 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  182 (368)
                      .|..++..+++........                               .......++..+++..+++-..++.|..+|
T Consensus        96 ~v~~~d~~~g~~~~~~~~~-------------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLP-------------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLID  144 (306)
T ss_dssp             EEEEEECTTSCEEEEEECT-------------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEcCCCCeEEEEEeCC-------------------------------CccccCcccccCCCcEEEEECCCCeEEEEe
Confidence            3555565554421111000                               111123344445444444444578899999


Q ss_pred             ccCCeE-EEEee---------cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325          183 ISDSKC-LESVS---------AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       183 ~~~~~~-~~~~~---------~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  250 (368)
                      ..+++. +....         ..-...+.+  ++++  .+++-...+.|..+++........   ...+.. ......++
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---~~~~~~-~~~P~gi~  218 (306)
T 2p4o_A          145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---PEIFVE-QTNIDDFA  218 (306)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC---CEEEEE-SCCCSSEE
T ss_pred             CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---cEEEec-cCCCCCeE
Confidence            876532 21110         111234455  5666  455556688999999874211111   111111 12356688


Q ss_pred             EcCCCCEEEEecCCCcEEEEeCCCccccceeee-c-cceEEEEEE---eCCCEEEEeeCC
Q 047325          251 VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-G-HKLAVLCLA---AAGKLVFSGSAD  305 (368)
Q Consensus       251 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~~~~---~~~~~l~~~~~d  305 (368)
                      ++++|++.++....+.|.++|............ + .....+++.   ++++.|++++..
T Consensus       219 vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          219 FDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            999998877777788999999763221111111 1 222334454   566666655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.75  E-value=3.8e-06  Score=65.60  Aligned_cols=174  Identities=12%  Similarity=0.066  Sum_probs=110.9

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC-ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD-AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  234 (368)
                      ....+.|+. +.++.+.+.+|.|+.+|+.+++.+..+ -... .--.++...+...+..-.++.+.+||..+..      
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------  127 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------  127 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE------
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc------
Confidence            346888874 566777778889999999999988877 3322 1234666555455556678999999998653      


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEE---EEEEe-CCCEEEEeeCCCeEE
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAV---LCLAA-AGKLVFSGSADKTIC  309 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~---~~~~~-~~~~l~~~~~dg~i~  309 (368)
                      ....+...... ..++  ++++.|+.+..++.|.++|.++.+....... .+...+   ..+.+ +|++.+....++.|.
T Consensus       128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~  204 (268)
T 3nok_A          128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL  204 (268)
T ss_dssp             EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence            23333322211 2333  5678888887889999999988665543322 122221   22333 665555555678899


Q ss_pred             EEecCCCceeeeEeeecc-------------ccCeeEEEEecCCee
Q 047325          310 VWRRDGAIHTCLSVLTGH-------------TGPVKCLAVEEDRDS  342 (368)
Q Consensus       310 iw~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~  342 (368)
                      +.|..++  +.+..+.-.             ..-.+.|+++|++..
T Consensus       205 vIDp~TG--~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r  248 (268)
T 3nok_A          205 EIDPATG--TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR  248 (268)
T ss_dssp             EECTTTC--BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred             EEeCCCC--cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence            9988776  444444311             135789999998664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.75  E-value=5.5e-06  Score=74.02  Aligned_cols=281  Identities=12%  Similarity=0.080  Sum_probs=145.9

Q ss_pred             EEEccCCCcEEEEcCCcceecc--cCCC----CCee-EEEEeCCEEEEEe------CCCeEEEEeecCCCccccccCCcc
Q 047325           57 LYTGSDSKNIRVWKNLKEFCGF--KASS----GLVK-AIVISGEKIFTGH------QDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        57 l~s~~~dg~i~iw~~~~~~~~~--~~~~----~~v~-~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      ++.++.|+.+..+|..+.....  ....    ..+. +-.+.++.++.++      .+|.|+.+|.++++..........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            7778888888888876432221  1111    0111 1122356677665      389999999999987665443221


Q ss_pred             ccceeeeeccCCCCcee-------EecccceeeeeecCCCE-eEEEEcCCCCEEEEEeCC----------------CcEE
Q 047325          124 PTLKDIFKSSIKPSNYI-------EVRRHRTALWIRHSDAV-SCMSLDQDCGLLYTASWD----------------RTFK  179 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d----------------~~i~  179 (368)
                      ......-.........+       .....  ..+..-...+ ..+++.+...+++.+..+                +.|.
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g--~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEG--DAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSST--TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             ccccccccccccccccccccccccccCCC--cceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            10000000000000000       00000  0000000111 134566777777777654                3799


Q ss_pred             EEEccCCeEEEEeecCCC----------ceEEEEeC-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccce------e
Q 047325          180 VWRISDSKCLESVSAHDD----------AVNSVVSS-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ------T  238 (368)
Q Consensus       180 iwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~  238 (368)
                      .+|..+|+.+-.++....          ++. +... .+|    .++.++.+|.++++|.++++.........      .
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            999999999877764321          121 2221 344    46678899999999998764321111000      0


Q ss_pred             ec-cccccE--------------------------EEEEEcCCCCEEEEec-----------------------------
Q 047325          239 LL-KQECAV--------------------------TALVVSSSRSIVYCGS-----------------------------  262 (368)
Q Consensus       239 ~~-~~~~~i--------------------------~~~~~~~~~~~l~~~~-----------------------------  262 (368)
                      .. ....++                          ..++++|+..++++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence            00 000001                          1345666555544321                             


Q ss_pred             ----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-e
Q 047325          263 ----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-V  331 (368)
Q Consensus       263 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v  331 (368)
                                ..|.|.-||+.+++.......+.....-.+...+.+++.++.||.++.||.+++  +.+.+++-.... .
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG--~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG--DLLWKFKIPSGAIG  518 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCS
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCC--CEEEEeeCCCCcEe
Confidence                      347788889888776544332221111224456888888999999999999887  566665433221 1


Q ss_pred             eEEEEecCCee
Q 047325          332 KCLAVEEDRDS  342 (368)
Q Consensus       332 ~~l~~~~~~~~  342 (368)
                      .-+.+..+|+.
T Consensus       519 ~P~~y~~~G~q  529 (599)
T 1w6s_A          519 YPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEETTEE
T ss_pred             ccEEEEeCCEE
Confidence            22455667763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.71  E-value=3.1e-05  Score=62.03  Aligned_cols=173  Identities=9%  Similarity=-0.008  Sum_probs=103.6

Q ss_pred             CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ..+..+++++++..|+.+. .++.|..+|+..+.....+.........+++.+++  .+++-...+.|.++++.....  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            3467899999766665554 56799999987655443333333467889998864  445555678999999864311  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecC---CCcEEEEeCCCccccceee-e-ccceEEEEEEeCCCEEEEe-eCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---DGLVNFWEREKQLSHGGVL-K-GHKLAVLCLAAAGKLVFSG-SAD  305 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~-~~d  305 (368)
                          .............++++|++..|+.+..   .+.|..+++...... ... . .....-+++++++..|+.+ ...
T Consensus       114 ----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          114 ----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             ----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence                1111112245789999996665555443   468888887643221 111 1 1223346778876655544 456


Q ss_pred             CeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      +.|.+++++....  ...... ......++..
T Consensus       189 ~~I~~~~~~g~~~--~~~~~~-~~~P~gi~~d  217 (267)
T 1npe_A          189 HRAECLNPAQPGR--RKVLEG-LQYPFAVTSY  217 (267)
T ss_dssp             TEEEEEETTEEEE--EEEEEC-CCSEEEEEEE
T ss_pred             CEEEEEecCCCce--EEEecC-CCCceEEEEe
Confidence            8899999875422  222222 2334567765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=1.5e-05  Score=71.25  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=107.3

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEEccCCeEEEEeec--CC--------CceEEEEe
Q 047325          159 CMSLDQDCGLLYTASW--------------------D----RTFKVWRISDSKCLESVSA--HD--------DAVNSVVS  204 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~  204 (368)
                      .++++|+..+++.+..                    |    +.|..+|..+|+.+-.++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677777777777663                    2    5899999999999887753  21        1221 122


Q ss_pred             C-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccce------ee-------------c---------ccccc------
Q 047325          205 S-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ------TL-------------L---------KQECA------  245 (368)
Q Consensus       205 ~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~-------------~---------~~~~~------  245 (368)
                      . .+|    .++.++.+|.++++|.++++.........      ..             .         .....      
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 344    57788999999999988764321111100      00             0         00000      


Q ss_pred             -----EEEEEEcCCCCEEEEec---------------------------------CCCcEEEEeCCCccccceeeeccce
Q 047325          246 -----VTALVVSSSRSIVYCGS---------------------------------SDGLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       246 -----i~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                           -..++++|+..++++..                                 .+|.|.-||+.+++...........
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~  488 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL  488 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence                 01345666555544432                                 2578999999888766444332221


Q ss_pred             EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe-eEEEEecCCee
Q 047325          288 AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV-KCLAVEEDRDS  342 (368)
Q Consensus       288 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~  342 (368)
                      .-..+...+.+++.|+.||.++.||.+++  +.+.+++...... .-+.+..+|+.
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG--~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFDAKSG--KELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cccceEeCCCEEEEECCCCcEEEEECCCC--CEEEEecCCCCcccCceEEEECCEE
Confidence            11223446788888999999999998877  6666665433221 22666677763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.68  E-value=2.6e-05  Score=60.35  Aligned_cols=188  Identities=10%  Similarity=0.021  Sum_probs=114.1

Q ss_pred             CCEeEEEEcCCCCEEEEEeCC--CcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTASWD--RTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .....+.|++ +.++.+.+.+  +.|+.+|+.+++.+..+...... --.++...+......-.++.+.++|.++..   
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~---   96 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT---   96 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence            3466899986 4555555654  48999999999999888654332 133444444355556678999999998653   


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceE---EEEEEe-CCCEEEEeeCCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLA---VLCLAA-AGKLVFSGSADK  306 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~~-~~~~l~~~~~dg  306 (368)
                         ....+.....+ ..++  +++..|+.+..++.|.++|.++.+........ +...   +..+.+ ++++.+....+.
T Consensus        97 ---~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~  170 (243)
T 3mbr_X           97 ---PRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS  170 (243)
T ss_dssp             ---EEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred             ---EEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC
Confidence               23333322222 3343  46777777777899999999886655333221 2222   223334 565555554677


Q ss_pred             eEEEEecCCCceeeeEeeec-------------cccCeeEEEEecCCeee-ecCCcceEEEE
Q 047325          307 TICVWRRDGAIHTCLSVLTG-------------HTGPVKCLAVEEDRDSS-SSTSSCAQRWI  354 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~-~~~~~~~~~w~  354 (368)
                      .|.+.|..++  +.+..+.-             -..-.+.|+++|++..+ +++-.-.++|.
T Consensus       171 ~I~vIDp~tG--~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~  230 (243)
T 3mbr_X          171 RIARIDPASG--KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE  230 (243)
T ss_dssp             EEEEECTTTC--BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             eEEEEECCCC--CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence            8999988776  44444431             11356899999976643 33333344443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.67  E-value=1.9e-05  Score=69.21  Aligned_cols=149  Identities=13%  Similarity=0.008  Sum_probs=91.8

Q ss_pred             cEEEEEccC--CeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCC-----CCcccccceeeccccccE
Q 047325          177 TFKVWRISD--SKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHG-----KGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       177 ~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~i  246 (368)
                      .|.+.|..+  ++. +..+... ....++.++|||  .++++..+.+|.++|+....     +............-....
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            488888877  444 4555433 345688999999  45555668999999998431     000001111122334567


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCCc---------cccceeeeccceE--E-----EEEEeCCCEEEEeeC---CCe
Q 047325          247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ---------LSHGGVLKGHKLA--V-----LCLAAAGKLVFSGSA---DKT  307 (368)
Q Consensus       247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~~---dg~  307 (368)
                      ..++|+|+|...++...|+.|.+||+...         ......+..|..+  .     ..+++||++|+++..   |+.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            88999999955556778999999998762         1122233333222  1     123578999998754   432


Q ss_pred             ----------EEEEecCCCceeeeEeeec
Q 047325          308 ----------ICVWRRDGAIHTCLSVLTG  326 (368)
Q Consensus       308 ----------i~iw~~~~~~~~~~~~~~~  326 (368)
                                -.++|+...+.+.+.....
T Consensus       414 ~~~gp~~~~~~ql~dis~~~m~lv~d~p~  442 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDKMVLVHDGPT  442 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred             ccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence                      1889997766666655543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=2.4e-05  Score=61.87  Aligned_cols=190  Identities=7%  Similarity=0.024  Sum_probs=118.5

Q ss_pred             eeEEEEeC-CEEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           85 VKAIVISG-EKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        85 v~~~~~~~-~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      ...+.+++ ..|+.++.   ++.|++.|+.+++.........                               ......+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------~~fgeGi   71 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------SYFGEGL   71 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------TCCEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------CcceEEE
Confidence            46788874 56666543   5789999998887544332211                               1111234


Q ss_pred             EEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccccee
Q 047325          161 SLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQT  238 (368)
Q Consensus       161 ~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  238 (368)
                      ++.  ++.|+.+ -.++.+.++|..+.+.+.++......-..++  +++ .++++..++.|.++|..+...      ...
T Consensus        72 ~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v------~~~  141 (266)
T 2iwa_A           72 TLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKL------IKK  141 (266)
T ss_dssp             EEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCE------EEE
T ss_pred             EEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcE------EEE
Confidence            554  3455444 4578999999999999998864312223344  455 566666788999999976532      222


Q ss_pred             ecc-----ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec--------------cceEEEEEEeCCC-E
Q 047325          239 LLK-----QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG--------------HKLAVLCLAAAGK-L  298 (368)
Q Consensus       239 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~  298 (368)
                      +.-     .-..++.+.|. ++...+....++.|.+.|..+++.......+              ....-++++++++ +
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            221     11236677887 6655555556789999999987765433321              0113467778765 5


Q ss_pred             EEEeeCCCeEEEEecCCC
Q 047325          299 VFSGSADKTICVWRRDGA  316 (368)
Q Consensus       299 l~~~~~dg~i~iw~~~~~  316 (368)
                      ++++...+.|.+.++...
T Consensus       221 fVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          221 FVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTCSEEEEEEEEEC
T ss_pred             EEECCCCCeEEEEEEecc
Confidence            566667888988877543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.66  E-value=1.7e-06  Score=67.52  Aligned_cols=191  Identities=9%  Similarity=0.114  Sum_probs=118.7

Q ss_pred             ceeeeccCcCCc--EEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEE-eCCCeEEEEe
Q 047325           35 GLIGSLVREEGH--IYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTG-HQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~vw~  108 (368)
                      +++.++ .|...  ...|.|+++ +..+.+.+|.|+++|+.+.  +.........-..+.+.++.|+.. -.++.+.+||
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred             EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence            566666 45433  578899877 6677788899999998743  222211111223477776655554 4688999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      .++.+........                                 ..-..++  ++++.|+.+..++.|.++|..+.+.
T Consensus       123 ~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A          123 GMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             TTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred             CCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence            9887754433321                                 1112333  4577788777789999999999998


Q ss_pred             EEEeecC--C---CceEEEEeCCCCeEEEE-cCCCeEEEEEcCCCCCCccccccee-------eccccccEEEEEEcCCC
Q 047325          189 LESVSAH--D---DAVNSVVSSSEGLIFTG-SADGTVKVWKREQHGKGTKHSLAQT-------LLKQECAVTALVVSSSR  255 (368)
Q Consensus       189 ~~~~~~~--~---~~v~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~  255 (368)
                      +..+...  .   ..++.+.|. +|.|++. -.+..|.+.|.+++...........       ......-.+.|+++|++
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence            8877642  2   234667776 5644444 4688999999987643111111000       01122467999999976


Q ss_pred             CEEEEec
Q 047325          256 SIVYCGS  262 (368)
Q Consensus       256 ~~l~~~~  262 (368)
                      +.|+..+
T Consensus       247 ~rlfVTG  253 (268)
T 3nok_A          247 GRIFMTG  253 (268)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEeC
Confidence            6555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.65  E-value=7.3e-06  Score=73.19  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=109.1

Q ss_pred             cCCEEEEccC-CCcEEEEcC-Cccee--cccCCCC-----------CeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           53 SKDLLYTGSD-SKNIRVWKN-LKEFC--GFKASSG-----------LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        53 ~~~~l~s~~~-dg~i~iw~~-~~~~~--~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      .++.++.++. ++.|.-+|. .+...  .+.....           ....+...+..++.++.|+.+..+|..+++....
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            3556666666 788888887 54322  2211110           0123455688999999999999999999987654


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEE
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLES  191 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~  191 (368)
                      .........                       +.-...++    ..  +..+++++.      ++.|..+|..+|+.+-+
T Consensus       141 ~~~~~~~~~-----------------------~~~~~~P~----v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          141 VEVCDPKVG-----------------------STLTQAPF----VA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EECCCGGGT-----------------------CBCCSCCE----EE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ecCCCCCcc-----------------------ceeccCCE----EE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            433210000                       00011111    11  235666654      78999999999998877


Q ss_pred             eecCCCc-------------------------------------e-EEEEeCCC-CeEEEEcCC----------------
Q 047325          192 VSAHDDA-------------------------------------V-NSVVSSSE-GLIFTGSAD----------------  216 (368)
Q Consensus       192 ~~~~~~~-------------------------------------v-~~~~~~~~-~~l~~~~~d----------------  216 (368)
                      +......                                     + ..+++.++ +.++.+..+                
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            6532211                                     0 11334443 355555432                


Q ss_pred             CeEEEEEcCCCCCCcccccce----eeccccccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCccccc
Q 047325          217 GTVKVWKREQHGKGTKHSLAQ----TLLKQECAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       217 g~i~i~d~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      +.|..+|.++++.....+...    .......++. +...++++   .++.++.+|.++++|.++++.+.
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence            368889988764311111100    0001112222 22234663   57788899999999998876543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=9.2e-06  Score=63.48  Aligned_cols=193  Identities=10%  Similarity=0.050  Sum_probs=119.0

Q ss_pred             CceeeeccCcCCc--EEEEEecCC-EEEEccCCC--cEEEEcCCcc--eecccCCCC-CeeEEEEeCCEEEEEe-CCCeE
Q 047325           34 NGLIGSLVREEGH--IYSLAASKD-LLYTGSDSK--NIRVWKNLKE--FCGFKASSG-LVKAIVISGEKIFTGH-QDGKI  104 (368)
Q Consensus        34 ~~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~dg--~i~iw~~~~~--~~~~~~~~~-~v~~~~~~~~~l~s~~-~dg~i  104 (368)
                      .+++.++ .|...  ...|.|+++ ++.+.+.+|  .|+++|+.+.  +........ .-..+.+.++.|+... .++.+
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             eEEEEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            4556666 44433  577888766 555666665  8999998754  223322222 2244777777776665 48899


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      .++|.++.+........                                 .  ....+.++++.|+.+..++.|.++|..
T Consensus       110 ~v~D~~t~~~~~ti~~~---------------------------------~--eG~glt~dg~~L~~SdGs~~i~~iDp~  154 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYD---------------------------------G--EGWGLTHNDQYLIMSDGTPVLRFLDPE  154 (262)
T ss_dssp             EEEETTTCCEEEEEECS---------------------------------S--CCCCEEECSSCEEECCSSSEEEEECTT
T ss_pred             EEEECccCcEEEEEECC---------------------------------C--CceEEecCCCEEEEECCCCeEEEEcCC
Confidence            99999988754443321                                 1  112233466777776667889999999


Q ss_pred             CCeEEEEeecC--C---CceEEEEeCCCCeEEEE-cCCCeEEEEEcCCCCCCccccccee------eccccccEEEEEEc
Q 047325          185 DSKCLESVSAH--D---DAVNSVVSSSEGLIFTG-SADGTVKVWKREQHGKGTKHSLAQT------LLKQECAVTALVVS  252 (368)
Q Consensus       185 ~~~~~~~~~~~--~---~~v~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~  252 (368)
                      +.+.+..+...  .   ..++.+.+. +|.+++. -.+..|.+.|.+++...........      ........+.|+++
T Consensus       155 T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d  233 (262)
T 3nol_A          155 SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD  233 (262)
T ss_dssp             TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE
T ss_pred             CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc
Confidence            99988877642  2   334557776 5644444 4688999999987643111111000      01123467999999


Q ss_pred             CCCCEEEEecC
Q 047325          253 SSRSIVYCGSS  263 (368)
Q Consensus       253 ~~~~~l~~~~~  263 (368)
                      |+++.|+..+.
T Consensus       234 p~~~~lfVTGK  244 (262)
T 3nol_A          234 KEHHRLFVTGK  244 (262)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEECC
Confidence            98887766654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.63  E-value=2.2e-05  Score=61.66  Aligned_cols=200  Identities=7%  Similarity=0.073  Sum_probs=123.2

Q ss_pred             ecCCCEeEEEEcCCCCEEE-EEeCCCcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325          152 RHSDAVSCMSLDQDCGLLY-TASWDRTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  228 (368)
                      +-.+.+..++++|+++.|+ +...++.|...|+. ++.+..+.-. ....-.+++.+++ ++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            3456799999999766555 56778899999987 8888777532 2457788888888 44555567899999887553


Q ss_pred             CCcccccce-e--eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC---ccccceee---------eccceEEEEEE
Q 047325          229 KGTKHSLAQ-T--LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHGGVL---------KGHKLAVLCLA  293 (368)
Q Consensus       229 ~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~---------~~~~~~~~~~~  293 (368)
                      ......... .  ..........++++|.++.|+++.+.....+|.++.   .... ...         .......+++.
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l-~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL-HISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC-EEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce-eeecchhhccccccCCceeEEEc
Confidence            210001110 0  112345578999999998888877766556655541   0001 111         01122345666


Q ss_pred             eC-CCEEEEeeCCCeEEEEecCCCceeeeEeee-cc------ccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          294 AA-GKLVFSGSADKTICVWRRDGAIHTCLSVLT-GH------TGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       294 ~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      |. +++++.......|.++|.... ......+. +.      -.....|+|.++|....++.. +.+|.+
T Consensus       182 p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f  249 (255)
T 3qqz_A          182 QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRF  249 (255)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEE
Confidence            64 567777777888999987654 22233333 22      125789999999985444322 344443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.57  E-value=0.00015  Score=61.40  Aligned_cols=246  Identities=10%  Similarity=0.042  Sum_probs=134.6

Q ss_pred             EEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCc
Q 047325           48 YSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        48 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~  122 (368)
                      .|.+..++ +|+.+. ...|+..++... ...+........+++|+  ++.|+.+ ...+.|..++++..........  
T Consensus        80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~--  156 (386)
T 3v65_B           80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST--  156 (386)
T ss_dssp             CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS--
T ss_pred             eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC--
Confidence            34444433 443333 356777777643 22222334457788887  4555544 4577888888776532111100  


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEE
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNS  201 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  201 (368)
                                                    .......+++.+.+..| ++-...+.|.+.++........+.........
T Consensus       157 ------------------------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g  206 (386)
T 3v65_B          157 ------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  206 (386)
T ss_dssp             ------------------------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred             ------------------------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence                                          11234568888755544 44445678888888654433333333456788


Q ss_pred             EEeCCCC-eEE-EEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc
Q 047325          202 VVSSSEG-LIF-TGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS  277 (368)
Q Consensus       202 ~~~~~~~-~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~  277 (368)
                      +++.|.+ .|+ +-... +.|..+++.....      .......-.....++++|++..|+ +-...+.|..+|+.....
T Consensus       207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             EEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            9999755 444 43344 7888888764311      111122234578999998666554 445567899999875322


Q ss_pred             cceeee---ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          278 HGGVLK---GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       278 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      . ....   .++.. +++ ..+.++++-...+.|..++..++  .....+........+|++.
T Consensus       281 ~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G--~~~~~i~~~~~~p~gi~v~  338 (386)
T 3v65_B          281 K-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTG--KNQEIIRNKLHFPMDIHTL  338 (386)
T ss_dssp             E-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTC--CSCEEEECSCSCCCCEEEE
T ss_pred             E-EEEECCCCCceE-EEE-ECCEEEEeeCCCCeEEEEECCCC--cceEEEccCCCCCceEEEE
Confidence            2 1221   22222 333 45556666667788888874333  2333333333344555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.56  E-value=0.00017  Score=58.93  Aligned_cols=223  Identities=13%  Similarity=0.091  Sum_probs=122.9

Q ss_pred             CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325           83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM  160 (368)
Q Consensus        83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (368)
                      .....++++  ++.+++-..++.|..||.+.... ..                                 .........+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~---------------------------------~~~~~~p~gi   77 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IH---------------------------------ATVEGKVSGL   77 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EE---------------------------------EECSSEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EE---------------------------------EeCCCCceeE
Confidence            345677776  55455555778888887654311 00                                 0022357789


Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeec-CCCceEEEEeCCCCe-EEEEcCCCeEEEEEcCCCCCCcc--cc
Q 047325          161 SLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSA-HDDAVNSVVSSSEGL-IFTGSADGTVKVWKREQHGKGTK--HS  234 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~--~~  234 (368)
                      ++.++++++++.....  .|..+|..+++....... .......++..+++. +++-..++.|..+|.........  ..
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~  157 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP  157 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence            9999998665554322  477778777775433321 122334555555664 44444688999998754210000  00


Q ss_pred             cce--eeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCC-cccc-ceeee-ccceEEEEEEeCCCEEEEeeCCCeE
Q 047325          235 LAQ--TLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREK-QLSH-GGVLK-GHKLAVLCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       235 ~~~--~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i  308 (368)
                      ...  .....-.....+  +|+++.|+ +-...+.|..|++.. +... ...+. .....-++++++|+++++....+.|
T Consensus       158 ~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          158 MLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             GGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeE
Confidence            000  000111234445  77777554 445678899999874 2211 11111 1111226677889888877778899


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEe---cCCee
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVE---EDRDS  342 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~  342 (368)
                      .+++.+.. ...+..+.......++++|.   |++..
T Consensus       236 ~~~~~~G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~~  271 (306)
T 2p4o_A          236 VRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTA  271 (306)
T ss_dssp             EEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             EEECCCCC-EEEEeecccccCCceEEEEecccCCCCE
Confidence            99986532 22232333333568999998   78653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.56  E-value=0.00022  Score=59.48  Aligned_cols=229  Identities=10%  Similarity=0.049  Sum_probs=129.2

Q ss_pred             CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCcccccc
Q 047325           45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      +...|.+..++ +|+.+. ...|+..++... ...+........+++|+  ++.|+.+ ...+.|..++++.........
T Consensus        34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            33456555444 443333 345777776643 22222233457888887  4555544 457888888887654211110


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCc
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDA  198 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  198 (368)
                      .                                .......+++.+.+..| ++-...+.|.+.++........+......
T Consensus       113 ~--------------------------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~  160 (349)
T 3v64_C          113 T--------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEK  160 (349)
T ss_dssp             S--------------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSC
T ss_pred             C--------------------------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCC
Confidence            0                                11234678888755544 44455678999998654433333333456


Q ss_pred             eEEEEeCCCC--eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCC
Q 047325          199 VNSVVSSSEG--LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREK  274 (368)
Q Consensus       199 v~~~~~~~~~--~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~  274 (368)
                      ...+++.|.+  ++++-... +.|...++.....      .......-.....++++|++..|+. -...+.|..+|+..
T Consensus       161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            7899999854  44444444 7888888764311      1111122345789999986665554 44567899999875


Q ss_pred             ccccceee---eccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          275 QLSHGGVL---KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       275 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .... ...   ..++.. +++ ..+.++++-...+.|..++..+
T Consensus       235 ~~~~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          235 SHRK-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             CSCE-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             CceE-EEEeCCCCCceE-EEE-ECCEEEEecCCCCeEEEEEccC
Confidence            3222 111   122222 333 4555566666678888887433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=3.5e-05  Score=59.67  Aligned_cols=193  Identities=8%  Similarity=0.037  Sum_probs=117.4

Q ss_pred             CceeeeccCcCCc--EEEEEecCC-EEEEccCC--CcEEEEcCCcc--eecccCCCC-CeeEEEEeCCEEEEEe-CCCeE
Q 047325           34 NGLIGSLVREEGH--IYSLAASKD-LLYTGSDS--KNIRVWKNLKE--FCGFKASSG-LVKAIVISGEKIFTGH-QDGKI  104 (368)
Q Consensus        34 ~~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~d--g~i~iw~~~~~--~~~~~~~~~-~v~~~~~~~~~l~s~~-~dg~i  104 (368)
                      .+++.++ .|...  ...|.|+++ +..+.+.+  ..|+.+|+.+.  +........ .-..+.+.++.|+... .++.+
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             eEEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            3455665 55433  668999888 44555554  48999998754  222222222 2245666666665554 68899


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      .++|..+.+........                                 ..=..++  ++++.|+.+..++.|.++|..
T Consensus        88 ~v~D~~tl~~~~ti~~~---------------------------------~~Gwglt--~dg~~L~vSdgs~~l~~iDp~  132 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYP---------------------------------GEGWALT--SDDSHLYMSDGTAVIRKLDPD  132 (243)
T ss_dssp             EEEETTTTEEEEEEECS---------------------------------SCCCEEE--ECSSCEEEECSSSEEEEECTT
T ss_pred             EEEECCcCcEEEEEeCC---------------------------------CCceEEe--eCCCEEEEECCCCeEEEEeCC
Confidence            99999887754433321                                 1112333  456677777778999999999


Q ss_pred             CCeEEEEeecCC-----CceEEEEeCCCCeE-EEEcCCCeEEEEEcCCCCCCcccccceee-------ccccccEEEEEE
Q 047325          185 DSKCLESVSAHD-----DAVNSVVSSSEGLI-FTGSADGTVKVWKREQHGKGTKHSLAQTL-------LKQECAVTALVV  251 (368)
Q Consensus       185 ~~~~~~~~~~~~-----~~v~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~  251 (368)
                      +.+.+..+.-..     ..++.+.+. +|.+ +..-.+..|.+.|.+++............       .....-.+.|++
T Consensus       133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~  211 (243)
T 3mbr_X          133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF  211 (243)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred             CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence            998888776421     245566665 5544 44445779999999876431111100000       112346799999


Q ss_pred             cCCCCEEEEecC
Q 047325          252 SSSRSIVYCGSS  263 (368)
Q Consensus       252 ~~~~~~l~~~~~  263 (368)
                      +|+++.|+..+.
T Consensus       212 d~~~~~lfVTGK  223 (243)
T 3mbr_X          212 DAEHDRLFVTGK  223 (243)
T ss_dssp             ETTTTEEEEEET
T ss_pred             cCCCCEEEEECC
Confidence            998776665543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.41  E-value=3.7e-05  Score=68.76  Aligned_cols=193  Identities=8%  Similarity=0.016  Sum_probs=107.9

Q ss_pred             cCCEEEEccC-CCcEEEEcC-Cccee--cccCCCC-----------CeeEEEE--eCCE----EEEEeCCCeEEEEeecC
Q 047325           53 SKDLLYTGSD-SKNIRVWKN-LKEFC--GFKASSG-----------LVKAIVI--SGEK----IFTGHQDGKIRVWKISP  111 (368)
Q Consensus        53 ~~~~l~s~~~-dg~i~iw~~-~~~~~--~~~~~~~-----------~v~~~~~--~~~~----l~s~~~dg~i~vw~~~~  111 (368)
                      .++.++.++. ++.|.-+|. .+...  .+.....           ....+.+  .+..    ++.++.|+.|..+|..+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            3556666666 788888887 54322  2211110           0123445  4555    88899999999999999


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------CCCcEEEEEccC
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------WDRTFKVWRISD  185 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~  185 (368)
                      ++.............                       +.-...++    +. ++ .+++++      .++.|+.+|..+
T Consensus       141 G~~~W~~~~~~~~~~-----------------------~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~T  191 (599)
T 1w6s_A          141 GETVWKVENSDIKVG-----------------------STLTIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKT  191 (599)
T ss_dssp             CCEEEEEECCCGGGT-----------------------CBCCSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTT
T ss_pred             CCEEEeecCCCCCcc-----------------------ceeecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCC
Confidence            987655432210000                       00011111    11 23 455554      379999999999


Q ss_pred             CeEEEEeecCCCce--------------------------------------EEEEeCCCC-eEEEEcCC----------
Q 047325          186 SKCLESVSAHDDAV--------------------------------------NSVVSSSEG-LIFTGSAD----------  216 (368)
Q Consensus       186 ~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~-~l~~~~~d----------  216 (368)
                      |+.+-.+.......                                      ..+++.++. .++.+..+          
T Consensus       192 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~  271 (599)
T 1w6s_A          192 GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRP  271 (599)
T ss_dssp             CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred             CcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccC
Confidence            99887765332110                                      012333333 66666654          


Q ss_pred             ------CeEEEEEcCCCCCCcccccceeeccc--------cccEEEEEEc-CCC---CEEEEecCCCcEEEEeCCCcccc
Q 047325          217 ------GTVKVWKREQHGKGTKHSLAQTLLKQ--------ECAVTALVVS-SSR---SIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       217 ------g~i~i~d~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                            +.|.-+|.+++.....    .....|        ..++. +... .++   +.++.++.+|.++++|.++++.+
T Consensus       272 gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          272 GDNKWTMTIFGRDADTGEAKFG----YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             SCCTTSSEEEEEETTTCCEEEE----EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCccccceEEEEeCCCCceeeE----eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                  3788889887643111    111111        12222 2222 466   46777889999999999887655


Q ss_pred             c
Q 047325          279 G  279 (368)
Q Consensus       279 ~  279 (368)
                      .
T Consensus       347 w  347 (599)
T 1w6s_A          347 S  347 (599)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.36  E-value=0.00023  Score=63.71  Aligned_cols=67  Identities=13%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             cCCEEEEccCCCcEEEEcCCccee--cccCCCCC---------eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGL---------VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~---------v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      .++.++.++.++.|.-+|..+...  .+......         ...+.+.++.++.++.|+.|..+|..+++......
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            345555555534477788764322  22211110         12334568889999999999999999998765543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=0.00086  Score=57.03  Aligned_cols=243  Identities=10%  Similarity=0.048  Sum_probs=134.3

Q ss_pred             EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      +|+.+. ...|+..++... ...+......+.+++|+  ++.|+.+ ...+.|..+++.........             
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-------------  150 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-------------  150 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-------------
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-------------
Confidence            444333 367888887643 22333445677889998  4555555 45678888887653210000             


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-e
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L  209 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  209 (368)
                                     .............+++.+.+. ++++-...+.|.+.++........+.........+++.|.+ .
T Consensus       151 ---------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~  215 (400)
T 3p5b_L          151 ---------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  215 (400)
T ss_dssp             ---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE
T ss_pred             ---------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe
Confidence                           000001224567899988444 44554567889999987655544444444557899998854 5


Q ss_pred             EEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeec--
Q 047325          210 IFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKG--  284 (368)
Q Consensus       210 l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--  284 (368)
                      |+...  ..+.|...++.....      .......-.....|++++++..|+.+ ...+.|..+|+...... .....  
T Consensus       216 ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~  288 (400)
T 3p5b_L          216 MYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEK  288 (400)
T ss_dssp             EEEEECSSSCCEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSS
T ss_pred             EEEEeCCCCCEEEEEeCCCCcc------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCC
Confidence            54443  247888888764321      11112223467899999877766555 45678999998754332 22221  


Q ss_pred             cceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325          285 HKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV  336 (368)
Q Consensus       285 ~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~  336 (368)
                      .-..-..++.+ +.++++-...+.|..++..++  ..+..+........+|..
T Consensus       289 ~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G--~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          289 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG--SDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             TTSSEEEEEEETTEEEEEESSSCSEEEEESSSC--CCCEEEECSCSCEEEEEE
T ss_pred             CCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC--CceEEEecCCCCCceEEE
Confidence            11112334434 445556666788888875444  233333333334455543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.00084  Score=55.93  Aligned_cols=192  Identities=10%  Similarity=0.005  Sum_probs=111.4

Q ss_pred             CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ..+..++|++....|+.+. ..+.|..+++........+.........+++.+. + ++++-...+.|.+.++.....  
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence            4578899998666665554 5678999998766544433333344567888764 4 556666678999999874321  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEE-EecCC-CcEEEEeCCCccccceee-eccceEEEEEEeCCCEEEEe-eCCCe
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSD-GLVNFWEREKQLSHGGVL-KGHKLAVLCLAAAGKLVFSG-SADKT  307 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~  307 (368)
                          .......-.....++++|.+..|+ +-... +.|..+++.......... ......-+++++++..|+.+ ...+.
T Consensus       151 ----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          151 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             ----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence                111222334578999998655544 44444 788888887532221111 11223347788766655554 45678


Q ss_pred             EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      |..++++......+  +.........|++.. +.+..+..+..+++.+
T Consensus       227 I~~~~~dG~~~~~~--~~~~~~~P~giav~~-~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          227 IERANLDGSHRKAV--ISQGLPHPFAITVFE-DSLYWTDWHTKSINSA  271 (349)
T ss_dssp             EEEEETTSCSCEEE--ECSSCSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCceEEE--EeCCCCCceEEEEEC-CEEEEecCCCCeEEEE
Confidence            99999876432222  222344567788844 4433333333444333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.31  E-value=0.0005  Score=55.71  Aligned_cols=210  Identities=10%  Similarity=0.093  Sum_probs=121.1

Q ss_pred             CCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325           80 ASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA  156 (368)
Q Consensus        80 ~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (368)
                      ...-.-.++.|+  ...++.++ ..|+|..|+...+..... .........                        .....
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~   64 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQ   64 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEE
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcce
Confidence            333445577887  35666665 789999999875532211 111000000                        01113


Q ss_pred             EeEEEE---cCCCCEEEEEeC-------------CCcEEEEEcc---CCeEEEEee--c-----------CCCceEEEEe
Q 047325          157 VSCMSL---DQDCGLLYTASW-------------DRTFKVWRIS---DSKCLESVS--A-----------HDDAVNSVVS  204 (368)
Q Consensus       157 v~~~~~---~~~~~~l~~~~~-------------d~~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~  204 (368)
                      +..+.+   .|++.++++...             +..|..+|+.   +++.+....  .           .......++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            478999   688766665442             6789999998   777665443  1           1134789999


Q ss_pred             CCCC-eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee
Q 047325          205 SSEG-LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       205 ~~~~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  282 (368)
                      .++| ..++++.. +.|...+...... ................+.|+++|+++.|++....|.+..+|+.+........
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~  223 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPV  223 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEEC
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecc
Confidence            9999 66667777 7777666653210 0000000011122346789999999988888779999999988533200111


Q ss_pred             e--c------cceEEEEEEeCCCE-EEEeeCCCeEEEEecCC
Q 047325          283 K--G------HKLAVLCLAAAGKL-VFSGSADKTICVWRRDG  315 (368)
Q Consensus       283 ~--~------~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~  315 (368)
                      .  +      ....++....+|+. |++....+.+.+.+.+.
T Consensus       224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          224 KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            1  1      12222344457887 55555666666665444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=5.6e-05  Score=70.01  Aligned_cols=154  Identities=13%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             CEeEEEEc-CCCCEEEEEeC-CC----cEEEEEccCC-eEEE-EeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEE
Q 047325          156 AVSCMSLD-QDCGLLYTASW-DR----TFKVWRISDS-KCLE-SVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKV  221 (368)
Q Consensus       156 ~v~~~~~~-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i  221 (368)
                      .+...+|+ |||++|+-+.. +|    .|+++|+.++ +.+. .+.   .....+.|+||+ .|+....+     ..|+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998875543 33    4999999988 6321 121   113467899998 55555544     35777


Q ss_pred             EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccc-c--ceeeeccceEEEEEE-e
Q 047325          222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLS-H--GGVLKGHKLAVLCLA-A  294 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~--~~~~~~~~~~~~~~~-~  294 (368)
                      +++.+...  ....+.. .........+.|+||+++|+...   ....|+++|+.++.. .  ............... .
T Consensus       252 ~~lgt~~~--~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          252 HVMGKLQS--EDVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EETTSCGG--GCEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EECCCCch--hcEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            88765321  0011111 12223456789999999888655   334688889876521 1  122222223333343 3


Q ss_pred             CCCEEEE-eeCC----CeEEEEecCC
Q 047325          295 AGKLVFS-GSAD----KTICVWRRDG  315 (368)
Q Consensus       295 ~~~~l~~-~~~d----g~i~iw~~~~  315 (368)
                      +++.|+. ...+    ..|..+++++
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            3665444 3333    2566666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.28  E-value=0.001  Score=54.55  Aligned_cols=193  Identities=12%  Similarity=-0.002  Sum_probs=108.1

Q ss_pred             CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccC----CeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      .....++|++.++.|+.+ ..++.|..+++..    ......+...-.....+++.+ .+ .+++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456789999876655555 4568899999875    222222322223457788875 34 4555567889999998643


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-C-CcEEEEeCCCcccccee-eeccceEEEEEEeCCCEEEEee-
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-D-GLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGS-  303 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-  303 (368)
                      .      ..............++++|.+..|+.+.. . +.|..+++......... .......-+++++++..|+.+. 
T Consensus       110 ~------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          110 K------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             S------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             c------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            1      11111222345789999986665554443 3 68888887643221111 1112233477787766665554 


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEE
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWI  354 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~  354 (368)
                      ..+.|..+|++....+.+............|++.. +.+..+..+..++..
T Consensus       184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS  233 (316)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEE
Confidence            56789999987643333332212233467788864 444333333344433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.27  E-value=0.0014  Score=55.44  Aligned_cols=192  Identities=11%  Similarity=0.014  Sum_probs=110.5

Q ss_pred             CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      .....++|++.+..|+.+ ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++.....  
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--
Confidence            457889999866555554 45678999998766544444333334566777764 4 555666678888888764311  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEec-CC-CcEEEEeCCCccccceeee-ccceEEEEEEeCCCEEEEe-eCCCe
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SD-GLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG-SADKT  307 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~dg~  307 (368)
                          .......-.....++++|.+..|+... .. +.|..+++........... .....-+++++++..|+.+ ...+.
T Consensus       194 ----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          194 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             ----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             ----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence                111222334578999998666555443 44 6888888875432211111 1223347788766655544 45678


Q ss_pred             EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      |..++++......+  +.........|++..+ .+..+..+..+++.+
T Consensus       270 I~~~d~dG~~~~~~--~~~~~~~P~giav~~~-~ly~td~~~~~V~~~  314 (386)
T 3v65_B          270 IERANLDGSHRKAV--ISQGLPHPFAITVFED-SLYWTDWHTKSINSA  314 (386)
T ss_dssp             EEEECTTSCSCEEE--ECSSCSSEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCeeEEE--EECCCCCceEEEEECC-EEEEeeCCCCeEEEE
Confidence            99998875422222  2223445677888444 433333333444333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00047  Score=59.25  Aligned_cols=112  Identities=9%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             CCEeEEEEcCCCCEEEEEeCC-C----cEEEEEccCCeEE--EEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcC
Q 047325          155 DAVSCMSLDQDCGLLYTASWD-R----TFKVWRISDSKCL--ESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~  225 (368)
                      .....+++++++++|+++... +    .+...+. .+...  ..+.. ......+++.| ++ ++++-..++.|..++..
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            457789999999966666542 2    2344443 23211  22222 23456788899 66 45555567899999987


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCE-EEEecCCCcEEEEeCC
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSI-VYCGSSDGLVNFWERE  273 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~  273 (368)
                      ....    ..... .........++++|++++ +++-...+.|..++..
T Consensus       257 ~~~~----~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          257 TQET----TPLFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTEE----EEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCcE----EEEEE-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            4311    01111 112234678999999994 4555567889998765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.23  E-value=0.00099  Score=52.30  Aligned_cols=205  Identities=11%  Similarity=0.057  Sum_probs=121.8

Q ss_pred             eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCccee-ccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325           39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFC-GFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP  111 (368)
Q Consensus        39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~-~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~  111 (368)
                      .+.+-.+.+..++++++   ++++...++.|...|....+. .+. .-......|++.  +.++++.-.++.+.++++..
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            35555678999999853   555577788888888774322 221 122457777876  33445555678899998876


Q ss_pred             CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc---CCeE
Q 047325          112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS---DSKC  188 (368)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~  188 (368)
                      ............+                      .. ....+.....++++|.++.|+++.......+|.+.   ....
T Consensus       101 ~~~i~~~~~~~~~----------------------~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A          101 NSEVKILKKIKIP----------------------LQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             TCCEEEEEEEECC----------------------CS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             CCeeeeeeeeccc----------------------cc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            5421100000000                      00 00145567899999998888777766566666654   1111


Q ss_pred             EEEee-------cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cc------cccEEEEEEc
Q 047325          189 LESVS-------AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQ------ECAVTALVVS  252 (368)
Q Consensus       189 ~~~~~-------~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~------~~~i~~~~~~  252 (368)
                      +..+.       .+...+.+++++|..  +++.......+.++|.+.. .    .....+. +.      -.....|+|.
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~----~~~~~L~~g~~~l~~~~~qpEGia~d  232 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V----IGEMSLTKGSRGLSHNIKQAEGVAMD  232 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E----EEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E----EEEEEcCCccCCcccccCCCCeeEEC
Confidence            22221       123356788998876  7777778889999997642 1    1111111 11      1357899999


Q ss_pred             CCCCEEEEecCCCcEEEEeC
Q 047325          253 SSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       253 ~~~~~l~~~~~dg~i~i~d~  272 (368)
                      ++|++.++ ++-+.++.|..
T Consensus       233 ~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          233 ASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             TTCCEEEE-ETTTEEEEEEC
T ss_pred             CCCCEEEE-cCCceEEEEEe
Confidence            99985544 67677777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.23  E-value=0.00063  Score=55.13  Aligned_cols=199  Identities=5%  Similarity=0.008  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEE-eec----C--CCceEEEEe---CCCC-eEEEEc-----------
Q 047325          158 SCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLES-VSA----H--DDAVNSVVS---SSEG-LIFTGS-----------  214 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~-~l~~~~-----------  214 (368)
                      .+++|++....|+.++ ..+.|..||...+..... +..    .  ...+..+.+   .|++ ++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4689988666777776 689999999975543332 221    1  114578899   5778 444333           


Q ss_pred             --CCCeEEEEEcC---CCCCCcccccceeecc-------ccccEEEEEEcCCCCEEEEecCC-CcEEEEeCCCcccccee
Q 047325          215 --ADGTVKVWKRE---QHGKGTKHSLAQTLLK-------QECAVTALVVSSSRSIVYCGSSD-GLVNFWEREKQLSHGGV  281 (368)
Q Consensus       215 --~dg~i~i~d~~---~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  281 (368)
                        .+..|..+|+.   ++.......+.....+       .......++..++|+..++++.. +.|...+....... ..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-TF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-EE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-ee
Confidence              26789999998   4432111100000001       12358899999999999988888 88877776643211 11


Q ss_pred             eecc-------ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-ecc---ccCeeEE-EEecCCeeeecCCcc
Q 047325          282 LKGH-------KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGH---TGPVKCL-AVEEDRDSSSSTSSC  349 (368)
Q Consensus       282 ~~~~-------~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h---~~~v~~l-~~~~~~~~~~~~~~~  349 (368)
                      ....       ...-+.+.|++..|++...+|.|..+|+.......+..- .+.   -.....| ..-.+|+.++.+++.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence            1111       112367889999888887799999999875321012111 021   1223443 444577775555444


Q ss_pred             eEEEEEee
Q 047325          350 AQRWIVYS  357 (368)
Q Consensus       350 ~~~w~l~s  357 (368)
                      ...+.+.+
T Consensus       255 ~~~~~l~S  262 (334)
T 2p9w_A          255 PYAISFRS  262 (334)
T ss_dssp             TEEEEEEC
T ss_pred             CCEEEEEC
Confidence            44455554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.23  E-value=0.0015  Score=53.97  Aligned_cols=152  Identities=6%  Similarity=0.055  Sum_probs=81.9

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEE-EEc--cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKV-WRI--SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      ....+..+.+.+++.+++++. +|.+.. .|-  .+-+.+.  ......+..+.+.+++.++.++.+|.+++.+...+  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G--  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS--  235 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE--
T ss_pred             CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC--
Confidence            345678899999887776664 454444 342  2333332  23456788888988886666777888877642211  


Q ss_pred             Ccccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEe-CCCEEEEeeCC
Q 047325          230 GTKHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAA-AGKLVFSGSAD  305 (368)
Q Consensus       230 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~~~d  305 (368)
                       ........- ......+..+.+.+++..++++. +|.+. +..+.++.-.....  .....+.++.+ ++..+++++.+
T Consensus       236 -~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~  312 (327)
T 2xbg_A          236 -ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQK  312 (327)
T ss_dssp             -EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECST
T ss_pred             -CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCC
Confidence             111111110 01223588899998877776654 66663 33333322111110  11122222322 34556677788


Q ss_pred             CeEEEEe
Q 047325          306 KTICVWR  312 (368)
Q Consensus       306 g~i~iw~  312 (368)
                      |.|.-++
T Consensus       313 G~i~~~~  319 (327)
T 2xbg_A          313 GILLRYV  319 (327)
T ss_dssp             TEEEEEC
T ss_pred             ceEEEEc
Confidence            9877664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.19  E-value=0.0021  Score=54.59  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=107.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCC----eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~  225 (368)
                      ....+..++|++.+..|+.+. ..+.|+.+++...    .....+.........+++.+ .+ ++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345678999998666665554 5678888888652    22333333345567788876 44 55566678899999886


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEe
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~  302 (368)
                      ...      ........-.....++++|.+..|+...  ..+.|...++............ ....-+++++++..|+.+
T Consensus       190 g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          190 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             TCS------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCc------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence            431      1111222334578999999666555544  2478998888754332111111 223347788777666665


Q ss_pred             e-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          303 S-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       303 ~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      . ..+.|..+|++......+...........+|++..+.
T Consensus       264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~  302 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK  302 (400)
T ss_dssp             ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTE
T ss_pred             ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCE
Confidence            4 5678999998765433333322223445677775443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.19  E-value=0.0017  Score=53.26  Aligned_cols=216  Identities=9%  Similarity=0.036  Sum_probs=120.0

Q ss_pred             CCcEEEEcCCcce---ecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325           63 SKNIRVWKNLKEF---CGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP  136 (368)
Q Consensus        63 dg~i~iw~~~~~~---~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (368)
                      ...|+..++....   ...........+++|+  ++.|+ +-...+.|..++++.......                   
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-------------------   72 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-------------------   72 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-------------------
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-------------------
Confidence            3567777776431   1111122345677887  34444 445577888888765531100                   


Q ss_pred             CceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325          137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS  214 (368)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~  214 (368)
                                  ...........+++.+.+. ++++-...+.|.++++........+.........+++.|.+ .|+.+.
T Consensus        73 ------------~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           73 ------------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             ------------EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             ------------EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence                        0001123456788887544 44444556789999986543333333344567889998854 555444


Q ss_pred             --CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325          215 --ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLC  291 (368)
Q Consensus       215 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  291 (368)
                        ..+.|...++.....      .......-.....++++|++..|+. -...+.|..+|+...... .........-..
T Consensus       141 ~~~~~~I~r~~~dG~~~------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~g  213 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFA  213 (318)
T ss_dssp             CSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEE
T ss_pred             cCCCCEEEEEEcCCCCe------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceE
Confidence              357888888764311      1111122345689999996665554 456678999998743222 122211111223


Q ss_pred             EEe-CCCEEEEeeCCCeEEEEecCCC
Q 047325          292 LAA-AGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       292 ~~~-~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ++. .+.++++-...+.|..++..++
T Consensus       214 lav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          214 LTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEeCCEEEEEecCCCeEEEEECCCC
Confidence            333 3445556556788998887544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.10  E-value=0.00014  Score=66.27  Aligned_cols=182  Identities=12%  Similarity=0.078  Sum_probs=93.3

Q ss_pred             EeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEc-CC-----CeEEEEEcCCC
Q 047325          157 VSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGS-AD-----GTVKVWKREQH  227 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~-~d-----g~i~i~d~~~~  227 (368)
                      ..++++..++++++.|+. +..+.+||..+.+-...-..+... -.+++..+++ .++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            345677788999999884 458999999877543322212111 2344555566 666776 34     56899998754


Q ss_pred             CCCcccccc---eeeccccccEEEEEEcCCCCEEEEecCC---------CcEEEEeCCCccccceeeecc----------
Q 047325          228 GKGTKHSLA---QTLLKQECAVTALVVSSSRSIVYCGSSD---------GLVNFWEREKQLSHGGVLKGH----------  285 (368)
Q Consensus       228 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~----------  285 (368)
                      .-  .....   ..+.....   ...+..++..++.|+.+         ..+..||..+..... ....+          
T Consensus       325 ~W--~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          325 TW--TSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDA  398 (656)
T ss_dssp             EE--EEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCC
T ss_pred             cc--eeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCC
Confidence            21  00000   00000000   01122344544555444         356788877543221 11111          


Q ss_pred             -ceEEEEEE-eCCCEEEEeeCCC-----------eEEEEecCCCceeeeE--eeeccccC-eeEEEEecCCeeeecC
Q 047325          286 -KLAVLCLA-AAGKLVFSGSADK-----------TICVWRRDGAIHTCLS--VLTGHTGP-VKCLAVEEDRDSSSST  346 (368)
Q Consensus       286 -~~~~~~~~-~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~--~~~~h~~~-v~~l~~~~~~~~~~~~  346 (368)
                       ......+. .++++++.|+.++           .|.+||..+.....+.  .+  +... -.+++..|++++++.+
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m--p~~R~~~~~~~l~~g~i~v~G  473 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL--YFARTFHTSVVLPDGSTFITG  473 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC--SSCCBSCEEEECTTSCEEEEC
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC--CCCcccCCeEECCCCCEEEEC
Confidence             11222222 3688888888543           6778877665443332  11  1222 2345666788855444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.09  E-value=0.0029  Score=52.19  Aligned_cols=260  Identities=7%  Similarity=-0.015  Sum_probs=125.4

Q ss_pred             CCcEEEEEec-CC-EEEEccCCCcEEEEcCC-cc--eecc--cCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccc
Q 047325           44 EGHIYSLAAS-KD-LLYTGSDSKNIRVWKNL-KE--FCGF--KASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        44 ~~~i~~~~~~-~~-~l~s~~~dg~i~iw~~~-~~--~~~~--~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      ...+.+|.|. ++ .++ ++.+|.|....-. +.  ....  ......+.++.+.++.++.++.+|.|.. ..+.++.-.
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~  112 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWS  112 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCE
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCCce
Confidence            3468889885 33 555 4556765332211 11  1111  1234568889888666666666775543 222232111


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecC
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAH  195 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~  195 (368)
                      ......                             .+...+..+.+.+++..++++ .++.|..- ...++.-... ...
T Consensus       113 ~~~~~~-----------------------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~  161 (327)
T 2xbg_A          113 QIPLDP-----------------------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEA  161 (327)
T ss_dssp             ECCCCT-----------------------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSC
T ss_pred             ECcccc-----------------------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCC
Confidence            111000                             022335566666666555544 45654321 1223222222 234


Q ss_pred             CCceEEEEeCCCCeEEEEcCCCeEEEE-EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          196 DDAVNSVVSSSEGLIFTGSADGTVKVW-KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       196 ~~~v~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      ...+..+.+.+++.++..+.+|.+..- |-  ++.  .....  .......+..+.+.++++.++. +.+|.+++.+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~--tW~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~  234 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQT--AWEPH--NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN  234 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCS--SCEEE--ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCC--ceeEC--CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence            557889999998844444455555443 32  011  11111  1234456888999998876654 4578777764322


Q ss_pred             ccccceeeec---cceEEEEEEe--CCCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          275 QLSHGGVLKG---HKLAVLCLAA--AGKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       275 ~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      +..-......   +...+.++.+  ++.+++++ .+|.|. +..+.+ ....+.........+.++.|.+++..++.
T Consensus       235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~  309 (327)
T 2xbg_A          235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL  309 (327)
T ss_dssp             EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred             CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence            2211111111   1123444443  55555554 477663 333432 22222111123456888999877764433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.09  E-value=0.0018  Score=52.66  Aligned_cols=152  Identities=11%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCCCCCc
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQHGKGT  231 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~  231 (368)
                      +++.++.|+.+     ..+.+||+.+.+-..  .+......-.++..  ++ .++.|+.+     ..+.+||+.+..-  
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW--  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--
Confidence            45666666643     368899988765332  22211111122222  44 56666554     4688899875421  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCC
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                        ...............+.+  ++++++.|+.+     ..+.+||+++..-... ..........+...++++++.|+.+
T Consensus       188 --~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  263 (301)
T 2vpj_A          188 --TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD  263 (301)
T ss_dssp             --EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             --EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcC
Confidence              111111111112222222  56777777764     4689999886432211 1111111112334578888888765


Q ss_pred             -----CeEEEEecCCCceeeeEee
Q 047325          306 -----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       306 -----g~i~iw~~~~~~~~~~~~~  324 (368)
                           ..+.+||+++.....+..+
T Consensus       264 ~~~~~~~v~~yd~~~~~W~~~~~~  287 (301)
T 2vpj_A          264 GNSLLSSIECYDPIIDSWEVVTSM  287 (301)
T ss_dssp             SSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCcccccEEEEcCCCCeEEEcCCC
Confidence                 4578888877765555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.08  E-value=0.0029  Score=51.91  Aligned_cols=215  Identities=11%  Similarity=0.057  Sum_probs=119.4

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY  139 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (368)
                      ..|+..|+... ...+........+++|+  ++.|+.+ ..++.|..++++........                     
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~---------------------   68 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------------   68 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------------
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc---------------------
Confidence            45777776643 22222234557788887  4555544 45688998888752100000                     


Q ss_pred             eEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-C
Q 047325          140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-D  216 (368)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d  216 (368)
                             .............+++.+.+..| ++-...+.|.+.|+........+.........+++.|.+ .|+.+.. .
T Consensus        69 -------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           69 -------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             -------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             -------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence                   00000011345678898755544 444567899999987544433343334567899999854 4444443 3


Q ss_pred             -CeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeee-----ccceE
Q 047325          217 -GTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLK-----GHKLA  288 (368)
Q Consensus       217 -g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~  288 (368)
                       +.|...++....       ...+ ...-.....+++++++..|+.+ ...+.|..+|+...... ....     .|+..
T Consensus       142 ~~~I~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P~g  213 (316)
T 1ijq_A          142 PAKIKKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFS  213 (316)
T ss_dssp             SCEEEEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEE
T ss_pred             CCeEEEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCcEE
Confidence             788888875321       1111 1223457899999876665544 45678999998753221 1211     12222


Q ss_pred             EEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          289 VLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                       +++ ..+.++++-...+.|..++..++
T Consensus       214 -iav-~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          214 -LAV-FEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             -EEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             -EEE-ECCEEEEEECCCCeEEEEeCCCC
Confidence             333 24555556666788988886544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.05  E-value=0.0046  Score=53.09  Aligned_cols=193  Identities=8%  Similarity=0.077  Sum_probs=107.9

Q ss_pred             cEEEEEecC----CEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCC----e-EEEEeecCCC
Q 047325           46 HIYSLAASK----DLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDG----K-IRVWKISPKN  113 (368)
Q Consensus        46 ~i~~~~~~~----~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg----~-i~vw~~~~~~  113 (368)
                      ....|++++    ..|+.+...+.|+.+|.. ..+..+.........++++  ++ |+.+...+    . +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            345778875    345444444889999884 3444444445567888887  55 55554322    1 2222211110


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      . .                              ...+ ........++++| ++.++++-..++.|+.+|..++.....+
T Consensus       219 ~-~------------------------------~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~  266 (433)
T 4hw6_A          219 T-E------------------------------RLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE  266 (433)
T ss_dssp             C-C------------------------------EEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE
T ss_pred             e-c------------------------------cccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE
Confidence            0 0                              0000 0223446688999 6665555556788999999877653222


Q ss_pred             -ec-CCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeecc---------------ccccEEEEEE--
Q 047325          193 -SA-HDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLK---------------QECAVTALVV--  251 (368)
Q Consensus       193 -~~-~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~--  251 (368)
                       .. ....-..++++|++ .|+ +-...+.|+.++........  .....+.+               .-.....+++  
T Consensus       267 ~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~  344 (433)
T 4hw6_A          267 VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL--AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK  344 (433)
T ss_dssp             EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB--CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred             eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc--CcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence             21 12223469999998 344 44557899998875321100  00000000               1123667888  


Q ss_pred             -------cCCCCEEEEecCCCcEEEEeCC
Q 047325          252 -------SSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       252 -------~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                             .+++++.++-...+.|+.++..
T Consensus       345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          345 NEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             CGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             cccccccCCCCcEEEEECCCCEEEEECCC
Confidence                   7777777777777889998853

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.04  E-value=0.0023  Score=52.14  Aligned_cols=156  Identities=9%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CCCEEEEEeCC------CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCC-eEEEEcC---------CCeEEEEEcCC
Q 047325          165 DCGLLYTASWD------RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEG-LIFTGSA---------DGTVKVWKREQ  226 (368)
Q Consensus       165 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~---------dg~i~i~d~~~  226 (368)
                      ++++++.|+.+      ..+.+||+.+.+-...  +......-.++. . ++ .++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            55667777654      4688999887653322  211111112222 2 44 5555543         34588899875


Q ss_pred             CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEE
Q 047325          227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVF  300 (368)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  300 (368)
                      ..    ................+.+  ++++++.|+.+     ..+.+||+.+..-.. ...........+...++++++
T Consensus       179 ~~----W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v  252 (306)
T 3ii7_A          179 ET----WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYV  252 (306)
T ss_dssp             TE----EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEE
T ss_pred             Ce----EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEE
Confidence            42    1111111111112222222  56677777654     358899987643211 111111111223334788888


Q ss_pred             EeeCC-----CeEEEEecCCCceeeeEeeeccc
Q 047325          301 SGSAD-----KTICVWRRDGAIHTCLSVLTGHT  328 (368)
Q Consensus       301 ~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~  328 (368)
                      .|+.+     ..+.+||..+.....+..+....
T Consensus       253 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  285 (306)
T 3ii7_A          253 LAGFQGVGRLGHILEYNTETDKWVANSKVRAFP  285 (306)
T ss_dssp             EECBCSSSBCCEEEEEETTTTEEEEEEEEECCS
T ss_pred             EeCcCCCeeeeeEEEEcCCCCeEEeCCCccccc
Confidence            88854     56889999887777666554333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.005  Score=52.87  Aligned_cols=148  Identities=7%  Similarity=-0.003  Sum_probs=86.8

Q ss_pred             EEEEEecC---CEEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCC-C----eEEEEeecCCCcc
Q 047325           47 IYSLAASK---DLLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQD-G----KIRVWKISPKNQS  115 (368)
Q Consensus        47 i~~~~~~~---~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g----~i~vw~~~~~~~~  115 (368)
                      ...|++++   ..|+.+...+.|+.+|+.. .+..+.........++++  +++|+.+... +    .+.+.+. .+...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence            45677774   2455444447888888875 334444445567788887  6656666542 1    2322332 22110


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (368)
                      ..                              ..+. .......++++| ++.++++-..++.|..+|...+........
T Consensus       218 ~~------------------------------~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~  266 (430)
T 3tc9_A          218 VI------------------------------TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI  266 (430)
T ss_dssp             SE------------------------------EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ee------------------------------eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence            00                              0000 123346788999 666666655678999999987765332222


Q ss_pred             -CCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCC
Q 047325          195 -HDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQ  226 (368)
Q Consensus       195 -~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~  226 (368)
                       .......++++|++ .| ++-...+.|..++.+.
T Consensus       267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence             22346789999999 34 4445678999988753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.01  E-value=0.0026  Score=59.00  Aligned_cols=189  Identities=14%  Similarity=0.110  Sum_probs=98.9

Q ss_pred             cEEEEEec-CC--EEEEc-cCC----CcEEEEcCCcc-eecccCC-CCCeeEEEEe--CCEEEEEeCC-----CeEEEEe
Q 047325           46 HIYSLAAS-KD--LLYTG-SDS----KNIRVWKNLKE-FCGFKAS-SGLVKAIVIS--GEKIFTGHQD-----GKIRVWK  108 (368)
Q Consensus        46 ~i~~~~~~-~~--~l~s~-~~d----g~i~iw~~~~~-~~~~~~~-~~~v~~~~~~--~~~l~s~~~d-----g~i~vw~  108 (368)
                      .+...+++ ++  +||-+ ..+    .+|+++|+.+. .. +... ......+.|+  ++.|+....|     ..|.+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            46667777 65  55532 222    35999998765 31 1111 1113456676  6677666654     2466666


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee-ecCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEcc
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI-RHSDAVSCMSLDQDCGLLYTASW---DRTFKVWRIS  184 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~  184 (368)
                      +.++.....                              .++. ........+.|+||+++|+..+.   ...|.++|+.
T Consensus       254 lgt~~~~~~------------------------------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          254 MGKLQSEDV------------------------------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             TTSCGGGCE------------------------------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             CCCCchhcE------------------------------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            655431100                              0111 02234567899999998877653   3468889987


Q ss_pred             CC--eE--EEEeecCCCceEEEEeCCCC-eEEEEcCC----CeEEEEEcCCCCCCccccccee-eccc--cccEEEEEEc
Q 047325          185 DS--KC--LESVSAHDDAVNSVVSSSEG-LIFTGSAD----GTVKVWKREQHGKGTKHSLAQT-LLKQ--ECAVTALVVS  252 (368)
Q Consensus       185 ~~--~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~-~~~~--~~~i~~~~~~  252 (368)
                      ++  +.  .............+.|+.++ +++....+    ..|..+|+.....      ... +..+  ...+..+.+.
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~  377 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR  377 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC
T ss_pred             CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE
Confidence            75  23  22233344555666655555 44444433    3666777653211      111 1122  2245556554


Q ss_pred             CCCCEEEEecCCCc--EEEEeC
Q 047325          253 SSRSIVYCGSSDGL--VNFWER  272 (368)
Q Consensus       253 ~~~~~l~~~~~dg~--i~i~d~  272 (368)
                       .+.++++...++.  |.++++
T Consensus       378 -~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          378 -SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             -SSEEEEEEEETTEEEEEEEEC
T ss_pred             -CCEEEEEEEeCCEEEEEEEec
Confidence             3345566667775  455664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.001  Score=57.22  Aligned_cols=153  Identities=9%  Similarity=0.052  Sum_probs=92.1

Q ss_pred             CEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCC-----eEEEEEcCCCC
Q 047325          156 AVSCMSLDQD--CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADG-----TVKVWKREQHG  228 (368)
Q Consensus       156 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  228 (368)
                      ....++++|+  ...|+.+...+.|+.+|+.+++...... .......+++.+++.|+.+...+     .+...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984  4566666555899999998877655443 44567899999999444444321     23333332110


Q ss_pred             CCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeee--c-cceEEEEEEeCCCEEEEe-e
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLK--G-HKLAVLCLAAAGKLVFSG-S  303 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~-~  303 (368)
                      .     ....+. .-.....++++| ++++.++-..++.|+.+|..++........  . ....-++++++++.|+.+ .
T Consensus       219 ~-----~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          219 T-----ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             C-----CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             e-----cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            0     001111 123346688899 677666666778899999875543111111  1 111237788899855544 5


Q ss_pred             CCCeEEEEecCC
Q 047325          304 ADKTICVWRRDG  315 (368)
Q Consensus       304 ~dg~i~iw~~~~  315 (368)
                      ..+.|+.++++.
T Consensus       293 ~~~~I~~~~~d~  304 (433)
T 4hw6_A          293 GKHCIYRVDYNR  304 (433)
T ss_dssp             TTTEEEEEEBCT
T ss_pred             CCCEEEEEeCCC
Confidence            578899988763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.95  E-value=0.012  Score=54.47  Aligned_cols=218  Identities=11%  Similarity=0.049  Sum_probs=121.2

Q ss_pred             CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325           64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY  139 (368)
Q Consensus        64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (368)
                      ..|+..++... ...+......+.+|+++  ++.|+ +-...+.|+.+++.........                     
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~---------------------  462 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------------  462 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------------
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce---------------------
Confidence            45777776532 22333345567788887  44444 4445678888887653210000                     


Q ss_pred             eEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEc-C-
Q 047325          140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGS-A-  215 (368)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~-  215 (368)
                             ..+..........|++.+.+..|+.+ ...+.|.+.++........+.........|++.|. +.|+.+. . 
T Consensus       463 -------~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          463 -------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             -------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             -------eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence                   00001122445678998876555544 55788999998755544444444456789999886 4555443 2 


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeec--cceEEEEE
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKG--HKLAVLCL  292 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~  292 (368)
                      .+.|...++.....      .......-.....|++++.+..|+.+ ...+.|..+++...... .....  .-..-..+
T Consensus       536 ~~~I~~~~~dG~~~------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~gl  608 (791)
T 3m0c_C          536 PAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL  608 (791)
T ss_dssp             SCEEEEEETTSCCE------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEE
T ss_pred             CCeEEEEecCCCce------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEE
Confidence            37888888864311      11122233568899999766665555 45568999998754332 22221  11122345


Q ss_pred             EeCCCEEE-EeeCCCeEEEEecCCC
Q 047325          293 AAAGKLVF-SGSADKTICVWRRDGA  316 (368)
Q Consensus       293 ~~~~~~l~-~~~~dg~i~iw~~~~~  316 (368)
                      +..+..|+ +-...+.|...+..++
T Consensus       609 av~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          609 AVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCEEEEEECCCCEEEEEeCCCC
Confidence            54444444 4445677887775444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.93  E-value=0.0057  Score=50.08  Aligned_cols=146  Identities=13%  Similarity=0.261  Sum_probs=88.0

Q ss_pred             CCcEEEEEc--cCCeEEEEeec------CC-CceEEEEe--CCC-C--eEEEEcCCCeEEEEEcCCCCCC-cccccceee
Q 047325          175 DRTFKVWRI--SDSKCLESVSA------HD-DAVNSVVS--SSE-G--LIFTGSADGTVKVWKREQHGKG-TKHSLAQTL  239 (368)
Q Consensus       175 d~~i~iwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~  239 (368)
                      +++|.+|++  .+++ +..+..      .. ..+..+++  ++. +  ++++...+|.+..|++.....+ ...+.++.+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999976  3433 444421      11 44556666  664 4  6888899999999999643322 223334444


Q ss_pred             ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-----ccccceee-ecc---ceEEEEEEe--CCC-EEEEee-CCC
Q 047325          240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-----QLSHGGVL-KGH---KLAVLCLAA--AGK-LVFSGS-ADK  306 (368)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~-~~~---~~~~~~~~~--~~~-~l~~~~-~dg  306 (368)
                      .. .+.+..+...+....|+.+-++.-|..++.+.     .... ... .++   ...-+++-+  +++ +|++++ .++
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v-~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVI-DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEE-EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEE-EEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            33 45788999999889999999987777777552     1222 111 121   122344543  444 566555 678


Q ss_pred             eEEEEecCCCceeeeEee
Q 047325          307 TICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~  324 (368)
                      ++.+||.... .+.+..+
T Consensus       255 s~~Vydr~~~-~~~vg~f  271 (355)
T 3amr_A          255 SYAIYDRQGK-NKYVADF  271 (355)
T ss_dssp             EEEEEESSTT-CCEEEEE
T ss_pred             EEEEEECCCC-CcEEEEE
Confidence            9999998622 2444554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.91  E-value=0.014  Score=54.01  Aligned_cols=180  Identities=13%  Similarity=0.042  Sum_probs=103.7

Q ss_pred             cCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~  225 (368)
                      ....+..+++++....|+.+ ...+.|+.+++...    .....+.........|++.+.+  ++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34567789999865555544 45677888888642    2233333233455677777655  55666678899999987


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-C-CCcEEEEeCCCccccceeeec--cceEEEEEEeCCCEEEE
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-S-DGLVNFWEREKQLSHGGVLKG--HKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  301 (368)
                      ...      ........-.....|++.|....|+.+. . .+.|...++...... .....  ....-+++++.+..|+.
T Consensus       502 G~~------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          502 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCe------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence            431      1111222334578999999766555544 2 367888888754332 12221  22334677766666655


Q ss_pred             e-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          302 G-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       302 ~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      + ...+.|...+++......+..-...-....+|++..+
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~  613 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED  613 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC
Confidence            5 4567899998876533333221122234557777554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.89  E-value=0.016  Score=53.93  Aligned_cols=257  Identities=12%  Similarity=0.176  Sum_probs=142.6

Q ss_pred             CCcEEEEEecCC-EEEEccCCCcEEEEcCCccee--c-ccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325           44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFC--G-FKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHK  118 (368)
Q Consensus        44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~--~-~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~  118 (368)
                      ...|.++..+.+ +|..|..+| +..||-.+...  . .......|.++..+ ...|..|+.+| +..||..+.....  
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~--   96 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ--   96 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECC--
T ss_pred             cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC--
Confidence            467999998866 777777888 45567432111  0 11224568888776 66888888766 6788876543211  


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee----c
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS----A  194 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~  194 (368)
                      ...                              .....|.++.. .++ .|..++.+ -|..+|..+++......    .
T Consensus        97 ~~~------------------------------~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l  143 (758)
T 3ott_A           97 PET------------------------------DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGL  143 (758)
T ss_dssp             CSC------------------------------CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCC
T ss_pred             ccc------------------------------CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCc
Confidence            000                              01234666654 344 56667765 58889987665432201    1


Q ss_pred             CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          195 HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       195 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      ....|.++...+++.|..|+.+ .+..++...... ...............|.++...+++..|..|+. +-+..+|..+
T Consensus       144 ~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          144 PNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             SCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred             CCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence            2356888888888866666654 577888754311 000000000001234888888877776666664 4588888765


Q ss_pred             ccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeee-----ccccCeeEEEEecCCee
Q 047325          275 QLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLT-----GHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~  342 (368)
                      .... .........+.++..| ...|..|+.+ -+.+++..+..........     -....|.++....+|.+
T Consensus       221 ~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  292 (758)
T 3ott_A          221 GQIK-QTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI  292 (758)
T ss_dssp             TEEE-EEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred             CeEE-eccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence            4322 1111123446666665 3455556644 5778876554222111100     01235888888777754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.89  E-value=0.0037  Score=51.19  Aligned_cols=169  Identities=13%  Similarity=0.160  Sum_probs=98.8

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC----C----eEEEE-cC--CCeEEEEEcCCCCCCccc
Q 047325          165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE----G----LIFTG-SA--DGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~----~l~~~-~~--dg~i~i~d~~~~~~~~~~  233 (368)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    +    ++++. -.  +++|.+|++.....    
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence            3456777777889999999 8999988864  45666655442    2    22333 33  57999998742211    


Q ss_pred             ccceeec-------cccccEEEEEE--cCC-CC-EEEEecCCCcEEEEeCCC-------ccccceeeeccceEEEEEEeC
Q 047325          234 SLAQTLL-------KQECAVTALVV--SSS-RS-IVYCGSSDGLVNFWEREK-------QLSHGGVLKGHKLAVLCLAAA  295 (368)
Q Consensus       234 ~~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~  295 (368)
                       .+....       .....+..+|+  +|. +. ++++...+|.+..|++..       .+.......+....-+.+.+.
T Consensus       112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~  190 (355)
T 3amr_A          112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE  190 (355)
T ss_dssp             -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT
T ss_pred             -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC
Confidence             111111       11144566777  664 43 688888999999998842       222222223334444555667


Q ss_pred             CCEEEEeeCCCeEEEEecCCC---ceeeeEeee-ccc-cCeeEEEEe--cCCe
Q 047325          296 GKLVFSGSADKTICVWRRDGA---IHTCLSVLT-GHT-GPVKCLAVE--EDRD  341 (368)
Q Consensus       296 ~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~-~h~-~~v~~l~~~--~~~~  341 (368)
                      ...|+.+-+|.-|..++.+..   ....+..+. ++- ..+..|++-  +++.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence            889999999866544443322   224444432 222 368888884  4444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.89  E-value=0.0076  Score=50.19  Aligned_cols=229  Identities=10%  Similarity=0.085  Sum_probs=113.1

Q ss_pred             CeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           84 LVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        84 ~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      .-..++|. ...|+.+..+|.|.+++  +++........                           ++.........+++
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~---------------------------v~~~g~~~p~gia~   82 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELS---------------------------VYHRGESGLLGLAL   82 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECC---------------------------CCCSTTCSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecce---------------------------EeecCCCCceeEEE
Confidence            35677886 33466667789998887  33211000000                           00012346788999


Q ss_pred             cCC---CCEEEEEeCC------CcEEEEEccCCe-----EE-EEee---cCCCceEEEEeCCCCeEEEEcC---------
Q 047325          163 DQD---CGLLYTASWD------RTFKVWRISDSK-----CL-ESVS---AHDDAVNSVVSSSEGLIFTGSA---------  215 (368)
Q Consensus       163 ~~~---~~~l~~~~~d------~~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~l~~~~~---------  215 (368)
                      +|+   +..|+++...      +.|..++...+.     .+ ..+.   ........++|.|+|.|+.+..         
T Consensus        83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~  162 (352)
T 2ism_A           83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQ  162 (352)
T ss_dssp             CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGG
T ss_pred             CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcccc
Confidence            998   5555555432      568888876431     11 2233   1112346899999994444432         


Q ss_pred             -----CCeEEEEEcCCCCCCcc-------cccceeeccccccEEEEEEcC-CCCEEEEecCCCc--------EEEEeCCC
Q 047325          216 -----DGTVKVWKREQHGKGTK-------HSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGL--------VNFWEREK  274 (368)
Q Consensus       216 -----dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~  274 (368)
                           .|.|.-++....-....       ........++ .....++|+| ++++.++-...+.        |.+.....
T Consensus       163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~  241 (352)
T 2ism_A          163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG  241 (352)
T ss_dssp             CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC
T ss_pred             CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC
Confidence                 25666666542100000       0001111122 2356789999 5665554332222        33332111


Q ss_pred             c---------------cccceeeeccceEE-EEEEeCCCEEEEeeCCCeEEEEecCCCce----eeeEeeeccccCeeEE
Q 047325          275 Q---------------LSHGGVLKGHKLAV-LCLAAAGKLVFSGSADKTICVWRRDGAIH----TCLSVLTGHTGPVKCL  334 (368)
Q Consensus       275 ~---------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~l  334 (368)
                      .               ..+...+..|..+. +++ +++.++++.-..+.|...+++....    .....+..-...+.++
T Consensus       242 nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v  320 (352)
T 2ism_A          242 NYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREV  320 (352)
T ss_dssp             BCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEE
T ss_pred             cCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEE
Confidence            0               01111222222222 233 5777777766677888887754321    1112222223578999


Q ss_pred             EEecCCeee
Q 047325          335 AVEEDRDSS  343 (368)
Q Consensus       335 ~~~~~~~~~  343 (368)
                      ++.|||.+.
T Consensus       321 ~~~pdG~ly  329 (352)
T 2ism_A          321 QVGPDGALY  329 (352)
T ss_dssp             EECTTSCEE
T ss_pred             EECCCCcEE
Confidence            999999753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.86  E-value=0.0042  Score=50.67  Aligned_cols=152  Identities=13%  Similarity=0.112  Sum_probs=77.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC-----CeEEEEEcCCCCCCcc
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD-----GTVKVWKREQHGKGTK  232 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  232 (368)
                      +++.++.|+.+     ..+.+||+.+.+-...  +......-.++.+ .+..++.|+.+     ..+.+||+....-   
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEW---  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEE---
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeE---
Confidence            45566666533     4688999887653322  2111111122222 23356666554     4588899865421   


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCC-
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSAD-  305 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-  305 (368)
                       ...............+.+  ++++++.|+.+     ..+.+||+.+..-... ..........+...++++++.|+.+ 
T Consensus       197 -~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  273 (308)
T 1zgk_A          197 -RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  273 (308)
T ss_dssp             -EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             -eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence             111111111222222333  56777777654     5689999876432111 1111111112233478888888754 


Q ss_pred             ----CeEEEEecCCCceeeeEe
Q 047325          306 ----KTICVWRRDGAIHTCLSV  323 (368)
Q Consensus       306 ----g~i~iw~~~~~~~~~~~~  323 (368)
                          ..+.+||+.+.....+..
T Consensus       274 ~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          274 HTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             SCBCCEEEEEETTTTEEEEEEE
T ss_pred             CcccceEEEEcCCCCEEeecCC
Confidence                457788887776555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.00026  Score=64.88  Aligned_cols=234  Identities=9%  Similarity=0.029  Sum_probs=121.4

Q ss_pred             CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCC----CccccccCCccccceeeeeccC
Q 047325           63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPK----NQSVHKRAGTLPTLKDIFKSSI  134 (368)
Q Consensus        63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~----~~~~~~~~~~~~~~~~~~~~~~  134 (368)
                      .+.|+..++... ...+......+.+++|+  ++.|+.+. ..+.|+.+++...    ........              
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--------------  450 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------------  450 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--------------
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--------------
Confidence            356777776543 22222233456677887  45555554 4578888887652    11000000              


Q ss_pred             CCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE
Q 047325          135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT  212 (368)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~  212 (368)
                                        .......|++.+.+ +++++-...+.|.++++........+.........+++.|.+ .|+.
T Consensus       451 ------------------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~  512 (699)
T 1n7d_A          451 ------------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYW  512 (699)
T ss_dssp             ------------------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred             ------------------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEE
Confidence                              11223457777544 444444456789999987554443333333456788898865 5544


Q ss_pred             EcC--CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeec--cce
Q 047325          213 GSA--DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKG--HKL  287 (368)
Q Consensus       213 ~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~  287 (368)
                      +..  .+.|..+++.....      .......-.....|+++|++. +.++-...+.|..+++...... .....  ...
T Consensus       513 td~~~~~~I~~~~~dG~~~------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~  585 (699)
T 1n7d_A          513 TDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLA  585 (699)
T ss_dssp             CCCSSSCCEEBCCSSSCCC------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCS
T ss_pred             cccCCCCeEEEEeCCCCCe------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCC
Confidence            433  26787777653211      111111223456799998755 4455556678999998743221 11110  001


Q ss_pred             EEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325          288 AVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE  337 (368)
Q Consensus       288 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~  337 (368)
                      .-..++.+ +.++++....+.|..++..++  ..+..+.......+.|++.
T Consensus       586 ~P~glavd~~~lywtd~~~~~V~~~d~~~G--~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          586 HPFSLAVFEDKVFWTDIINEAIFSANRLTG--SDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             SCCCCEEETTEEEEECSTTTCEEEEETTTE--EEEECCCTTCSSCCCCCBC
T ss_pred             CceEeEEECCEEEEEeCCCCeEEEEEccCC--CceEEeecCCCCCcEEEEe
Confidence            11223333 345556666788999976554  3444443323334455443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.81  E-value=0.0057  Score=49.68  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCC
Q 047325          165 DCGLLYTASWDR-----TFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKG  230 (368)
Q Consensus       165 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~  230 (368)
                      ++..++.|+.++     .+.+||+.+.+-...  +....... +++...+..++.|+.       -..+.+||+.+..- 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-
Confidence            456677776553     577888877653322  21111111 222222235555554       24588899875421 


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                         ...............+.+  ++++++.|+.+     ..+.+||+++..-... ..........+...++++++.|+.
T Consensus       186 ---~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~  260 (302)
T 2xn4_A          186 ---TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD  260 (302)
T ss_dssp             ---EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             ---EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence               111111111112222222  56777777754     3688999876432111 011111111233457888888886


Q ss_pred             CC-----eEEEEecCCCceeee
Q 047325          305 DK-----TICVWRRDGAIHTCL  321 (368)
Q Consensus       305 dg-----~i~iw~~~~~~~~~~  321 (368)
                      ++     .+.+||+.+.....+
T Consensus       261 ~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCCcccccEEEEcCCCCeEEEC
Confidence            54     488898887655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.68  E-value=0.00039  Score=63.67  Aligned_cols=180  Identities=16%  Similarity=0.067  Sum_probs=97.4

Q ss_pred             CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccC----CeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~  227 (368)
                      ..+..++|++.+..|+.+. ..+.|+.+++..    ......+.........+++.+. + ++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456789998766666654 457899999875    2222222212223456777743 3 4455556788999998643


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEec-C-CCcEEEEeCCCcccccee-eeccceEEEEEEeCCC-EEEEee
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-S-DGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGK-LVFSGS  303 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~  303 (368)
                      ..      .............++++|.+..|+.+. . .+.|..+++......... .......-+++++++. ++++-.
T Consensus       486 ~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          486 KR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             CE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             ce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            11      111111223456788998655555443 2 267888877643221111 0111222367777655 445555


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      ..+.|.+++++......+............|++..++
T Consensus       560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~  596 (699)
T 1n7d_A          560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK  596 (699)
T ss_dssp             TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTE
T ss_pred             CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCE
Confidence            6788999998764333332221222334566666653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.57  E-value=0.023  Score=46.52  Aligned_cols=194  Identities=11%  Similarity=0.067  Sum_probs=113.6

Q ss_pred             cEEEEEecC---CEEEEccCCCcEEEEcCCcce---ecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccc
Q 047325           46 HIYSLAASK---DLLYTGSDSKNIRVWKNLKEF---CGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSV  116 (368)
Q Consensus        46 ~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~  116 (368)
                      .+.+++|+.   .++++-...+.|..++.....   ......-.....++++  +..| ++-...+.|.+.+++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            456778863   366666677888888876431   1122222345567776  4444 444556788888876543211


Q ss_pred             cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeec
Q 047325          117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~  194 (368)
                      ...                                ........+++.|.+..|+.+..  .+.|...++........+..
T Consensus       116 l~~--------------------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A          116 LFW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEC--------------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEe--------------------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            100                                12345678999987666666653  57788888753322222222


Q ss_pred             CCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          195 HDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       195 ~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      .-...+.+++++++  +.++=+..+.|..+|+.....      .............+++.. +.++++-...+.|..++.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence            33456889999855  444555678999999874321      111112233456677653 456666667788999998


Q ss_pred             CCcccc
Q 047325          273 EKQLSH  278 (368)
Q Consensus       273 ~~~~~~  278 (368)
                      .++...
T Consensus       237 ~~G~~~  242 (318)
T 3sov_A          237 YTGEGL  242 (318)
T ss_dssp             TTCCSC
T ss_pred             CCCCce
Confidence            665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.56  E-value=0.014  Score=47.32  Aligned_cols=152  Identities=9%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCe-----EEEEeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCCC
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSK-----CLESVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQHG  228 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~  228 (368)
                      ++..++.|+.+     ..+.+||+.+.+     .+..+.........+..  ++ .++.|+.+     ..+.+||+....
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666777654     468999987755     22222222222222222  44 55666543     368888886542


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEe
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  302 (368)
                          ................+.+  ++++++.|+.+     ..+.+||+.+..-... ..........+...++++++.|
T Consensus       140 ----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  213 (301)
T 2vpj_A          140 ----WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG  213 (301)
T ss_dssp             ----EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             ----EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence                1111111111122222222  56777777654     4588999876432211 1111111112334578888888


Q ss_pred             eCC-----CeEEEEecCCCceeeeEee
Q 047325          303 SAD-----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       303 ~~d-----g~i~iw~~~~~~~~~~~~~  324 (368)
                      +.+     ..+.+||+.+.....+..+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCC
Confidence            764     4689999988766655443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.55  E-value=0.035  Score=48.15  Aligned_cols=197  Identities=9%  Similarity=0.032  Sum_probs=108.0

Q ss_pred             CCEeEEEE-------cCCCCEEEEEeCCC-------cEEEEEccC-CeEE-----EEeecCCCceEEEEeCCC-C-eEEE
Q 047325          155 DAVSCMSL-------DQDCGLLYTASWDR-------TFKVWRISD-SKCL-----ESVSAHDDAVNSVVSSSE-G-LIFT  212 (368)
Q Consensus       155 ~~v~~~~~-------~~~~~~l~~~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~-~l~~  212 (368)
                      .....++|       +++++.|+++...+       .|.+++... +...     ..+... .....++.+|+ + ++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            35788999       99999777776554       266665333 2221     122211 23456788884 4 5666


Q ss_pred             EcCCCeEEEEEcC-------CCCCCcc--------cccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCC--
Q 047325          213 GSADGTVKVWKRE-------QHGKGTK--------HSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREK--  274 (368)
Q Consensus       213 ~~~dg~i~i~d~~-------~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~--  274 (368)
                      -..++.|..+|+.       .......        ...+.. .........++|+|+++.|+ +-.....|+.++...  
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~  343 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK  343 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence            6778899999987       3321000        001111 12234467899999999544 445667888866542  


Q ss_pred             cccc-ceeeec------------------cceEEEEEE-------eCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-
Q 047325          275 QLSH-GGVLKG------------------HKLAVLCLA-------AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-  327 (368)
Q Consensus       275 ~~~~-~~~~~~------------------~~~~~~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-  327 (368)
                      .... ...+.+                  ++....++.       .++.++++=..+.+|+.++.+.    .+.++.+. 
T Consensus       344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G----~v~TiaG~g  419 (496)
T 3kya_A          344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG----IVSTYAGRG  419 (496)
T ss_dssp             TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC----BEEEEEESC
T ss_pred             ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC----CEEEEeccc
Confidence            2110 011111                  111134444       4456666666788899997432    12222211 


Q ss_pred             -----------------------ccCeeEEEEecC-CeeeecCCcceEEEEEee
Q 047325          328 -----------------------TGPVKCLAVEED-RDSSSSTSSCAQRWIVYS  357 (368)
Q Consensus       328 -----------------------~~~v~~l~~~~~-~~~~~~~~~~~~~w~l~s  357 (368)
                                             -.....|+++++ +.+..+-....++..+..
T Consensus       420 ~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          420 ASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             TTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence                                   123678999997 776555555555555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.50  E-value=0.052  Score=49.02  Aligned_cols=176  Identities=13%  Similarity=0.037  Sum_probs=105.6

Q ss_pred             CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325          155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT  231 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~  231 (368)
                      ..+..++|++.+..|+.+ ..++.|..+++........+.........+++.+.+  ++++-...+.|.+.++.....  
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence            457789999976666555 456889999886544333333333445677776543  556666678999999864321  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTI  308 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i  308 (368)
                          .......-.....+++.|....|+...  ..+.|...++................-++++++++.|+.+ ...+.|
T Consensus       115 ----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          115 ----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI  190 (628)
T ss_dssp             ----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence                111112334578999998655555544  3567888887754332111111223346777766666555 456789


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ...+++....+.   +........+|++..+
T Consensus       191 ~~~d~dG~~~~v---~~~~l~~P~glav~~~  218 (628)
T 4a0p_A          191 ESSNMLGLNREV---IADDLPHPFGLTQYQD  218 (628)
T ss_dssp             EEEETTSCSCEE---EEECCSCEEEEEEETT
T ss_pred             EEEcCCCCceEE---eeccCCCceEEEEECC
Confidence            999987653332   2233344567888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.45  E-value=0.02  Score=48.01  Aligned_cols=113  Identities=14%  Similarity=0.104  Sum_probs=78.2

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe------------EEEEeec------CCCceEEEEeCCCC----eEEEE
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK------------CLESVSA------HDDAVNSVVSSSEG----LIFTG  213 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~~----~l~~~  213 (368)
                      .|..+..+|+|++|+..+. ..|.|..+..+.            ..+.+.-      ...+|..+.|+|-+    .|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5677999999999998875 689999887331            1122321      24679999999976    89999


Q ss_pred             cCCCeEEEEEcCCCCCCcccccce-----eeccccccEEEEEEcCCCCEEEE--ecCCCcEEEE
Q 047325          214 SADGTVKVWKREQHGKGTKHSLAQ-----TLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFW  270 (368)
Q Consensus       214 ~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~  270 (368)
                      ..|+.|++||+........ ...+     ........|.+++|.+++-.|..  .+.+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999986322111 0000     11112256889999998877776  4488888754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.43  E-value=0.025  Score=45.92  Aligned_cols=152  Identities=10%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             CCCEEEEEeCC----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEcCCCCCCc
Q 047325          165 DCGLLYTASWD----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKREQHGKGT  231 (368)
Q Consensus       165 ~~~~l~~~~~d----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~  231 (368)
                      ++..++.|+.+    ..+.+||+.+.+-..  .+.........+..  ++ .++.|+.+      ..+.+||+....-  
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW--  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--
Confidence            45566777654    578899988775332  22211112222222  44 66666654      4688899875421  


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~  301 (368)
                        ...............+.+  ++++++.|+.         -..+.+||+.+..-... ..........+...++++++.
T Consensus       131 --~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  206 (306)
T 3ii7_A          131 --HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV  206 (306)
T ss_dssp             --EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             --EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence              111111111111222222  5666676653         34588999876532111 111111111223347788888


Q ss_pred             eeCC-----CeEEEEecCCCceeeeEee
Q 047325          302 GSAD-----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       302 ~~~d-----g~i~iw~~~~~~~~~~~~~  324 (368)
                      |+.+     ..+.+||+.+.....+..+
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred             eCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence            8754     4588999888766655444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.036  Score=48.05  Aligned_cols=159  Identities=11%  Similarity=0.118  Sum_probs=93.7

Q ss_pred             CEeEEEEcC-CCCEEEEEe-CCCcEEEEEccCCeEEEEeecC---CCceEEEEe-------CCCC-eEEEEcCCC-----
Q 047325          156 AVSCMSLDQ-DCGLLYTAS-WDRTFKVWRISDSKCLESVSAH---DDAVNSVVS-------SSEG-LIFTGSADG-----  217 (368)
Q Consensus       156 ~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~-~l~~~~~dg-----  217 (368)
                      ....|+++| +...|+.+. ..+.|++.|+.++.....+...   ......++|       ++++ .|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 344555554 4467999999887766555432   235789999       9888 566665543     


Q ss_pred             --eEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCC-------Cccc----------
Q 047325          218 --TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWERE-------KQLS----------  277 (368)
Q Consensus       218 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~----------  277 (368)
                        .|.+++....+..........+.. -.....++++| ++.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              366666433111110000011111 12345678899 55566667788889999987       3332          


Q ss_pred             -cceeee---ccceEEEEEEeCCCEEEEe-eCCCeEEEEecCC
Q 047325          278 -HGGVLK---GHKLAVLCLAAAGKLVFSG-SADKTICVWRRDG  315 (368)
Q Consensus       278 -~~~~~~---~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~  315 (368)
                       ......   .....-++++|++++|+.+ .....|+.++.+.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence             001111   1223457888999965544 5677898877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.42  E-value=0.015  Score=47.32  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             CCCEEEEEeC----C-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCC
Q 047325          165 DCGLLYTASW----D-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQH  227 (368)
Q Consensus       165 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~  227 (368)
                      ++.+++.|+.    +     ..+.+||+.+.+-...  +.........+.+  ++ .++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4555666554    2     4688899887653222  2111112222222  44 55565543     46888888754


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEE
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~  301 (368)
                      .-    ...............+.+  ++++++.|+.+     ..+.+||+.+..-... ..........+...++++++.
T Consensus       148 ~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  221 (308)
T 1zgk_A          148 EW----HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA  221 (308)
T ss_dssp             EE----EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             eE----eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence            21    111111111122222223  56777777654     4588999875432110 111111111233347888888


Q ss_pred             eeCC-----CeEEEEecCCCceeeeEee
Q 047325          302 GSAD-----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       302 ~~~d-----g~i~iw~~~~~~~~~~~~~  324 (368)
                      |+.+     ..+.+||+.+.....+..+
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            8765     5689999888766555433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.41  E-value=0.023  Score=46.09  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCCC-----eEEEEEcCCCCCCcc
Q 047325          165 DCGLLYTASWD-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSADG-----TVKVWKREQHGKGTK  232 (368)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~  232 (368)
                      ++..++.|+.+     ..+.+||+.+.+-...  +....... +++...+..++.|+.++     .+.+||+.+..    
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE----  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECSSCEEEEEEEEETTTTE----
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCCCccCceEEEEeCCCCe----
Confidence            45566666644     3588999887653222  22111112 22222233556665443     57788876542    


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEecCC-------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      ................+.+  ++++++.|+.+       ..+.+||+.+..-... ..........+...++++++.|+.
T Consensus       136 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  213 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH  213 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC
Confidence            1111111111112222222  56677776543       3588999876432111 111111111233457888888876


Q ss_pred             C-----CeEEEEecCCCceeeeEee
Q 047325          305 D-----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       305 d-----g~i~iw~~~~~~~~~~~~~  324 (368)
                      +     ..+.+||+.+.....+..+
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~  238 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADM  238 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCC
Confidence            5     3688999887766555433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.41  E-value=0.11  Score=50.50  Aligned_cols=271  Identities=12%  Similarity=0.072  Sum_probs=138.8

Q ss_pred             CCcEEEEEec--------CCEEEEccC-CCcEEEEcCCcc--ee--cccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325           44 EGHIYSLAAS--------KDLLYTGSD-SKNIRVWKNLKE--FC--GFKASSGLVKAIVIS----GEKIFTGHQDGKIRV  106 (368)
Q Consensus        44 ~~~i~~~~~~--------~~~l~s~~~-dg~i~iw~~~~~--~~--~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v  106 (368)
                      .+.|.|+++.        .++++.|.. |++|+|+++...  +.  .+. ......++.+.    ..+|..|-.||.+..
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~-~~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG-GEIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC-SSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC-CCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            4579999975        248899986 999999998642  11  111 12244455443    347889999999887


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISD  185 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~  185 (368)
                      +.++...-..       ....                    ..+.| ..++.-..+...+. .+++++ +....++--. 
T Consensus       632 ~~~d~~tg~l-------~d~r--------------------~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-  681 (1158)
T 3ei3_A          632 FGLNIETGLL-------SDRK--------------------KVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-  681 (1158)
T ss_dssp             EEECTTTCCE-------EEEE--------------------EEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-
T ss_pred             EEEcCCCCcc-------ccce--------------------eEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-
Confidence            7765321000       0000                    00111 12333223322222 233333 3444444322 


Q ss_pred             CeEEEEeecCCCceEEE-EeC----CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          186 SKCLESVSAHDDAVNSV-VSS----SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       186 ~~~~~~~~~~~~~v~~~-~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                      ++.... .-....+..+ .|+    |++.++ .+ ++.++|..+....+     .......-...+..++++|+.+.++.
T Consensus       682 ~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~-~~-~~~LrI~~i~~~~~-----~~~~~ipL~~Tprri~y~~~~~~~~v  753 (1158)
T 3ei3_A          682 HKLVFS-NVNLKEVNYMCPLNSDGYPDSLAL-AN-NSTLTIGTIDEIQK-----LHIRTVPLYESPRKICYQEVSQCFGV  753 (1158)
T ss_dssp             SSEEEE-EBSSSCCCEEEEECCSSSTTEEEE-EC-SSCEEEEEECCSSS-----EEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred             CceEEe-ccChHHhceEeccCcccCCCcEEE-Ec-CCceEEEEecccCC-----eeEEEEeCCCCceEEEEcCCCCEEEE
Confidence            222211 1111223222 343    334443 23 45699988754321     11222223456788888887776554


Q ss_pred             ecCC-------------------------------------------------CcEEEEeCCCccccceeeeccceEEEE
Q 047325          261 GSSD-------------------------------------------------GLVNFWEREKQLSHGGVLKGHKLAVLC  291 (368)
Q Consensus       261 ~~~d-------------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~  291 (368)
                      +..+                                                 +.|++.|..+.+............+.+
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s  833 (1158)
T 3ei3_A          754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS  833 (1158)
T ss_dssp             EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred             EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence            4321                                                 124455544433221111122223333


Q ss_pred             EE---eC---CCEEEEee----------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          292 LA---AA---GKLVFSGS----------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       292 ~~---~~---~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      +.   ..   ..++++|.          ..|.|++|++...+.+.+... ...++|++|+-- +|.++++.+....+|.+
T Consensus       834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g~Lla~ig~~l~vy~l  911 (1158)
T 3ei3_A          834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NGKLLASINSTVRLYEW  911 (1158)
T ss_dssp             EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TTEEEEEETTEEEEEEE
T ss_pred             EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CCEEEEEcCCEEEEEEC
Confidence            33   22   46888886          358899999975544444443 356789998754 46777777777877765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.39  E-value=0.0061  Score=46.11  Aligned_cols=146  Identities=6%  Similarity=-0.068  Sum_probs=80.5

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE------EEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCC
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC------LESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQH  227 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~  227 (368)
                      ..+..++|+|++.+.++  .+|.+.-.+..+.+.      -..+-. --..-.++.|.++|.|.++ .||.|+-++.-+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            36779999998886666  678777777654221      111110 0011478899999966666 6799988875332


Q ss_pred             CCCcccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-----cee---eeccceEEEEEEeCCCE
Q 047325          228 GKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-----GGV---LKGHKLAVLCLAAAGKL  298 (368)
Q Consensus       228 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~  298 (368)
                      ....-.-....+ ...=..+..+.+.|+|.+-+..  |+.++-.........     ...   -.-|..+.+.+.+++.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            221100001111 1112457999999999877777  777544332211100     011   11234444556667766


Q ss_pred             EEEeeCCCe
Q 047325          299 VFSGSADKT  307 (368)
Q Consensus       299 l~~~~~dg~  307 (368)
                      .++.  +|.
T Consensus       196 ~~v~--~g~  202 (236)
T 1tl2_A          196 FGVQ--GGK  202 (236)
T ss_dssp             EEEE--TTE
T ss_pred             EEEe--CCe
Confidence            6655  663

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.36  E-value=0.048  Score=45.34  Aligned_cols=104  Identities=6%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE--EEEee---cCCCceEEEEeCCC----CeEEEEcC-C-----CeE
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC--LESVS---AHDDAVNSVVSSSE----GLIFTGSA-D-----GTV  219 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~l~~~~~-d-----g~i  219 (368)
                      .....++|.|++++ +++..+|.|.+++  .++.  +..+.   ........++++|+    +.|+++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45678999999984 4556679999998  4442  22221   12356789999998    44444433 2     678


Q ss_pred             EEEEcCCCCCCcccccceeec---cccccEEEEEEcCCCCEEEEe
Q 047325          220 KVWKREQHGKGTKHSLAQTLL---KQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       220 ~i~d~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ..++...............+.   ........++|.|+|.+.++.
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            888876321100111111122   111223689999999766664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.32  E-value=0.14  Score=49.80  Aligned_cols=225  Identities=9%  Similarity=0.093  Sum_probs=118.9

Q ss_pred             CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      ...|...+.++.+++.++ ++.+.+++++.++.....                               -..-...|.|++
T Consensus       513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~-------------------------------~~~l~~evscl~  560 (1158)
T 3ei3_A          513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQIS-------------------------------HTEMEHEVACLD  560 (1158)
T ss_dssp             CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEE-------------------------------EEECSSCEEEEE
T ss_pred             CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeec-------------------------------ccCCCCceEEEE
Confidence            346777777777777775 678888887753211100                               011356799999


Q ss_pred             EcCC------CCEEEEEeC-CCcEEEEEccCCeEEEEeecC-CCceEEEEeC--CCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325          162 LDQD------CGLLYTASW-DRTFKVWRISDSKCLESVSAH-DDAVNSVVSS--SEG-LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       162 ~~~~------~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      +.|.      .+++++|.. |++++|+++.+.+.+....-. .....++.+.  ... +|..|-.||.+..+.++.... 
T Consensus       561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg-  639 (1158)
T 3ei3_A          561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG-  639 (1158)
T ss_dssp             CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC-
T ss_pred             eecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC-
Confidence            8763      368999996 999999999887666443321 1233343322  223 889999999987777653211 


Q ss_pred             cccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeecc-ceEEEEEEeC--CCEEEEeeCCC
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKGH-KLAVLCLAAA--GKLVFSGSADK  306 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~--~~~l~~~~~dg  306 (368)
                      ..........+ ..++.-..+...+. .+++.+ +.-..+|..+..... ...... -..+..|+-.  .+-++..+ ++
T Consensus       640 ~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~-s~l~~~~v~~~~~F~se~~~~g~v~~~-~~  715 (1158)
T 3ei3_A          640 LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVF-SNVNLKEVNYMCPLNSDGYPDSLALAN-NS  715 (1158)
T ss_dssp             CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEE-EEBSSSCCCEEEEECCSSSTTEEEEEC-SS
T ss_pred             ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEE-eccChHHhceEeccCcccCCCcEEEEc-CC
Confidence            00000011112 22333333333333 333333 343444443322111 111111 1123333321  33444443 45


Q ss_pred             eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      .++|..++....-.++.+. -...+..++++|+.+.++
T Consensus       716 ~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~  752 (1158)
T 3ei3_A          716 TLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFG  752 (1158)
T ss_dssp             CEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEE
T ss_pred             ceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEE
Confidence            6999988654333344443 345788999999887544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.31  E-value=0.089  Score=47.45  Aligned_cols=214  Identities=8%  Similarity=0.019  Sum_probs=114.3

Q ss_pred             CCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325           63 SKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP  136 (368)
Q Consensus        63 dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (368)
                      ...|+..++...   ............+++++  ++.|+.+. ..+.|..++++........                  
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v------------------   78 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------   78 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE------------------
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE------------------
Confidence            346777776542   22222334456788887  55665554 4677888887654210000                  


Q ss_pred             CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEc
Q 047325          137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGS  214 (368)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~  214 (368)
                                   ...-......+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+.+.
T Consensus        79 -------------~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           79 -------------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             -------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             -------------EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEec
Confidence                         00012457789999865555544 45688999998654333333234445678899886 4555444


Q ss_pred             C--CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCcccccee--eeccceEE
Q 047325          215 A--DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGV--LKGHKLAV  289 (368)
Q Consensus       215 ~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~  289 (368)
                      .  .+.|...++.....      .......-.....+++++++..|+. -...+.|..+|+.........  ...|+   
T Consensus       146 ~g~~~~I~r~~~dG~~~------~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---  216 (619)
T 3s94_A          146 WGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP---  216 (619)
T ss_dssp             CSSSCEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------C---
T ss_pred             cCCCCEEEEEECCCCce------EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc---
Confidence            2  46777777653311      1111123345788999986655554 455678999988753332111  11222   


Q ss_pred             EEEEeCCCEEE-EeeCCCeEEEEecCCC
Q 047325          290 LCLAAAGKLVF-SGSADKTICVWRRDGA  316 (368)
Q Consensus       290 ~~~~~~~~~l~-~~~~dg~i~iw~~~~~  316 (368)
                      ..++.++..|+ +-...+.|...|..++
T Consensus       217 ~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          217 FALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             CCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             eEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence            23444444444 4445677888876544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.29  E-value=0.056  Score=44.73  Aligned_cols=182  Identities=12%  Similarity=0.110  Sum_probs=102.1

Q ss_pred             CEeEEEEcCCCCEEEEE------------eCCCcEEEEEccC--CeEE-EEeec-----CCCceEEEEeCC--CC--eEE
Q 047325          156 AVSCMSLDQDCGLLYTA------------SWDRTFKVWRISD--SKCL-ESVSA-----HDDAVNSVVSSS--EG--LIF  211 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~------------~~d~~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~--~l~  211 (368)
                      ..-++.+.|+|..++++            ..+|.|.++|+.+  ++.. ..+.+     .......+.+.+  ++  +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34567778877555554            1689999999873  2221 12222     123455666544  34  455


Q ss_pred             EEc-C--CCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEec-----------------CCCcEEEE
Q 047325          212 TGS-A--DGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGS-----------------SDGLVNFW  270 (368)
Q Consensus       212 ~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~  270 (368)
                      ++. .  +.+|.+|++...+.  .........+ .-...+.+.+.++|.+.++..                 ..|.|+.+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            442 2  56788888865432  1122223322 234578999999998777754                 12456666


Q ss_pred             eCCCccccceeee-ccceEEEEEEeCCCEEEEee-CCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEec-CCeee
Q 047325          271 EREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEE-DRDSS  343 (368)
Q Consensus       271 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~-~~~~~  343 (368)
                      |..  . ...... -....-++++||++.|+.+. ..+.|..|+++.. .......+ ...+..-.+++.+ +|.+.
T Consensus       209 d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          209 SPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             CTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             ECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            653  1 111122 12334478999998777664 5788999998632 22222233 2245567788888 47743

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.28  E-value=0.033  Score=46.39  Aligned_cols=147  Identities=10%  Similarity=0.016  Sum_probs=63.6

Q ss_pred             CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcC------CCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          176 RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSA------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      ..+.+||+.+.+=..  .+......-.+++...+..++.|+.      ...+..||++....  ....+...........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~--~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL--KWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C--EEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC--cEEecCCCCCCccccc
Confidence            578999998765332  2221111112333333335556653      34577787632211  1111111111111111


Q ss_pred             EEEEcCCCCEEEEecCC----------------------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325          248 ALVVSSSRSIVYCGSSD----------------------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       248 ~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      ..+...++++++.|+.+                      ..+.+||+++..-... ..........++..++++++.|+.
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence            11112256677777632                      2477899875432211 111111112334568888888886


Q ss_pred             CC------eEEEEecCCCceeeeEee
Q 047325          305 DK------TICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       305 dg------~i~iw~~~~~~~~~~~~~  324 (368)
                      ++      .|.++++++.+......+
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            53      355557766644433333

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.24  E-value=0.13  Score=47.84  Aligned_cols=181  Identities=8%  Similarity=0.106  Sum_probs=95.1

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      .|.++...+++..|..|+. +-+..+|..+++...........|.++...+++.|..|+. +-+.+++.....- .....
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEc
Confidence            4888888877776666664 4588899877654322112234688888888887777774 4688888754311 00000


Q ss_pred             --ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee----eeccceEEEEEEeC-CCEEEEeeCCCeE
Q 047325          236 --AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLCLAAA-GKLVFSGSADKTI  308 (368)
Q Consensus       236 --~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~dg~i  308 (368)
                        .....-....|.++....+++ |..|+..| +.++...........    .......+.++..| ...|..|+.+| +
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l  345 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-L  345 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-E
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-c
Confidence              000011234688998887776 44555567 555433221110000    00112346666664 33455566555 5


Q ss_pred             EEEecCCCceeeeEeee-------ccccCeeEEEEecCCee
Q 047325          309 CVWRRDGAIHTCLSVLT-------GHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~  342 (368)
                      ..++..+........+.       -....|.++.-..++.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l  386 (758)
T 3ott_A          346 IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL  386 (758)
T ss_dssp             EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE
T ss_pred             eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE
Confidence            56654432111111111       01235788887777764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.10  E-value=0.15  Score=46.01  Aligned_cols=214  Identities=11%  Similarity=0.043  Sum_probs=121.3

Q ss_pred             CCCcEEEEcCCccee--cc-cCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325           62 DSKNIRVWKNLKEFC--GF-KASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK  135 (368)
Q Consensus        62 ~dg~i~iw~~~~~~~--~~-~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (368)
                      ....|+..++.....  .. ...-....+++|+  ++.|+ +-..++.|..++++..........               
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~---------------   77 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF---------------   77 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---------------
Confidence            345677777763211  11 1123457788888  45555 445678888888765432111110               


Q ss_pred             CCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEE
Q 047325          136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTG  213 (368)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~  213 (368)
                                       -......+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|. |.|+..
T Consensus        78 -----------------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           78 -----------------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             -----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             -----------------CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence                             11345678888765555444 45678999998654332223233455689999984 555554


Q ss_pred             c--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeeccceEEE
Q 047325          214 S--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKGHKLAVL  290 (368)
Q Consensus       214 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  290 (368)
                      .  ..+.|...++.....       ..+...-.....++++++++.|+.+ ...+.|..+|+......  .+......-.
T Consensus       141 D~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v~~~~l~~P~  211 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--VIADDLPHPF  211 (628)
T ss_dssp             ECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECCSCEE
T ss_pred             CCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--EeeccCCCce
Confidence            4  356788887764321       1122234567899999976655554 45678999998754331  2222112223


Q ss_pred             EEEeCCCEEEEe-eCCCeEEEEecCCC
Q 047325          291 CLAAAGKLVFSG-SADKTICVWRRDGA  316 (368)
Q Consensus       291 ~~~~~~~~l~~~-~~dg~i~iw~~~~~  316 (368)
                      .++.++..|+.. ...+.|...|..++
T Consensus       212 glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          212 GLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEECCEEEEecCCCCEEEEEECCCC
Confidence            444444444444 45788888875443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.98  E-value=0.2  Score=45.24  Aligned_cols=176  Identities=13%  Similarity=0.083  Sum_probs=98.7

Q ss_pred             CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325          155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      .....++|++.+..|+.+. ..+.|..+++..... ...+...-.....+++.+.+  .+++-...+.|.+.++..... 
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-
Confidence            4567899998777666665 457788888865432 22333333567888888744  555666788999999875321 


Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceee--eccceEEEEEEeCCCEEEEe-eCC
Q 047325          231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKLVFSG-SAD  305 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~d  305 (368)
                           .......-.....|++.|.+..|+.+.  ..+.|...++...... ...  ......-++++++++.|+.+ ...
T Consensus       119 -----~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~~  192 (619)
T 3s94_A          119 -----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKL  192 (619)
T ss_dssp             -----EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred             -----EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence                 111112334567899998755555444  2467777777643221 111  11223346777766655555 456


Q ss_pred             CeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      +.|...+++......+.  .+......+|++.++
T Consensus       193 ~~I~~~~~dG~~~~~~~--~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          193 NFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED  224 (619)
T ss_dssp             CCEEEESSSCCEEC-----------CCCEEESSS
T ss_pred             CeEEEecCCCCccEEEE--eCCCCCceEEEEeCC
Confidence            78999988765333222  112223356677666

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.93  E-value=0.12  Score=42.05  Aligned_cols=150  Identities=9%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             CCCEEEEEeCC--------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcC------CCeEEEEEcCCCC
Q 047325          165 DCGLLYTASWD--------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSA------DGTVKVWKREQHG  228 (368)
Q Consensus       165 ~~~~l~~~~~d--------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~  228 (368)
                      ++..++.|+.+        ..+.+||+.+.+-..  .+...... .+++...+..++.|+.      -..+.+||+.+..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            45566666632        458899998765322  22111111 1222223335666665      2468899987542


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCcccccee-eeccceEEEEEEeCCCEEEEe
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSG  302 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  302 (368)
                          ...............++.+  ++++++.|+.++     .+.+||+.+..-.... .........+...++++++.|
T Consensus       177 ----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G  250 (315)
T 4asc_A          177 ----WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG  250 (315)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred             ----EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
Confidence                1111111111111222222  567777777654     5888998764321111 111111112334577888888


Q ss_pred             eCCC--------------eEEEEecCCCceeee
Q 047325          303 SADK--------------TICVWRRDGAIHTCL  321 (368)
Q Consensus       303 ~~dg--------------~i~iw~~~~~~~~~~  321 (368)
                      +.++              .+.+||+++.....+
T Consensus       251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          251 GFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            7642              367788877655554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.92  E-value=0.14  Score=42.61  Aligned_cols=61  Identities=20%  Similarity=0.105  Sum_probs=38.3

Q ss_pred             CCCEEEEeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecC-CcceEEEEE
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSST-SSCAQRWIV  355 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l  355 (368)
                      ++.++++.-..+.|...+++.........+ ......+.++++.|||.+.++. ...+++|.|
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence            467777777778888888765421111222 2233579999999999865543 355666665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.70  E-value=0.13  Score=39.05  Aligned_cols=174  Identities=9%  Similarity=-0.038  Sum_probs=89.2

Q ss_pred             CEEEEEeCCCcEEEEEccCCe------EEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325          167 GLLYTASWDRTFKVWRISDSK------CLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL  239 (368)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  239 (368)
                      ..|++...| +++.=...++.      ....+.. -=..+..++|+|++.|.+. .+|.++-.+..+.....-......+
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I   82 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI   82 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence            455566666 55444444333      1122221 1236779999999966666 7887766665432210000011111


Q ss_pred             c-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-----eeeec---cceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          240 L-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-----GVLKG---HKLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       240 ~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      - ..-..-.++.|.|++.+.++  .||.|+-++..+.....     ..+..   .....+.+.|+|.+.++.  |+.++-
T Consensus        83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A           83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            0 00111378899999988777  56999888754321110     11111   234556677788877776  777544


Q ss_pred             EecCCCc---e-eeeEeee-ccccCeeEEEEecCCeeeecC
Q 047325          311 WRRDGAI---H-TCLSVLT-GHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       311 w~~~~~~---~-~~~~~~~-~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      .......   . .....+. .....-+-+.|.+++.+.+..
T Consensus       159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            3222110   0 0011111 222234557799999866555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.67  E-value=0.24  Score=41.74  Aligned_cols=149  Identities=11%  Similarity=0.107  Sum_probs=87.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc----
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH----  233 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----  233 (368)
                      ...++..++.+- ++.||.-++.....-+.+...    -..+..+..+|+|.+++-..+..|.|..+-.+......    
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence            345666666664 478888888744434444433    23578899999994444445668999988733211110    


Q ss_pred             --ccceeec------cccccEEEEEEcC---CCCEEEEecCCCcEEEEeCCCccccceeee------c---cceEEE--E
Q 047325          234 --SLAQTLL------KQECAVTALVVSS---SRSIVYCGSSDGLVNFWEREKQLSHGGVLK------G---HKLAVL--C  291 (368)
Q Consensus       234 --~~~~~~~------~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~---~~~~~~--~  291 (368)
                        ...+.+.      ....+|..+.|+|   .+..|++-..|+.|++||+.........+.      +   ....+.  |
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              0011111      1256799999999   456899999999999999985221111111      1   112333  4


Q ss_pred             EEeCCCEEEE--eeCCCeEEEE
Q 047325          292 LAAAGKLVFS--GSADKTICVW  311 (368)
Q Consensus       292 ~~~~~~~l~~--~~~dg~i~iw  311 (368)
                      |..++-.|+.  .+..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            4445555555  4477887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.64  E-value=0.21  Score=40.71  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCC-------CcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEcC------CCeEEEEEcCCCCC
Q 047325          165 DCGLLYTASWD-------RTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGSA------DGTVKVWKREQHGK  229 (368)
Q Consensus       165 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~  229 (368)
                      ++..++.|+.+       ..+.+||+.+.+-...-...... -.+++. .++ .++.|+.      -..+.+||+.+.. 
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence            45667777653       25788898776533221111111 112222 244 5555553      2458899987542 


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEee
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  303 (368)
                         ...............++.+  ++++++.|+.+     ..+.+||+.+..-.. ...........+...++++++.|+
T Consensus       187 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  261 (318)
T 2woz_A          187 ---WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG  261 (318)
T ss_dssp             ---EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             ---EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence               1111111111111222222  56777777643     347788887643211 111111111133445788888887


Q ss_pred             CC--------------CeEEEEecCCCceeee
Q 047325          304 AD--------------KTICVWRRDGAIHTCL  321 (368)
Q Consensus       304 ~d--------------g~i~iw~~~~~~~~~~  321 (368)
                      .+              ..+.+||+.+.....+
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             BCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             eeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            64              3477888877655544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.61  E-value=0.22  Score=40.55  Aligned_cols=154  Identities=10%  Similarity=0.106  Sum_probs=77.1

Q ss_pred             CCCCEEEEEeC----C-------CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC--------CeEEEE
Q 047325          164 QDCGLLYTASW----D-------RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD--------GTVKVW  222 (368)
Q Consensus       164 ~~~~~l~~~~~----d-------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~i~  222 (368)
                      .++..++.|+.    +       ..+..||+.+.+-...  +...... .+++...+..++.|+.+        ..+.+|
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence            46677777773    1       1277889887653221  1111111 12222222355566632        458889


Q ss_pred             EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-C-----CcEEEEeCCCccccc-eeeeccceEEEEEEeC
Q 047325          223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-D-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAA  295 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~  295 (368)
                      |+.+..    ................+.  -++++++.|+. +     ..+.+||..+..-.. ...........+...+
T Consensus       123 d~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  196 (315)
T 4asc_A          123 DRLSFK----WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD  196 (315)
T ss_dssp             ETTTTE----EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             CCCCCc----EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence            987542    111111111112222222  25667777765 2     468899987643211 1111111111233457


Q ss_pred             CCEEEEeeCCC-----eEEEEecCCCceeeeEee
Q 047325          296 GKLVFSGSADK-----TICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       296 ~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~  324 (368)
                      +++++.|+.++     .+.+||+.+.....+..+
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  230 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF  230 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence            88888887654     588888887766655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.51  E-value=0.25  Score=40.19  Aligned_cols=155  Identities=10%  Similarity=0.071  Sum_probs=74.7

Q ss_pred             cCCCCEEEEEeC----CC-------cEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC-------CeEEEE
Q 047325          163 DQDCGLLYTASW----DR-------TFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD-------GTVKVW  222 (368)
Q Consensus       163 ~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~  222 (368)
                      ..++..++.|+.    ++       .+..||..+.+-...  +...... .+++...+..++.|+.+       ..+.+|
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y  132 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCY  132 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEE
Confidence            346677777773    11       177888877653322  1111111 12222223355555543       357788


Q ss_pred             EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeCCCccccce-eeeccceEEEEEEeC
Q 047325          223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWEREKQLSHGG-VLKGHKLAVLCLAAA  295 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~  295 (368)
                      |+.+..    ................+.  .++++++.|+.      -..+.+||+.+..-... ..........+...+
T Consensus       133 d~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  206 (318)
T 2woz_A          133 DPVAAK----WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK  206 (318)
T ss_dssp             ETTTTE----EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             eCCCCC----EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC
Confidence            886542    111111111111111222  35667777764      23589999876432111 111111111223357


Q ss_pred             CCEEEEeeCC-----CeEEEEecCCCceeeeEee
Q 047325          296 GKLVFSGSAD-----KTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       296 ~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~  324 (368)
                      +++++.|+.+     ..+.+||+.+.....+..+
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  240 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF  240 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred             CEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence            7888888753     3577888887766555443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.51  E-value=0.29  Score=40.69  Aligned_cols=107  Identities=5%  Similarity=-0.039  Sum_probs=61.9

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-EEEEee---cCCCceEEEEeCCC----CeEEEEcC----C----C
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-CLESVS---AHDDAVNSVVSSSE----GLIFTGSA----D----G  217 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~l~~~~~----d----g  217 (368)
                      -.....++|.|+++ |+++..+|.|+++| .+++ .+..+.   ........++++|+    +.|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34568899999987 55556779999997 4554 222221   12346789999997    55544433    3    5


Q ss_pred             eEEEEEcCCCCCC-cccc-cceeec-cccccEEEEEEcCCCCEEEEec
Q 047325          218 TVKVWKREQHGKG-TKHS-LAQTLL-KQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       218 ~i~i~d~~~~~~~-~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .|..++....... .... ....+. ........++|.|+|.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            6777776543110 0011 111111 1112246789999998766643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.49  E-value=0.29  Score=40.54  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             CCEeEEEEcCCCCEEEEEe-----------------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-e-EEEEcC
Q 047325          155 DAVSCMSLDQDCGLLYTAS-----------------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L-IFTGSA  215 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~  215 (368)
                      ...+.+.+.++|.+.++..                 ..|.|.-+|.  ++.. .+...-...+.++|+|++ . +++-+.
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence            4578899999887666653                 1244555554  3322 222223456899999999 4 445556


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC-CcEEEEe
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD-GLVNFWE  271 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d  271 (368)
                      .+.|..|++...+...   ....+ ...+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus       242 ~~~I~~~~~~~~g~l~---~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          242 AHKIHVYEKHANWTLT---PLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             GTEEEEEEECTTSCEE---EEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             CCeEEEEEECCCCcEe---cCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence            8899999997432211   11122 2245677888888 58877655433 3444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.45  E-value=0.31  Score=40.44  Aligned_cols=104  Identities=11%  Similarity=-0.031  Sum_probs=48.0

Q ss_pred             CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeC--CCcccc-ceeeeccc-
Q 047325          217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWER--EKQLSH-GGVLKGHK-  286 (368)
Q Consensus       217 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~-~~~~~~~~-  286 (368)
                      ..+.+||+.+..    .............-.+++.. ++++++.|+.      ...+..||+  .+..-. ........ 
T Consensus       168 ~~v~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQ----WSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTE----EEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccEEEEeCCCCc----EEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            578899987542    11111111111110122222 5566677653      345777876  332111 01111111 


Q ss_pred             -eEEEEEEeCCCEEEEeeCC----------------------CeEEEEecCCCceeeeEeee
Q 047325          287 -LAVLCLAAAGKLVFSGSAD----------------------KTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       287 -~~~~~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~~~  325 (368)
                       ....+...++++++.|+.+                      ..+.+||+.+.....+..+.
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p  304 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS  304 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence             1112445678888888742                      25778998877666665544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.40  E-value=0.37  Score=40.79  Aligned_cols=195  Identities=12%  Similarity=0.201  Sum_probs=116.1

Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ..++.|+|+++........                                 ....|.-=.|-.+ +.|+-.+ +..|+-
T Consensus        85 g~~lQiFnle~K~klks~~---------------------------------~~e~VvfWkWis~-~~l~lVT-~taVyH  129 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISL-NTVALVT-DNAVYH  129 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEE---------------------------------CSSCCCEEEEEET-TEEEEEC-SSEEEE
T ss_pred             CCeEEEEchHHhhhhccee---------------------------------cCCCceEEEecCC-CeEEEEc-CCeeEE
Confidence            6799999999876544332                                 2345555566544 3555554 468999


Q ss_pred             EEccC-CeEEEEeecCC----CceEEEEeCCCC--eEEEEc------CCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          181 WRISD-SKCLESVSAHD----DAVNSVVSSSEG--LIFTGS------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       181 wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~--~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      |++.. ..+.+.+..|.    ..|..-..+++.  .+++|-      -.|.+.+|..+..       ..+.+.+|.....
T Consensus       130 Wsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          130 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFA  202 (494)
T ss_dssp             EESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEE
T ss_pred             ecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeE
Confidence            99964 35666666553    456666777777  444442      2467889988754       4566777776655


Q ss_pred             EEEEcCCC---CEEEEecC---CCcEEEEeCCCc---ccc--c---eeee----ccceEE-EEEEeCCCEEEEeeCCCeE
Q 047325          248 ALVVSSSR---SIVYCGSS---DGLVNFWEREKQ---LSH--G---GVLK----GHKLAV-LCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       248 ~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~--~---~~~~----~~~~~~-~~~~~~~~~l~~~~~dg~i  308 (368)
                      .+....+.   +.++.+..   .+.+++.++...   ...  .   ....    ...-++ +.+++....++.-+.-|.|
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence            55443221   23333333   278999998543   100  0   0000    012222 4556667788888999999


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ++||++++  .++..-+-..++|-.-+...+
T Consensus       283 ~lyDleTg--t~i~~nrIs~~~iF~t~~~~~  311 (494)
T 1bpo_A          283 HLYDLETG--TCIYMNRISGETIFVTAPHEA  311 (494)
T ss_dssp             EEEETTTC--CEEEEEECCSSCEEEEEEETT
T ss_pred             EEEecccc--eeeeeecccCCceEEecccCC
Confidence            99999988  455544444555544444333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.31  E-value=0.38  Score=39.97  Aligned_cols=233  Identities=10%  Similarity=0.057  Sum_probs=113.8

Q ss_pred             CeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           84 LVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        84 ~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      ....++|. ...|+.+..+|.|++++. ++. .......                           ++.........+++
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~---------------------------v~~~g~~g~~gia~   80 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFD---------------------------VANVGEAGLLGLAL   80 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECC---------------------------CCCSTTCSEEEEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccc---------------------------eeecCCCceeeEEe
Confidence            35677776 445777777888888863 222 1000000                           00002345788999


Q ss_pred             cCC---CCEEEEEeC----C----CcEEEEEccCC-------eEE-EEeec-CCCceEEEEeCCCCeEEEEcC-------
Q 047325          163 DQD---CGLLYTASW----D----RTFKVWRISDS-------KCL-ESVSA-HDDAVNSVVSSSEGLIFTGSA-------  215 (368)
Q Consensus       163 ~~~---~~~l~~~~~----d----~~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~l~~~~~-------  215 (368)
                      +|+   +..|+++..    +    ..|..++....       +.+ ..+.. .......++|.|+|.|+.+..       
T Consensus        81 ~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~  160 (354)
T 3a9g_A           81 HPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL  160 (354)
T ss_dssp             CTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred             CCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence            997   555555543    2    56777776543       111 11221 112346789999994444322       


Q ss_pred             -------CCeEEEEEcCCCCCCccc--ccceeeccccccEEEEEEcC-CCCEEEEecCCC---cEEEEeCCCc-------
Q 047325          216 -------DGTVKVWKREQHGKGTKH--SLAQTLLKQECAVTALVVSS-SRSIVYCGSSDG---LVNFWEREKQ-------  275 (368)
Q Consensus       216 -------dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~-------  275 (368)
                             .|.|.-++....-.....  .......++ .....++|+| ++++.++-...+   .|.+......       
T Consensus       161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~  239 (354)
T 3a9g_A          161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLAT  239 (354)
T ss_dssp             GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred             ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence                   245655555321000000  001111122 2345789999 566555433221   2433321110       


Q ss_pred             --------cccceee-eccceEE-EEE-------EeCCCEEEEeeCCCeEEEEecCCCc-eeeeEee-eccccCeeEEEE
Q 047325          276 --------LSHGGVL-KGHKLAV-LCL-------AAAGKLVFSGSADKTICVWRRDGAI-HTCLSVL-TGHTGPVKCLAV  336 (368)
Q Consensus       276 --------~~~~~~~-~~~~~~~-~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~-~~h~~~v~~l~~  336 (368)
                              ..+...+ ..+..+. +.+       .+++.++++.-..+.|...+++... ......+ .+-...+.++++
T Consensus       240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~  319 (354)
T 3a9g_A          240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI  319 (354)
T ss_dssp             SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred             CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence                    0111111 1222222 333       1457777776677888888876431 1111222 222457899999


Q ss_pred             ecCCeeeecC
Q 047325          337 EEDRDSSSST  346 (368)
Q Consensus       337 ~~~~~~~~~~  346 (368)
                      .|||.+.++.
T Consensus       320 ~pDG~lyv~~  329 (354)
T 3a9g_A          320 DDDGGILIST  329 (354)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999754443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.17  E-value=0.37  Score=38.50  Aligned_cols=240  Identities=13%  Similarity=0.132  Sum_probs=128.3

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL  123 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  123 (368)
                      .|..++......+.-. ||.|..|-...  ++-........|..++......+.-. ||.|..|-.....+.-....   
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~---   99 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE---   99 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG---
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcc---
Confidence            5777777666333334 89999995432  11111112336777777655444445 99999998765432211000   


Q ss_pred             ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE
Q 047325          124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV  203 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  203 (368)
                                                   -...|..++...+  ..+.-. ||.|..|-....-.+..-......|..++
T Consensus       100 -----------------------------~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~  147 (282)
T 3qhy_B          100 -----------------------------ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD  147 (282)
T ss_dssp             -----------------------------GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred             -----------------------------cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence                                         1235667766544  333344 89999997644221111111234577777


Q ss_pred             eCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325          204 SSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK  283 (368)
Q Consensus       204 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  283 (368)
                      ......++..  ||.|+.|-.....+....      ......|..++...+.. ++.  .||.|+.|-....-.+. ...
T Consensus       148 ~G~~~~~~l~--~G~v~~wG~n~~gqlg~p------~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~  215 (282)
T 3qhy_B          148 GGVYTALAVK--NGGVIAWGDNYFGQTTVP------AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPT  215 (282)
T ss_dssp             ECSSEEEEEE--TTEEEEEECCTTSTTSCC------GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCG
T ss_pred             cccCEEEEEE--CCEEEEecCCCCCCCCCc------eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCc
Confidence            6655544433  799999987654332111      11134577777654433 333  59999999765432221 111


Q ss_pred             ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325          284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD  341 (368)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  341 (368)
                      .....+..++......++-. ||.|+.|-....  .++.    -...|.+|+-.....
T Consensus       216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~--gq~~----v~~~v~~iaaG~~h~  266 (282)
T 3qhy_B          216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRT--APSS----VQSGVSSIEAGPNAA  266 (282)
T ss_dssp             GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCC--CCGG----GSSCEEEEEECSSCE
T ss_pred             ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCC--cccc----CCCCcEEEEECcCeE
Confidence            11223556665444444444 999999954432  1111    123577777666555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.15  E-value=0.64  Score=45.70  Aligned_cols=175  Identities=11%  Similarity=0.198  Sum_probs=99.2

Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      ...++.|+|+++........                                 ....|.-=.|-.+. .|+-.+ +..|.
T Consensus        84 ag~~lQiFnl~~k~klks~~---------------------------------~~e~VvfWkWis~~-~l~lVT-~~aVy  128 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISLN-TVALVT-DNAVY  128 (1630)
T ss_pred             cCCeEEEeehHHhhhhcccc---------------------------------cCCCceEEEecCCC-eeEEEc-CCeEE
Confidence            36799999999887554433                                 23455556665443 444444 36799


Q ss_pred             EEEccC-CeEEEEeecC----CCceEEEEeCCCC--eEEEEc------CCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325          180 VWRISD-SKCLESVSAH----DDAVNSVVSSSEG--LIFTGS------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAV  246 (368)
Q Consensus       180 iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i  246 (368)
                      .|++.. ..+...+..|    ...|..-..+++.  .+++|-      -.|.+.+|..+..       ..+.+.+|.+..
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F  201 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASF  201 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhh
Confidence            999963 3455555444    3456666667777  344442      3578888888654       334455555444


Q ss_pred             EEEEEc--CC-CCEEEEec---CCCcEEEEeCCCc---ccc-----ceeeec----cceEE-EEEEeCCCEEEEeeCCCe
Q 047325          247 TALVVS--SS-RSIVYCGS---SDGLVNFWEREKQ---LSH-----GGVLKG----HKLAV-LCLAAAGKLVFSGSADKT  307 (368)
Q Consensus       247 ~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~---~~~-----~~~~~~----~~~~~-~~~~~~~~~l~~~~~dg~  307 (368)
                      ..+...  +. .+.++.+.   ..+.++|-++...   ...     ......    ..-++ +.+++....++.-+.-|.
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            333332  11 12222221   1268888887543   000     001111    11112 445556677888889999


Q ss_pred             EEEEecCCC
Q 047325          308 ICVWRRDGA  316 (368)
Q Consensus       308 i~iw~~~~~  316 (368)
                      |++||+.++
T Consensus       282 ~~~~d~~t~  290 (1630)
T 1xi4_A          282 IHLYDLETG  290 (1630)
T ss_pred             EEEEecccc
Confidence            999999887

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.08  E-value=0.48  Score=39.04  Aligned_cols=152  Identities=15%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             eecCCCceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCC---CCEEEEe---cC
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSS---RSIVYCG---SS  263 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~~~---~~  263 (368)
                      +...-.....+++.|+|.++++.. .|.|++++...... .... ..............++++|+   ...|...   ..
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            333345668999999995555555 89999997653321 0000 00112234567899999995   3444432   24


Q ss_pred             CCcEEEEeCCCcc----------ccceee---eccceEEEEEEeCCCEEEEeeC-------------CCeEEEEecCCCc
Q 047325          264 DGLVNFWEREKQL----------SHGGVL---KGHKLAVLCLAAAGKLVFSGSA-------------DKTICVWRRDGAI  317 (368)
Q Consensus       264 dg~i~i~d~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~  317 (368)
                      ++.|.-|.+....          .+...+   ..|...-+.|.+||.+.++.+.             -|.|.-.+.+...
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            4556666654311          111111   2466666888899987777542             2444444443220


Q ss_pred             -------eeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325          318 -------HTCLSVLTGHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       318 -------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  346 (368)
                             ...+.. .+|.+ ...++|+|+|.+.++-
T Consensus       186 p~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          186 APGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEE
T ss_pred             cCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEe
Confidence                   011222 24544 4689999988765543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.04  E-value=0.58  Score=39.63  Aligned_cols=223  Identities=10%  Similarity=0.105  Sum_probs=129.5

Q ss_pred             CCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325           63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY  139 (368)
Q Consensus        63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (368)
                      ..++.|+|++..  +..+.- ...|.-..|- .+.|+-.+ +..|.-|+++............                 
T Consensus        85 g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~-----------------  145 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH-----------------  145 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECC-----------------
T ss_pred             CCeEEEEchHHhhhhcceec-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecc-----------------
Confidence            578999998743  444443 3457677776 67776666 5589999997533211110000                 


Q ss_pred             eEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-------CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC----
Q 047325          140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-------DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG----  208 (368)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----  208 (368)
                           ..   +  ....|..-..+++.+.++..+-       .|.+.+|..+. +.-+.+++|......+....+.    
T Consensus       146 -----~~---L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          146 -----SS---L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEEST  214 (494)
T ss_dssp             -----GG---G--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred             -----hh---c--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCce
Confidence                 00   0  1345666667777776654432       46788999764 4456677776665555544322    


Q ss_pred             eEEEEcC---CCeEEEEEcCCCCCC---cccccceeec---cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325          209 LIFTGSA---DGTVKVWKREQHGKG---TKHSLAQTLL---KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG  279 (368)
Q Consensus       209 ~l~~~~~---dg~i~i~d~~~~~~~---~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  279 (368)
                      .++.+..   .+.+++.++.....+   ...+......   ...+-..++..++....+..-+.-|.+++||++++..+.
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence            2333322   378999998654111   1111111111   224556788888888888899999999999999987653


Q ss_pred             ee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          280 GV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       280 ~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .. +......+.+-.....-++.....|.|.--.++.
T Consensus       295 ~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          295 MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             eecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            22 2223333333333444555555777766665544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.01  E-value=0.7  Score=42.41  Aligned_cols=151  Identities=9%  Similarity=0.058  Sum_probs=78.2

Q ss_pred             CCCEEEEEeCC------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcCCC--eEEEEEcCCCCCCcccc
Q 047325          165 DCGLLYTASWD------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSADG--TVKVWKREQHGKGTKHS  234 (368)
Q Consensus       165 ~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  234 (368)
                      ++..++.|+.+      ..+.+||+.+.+=..  .+......-.++.+..+..++.|+.++  .+.+||..+..    ..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~----W~  526 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI----FK  526 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE----EE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc----eE
Confidence            66677777643      357889988754222  222212222223323333666776654  68999987642    11


Q ss_pred             ccee---eccccccEEEEEEcCC-CCEEEEecC--C-----CcEEEEeCCCccc---c-ceeeec----cceEEEEEEeC
Q 047325          235 LAQT---LLKQECAVTALVVSSS-RSIVYCGSS--D-----GLVNFWEREKQLS---H-GGVLKG----HKLAVLCLAAA  295 (368)
Q Consensus       235 ~~~~---~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~---~-~~~~~~----~~~~~~~~~~~  295 (368)
                      ....   .........++.+..+ +++++.|+.  +     ..+.+||+.+...   . ......    ......+...+
T Consensus       527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~  606 (695)
T 2zwa_A          527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT  606 (695)
T ss_dssp             ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred             EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence            1111   1111122233445544 667777765  2     4588999887651   0 011110    11111223344


Q ss_pred             -CCEEEEeeCC--------CeEEEEecCCCcee
Q 047325          296 -GKLVFSGSAD--------KTICVWRRDGAIHT  319 (368)
Q Consensus       296 -~~~l~~~~~d--------g~i~iw~~~~~~~~  319 (368)
                       +++++.|+.+        ..+.+||+.+....
T Consensus       607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence             7888888743        45899998877555

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.055  Score=44.37  Aligned_cols=148  Identities=11%  Similarity=0.067  Sum_probs=73.8

Q ss_pred             CEEEEccCCCcEEEEcCCcceecccCCC---CCeeEEEE----eCCEEEEE--eCCCeEEEEeecCCCccccccCCcccc
Q 047325           55 DLLYTGSDSKNIRVWKNLKEFCGFKASS---GLVKAIVI----SGEKIFTG--HQDGKIRVWKISPKNQSVHKRAGTLPT  125 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~v~~~~~----~~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~  125 (368)
                      ++++.++.||.|.-.|..++....+...   .++....-    .+..++.+  +.||.|..++..++.............
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            3677788888888887665433222111   12221110    12244444  589999999987764322111110000


Q ss_pred             ceeeeeccCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC--c----
Q 047325          126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD--A----  198 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~----  198 (368)
                                           ...+.+...+|. ..--...+..+++|+.+|.+...|+.+|+.+..+.....  .    
T Consensus        91 ---------------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  149 (339)
T 2be1_A           91 ---------------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQ  149 (339)
T ss_dssp             ---------------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----
T ss_pred             ---------------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccc
Confidence                                 000000111111 000001345889999999999999999999988864321  0    


Q ss_pred             -eEEEEe------CCCCeEEEEcCCCeEEEEE
Q 047325          199 -VNSVVS------SSEGLIFTGSADGTVKVWK  223 (368)
Q Consensus       199 -v~~~~~------~~~~~l~~~~~dg~i~i~d  223 (368)
                       ..|...      ..++.++.+..+..+.+.+
T Consensus       150 ~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          150 SVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             ---------------CCEEEEEEEEEECEECC
T ss_pred             ccccccccccccccCCCeEEEecceEEEEEEC
Confidence             111111      1123677777777766666

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.82  E-value=0.8  Score=39.48  Aligned_cols=109  Identities=9%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeec------CCCceEEEEeCC----CCeEEEEcC------
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSA------HDDAVNSVVSSS----EGLIFTGSA------  215 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~----~~~l~~~~~------  215 (368)
                      -.....++|.|+++++++-...+.|++++..+++..  ..+..      ....+..|+++|    ++.|+....      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345679999999986665443347988886555432  22221      235567999999    454444432      


Q ss_pred             -------CCeEEEEEcCCCCC-C-cccccceeec-cccccEEEEEEcCCCCEEEEec
Q 047325          216 -------DGTVKVWKREQHGK-G-TKHSLAQTLL-KQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       216 -------dg~i~i~d~~~~~~-~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                             ...|.-++...... . ........+. ........|+|.|+|.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   23566666543211 0 0111111111 1123478999999998777644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.024  Score=46.52  Aligned_cols=109  Identities=8%  Similarity=0.036  Sum_probs=65.6

Q ss_pred             CCEEEEEeCCCeEEEEeecCCCccccccCCc-cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325           92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY  170 (368)
Q Consensus        92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  170 (368)
                      ++.++.++.||.|.-.|.++++......... .+...                         ......    ..++..++
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-------------------------~~~~~~----~~~~~~~v   60 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-------------------------IQEPSR----LETYETLI   60 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-------------------------CCCSCT----TTSSEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-------------------------ecCCcc----ccCCcEEE
Confidence            5688999999999999999988766654430 00000                         000000    01223333


Q ss_pred             EE-eCCCcEEEEEccCCeEEEEeec----CCCceEEE---Ee------CCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          171 TA-SWDRTFKVWRISDSKCLESVSA----HDDAVNSV---VS------SSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       171 ~~-~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~---~~------~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      .. ..||.|..+|..+|.....+..    ...++..-   ..      +.++.+++|+.+|.+.-.|++++..
T Consensus        61 v~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           61 IEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             ECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             EEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            33 5799999999988865544432    11222210   01      1456899999999999999988754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.62  E-value=0.38  Score=39.95  Aligned_cols=145  Identities=9%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             ceEEEEeCCCCe-EEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCC---CCEEEEec-C-------C
Q 047325          198 AVNSVVSSSEGL-IFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSS---RSIVYCGS-S-------D  264 (368)
Q Consensus       198 ~v~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-~-------d  264 (368)
                      ....+++.|++. |+++...|.|++++...... .... ..............++++|+   +..|.... .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            457899999996 88888899999998532100 0000 00111223456789999995   44444442 2       2


Q ss_pred             CcEEEEeCCCc-------ccccee-----eeccceEEEEEEeCCCEEEEeeC-------------CCeEEEEecCCCc--
Q 047325          265 GLVNFWEREKQ-------LSHGGV-----LKGHKLAVLCLAAAGKLVFSGSA-------------DKTICVWRRDGAI--  317 (368)
Q Consensus       265 g~i~i~d~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~--  317 (368)
                      ..|..|++...       +.+...     ...|...-+.+.+||.+.++-+.             .|.|.-++.+...  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666665422       111011     12354555888899966655433             2456666654320  


Q ss_pred             ----------eeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325          318 ----------HTCLSVLTGHTGPVKCLAVEE-DRDSSSS  345 (368)
Q Consensus       318 ----------~~~~~~~~~h~~~v~~l~~~~-~~~~~~~  345 (368)
                                ...+.. .+|. ....++|+| ++.+.++
T Consensus       178 ~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence                      111111 2333 367899999 6765544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.57  E-value=0.8  Score=37.72  Aligned_cols=110  Identities=5%  Similarity=0.017  Sum_probs=65.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEe----ecCCCceEEEEeCCC----CeEEEE---cCCCeE
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESV----SAHDDAVNSVVSSSE----GLIFTG---SADGTV  219 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~----~~l~~~---~~dg~i  219 (368)
                      .-.....++|.|++.++++--..|.|++++...++..  ..+    .........|+++|+    +.|+..   ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            4456789999999986666544899999987655532  222    123456789999995    544433   345567


Q ss_pred             EEEEcCCCC----CC-cccccceeec-cccccEEEEEEcCCCCEEEEec
Q 047325          220 KVWKREQHG----KG-TKHSLAQTLL-KQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       220 ~i~d~~~~~----~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .-|.+....    .. ........+. ........|.|.|++.+.++.+
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            667665421    10 1111111121 1112345799999998777643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.34  E-value=1.2  Score=38.43  Aligned_cols=103  Identities=9%  Similarity=0.147  Sum_probs=58.7

Q ss_pred             CceEEEEeCCCCeEEEEcCCC-eEEEEEcCCCCCCcccccceeec------cccccEEEEEEcCC---CCEEEEecC---
Q 047325          197 DAVNSVVSSSEGLIFTGSADG-TVKVWKREQHGKGTKHSLAQTLL------KQECAVTALVVSSS---RSIVYCGSS---  263 (368)
Q Consensus       197 ~~v~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~---~~~l~~~~~---  263 (368)
                      .....+++.|+|.|+++...+ .|++++...+..    .....+.      ..+..+..++++|+   +..|.....   
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            356799999999555556654 788887643211    1111111      13567889999995   455544432   


Q ss_pred             ----------CCcEEEEeCCCc-------cccceee---eccceEEEEEEeCCCEEEEee
Q 047325          264 ----------DGLVNFWEREKQ-------LSHGGVL---KGHKLAVLCLAAAGKLVFSGS  303 (368)
Q Consensus       264 ----------dg~i~i~d~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~  303 (368)
                                ...|.-|+....       +.+...+   ..|...-+.|.+||.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      134555554321       1111111   246677788889998777644

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.12  E-value=0.98  Score=36.03  Aligned_cols=183  Identities=17%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           83 GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        83 ~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      ..|..++.-....+.-. ||.|..|-.....+......                                ....|..++.
T Consensus        24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~--------------------------------~~~~i~~ia~   70 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA--------------------------------TQSGVDAIAA   70 (282)
T ss_dssp             SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG--------------------------------GGSCCCEEEE
T ss_pred             CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc--------------------------------CCCCEEEEEe
Confidence            36777777655544446 99999998665433221000                                2234666665


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccc
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ  242 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  242 (368)
                      .... .++. . ||.|..|-....-.+..-..-...|..++...+..++..  ||.|+.|-.....+..      .....
T Consensus        71 G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg------~~~~~  139 (282)
T 3qhy_B           71 GNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTT------VPAEA  139 (282)
T ss_dssp             CSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTS------CCGGG
T ss_pred             CCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCC------CCccC
Confidence            4432 2333 4 888888875432111111111346777777655544443  9999999876543311      11112


Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      ...|..++...+...+  -. ||.|+.|-....-.+. ....-...+..++......+.- .||.|+.|-..
T Consensus       140 ~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n  206 (282)
T 3qhy_B          140 QSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDN  206 (282)
T ss_dssp             GSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECC
T ss_pred             CCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECC
Confidence            3457777765443232  23 7999999765422221 1111134566777655544444 69999999654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.99  E-value=3.1  Score=41.16  Aligned_cols=186  Identities=10%  Similarity=0.135  Sum_probs=104.6

Q ss_pred             CCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325           63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY  139 (368)
Q Consensus        63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (368)
                      ..++.|+|+...  +..+.- ..+|.-..|- .+.|+-.+ +..|.-|+++............                 
T Consensus        85 g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~-----------------  145 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH-----------------  145 (1630)
T ss_pred             CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcc-----------------
Confidence            678999998643  333333 3456666665 55665555 5589999997533211111000                 


Q ss_pred             eEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC---Ce
Q 047325          140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE---GL  209 (368)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~  209 (368)
                              ..+  ....|..-..+++.+.++..|       -.|.+.+|..+.+ ..+.+.+|......+.....   ..
T Consensus       146 --------~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~  214 (1630)
T 1xi4_A          146 --------SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEEST  214 (1630)
T ss_pred             --------hhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCce
Confidence                    000  134566666677777665443       3478899987543 34456666554433333211   12


Q ss_pred             EEEEcC----CCeEEEEEcCCC--CC-Ccccccceeecc---ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325          210 IFTGSA----DGTVKVWKREQH--GK-GTKHSLAQTLLK---QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       210 l~~~~~----dg~i~i~d~~~~--~~-~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      +++-..    .+.++|-++...  +. ....+.......   ...-..++..++....+..-+.-|.+++||+.++..+
T Consensus       215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence            332221    378999998543  11 111111111111   2344556778887788888889999999999987665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.91  E-value=1.2  Score=35.93  Aligned_cols=159  Identities=9%  Similarity=0.043  Sum_probs=80.4

Q ss_pred             EEcCCCCEEEEEeCC--------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc----CCCeEEE
Q 047325          161 SLDQDCGLLYTASWD--------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS----ADGTVKV  221 (368)
Q Consensus       161 ~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~----~dg~i~i  221 (368)
                      -+++++..|+-+...              ..|+..++..++... +..  ....  .+++++ .|+-..    .+..|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPCI--YASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCEE--EEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCcc--EEEEeCCEEEEEeecCCCCceEEE
Confidence            346667766655432              367777776654332 221  1222  445555 444433    3445555


Q ss_pred             EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEE
Q 047325          222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF  300 (368)
Q Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  300 (368)
                      .++....       ...+..+..    ..++|+++.|+-.+. ...|...++...... ....+ ... ..+.|++.+|+
T Consensus       134 ~~~dGs~-------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~~-~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          134 IRIDGEE-------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYDC-NCY-KPVVLDDTNVY  199 (302)
T ss_dssp             EETTSCC-------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEECS-CEE-EEEEEETTEEE
T ss_pred             EECCCCC-------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeCC-Ccc-ceeeecCCEEE
Confidence            5655321       122222221    346777877775554 678888888765432 22222 222 23568888877


Q ss_pred             EeeCC--CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325          301 SGSAD--KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS  345 (368)
Q Consensus       301 ~~~~d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  345 (368)
                      -...+  ..|..-+++......   +.  ...+  ..|+|++..+..
T Consensus       200 ~t~~~~~~~I~~~~ldG~~~~~---Lt--~~~~--~~~~~~g~~Iy~  239 (302)
T 3s25_A          200 YMDVNRDNAIVHVNINNPNPVV---LT--EANI--EHYNVYGSLIFY  239 (302)
T ss_dssp             EEEGGGTTEEEEECSSSCCCEE---CS--CSCE--EEEEEETTEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCeEE---Ee--CCCc--ceEEECCCEEEE
Confidence            65433  356565665543222   22  1223  236677766553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.81  E-value=2.3  Score=38.97  Aligned_cols=147  Identities=9%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             CCCCEEEEEeCC----CcEEEEEccCCeEEEEe-e-------cCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEc
Q 047325          164 QDCGLLYTASWD----RTFKVWRISDSKCLESV-S-------AHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKR  224 (368)
Q Consensus       164 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~  224 (368)
                      .++..++.|+.+    ..+.+||+.+++-...- .       .....-..+.+..++ .++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46889998876533222 1       111122233332145 66666643      35788888


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC--cEEEEeCCCcccccee--------eeccceEEEEEEe
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG--LVNFWEREKQLSHGGV--------LKGHKLAVLCLAA  294 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~  294 (368)
                      .+..    .............. +++...++++++.|+.++  .+.+||..+..-....        ...|.  ...+..
T Consensus       476 ~t~~----W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~--a~v~~~  548 (695)
T 2zwa_A          476 KTRE----WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA--GLEFDP  548 (695)
T ss_dssp             TTTE----EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC--EEEEET
T ss_pred             CCCc----EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee--EEEEeC
Confidence            7531    11111111111222 223323778888887655  6899998764321111        11121  122333


Q ss_pred             C-CCEEEEeeC--C-----CeEEEEecCCCc
Q 047325          295 A-GKLVFSGSA--D-----KTICVWRRDGAI  317 (368)
Q Consensus       295 ~-~~~l~~~~~--d-----g~i~iw~~~~~~  317 (368)
                      + +++++.|+.  +     +.+.+||+.+..
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            3 667777876  2     458899988775

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=94.77  E-value=1.6  Score=36.71  Aligned_cols=241  Identities=12%  Similarity=0.092  Sum_probs=115.3

Q ss_pred             ecCCEEEEccCCCcEEEEcCCc--ce--------ec---cc-CCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           52 ASKDLLYTGSDSKNIRVWKNLK--EF--------CG---FK-ASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        52 ~~~~~l~s~~~dg~i~iw~~~~--~~--------~~---~~-~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      +..+.++.-..||+|..|=...  ++        ..   .. .....+..++-.....+.-..||.|..|-.....+.-.
T Consensus         8 ~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~   87 (389)
T 3kci_A            8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI   87 (389)
T ss_dssp             -------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred             cCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence            3445666667788888883211  00        00   00 01224555655577777788899999997654322111


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-----------
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-----------  186 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------  186 (368)
                      -........                    ..+-.-....+..+++.....+.++-..||.|..|-....           
T Consensus        88 g~~~~~~~p--------------------~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~  147 (389)
T 3kci_A           88 GGTESVSTP--------------------TLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC  147 (389)
T ss_dssp             SSSCCEEEE--------------------EECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred             CCcCCccCC--------------------EEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC
Confidence            100000000                    0000001223455666666667777788899999954321           


Q ss_pred             eEEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC------cccccceeeccccccEEEEEEcCCCCEEE
Q 047325          187 KCLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG------TKHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       187 ~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                      .....+.. ....|..++.... ..++-..+|.|+.|=.....+.      ....+..........|..++......+.+
T Consensus       148 ~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~  226 (389)
T 3kci_A          148 DRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL  226 (389)
T ss_dssp             EEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE
T ss_pred             cCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE
Confidence            11111221 2235667766543 4444567999999976432210      00111111111233566776654345666


Q ss_pred             EecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          260 CGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       260 ~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      +-..||.|+.|-....-.           +..........+..++......++-..||.|+.|-.
T Consensus       227 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~  291 (389)
T 3kci_A          227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK  291 (389)
T ss_dssp             EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             EEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeC
Confidence            667889999997542111           100111112246666666666666678999999954

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.41  E-value=2.4  Score=37.21  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             EEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC-----C-cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          200 NSVVSSSEG--LIFTGSADGTVKVWKREQHGK-----G-TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       200 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-----~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ..+..+|||  .++.|-.+.++.++|++....     . .....+.............+|.++|+-..+-.-|..|.-|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            457789999  445555688999999974211     0 00011111112334567789999996666777999999999


Q ss_pred             CCCcc---------ccceeeeccceEEEEE-------EeCCCEEEEee---CCCeE----------EEEecCCCceeeeE
Q 047325          272 REKQL---------SHGGVLKGHKLAVLCL-------AAAGKLVFSGS---ADKTI----------CVWRRDGAIHTCLS  322 (368)
Q Consensus       272 ~~~~~---------~~~~~~~~~~~~~~~~-------~~~~~~l~~~~---~dg~i----------~iw~~~~~~~~~~~  322 (368)
                      +....         .....+.-|-.+-.-.       .++|++|++..   .|..+          .+.|+...+.+++.
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~  485 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVH  485 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceEEEe
Confidence            87431         1222233333332222       35788888874   35433          67788776666666


Q ss_pred             eeeccccCeeEEEE
Q 047325          323 VLTGHTGPVKCLAV  336 (368)
Q Consensus       323 ~~~~h~~~v~~l~~  336 (368)
                      ......+|=.++.+
T Consensus       486 D~P~~~EPHda~~v  499 (638)
T 3sbq_A          486 DGPTFAEPHDCIMA  499 (638)
T ss_dssp             EEEESSCCCCEEEE
T ss_pred             cCCCCCCCcceEEe
Confidence            65544444333333

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.64  E-value=3.4  Score=33.31  Aligned_cols=138  Identities=13%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             EEcCCCCEEEEEe----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccc
Q 047325          161 SLDQDCGLLYTAS----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHS  234 (368)
Q Consensus       161 ~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~  234 (368)
                      .++++++.|+-..    .+..|...++... ....+..+..    ..+++++ .|+ +......|...++.....     
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-----  179 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-----  179 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE-----
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE-----
Confidence            5666777777665    2345555666533 3334433322    3445566 444 444467888888764321     


Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEecCC--CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEE
Q 047325          235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD--GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICV  310 (368)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i  310 (368)
                        ..+..  +... ..+.|++.+|+-...+  ..|..-++......  .+...  .+..++|++++|+-+.  ..+.|..
T Consensus       180 --~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt~~--~~~~~~~~g~~Iy~~~~~~~~~i~~  250 (302)
T 3s25_A          180 --ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLTEA--NIEHYNVYGSLIFYQRGGDNPALCV  250 (302)
T ss_dssp             --EEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECSCS--CEEEEEEETTEEEEEECSSSCEEEE
T ss_pred             --EEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEeCC--CcceEEECCCEEEEEECCCCcEEEE
Confidence              11111  1122 2356888887765433  35666666654322  22222  2356899998887653  3456777


Q ss_pred             EecCCCc
Q 047325          311 WRRDGAI  317 (368)
Q Consensus       311 w~~~~~~  317 (368)
                      -+++...
T Consensus       251 ~~~DG~~  257 (302)
T 3s25_A          251 VKNDGTG  257 (302)
T ss_dssp             EETTSCC
T ss_pred             EECCCCc
Confidence            7776653

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=91.80  E-value=5.2  Score=33.59  Aligned_cols=244  Identities=11%  Similarity=0.117  Sum_probs=124.8

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEEcCCc----------c---eeccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVWKNLK----------E---FCGFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~----------~---~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~  109 (368)
                      .|..++......+.-..||.|..|-...          .   ..... .....+..++..  ....+.-..||.|..|-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~  133 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE  133 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence            4666776666666667889999994221          0   00111 122334445554  566777788999999976


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-Ce
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-SK  187 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~  187 (368)
                      ....+.-........     .                ...... ....|..++..  ....++-..+|.|..|-... ++
T Consensus       134 n~~GqLG~g~~~~~~-----~----------------p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gq  190 (389)
T 3kci_A          134 AEDGKLGHGNRSPCD-----R----------------PRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGR  190 (389)
T ss_dssp             CGGGTTCSSSCCCEE-----E----------------EEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGT
T ss_pred             CCCCcCCCCCCccCc-----C----------------CeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCC
Confidence            543221111000000     0                000000 12245555543  34555666788999996432 10


Q ss_pred             ----------EEEEee-cCCCceEEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCc-----ccccceeec-cccccEEEE
Q 047325          188 ----------CLESVS-AHDDAVNSVVSSSE-GLIFTGSADGTVKVWKREQHGKGT-----KHSLAQTLL-KQECAVTAL  249 (368)
Q Consensus       188 ----------~~~~~~-~~~~~v~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~-~~~~~i~~~  249 (368)
                                ....+. .....|..++.... ...++-..||.|+.|-.....+..     ......... .....|..+
T Consensus       191 LG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v  270 (389)
T 3kci_A          191 LGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKV  270 (389)
T ss_dssp             TCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred             cCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEE
Confidence                      111111 12345777776542 355566789999999754322210     000111111 112246666


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +...  .+.+.-..+|.|+.|-....-.           +..........+..++......++-..||.|+.|=..
T Consensus       271 ~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          271 ECGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             EEET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred             eCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCC
Confidence            6543  3444456789999997542111           1011111123466777766666667889999999653

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=91.10  E-value=6.3  Score=33.28  Aligned_cols=244  Identities=12%  Similarity=0.116  Sum_probs=125.2

Q ss_pred             CcEEEEEecCCEEEEccCC-CcEEEEcCCc--------------ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325           45 GHIYSLAASKDLLYTGSDS-KNIRVWKNLK--------------EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI  109 (368)
Q Consensus        45 ~~i~~~~~~~~~l~s~~~d-g~i~iw~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~  109 (368)
                      ..|..++......+.-..| +.|+.|-...              +..........|..++.-....+.-..||.|..|-.
T Consensus        68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~  147 (406)
T 4d9s_A           68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR  147 (406)
T ss_dssp             SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCC
Confidence            3688888877744434444 5999994211              001111123357777766777777889999999976


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS---  186 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  186 (368)
                      ....+.-......     ...+.             ....  -....|..++..  ..+.++-..+|.|..|-....   
T Consensus       148 n~~GqLG~g~~~~-----~~~p~-------------~v~~--~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gql  205 (406)
T 4d9s_A          148 NQNGQLGLGDTED-----SLVPQ-------------KIQA--FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNL  205 (406)
T ss_dssp             CTTSTTCSSSCCC-----EEEEE-------------ECGG--GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCccCCCCCCCC-----cccce-------------Eecc--cCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCC
Confidence            5443221111000     00000             0000  012245555553  335555667888999864321   


Q ss_pred             -------eE-EEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc-----cccceeec-cccccEEEEEE
Q 047325          187 -------KC-LESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK-----HSLAQTLL-KQECAVTALVV  251 (368)
Q Consensus       187 -------~~-~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~  251 (368)
                             .. ...+.. ....|..++.... ..++-..+|.|+.|-.....+...     ......+. .....|..++.
T Consensus       206 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~  284 (406)
T 4d9s_A          206 GLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG  284 (406)
T ss_dssp             CSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred             CCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe
Confidence                   11 111111 2245666665444 344446789999997654332100     00011111 11234666655


Q ss_pred             cCCCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          252 SSSRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       252 ~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      .  ..+.+.-..||.|+.|-....-.           +..........+..++.-....++-..||.|+.|=.
T Consensus       285 G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~  355 (406)
T 4d9s_A          285 G--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR  355 (406)
T ss_dssp             C--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             c--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecC
Confidence            4  33444556789999996442111           111111123356677776666666778999999964

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=90.38  E-value=7.4  Score=32.86  Aligned_cols=245  Identities=8%  Similarity=0.057  Sum_probs=125.0

Q ss_pred             CCcEEEEEecCCEEEEccCCCcEEEEcCCc-----------c--eecc-cCCCCCeeEEEEeCCEEEEEeCC-CeEEEEe
Q 047325           44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLK-----------E--FCGF-KASSGLVKAIVISGEKIFTGHQD-GKIRVWK  108 (368)
Q Consensus        44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~-----------~--~~~~-~~~~~~v~~~~~~~~~l~s~~~d-g~i~vw~  108 (368)
                      ...|..++......+.-..||.|..|=...           .  .... ......|..++.-....+.-..| +.|..|-
T Consensus        15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG   94 (406)
T 4d9s_A           15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG   94 (406)
T ss_dssp             CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence            346788888777666666789999994211           0  0011 11233577777666665555666 4999997


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K  187 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~  187 (368)
                      .....+.-.-....     ...+.             +..  .-....|..++..  ..+.++-..||.|..|-.... +
T Consensus        95 ~n~~GqLG~g~~~~-----~~~p~-------------~v~--~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~Gq  152 (406)
T 4d9s_A           95 WGDFGRLGHGNSSD-----LFTPL-------------PIK--ALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQ  152 (406)
T ss_dssp             CCGGGTTCSSSCCC-----EEEEE-------------ECG--GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred             CCCCcCCCCCCCCc-----cccce-------------Eec--ccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCcc
Confidence            54332211110000     00000             000  0022356666653  345566678899999965321 1


Q ss_pred             ----------EEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC------cccccceeeccccccEEEEE
Q 047325          188 ----------CLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG------TKHSLAQTLLKQECAVTALV  250 (368)
Q Consensus       188 ----------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~i~~~~  250 (368)
                                ....+.. ....|..++.... ..++-..+|.|+.|-.....+.      ....+..........|..++
T Consensus       153 LG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va  231 (406)
T 4d9s_A          153 LGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA  231 (406)
T ss_dssp             TCSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE
T ss_pred             CCCCCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE
Confidence                      1111211 2235677766544 4444567899999975543221      01111111111223466665


Q ss_pred             EcCCCCEEEEecCCCcEEEEeCCCcccc-----------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          251 VSSSRSIVYCGSSDGLVNFWEREKQLSH-----------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       251 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ..  ..+.+.-..+|.|+.|-....-.+           ..........+..++.-....++-..||.|+.|=.
T Consensus       232 ~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~  303 (406)
T 4d9s_A          232 CG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGW  303 (406)
T ss_dssp             EC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             EC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeC
Confidence            54  334455567899999974421111           00111112346667766666666678999999954

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=89.67  E-value=8.7  Score=32.60  Aligned_cols=243  Identities=7%  Similarity=0.004  Sum_probs=125.5

Q ss_pred             cEEEEEecCCEEEEccCCCcEEEEcCCc--c------------eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee--
Q 047325           46 HIYSLAASKDLLYTGSDSKNIRVWKNLK--E------------FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI--  109 (368)
Q Consensus        46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~--  109 (368)
                      .|..++......+.-..||.|..|-...  +            ....-.....|..++......+.-..||.|..|-.  
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~  155 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR  155 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence            4778887777666777899999994321  0            00000123456677666777777889999999985  


Q ss_pred             cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325          110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS---  186 (368)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  186 (368)
                      ......-.......     ..+               ..  ......|..++...  .+.++-..+|.|..|-....   
T Consensus       156 n~~GqlG~~~~~~~-----~~p---------------~~--~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqL  211 (423)
T 3mvd_K          156 DSHGNMGLTIDGNK-----RTP---------------ID--LMEGTVCCSIASGA--DHLVILTTAGKVFTVGCAEQGQL  211 (423)
T ss_dssp             CSSSEEESBTTBCE-----EEE---------------EE--SSTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCCCcCcCCCCCC-----cee---------------eE--ecCCCcEEEEecCC--CeEEEEecCCeEEEeeCCcCCcc
Confidence            32221111000000     000               00  01234566666543  35556667899999964321   


Q ss_pred             --------------------eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc-----cccceeecc
Q 047325          187 --------------------KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK-----HSLAQTLLK  241 (368)
Q Consensus       187 --------------------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~  241 (368)
                                          .+..........|..++......++.-..+|.|+.|-.....+...     .........
T Consensus       212 G~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~  291 (423)
T 3mvd_K          212 GRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT  291 (423)
T ss_dssp             SSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE
T ss_pred             CCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc
Confidence                                1111111122345555554333444446899999997654332110     000000011


Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-----------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-----------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICV  310 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  310 (368)
                      ....|..++..  ..+.+.-..||.|+.|-....-.+           ......-...+..++......++-..||.|+.
T Consensus       292 ~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~  369 (423)
T 3mvd_K          292 ELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYS  369 (423)
T ss_dssp             CCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             CCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEE
Confidence            12346666554  344455567899999975321100           01111111256677766666555678999999


Q ss_pred             EecC
Q 047325          311 WRRD  314 (368)
Q Consensus       311 w~~~  314 (368)
                      |=..
T Consensus       370 wG~n  373 (423)
T 3mvd_K          370 WGSG  373 (423)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.13  E-value=15  Score=35.11  Aligned_cols=40  Identities=23%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (368)
                      ...+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3457778888888899999999999999999999887754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.56  E-value=23  Score=30.53  Aligned_cols=109  Identities=14%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc-eeec-----cccccEEEEEEcCC----CCEEEEecC-
Q 047325          197 DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA-QTLL-----KQECAVTALVVSSS----RSIVYCGSS-  263 (368)
Q Consensus       197 ~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~~~~----~~~l~~~~~-  263 (368)
                      .....|++.|++  .|+++...|.|++++...........-+ ..+.     ..+.....++++|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            345789999998  4888888999999975422100000000 0111     12567889999996    333333221 


Q ss_pred             -C----------CcEEEEeCCCc----------ccccee---eeccceEEEEEEeCCCEEEEeeCC
Q 047325          264 -D----------GLVNFWEREKQ----------LSHGGV---LKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       264 -d----------g~i~i~d~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                       +          ..|.-|.+...          +.+...   ...|...-+.|.|||.+.++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          13444555321          111111   125777778899999877765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.25  E-value=11  Score=33.27  Aligned_cols=102  Identities=14%  Similarity=0.021  Sum_probs=60.2

Q ss_pred             ccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccc--------cc-----eeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325          244 CAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLS--------HG-----GVLKGHKLAVLCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       244 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  309 (368)
                      .....+..+|||+++++++ .+.++.++|+++-..        +.     ....+-...-+.|.++|....+-.-|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            4456788999999887755 678999999874211        00     111122222366777785556667899999


Q ss_pred             EEecCCC--------ceeeeEeeeccccCeeEEE-----EecCCeeeec
Q 047325          310 VWRRDGA--------IHTCLSVLTGHTGPVKCLA-----VEEDRDSSSS  345 (368)
Q Consensus       310 iw~~~~~--------~~~~~~~~~~h~~~v~~l~-----~~~~~~~~~~  345 (368)
                      .|+++..        ....+..+.-|-++-.-.+     -.++|++|.+
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~  451 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVA  451 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEE
Confidence            9998642        1234555555554322221     2456665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.46  E-value=25  Score=30.27  Aligned_cols=109  Identities=6%  Similarity=0.028  Sum_probs=60.7

Q ss_pred             CCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCC---eEEEEee---------cCCCceEEEEeCCC----CeEEEE-cC-
Q 047325          155 DAVSCMSLDQDCG-LLYTASWDRTFKVWRISDS---KCLESVS---------AHDDAVNSVVSSSE----GLIFTG-SA-  215 (368)
Q Consensus       155 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~----~~l~~~-~~-  215 (368)
                      ..-+.|+|.|++. .|+++...|.|++++....   +.+..+.         ........|+++|+    +.|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999986 5666778899999975422   1222221         11356788999997    433332 21 


Q ss_pred             -C----------CeEEEEEcCCCCC--C--cccccceeec--cccccEEEEEEcCCCCEEEEecC
Q 047325          216 -D----------GTVKVWKREQHGK--G--TKHSLAQTLL--KQECAVTALVVSSSRSIVYCGSS  263 (368)
Q Consensus       216 -d----------g~i~i~d~~~~~~--~--~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  263 (368)
                       +          ..|.-|.+.....  .  .....+....  ........|+|.||+.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1455566643211  0  0111111111  12234678999999987666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (213), Expect = 1e-19
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG- 208
           +  H+  V  +SL  D  L  + + D + K+W + +  C ++ + H+  +N++     G 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239

Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268
              TGS D T +++      +   +S         C +T++  S S  ++  G  D   N
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDN----IICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 269 FWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVW 311
            W+  K     GVL GH   V CL     G  V +GS D  + +W
Sbjct: 296 VWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 35/173 (20%)

Query: 55  DLLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110
            L  +G+   + ++W  +       F      + AI     G    TG  D   R++ + 
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY 170
              + +                                        ++ +S  +   LL 
Sbjct: 257 ADQELMTYS------------------------------HDNIICGITSVSFSKSGRLLL 286

Query: 171 TASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVW 222
               D    VW    +     ++ HD+ V+ +  + +G  + TGS D  +K+W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 6/231 (2%)

Query: 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRT 177
           ++A    TL  I  ++I P   I++R  RT     H   +  M    D  LL +AS D  
Sbjct: 22  RKACADATLSQI-TNNIDPVGRIQMRTRRT--LRGHLAKIYAMHWGTDSRLLVSASQDGK 78

Query: 178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ 237
             +W    +  + ++      V +   +  G          +      +  +G      +
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-R 137

Query: 238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297
            L      ++         IV          +     Q +         +  L LA   +
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197

Query: 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS 348
           L  SG+ D +  +W  D     C    TGH   +  +    + ++ ++ S 
Sbjct: 198 LFVSGACDASAKLW--DVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 47  IYSLAASKD--LLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQ 100
           I S++ SK   LL  G D  N  VW                 V  + ++  G  + TG  
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 101 DGKIRVW 107
           D  +++W
Sbjct: 333 DSFLKIW 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.2 bits (196), Expect = 2e-17
 Identities = 48/320 (15%), Positives = 100/320 (31%), Gaps = 46/320 (14%)

Query: 31  LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVW--KNLKEFCGFKASSGLVK 86
           +P+     +L      +  +       ++ + S+   I+VW  +        K  +  V+
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 87  AIVISGEKIFTGHQDGKIRVWKISPKNQS----------VHKRAGTLPTLKDIFKSSIKP 136
            I               + +     +                    +P    I  +S   
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 137 SNYIEVRRHRTALWI--RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
           +  +   +    +     H + V  +  +QD  L+ + S D+T +VW ++  +C   +  
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 195 HDDAVNSV---------------------VSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233
           H   V  +                            + +GS D T+K+W           
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------TG 237

Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA 293
               TL+  +  V  ++  S    +   + D  +  W+ + +      L  H+  V  L 
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLD 296

Query: 294 --AAGKLVFSGSADKTICVW 311
                  V +GS D+T+ VW
Sbjct: 297 FHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (176), Expect = 6e-15
 Identities = 42/182 (23%), Positives = 66/182 (36%), Gaps = 19/182 (10%)

Query: 91  SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150
            G  I +   D  +RVW ++                K   +        I      +   
Sbjct: 154 DGTLIASCSNDQTVRVWVVAT------------KECKAELREHRHVVECISWAPESSYSS 201

Query: 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L 209
           I  +         +    L + S D+T K+W +S   CL ++  HD+ V  V+  S G  
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
           I + + D T++VW  +           +TL   E  VT+L    +   V  GS D  V  
Sbjct: 262 ILSCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 270 WE 271
           WE
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 25/187 (13%)

Query: 46  HIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIR 105
            +        L+ + S+ + +RVW    + C                +     H+     
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKEC----------------KAELREHRHVVEC 190

Query: 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS----NYIEVRRHRTALWIR----HSDAV 157
           +      + S    A    T K         S      I++    T + +     H + V
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSAD 216
             +        + + + D+T +VW   + +C+++++AH+  V S+        + TGS D
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 217 GTVKVWK 223
            TVKVW+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 9e-12
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
           H   V+ +       ++ +AS D T KVW         ++  H D+V  +     G +  
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
                +       +          +T+   +  V+++ +  +   +   S D  +  WE 
Sbjct: 76  -----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 273 EKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP 330
           +          GH+  V  +     G L+ S S D+T+ VW        C + L  H   
Sbjct: 131 QTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELREHRHV 187

Query: 331 VKCLAVEED--------RDSSSSTSSCAQRWIVYSGSLDKS 363
           V+C++   +           S +  S      + SGS DK+
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 42/284 (14%)

Query: 78  FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135
                  V  ++       + +  +D  I+VW     +     +  T       F  S K
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 136 PSNYIEVRRHRTALWIRHSDAVSCM----------SLDQDCGLLYTASWDRTFKVWRISD 185
                           +  + +  M          S+  +   + +AS D+T K+W +  
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244
             C+++ + H + V  V  + +G LI + S D TV+VW                L +   
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA------TKECKAELREHRH 186

Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304
            V  +  +   S      + G       +                      G  + SGS 
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKP---------------------GPFLLSGSR 225

Query: 305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS 348
           DKTI +W  D +   CL  L GH   V+ +          S + 
Sbjct: 226 DKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (189), Expect = 2e-16
 Identities = 53/358 (14%), Positives = 108/358 (30%), Gaps = 54/358 (15%)

Query: 44  EGH---IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISG-------- 92
           + H   I+S++A      + S    ++VW N                +  SG        
Sbjct: 11  KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 93  ---------EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL------KDIFKSSIKPS 137
                      + T    G +  ++I+ ++++       L  L         +      S
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197
           N   +     A  ++ +  +       D     T +W  T ++        +ES      
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG-----TVESPMTPSQ 185

Query: 198 AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI 257
              SV  S  GLI TG  +GTV++ +              +++    ++ ++  S   S+
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 258 VYCGSSDGLVNFW---------------EREKQLSHGGVLKGHKLAVLCLA--AAGKLVF 300
           +                                         H   V+ L+   +G+ + 
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC----LAVEEDRDSSSSTSSCAQRWI 354
           S   D  +  W  D      ++ L  H   ++     LAV+E  DS +       +++
Sbjct: 306 SAGWDGKLRFW--DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 36/324 (11%), Positives = 75/324 (23%), Gaps = 59/324 (18%)

Query: 78  FKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137
            KA    + ++        +   DG ++VW                    D      +  
Sbjct: 10  GKAHDADIFSVSACNSFTVSCSGDGYLKVW--------------------DNKLLDNENP 49

Query: 138 NYIEVRRHRTALWIRHSDAVSCMSLD-QDCGLLYTASWDRTFKVWRISDSKCLESVSAHD 196
                        + H D +  +  D  +  L+ T S+      +RI+     + V    
Sbjct: 50  KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109

Query: 197 DAVNSVVSSSEG----------------LIFTGSADGTVKVW------------KREQHG 228
             +                          +      GT  +W                  
Sbjct: 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169

Query: 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA 288
                   ++ +      T++ +S    ++  G ++G V   E             H + 
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMI 228

Query: 289 -------VLCLAAAGKLVFSGSADKTICVWRR-DGAIHTCLSVLTGHTGPVKCLAVEEDR 340
                   +  +  G L+       +       +      +  L+  T   +    E   
Sbjct: 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288

Query: 341 DSS-SSTSSCAQRWIVYSGSLDKS 363
            S   S S       + S   D  
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGK 312

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 5/85 (5%)

Query: 281 VLKGHKLAVLCLAAAGKLVFSGSADKTICVW--RRDGAIHTCLSVLTGHTGPVKCLAVEE 338
             K H   +  ++A      S S D  + VW  +     +      +          V+ 
Sbjct: 9   AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 339 DRDSSSSTSSCAQRWIVYSGSLDKS 363
            +          +  +V + S    
Sbjct: 69  LQAIERDAF---ELCLVATTSFSGD 90

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 6e-15
 Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 28/284 (9%)

Query: 47  IYSLAASKDLLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKI 104
           +Y L      + +G     I++W    L+        +G V  +      I TG  D  +
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77

Query: 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY---------IEVRRHRTALWIRHSD 155
           RVW ++               L   F + +  +           +      T   +    
Sbjct: 78  RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137

Query: 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSA 215
             +   +D D   + +AS DRT KVW  S  + + +++ H   +   +   + L+ +GS+
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA-CLQYRDRLVVSGSS 196

Query: 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275
           D T+++W  E           + L++        +VS        G+ DG +  W+    
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS--------GAYDGKIKVWDLVAA 248

Query: 276 LSHGG--------VLKGHKLAVLCLAAAGKLVFSGSADKTICVW 311
           L             L  H   V  L      + S S D TI +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 7e-10
 Identities = 65/299 (21%), Positives = 109/299 (36%), Gaps = 24/299 (8%)

Query: 70  KNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129
            +L+       +S  V  +    +KI +G +D  I++W  +           T   L   
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 130 FKSSIKPSNYIEVRRHRTAL------WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183
           +   +  +   +       +              + + L  + G++ T S DR+  VW +
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 184 SDSKCLESVSAHD--DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK 241
           +    +          A  +VV   +  I + S D T+KVW              +TL  
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS------TCEFVRTLNG 176

Query: 242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS 301
            +  +    +     +V  GSSD  +  W+ E   +   VL+GH+  V C+    K + S
Sbjct: 177 HKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVS 233

Query: 302 GSADKTICVW-------RRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW 353
           G+ D  I VW        R  A   CL  L  H+G V  L  +E +  SSS       W
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332
              L            V CL    + + SG  D TI +W  D     C  +LTGHTG V 
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIW--DKNTLECKRILTGHTGSVL 59

Query: 333 CLAVEEDRDSSSSTSSCAQRWIVYSG 358
           CL  +E    + S+ S  + W V +G
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTG 85

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 11/216 (5%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
            S  V C+  D     + +   D T K+W  +  +C   ++ H  +V  +      +I  
Sbjct: 14  TSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
            S                T     + +L                +         V     
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-------MMVTCSKDRSIAVWDMAS 124

Query: 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332
              ++   VL GH+ AV  +    K + S S D+TI VW  + +    +  L GH   + 
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW--NTSTCEFVRTLNGHKRGIA 182

Query: 333 CLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368
           CL   +    S S+ +  + W +  G+  +  +   
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 218

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 6e-06
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208
           +   +        L     L+ + S D T ++W I    CL  +  H++ +   +     
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNK 229

Query: 209 LIFTGSADGTVKVW---KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265
            I +G+ DG +KVW                 +TL++    V  L     +  +   S D 
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDD 287

Query: 266 LVNFWE 271
            +  W+
Sbjct: 288 TILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 7e-15
 Identities = 60/322 (18%), Positives = 109/322 (33%), Gaps = 26/322 (8%)

Query: 44  EGH----IYSLAASKDLLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVISGEKIFT 97
           +GH    I  L    + + +GSD   ++VW     K        +G V +  +    I +
Sbjct: 13  KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 98  GHQDGKIRVWKISPKNQSVHKRAGTLPTL------KDIFKSSIKPSNYIEVRRHRTALWI 151
           G  D  ++VW              T          K +   S   +  +        L +
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF 211
                 +   +  D   + + ++D   KVW      CL ++  H +     +      + 
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVV 191

Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D +++VW  E        +   TL   +   +   +    +I+  G++D  V  W+
Sbjct: 192 SGSLDTSIRVWDVET------GNCIHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWD 243

Query: 272 --REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR-RDGAIHTCLSVLT--G 326
               + L        H+ AV CL      V + S D T+ +W  + G     L  L   G
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 327 HTGPVKCLAVEEDRDSSSSTSS 348
             G V  +     +   +  S 
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSR 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 44/293 (15%), Positives = 101/293 (34%), Gaps = 20/293 (6%)

Query: 30  NLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSK--NIRVWKNLKEFCGFKASSGLVKA 87
           +      + +LV   G ++S     +++ +GS  +   +   +  +        +  V+ 
Sbjct: 43  SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102

Query: 88  IVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL------KDIFKSSIKPSNYIE 141
           + +  +++ +G +D  +RVW I                       + +   +      + 
Sbjct: 103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162

Query: 142 VRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS 201
                T L           SL  D   + + S D + +VW +    C+ +++ H    + 
Sbjct: 163 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 222

Query: 202 VVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261
            +   + ++ +G+AD TVK+W  +         L       +       +  +++ V   
Sbjct: 223 -MELKDNILVSGNADSTVKIWDIKTG-----QCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 262 SSDGLVNFWEREK----QLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTI 308
           S DG V  W+ +     +        G    V  + A+    +   GS + T 
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 4e-09
 Identities = 50/202 (24%), Positives = 70/202 (34%), Gaps = 15/202 (7%)

Query: 153 HSDAV-SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF 211
           H D V +C+    +   + + S D T KVW     KCL ++  H   V S          
Sbjct: 15  HDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----- 67

Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
               +  +              +            T   +      V  GS D  +  W+
Sbjct: 68  ----NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
            E       VL GH  AV C+   G+ V SG+ D  + VW  D    TCL  L GHT  V
Sbjct: 124 IETG-QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW--DPETETCLHTLQGHTNRV 180

Query: 332 KCLAVEEDRDSSSSTSSCAQRW 353
             L  +     S S  +  + W
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVW 202

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
           WR  + K  + +  HDD V + +      I +GS D T+KVW              +TL+
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV------TGKCLRTLV 54

Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300
                V +  +  +  I         V   E  + +       GH   V C+    K V 
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL---YGHTSTVRCMHLHEKRVV 111

Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC 333
           SGS D T+ VW  D     CL VL GH   V+C
Sbjct: 112 SGSRDATLRVW--DIETGQCLHVLMGHVAAVRC 142

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC-------LESVSAHDDAVNSV 202
                   +      D   +   S DR  +VW               ES + H D+V SV
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260

Query: 203 VSSSEG-LIFTGSADGTVKVW------KREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255
           V + +G  + +GS D +VK+W       +         +   T +  +  V ++  + + 
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--------GKLVFSGSADKT 307
             +  GS D  V FW+++   +   +L+GH+ +V+ +A A          +  +GS D  
Sbjct: 321 EYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 308 ICVWR 312
             +W+
Sbjct: 380 ARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 38/188 (20%)

Query: 57  LYTGSDSKNIRVWKNLKEFCG---------FKASSGLVKAIVIS--GEKIFTGHQDGKIR 105
           +  GS  + +RVW +   F                  V ++V +  G+ + +G  D  ++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165
           +W                    ++  ++ K  +           +I H D V  ++  Q+
Sbjct: 280 LW--------------------NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319

Query: 166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-------SSSEGLIFTGSADGT 218
              + + S DR    W       L  +  H ++V SV             +  TGS D  
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 219 VKVWKREQ 226
            ++WK ++
Sbjct: 380 ARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (154), Expect = 7e-12
 Identities = 68/346 (19%), Positives = 110/346 (31%), Gaps = 41/346 (11%)

Query: 39  SLVREEGH---IYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGE 93
            L +   H   +  +  S D   L TG + K  +V++        + S            
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 94  KIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152
              +    D  IR    SP  +                        +    R    +   
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGK-----------FLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
           H   +  +        L + S DRT ++W +   +C  ++S  D      VS  +G  I 
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 212 TGSADGTVKVWKREQHG-KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
            GS D  V+VW  E         S  ++    + +V ++V +     V  GS D  V  W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 271 EREK-----------QLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAI 317
             +              +      GHK  VL +A     + + SGS D+ +  W  D   
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW--DKKS 339

Query: 318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363
              L +L GH   V  +AV          +      +  +GS D  
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYN------VFATGSGDCK 379

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 25/141 (17%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK------------CLESVSAHDDAVN 200
           H D+V  +   +D   + + S DR+ K+W + ++             C  +   H D V 
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 201 SVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS--- 256
           SV ++     I +GS D  V  W ++        +    L     +V ++ V++  S   
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 257 ---IVYCGSSDGLVNFWEREK 274
              +   GS D     W+ +K
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197
             + V +        H   V  +          +   D     WR      +   S    
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESS 307

Query: 198 AVNSV-VSSSEGLIFTGSADGTVKVWK 223
           +V S  +S  +  I TGS D    V++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 34/319 (10%), Positives = 71/319 (22%), Gaps = 21/319 (6%)

Query: 11  SPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRV 68
           +   Q  P   P  +     +P++    + +     + ++  S     +YTG     ++V
Sbjct: 18  TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVKV 76

Query: 69  WKNLKEFCG-------FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119
           W                      +++  +   G  +  G +   + +W ++     +   
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136

Query: 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179
             +          S                     +                        
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196

Query: 180 VWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSAD-----GTVKVWKREQHGKGTKHS 234
                            +            IF+           V +             
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA 294
               L   E  V +L  +           D L+N W      S          +VL    
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDI 314

Query: 295 A--GKLVFSGSADKTICVW 311
           +   K + +GS DK   V+
Sbjct: 315 SVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 7/140 (5%)

Query: 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191
                    ++R  R       +  +  +        L         +V  ++     + 
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251
                  ++   +       +   D  +  W+       T +  +    K+  +V +  +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR-------TPYGASIFQSKESSSVLSCDI 314

Query: 252 SSSRSIVYCGSSDGLVNFWE 271
           S     +  GS D     +E
Sbjct: 315 SVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 33/93 (35%)

Query: 91  SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150
            G+   +  +D  +  W+  P   S+ +                                
Sbjct: 276 CGKWFVSTGKDNLLNAWRT-PYGASIFQ-------------------------------- 302

Query: 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183
            + S +V    +  D   + T S D+   V+ +
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 1/126 (0%)

Query: 99  HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158
               K     ISP    +         L    +S    ++    R  +            
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 159 CMSLDQDCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDAVNSVVSSSEGLIFTGSADG 217
               + +  L+ T S D    ++ +    K +++++AH D VN+++  +   + +  AD 
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADA 279

Query: 218 TVKVWK 223
            +K W 
Sbjct: 280 CIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 4e-09
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 17/281 (6%)

Query: 44  EGH---IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGH 99
            GH   I +L  +   L +GS    I  W +          S L+ ++  S  ++  +  
Sbjct: 10  SGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQDH---SNLIVSLDNSKAQEYSSIS 64

Query: 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159
            D  ++V  I+        +  +          +      I        +     ++   
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL-------IFT 212
                   +        T +V+++SD +    +     A  S +S S          +  
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272
                 ++  + +      + S    +  +     A        +V  GS D  +  +  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 273 EKQLSHGGVLKGHKLAVLCLA-AAGKLVFSGSADKTICVWR 312
           ++ +     L  HK  V  L       + S  AD  I  W 
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 7e-04
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 281 VLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
            + GH   +  L      + SGS D  I  W          S+   H+  +  L   + +
Sbjct: 8   TISGHNKGITALTVNP--LISGSYDGRIMEWSSS-------SMHQDHSNLIVSLDNSKAQ 58

Query: 341 DSSSSTSSCAQRWIVY 356
           + SS +     +    
Sbjct: 59  EYSSISWDDTLKVNGI 74

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197
               V    +   + HS +V  ++   D   + +AS D+T K+W ++  K  +++     
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281

Query: 198 AVNSV--VSSSEGLIFTGSADGTVKVWKRE 225
             +    +  ++  + + SA+G +     E
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 32/296 (10%), Positives = 62/296 (20%), Gaps = 24/296 (8%)

Query: 43  EEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFT 97
             G    L  +     + Y    S       +L +   +   S        S  G    +
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 98  GHQDGKIRVWKISPKNQSVHKRAG-----------------TLPTLKDIFKSSIKPSNYI 140
           G   G +R+W  +     +                           +   +         
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 141 EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN 200
                      R  ++V          +  +               K             
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 201 SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260
                      TG     V     +    G     +   +    +V  L  S   + +  
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 261 GSSDGLVNFWERE--KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314
            S+D  +  W     K      V    +   L +    + + S SA+  I     +
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSEG-L 209
             + +SC + ++D   +     +    ++  S +K   +  +  H+  V  V  + +   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 210 IFTGSADGTVKVWKREQH 227
           I T   D    VW  +  
Sbjct: 66  IVTCGTDRNAYVWTLKGR 83

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 44/360 (12%), Positives = 95/360 (26%), Gaps = 60/360 (16%)

Query: 47  IYSLAASKD--LLYTGSDSKNIRVW----KNLKEFCGFKASSGLVKAIVIS--GEKIFTG 98
           I   A +KD   +    ++  + ++        +    K  +G V  +  +    +I T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 99  HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTAL--------- 149
             D    VW +  +          +       + +     +      R            
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 150 -------WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK--------------- 187
                         V  +    +  LL   S D   +++     +               
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 188 ---CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
               +   S+    V+ V  S+ G  +   S D TV +   ++       +       + 
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA------SET 243

Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS 303
             + A+   +  S+V  G     V F         G +  G +L V   ++   L     
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTARER 300

Query: 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363
                     +G+      + + H   V  ++V     +  S           +  +D  
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ--------FCTTGMDGG 352

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGHKLAVLCLA--AAGKLVFS 301
            ++    +  R+ +    ++  V+ +E+   +      LK H   V  +        + +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 302 GSADKTICVWRRDGAIHTC 320
              D+   VW   G     
Sbjct: 69  CGTDRNAYVWTLKGRTWKP 87

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251
           S   + ++    + +   I     +  V ++++     G K      L +    VT +  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVHELKEHNGQVTGVDW 59

Query: 252 SSSRSIVYCGSSDGLVNFWE 271
           +   + +    +D     W 
Sbjct: 60  APDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 288 AVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
            + C A       +     +  + ++ + G     +  L  H G V  +    D
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 18/168 (10%), Positives = 46/168 (27%), Gaps = 14/168 (8%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL 209
                  V  +    +   +   S D T  +        + ++++    + +V   +E  
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256

Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
           +     D    ++  +             + KQ            +++    SS+G    
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 270 WEREKQLSHGGVLKGHKLAVLCLA------AAGKLVFSGSADKTICVW 311
                      +   HK +V  ++      A      +   D  + +W
Sbjct: 317 GAG--------LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 30/315 (9%), Positives = 74/315 (23%), Gaps = 44/315 (13%)

Query: 43  EEGH---IYSLAASKD--LLYTGSDSKNIRVW-----KNLKEFCGFKASSGLVKAIVIS- 91
           E+     I  +       LL   S   ++ V+         +          +       
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 92  --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTAL 149
               +I+ G   G+I    +                                       +
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASW-----------------DRTFKVWRISDSKCLESV 192
               +     +++                             +   + +R+   +     
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 193 SAHDDAVN-----SVVSSSEGLIFTGSADGTVKVW---------KREQHGKGTKHSLAQT 238
                        +++   +      S DG V V             +      H L   
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246

Query: 239 LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKL 298
                  V ++  S     +Y   SDG+++ W  + +       K ++ +V+ +A +  +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306

Query: 299 VFSGSADKTICVWRR 313
           +   ++D T      
Sbjct: 307 LCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 281 VLKGHKLAVLCLA--AAGKLVFSGSADKTICVWR-RDGAIHTCLSVLTGHTGPVKCLAVE 337
           + +  K  +  +    +  L+   S D ++ V++    A +  L     +  P+ C    
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 338 EDRDSSSSTSSCAQRWIVY 356
           ++ D      +     +  
Sbjct: 66  DNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 187 KCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245
           + ++   A  D ++ + +  S+ L+   S DG++ V+K +      K+      L+ +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRYKHP 58

Query: 246 VTALVVS-SSRSIVYCGSSDGLVNFW 270
           +       ++   +Y G+  G +   
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKV 84

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 153 HSDAV-SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF 211
           H  +V +C+  + +   + T + D+  +V+   + K L  +S HD  V ++  +  G++ 
Sbjct: 11  HMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
           +GS D TV+VW  ++                      +V   +   +  GS D  ++ W+
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHN----STVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 272 REKQ 275
             K+
Sbjct: 125 LPKE 128

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG 208
           +  H   +S ++       +  +  +  F ++ +   K + +      D + SV    + 
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 209 LIFTGSADGTVKVW 222
           L+     DG   + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 281 VLKGHKLAVL-CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
            L+GH  +V+ CL      V +G+ DK I V+  D      L  L+GH G V  L     
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVY--DSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 340 RDSSSSTSSCAQRWIVY 356
               S ++    R    
Sbjct: 65  GILVSGSTDRTVRVWDI 81

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 191 SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250
           ++  H  +V + +   +  + TG+ D  ++V+                L   +  V AL 
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSI------NKKFLLQLSGHDGGVWALK 60

Query: 251 VSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTI 308
            +    +V   +  +  + +  +        G     +   +      K + +GS D T+
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 309 CVW 311
            VW
Sbjct: 121 HVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFSG 302
             ++A+        +    S+   N +           +      +  +   GK LV + 
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 341

Query: 303 SADKTICVWRRD 314
             D    +   D
Sbjct: 342 EKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 53/357 (14%), Positives = 107/357 (29%), Gaps = 75/357 (21%)

Query: 44  EGH----IYSLAASKDLLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKAIVISGEKIF- 96
            GH    I  L    + + TG+D K IRV+   N K         G V A+  +   I  
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 97  --------------------------------------------TGHQDGKIRVWKISPK 112
                                                       TG +D  + VWK+   
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP-- 126

Query: 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172
                       ++ D  +    P  +     +   + +      S  ++     ++ + 
Sbjct: 127 ---------KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177

Query: 173 SWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGSADGTVKVWKREQHGKGT 231
           S+D T  VW ++  KCL  +S H D + +++         + S D T+++W  E      
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237

Query: 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC 291
                  L+             S   +   ++DG +  W+             +  A+  
Sbjct: 238 TLQGHTALVGLLR--------LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 292 LAAAGKLVFSGSADKTICVWR-RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347
              +  ++ SGS +    ++  R G      + +      +  +  +     ++   
Sbjct: 290 FYVSDNILVSGS-ENQFNIYNLRSG--KLVHANILKDADQIWSVNFKGKTLVAAVEK 343

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 9/121 (7%), Positives = 30/121 (24%), Gaps = 6/121 (4%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL 209
                   + + L +       ++          ++    +    H +            
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN 295

Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
           I    ++    ++        +   +   +LK    + + V    +++V     DG    
Sbjct: 296 ILVSGSENQFNIYNLR-----SGKLVHANILKDADQIWS-VNFKGKTLVAAVEKDGQSFL 349

Query: 270 W 270
            
Sbjct: 350 E 350

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 5e-08
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN----SVVSS 205
                          D     T   D T +VW ++ SKC++  +     +      VV++
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 206 SEGLIFTGSADGTVKVWK 223
             G I + S DGT+  ++
Sbjct: 307 GNGRIISLSLDGTLNFYE 324

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 96  FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155
                     +   +          G      D  +  I  S         T  W  H+ 
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225

Query: 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV---SAHDDAVNSVVSSSEGLIFT 212
            V+C+S   D   L T S D +  VW ++       +   +    +VNSV+  +E  I +
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285

Query: 213 GSADGTVKVW 222
              D  +K W
Sbjct: 286 AGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEGLIF 211
           H+ A++ +S   D   L++A  +     W IS           H   +  + ++S+G +F
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 212 TGSADGTVKVWKREQHGKGTKH 233
           T S D  +KV      G  +  
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSK 92

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 36/296 (12%), Positives = 80/296 (27%), Gaps = 20/296 (6%)

Query: 37  IGSLVRE-EGH---IYSLAASKD--LLYTGSDSKNIRVW---KNLKEFCGFKASSGLVKA 87
           +GS+ +   GH   I +L++S D   L++     +I  W     +         + ++  
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 88  IVISGEK-IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHR 146
           I  + +  +FT   D  ++V           K      + + +  +     +      ++
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 147 TALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS 206
                 H              +  +          + S     +   A    V ++V  +
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 207 EGLIFTG-------SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259
           E              A    +           + +   +       V  +  S     + 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 260 CGSSDGLVNFWE-REKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
            GS D  V  W   +       +   H ++ +          + S   D  I  W 
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 18/182 (9%), Positives = 42/182 (23%), Gaps = 12/182 (6%)

Query: 139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-------DSKCLES 191
             ++   +       +      + D D   LY  S+                        
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT-KHSLAQTLLKQECAVTAL 249
           +     + N             G  D      +          + +   L       +  
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTIC 309
           V     +        G++  ++ + +      +K +   +  L+A  K V     D  I 
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDL-RLSADRKTVMVRKDDGKIY 339

Query: 310 VW 311
            +
Sbjct: 340 TF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 16/169 (9%), Positives = 37/169 (21%), Gaps = 19/169 (11%)

Query: 55  DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQ 114
             LY  S          +     F+  S            +             +     
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKP---------FVIPLIPGSPNPTKLVPRSMT 241

Query: 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW 174
           S           K     ++ P +Y  +    +          S     +       A  
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES-----SILIYSVPVHGEFAAYYQGAPE 296

Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVW 222
                 + +   K    V+   + +  +  S++   +     DG +  +
Sbjct: 297 KGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 20/227 (8%), Positives = 49/227 (21%), Gaps = 16/227 (7%)

Query: 1   MSCEGSPMTMSPWNQTGPFSNPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLY 58
           ++ +G  +    ++                   +      +            +D  L  
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 59  TGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK 118
               ++      + + F           A      ++      GKI    +S  +     
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD----- 227

Query: 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178
                       ++  +       R         H        L          +  R  
Sbjct: 228 -----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282

Query: 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVW 222
            V      + L         ++S+  S +    L    + D T+ + 
Sbjct: 283 VVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 27/331 (8%), Positives = 74/331 (22%), Gaps = 52/331 (15%)

Query: 54  KDLLYTGSDSKNIRVW-----KNLKEFCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIR 105
           +D +   +    + V         K      A        +++  G   + T ++   + 
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLV 59

Query: 106 VW--------------------------KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY 139
                                        +SP  +++      +      F+        
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV 199
            +               ++ ++  +D   LY    D              + + + +   
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 200 NSVVSSSEGLI-----FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS 254
            +                 +          +        +   T+  +   +    V   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 255 RSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304
               +  +             ++  ++ EK  S   V   H    + ++  G  V+ G A
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA 299

Query: 305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLA 335
              +  +  D         +         LA
Sbjct: 300 LGDLAAY--DAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 16/181 (8%), Positives = 45/181 (24%), Gaps = 12/181 (6%)

Query: 45  GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDG 102
             I  LA ++D   LY      ++   +           S   +              + 
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194

Query: 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162
              +       +     A        +    ++             ++   +      + 
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT- 253

Query: 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKV 221
                           + + +  +  ++ V     +  SV  S++G  ++ G A G +  
Sbjct: 254 -------RAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305

Query: 222 W 222
           +
Sbjct: 306 Y 306

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 28/342 (8%), Positives = 71/342 (20%), Gaps = 67/342 (19%)

Query: 49  SLAASKDLLYTGSDSKNIRVW--KNLKEFCGFKASSGL-VKAIVIS--GEKIF-TGHQDG 102
           +L A  + +   +   N+ V    +   +              +++      +   +  G
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 103 KIRVW---------------------------KISPKNQSVHKRAGTLPTLKDIFKSSIK 135
            I                               ISP  + V+        L D +     
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195
                       A  +R       + L +                  +   K   ++   
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182

Query: 196 DD--------------------------AVNSVVSSSEGLIFTGSADGTVKVWKREQHGK 229
           +                              +     +    T                K
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV----DLK 238

Query: 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV 289
             K    +     E   T L      + +Y   +   +  ++ +++         H    
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR--LAKYDLKQRKLIKAANLDHTYYC 296

Query: 290 LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
           +     G  ++ G     + V+  +      +  +    G +
Sbjct: 297 VAFDKKGDKLYLGGTFNDLAVF--NPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 15/212 (7%), Positives = 43/212 (20%), Gaps = 3/212 (1%)

Query: 160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG--LIFTGSAD 216
            +L      +   ++     V  ++     +S          + + + +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL 276
           G +     +        +L+    +   ++ +  +S     VY   +           + 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 277 SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV 336
               V                +       +         A      +          L +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 337 EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368
                   S       W   S   + S     
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.62
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.83
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.65
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.92
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.57
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.19
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.85
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.65
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.6
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.88
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.68
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.38
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.81
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.36
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.03
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.76
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.24
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.54
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.45
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.4

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-44  Score=300.38  Aligned_cols=283  Identities=17%  Similarity=0.302  Sum_probs=234.3

Q ss_pred             cccCCC-ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe--CCEEE
Q 047325           29 ENLPQN-GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS--GEKIF   96 (368)
Q Consensus        29 ~~~~~~-~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~--~~~l~   96 (368)
                      +.+|.. +.+.++ .|.+.|.|++|+++  +|+||+ ||.|+|||+...       ......|.+.|.+++|+  +++|+
T Consensus        36 ~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~  113 (337)
T d1gxra_          36 PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             TTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred             CCCCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEE
Confidence            444443 445555 89999999999865  999987 899999997632       22345799999999998  78999


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR  176 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  176 (368)
                      +|+.||.|++||+.......                              ...+.+|...+.++.|+|++.++++++.|+
T Consensus       114 s~~~dg~i~iwd~~~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  163 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             EEESSSEEEEEECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             Eeeccccccccccccccccc------------------------------cccccccccccccccccccccccccccccc
Confidence            99999999999987654211                              112334888999999999999999999999


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR  255 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (368)
                      .|++||+.++++......|...+.+++|++++ .+++++.|+.+++||++...      .. ....+...|.+++|+|++
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~------~~-~~~~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------QL-QQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EE-EEEECSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccce------ee-cccccccceEEEEEcccc
Confidence            99999999999999999999999999999998 99999999999999998652      22 234577899999999999


Q ss_pred             CEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE
Q 047325          256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC  333 (368)
Q Consensus       256 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~  333 (368)
                      ++|++++.|+.+++||+++....  ....|...+.  +++|++++|++|+.||.|++||+...  +.+..+ .|..+|++
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~--~~~~~~-~~~~~v~~  311 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQS-KESSSVLS  311 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEE-ECSSCEEE
T ss_pred             cccceeccccccccccccccccc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEc-cCCCCEEE
Confidence            99999999999999999977654  3455666664  45578999999999999999998876  455554 48899999


Q ss_pred             EEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ++|+|+++            .|++|+.||+|++|
T Consensus       312 ~~~s~d~~------------~l~t~s~D~~I~vW  333 (337)
T d1gxra_         312 CDISVDDK------------YIVTGSGDKKATVY  333 (337)
T ss_dssp             EEECTTSC------------EEEEEETTSCEEEE
T ss_pred             EEEeCCCC------------EEEEEeCCCeEEEE
Confidence            99999999            68888999999988

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-44  Score=295.87  Aligned_cols=280  Identities=22%  Similarity=0.354  Sum_probs=244.5

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~  108 (368)
                      +...+|.||.++|++|+|+++  +|+||+.||+|+|||+.+  .+..+.+|...|.+++++  +.++++++.++.+.+|+
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            345679999999999999855  999999999999999874  466788999999999998  78999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      ....+.....                                .+|...+.++.++|+++.+++++.|+.+++||+++++.
T Consensus        88 ~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  135 (317)
T d1vyhc1          88 FQGFECIRTM--------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC  135 (317)
T ss_dssp             TTSSCEEECC--------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccccccc--------------------------------ccccccceeeeccCCCceEEeeccCcceeEeeccccee
Confidence            8766533222                                23888999999999999999999999999999999999


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC------------
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR------------  255 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  255 (368)
                      +..+..|...+.++++++++ +|++++.|+.|++|+++...      ....+..+...+.++.++|++            
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce------eeEEEecCCCCceEEEEeeccccceeeccccce
Confidence            99999999999999999999 99999999999999998752      456667788889999888753            


Q ss_pred             --------CEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          256 --------SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       256 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                              .++++++.|+.|++||++++... ..+.+|...+.  +++|++++|++|+.||.|++||+.+.  +++..+.
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~  286 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLN  286 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEEEE
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCCCcEE-EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC--cEEEEEc
Confidence                    57899999999999999987655 56667877775  45568999999999999999998876  7788999


Q ss_pred             ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +|.++|++++|+|+++            .|+||+.||+|++|
T Consensus       287 ~h~~~V~~~~~s~~~~------------~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         287 AHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVW  316 (317)
T ss_dssp             CCSSCEEEEEECSSSS------------CEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEEcCCCC------------EEEEEeCCCeEEEe
Confidence            9999999999999999            78899999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-41  Score=289.33  Aligned_cols=281  Identities=24%  Similarity=0.365  Sum_probs=220.2

Q ss_pred             ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce--e------------------cccCCCCCeeEEEEe--CCEE
Q 047325           40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF--C------------------GFKASSGLVKAIVIS--GEKI   95 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~--~------------------~~~~~~~~v~~~~~~--~~~l   95 (368)
                      ..+|++.|+|++|+++  +||+|+ |++|+|||+.+..  .                  ....|...|.+++|+  +++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            3479999999999865  999987 8999999976321  1                  123577889999998  7899


Q ss_pred             EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325           96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD  175 (368)
Q Consensus        96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  175 (368)
                      ++|+.||.|++||...++...                                .+.+|...|.++.+++++..+++++.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVM--------------------------------ILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEE--------------------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeccccccccccccccccccc--------------------------------ccccccccccccccccccccccccccc
Confidence            999999999999988765322                                233489999999999999999999999


Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc-ccceeeccccccEEEEEEcC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH-SLAQTLLKQECAVTALVVSS  253 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~  253 (368)
                      +.+++||..+.........+...+....+.+++ +|++++.|+.|++||.+........ ........|...|.+++|+|
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            999999999998888877666655555555566 8999999999999999876431111 11223346788999999999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCcccc-----------ceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325          254 SRSIVYCGSSDGLVNFWEREKQLSH-----------GGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       254 ~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      ++++|++++.||.|++||+++....           ......|...+.  ++++++++|++|+.||.|++||+.++  ++
T Consensus       265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~  342 (388)
T d1erja_         265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NP  342 (388)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--CE
T ss_pred             CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC--cE
Confidence            9999999999999999998754322           123344555564  45568999999999999999999876  77


Q ss_pred             eEeeeccccCeeEEEE------ecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          321 LSVLTGHTGPVKCLAV------EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       321 ~~~~~~h~~~v~~l~~------~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +.++.+|.++|+++++      +|++.            .|+||+.||+||+|
T Consensus       343 ~~~l~~H~~~V~~~~~~~~~~~spd~~------------~l~s~s~Dg~I~iW  383 (388)
T d1erja_         343 LLMLQGHRNSVISVAVANGSSLGPEYN------------VFATGSGDCKARIW  383 (388)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCE------------EEEEEETTSEEEEE
T ss_pred             EEEEeCCCCCEEEEEEecCcccCCCCC------------EEEEEeCCCEEEEE
Confidence            8899999999999985      56777            78899999999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-40  Score=277.39  Aligned_cols=286  Identities=20%  Similarity=0.316  Sum_probs=237.5

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw  107 (368)
                      .+..++|.||.++|++++|+++  +||||+.||+|+|||+.+  .+..+..|...|.+++|+  +.++++|+.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            3566789999999999999865  999999999999999874  355678999999999998  7899999999999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      +..........                            ...+.+|........... +..+.....+.....++.....
T Consensus       125 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  175 (340)
T d1tbga_         125 NLKTREGNVRV----------------------------SRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             ESSSSCSCCCE----------------------------EEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTE
T ss_pred             ccccccccccc----------------------------ceeccccccccccccccc-cccccccccccccccccccccc
Confidence            98765432211                            112233555555555444 4577888889999999999888


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .......+...+....+.+.+ .+++++.|+.|++||++..      .+...+..|...|++++|+|++++|++|+.||.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~------~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCC------cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            888888888899999999888 8999999999999999865      356677889999999999999999999999999


Q ss_pred             EEEEeCCCcccccee-eeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          267 VNFWEREKQLSHGGV-LKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       267 i~i~d~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      |++||++........ ...+...+  +++++++++|++|+.||.|++||+.+.  +++..+.+|.++|++++|+|++.  
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~H~~~V~~l~~s~d~~--  325 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGM--  325 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSS--
T ss_pred             EEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEeCCCC--
Confidence            999999876554322 22333334  566778999999999999999998876  77889999999999999999999  


Q ss_pred             ecCCcceEEEEEeeCCcccccccCC
Q 047325          344 SSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       344 ~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                                .|+||+.||+|++|+
T Consensus       326 ----------~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 ----------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ----------CEEEEETTSCEEEEC
T ss_pred             ----------EEEEEccCCEEEEeC
Confidence                      789999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-40  Score=274.05  Aligned_cols=272  Identities=17%  Similarity=0.169  Sum_probs=218.1

Q ss_pred             CCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           44 EGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        44 ~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      .+.+..++++  ++.|+.++ ++.|.+||+..  ....+.+|...|++++|+  +++|++|+.||+|++||+.+......
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            3444455655  55777765 56799999874  455678999999999998  88999999999999999987754321


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~  195 (368)
                                                    ..+.+|...|.+++|+|++++|++++.  +..+++|++.+++....+.+|
T Consensus        96 ------------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h  145 (311)
T d1nr0a1          96 ------------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ  145 (311)
T ss_dssp             ------------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC
T ss_pred             ------------------------------cccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence                                          123348999999999999999999986  456999999999999999999


Q ss_pred             CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325          196 DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE  273 (368)
Q Consensus       196 ~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  273 (368)
                      ...|.+++|+|++  .+++|+.|+.|++||++..      ........|...|+++.++|++++|++++.|+.|++||.+
T Consensus       146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~------~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~  219 (311)
T d1nr0a1         146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  219 (311)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccceeeeccccccccccccccccc------ccccccccccccccccccCccccccccccccccccccccc
Confidence            9999999999988  5888999999999999865      3566677889999999999999999999999999999998


Q ss_pred             Cccccc------eeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc---CeeEEEEecCCee
Q 047325          274 KQLSHG------GVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG---PVKCLAVEEDRDS  342 (368)
Q Consensus       274 ~~~~~~------~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~  342 (368)
                      ++....      ....+|...|.+  ++|++++|++|+.||.|+|||+++.  +++.++..|..   .+.++.|+  +. 
T Consensus       220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~--~~~~~l~~~~~~~~~~~~~~~~--~~-  294 (311)
T d1nr0a1         220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL--KVEKTIPVGTRIEDQQLGIIWT--KQ-  294 (311)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSGGGCEEEEEEC--SS-
T ss_pred             cccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCccceEEEEEec--CC-
Confidence            654332      123356666655  4568999999999999999999876  67777776643   34455554  44 


Q ss_pred             eecCCcceEEEEEeeCCcccccccCC
Q 047325          343 SSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       343 ~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                                 .+++++.||.|++|.
T Consensus       295 -----------~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         295 -----------ALVSISANGFINFVN  309 (311)
T ss_dssp             -----------CEEEEETTCCEEEEE
T ss_pred             -----------EEEEEECCCEEEEEe
Confidence                       467888899998883

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-39  Score=267.51  Aligned_cols=308  Identities=18%  Similarity=0.300  Sum_probs=227.1

Q ss_pred             CCCceeeeccCcCCcE-EEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEe
Q 047325           32 PQNGLIGSLVREEGHI-YSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        32 ~~~~~~~~~~~h~~~i-~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~  108 (368)
                      .+.+..+.|+||++.| .|++++|++||||+.||+|+|||+.+  .+..+.+|...|.+++|++++|++|+.|+.+++|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             SCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            3445667899999997 57899999999999999999999864  46678999999999999999999999999999999


Q ss_pred             ecCCCccccccCCccccceeee------eccCCCC-ceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIF------KSSIKPS-NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW  181 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  181 (368)
                      ......................      ....... .............. ...........+....+++++.|+.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeee-ecccccceeeccccceeeeecCCCeEEEe
Confidence            8876544333222211110000      0000000 00111111111111 11112223344456788999999999999


Q ss_pred             EccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          182 RISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       182 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      |+...+.+..+.+|...+..+.+.+ ..+++++.||.|++||++..      ........|...+.++.+++  ++|+++
T Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~--~~l~s~  233 (342)
T d2ovrb2         163 DPETETCLHTLQGHTNRVYSLQFDG-IHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD--NILVSG  233 (342)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEECS-SEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET--TEEEEE
T ss_pred             ecccceeeEEEcCcccccccccCCC-CEEEEEeCCCeEEEeecccc------eeeeEecccccceeEEecCC--CEEEEE
Confidence            9999999999999988777766632 28999999999999999865      34667778888898887764  699999


Q ss_pred             cCCCcEEEEeCCCcccccee--eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-----eccccCeeEE
Q 047325          262 SSDGLVNFWEREKQLSHGGV--LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-----TGHTGPVKCL  334 (368)
Q Consensus       262 ~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~l  334 (368)
                      +.||.|++||+...+.....  ...|...+.+++++++++++|+.||.|++||++++  +.++.+     .+|...|+++
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg--~~i~~~~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRI  311 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEE
T ss_pred             cCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC--CEEEEEecccCCCCCCCEEEE
Confidence            99999999999876544222  23467788999999999999999999999999876  455544     3577889999


Q ss_pred             EEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325          335 AVEEDRDSSSSTSSCAQRWIVYSGSLDKS  363 (368)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~w~l~sg~~D~~  363 (368)
                      +|+|++.            .+++|+.||+
T Consensus       312 ~~s~~~~------------~la~g~~dGt  328 (342)
T d2ovrb2         312 RASNTKL------------VCAVGSRNGT  328 (342)
T ss_dssp             EECSSEE------------EEEEECSSSS
T ss_pred             EECCCCC------------EEEEEeCCCC
Confidence            9999998            6777777775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-39  Score=272.86  Aligned_cols=305  Identities=19%  Similarity=0.270  Sum_probs=226.6

Q ss_pred             eeeccCcCCc-EEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCC
Q 047325           37 IGSLVREEGH-IYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        37 ~~~~~~h~~~-i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      ..+|+||.+. |+|++|++++||||+.||+|+|||+.+  .+..+.+|.++|.+++|+ +++|++|+.||+|++|++...
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence            4568999888 479999999999999999999999874  466789999999999998 789999999999999999887


Q ss_pred             CccccccCCcccccee----------eeeccCCCC-ceeEeccc------------------------ceeeeeecCCCE
Q 047325          113 NQSVHKRAGTLPTLKD----------IFKSSIKPS-NYIEVRRH------------------------RTALWIRHSDAV  157 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~~~v  157 (368)
                      ................          +........ ....+...                        .......|...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  164 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  164 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE
T ss_pred             ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc
Confidence            6543333222111110          111010000 00000000                        001112233344


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325          158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      ..  +.+++++++++..|+.|++||+.+++.+....++...+.++.+++++ .+++++.|+.|++||++..      ...
T Consensus       165 ~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~~  236 (355)
T d1nexb2         165 RT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELM  236 (355)
T ss_dssp             EE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC------CEE
T ss_pred             cc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc------ccc
Confidence            33  44567899999999999999999999999999999999999999998 9999999999999999876      356


Q ss_pred             eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325          237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  316 (368)
                      ..+.+|...|.+++++  +++|++++.||.|++||+++..........+...+..+++++.+|++|+ ||.|++||++++
T Consensus       237 ~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         237 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             EEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             cccccccccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence            6778899999999986  4799999999999999998765443322233334466777888877765 899999999876


Q ss_pred             ceeeeE-eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          317 IHTCLS-VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       317 ~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                        +++. .+.+|.++|++++|+|+.             ++++++.||+++||
T Consensus       314 --~~~~~~~~~~~~~V~~v~~~~~~-------------~~~~~s~dg~~~l~  350 (355)
T d1nexb2         314 --KLVHANILKDADQIWSVNFKGKT-------------LVAAVEKDGQSFLE  350 (355)
T ss_dssp             --CBCCSCTTTTCSEEEEEEEETTE-------------EEEEEESSSCEEEE
T ss_pred             --CEEEEEecCCCCCEEEEEEcCCe-------------EEEEEECCCcEEEE
Confidence              4443 467899999999999874             46667777776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-39  Score=266.84  Aligned_cols=254  Identities=15%  Similarity=0.135  Sum_probs=210.7

Q ss_pred             ccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEe
Q 047325           28 EENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        28 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      ..++........+.+|.+.|++++|+++  +||+|+.||+|++||+...    ...+..|..+|.+++|+  +.+|++++
T Consensus        42 i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          42 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             EEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccc
Confidence            3456677778888999999999999765  9999999999999998753    23467899999999999  67888887


Q ss_pred             C--CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE-EEEEeCCC
Q 047325          100 Q--DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL-LYTASWDR  176 (368)
Q Consensus       100 ~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~  176 (368)
                      .  +..+++|++++++.....                                .+|.+.|++++|+|++++ |++|+.|+
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~l--------------------------------~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNGNL--------------------------------TGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCBCC--------------------------------CCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccccccccccccccc--------------------------------cccccccccccccccceeeeccccccc
Confidence            5  456999999877643322                                238899999999998875 88899999


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~  254 (368)
                      .|++||+++++....+..|...|.++.++|++ ++++++.|+.|++||.+......... ......+|...|.+++|+|+
T Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            99999999999999999999999999999999 99999999999999998764321111 11234468889999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCccccceeeecc---ceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGH---KLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      +++|++|+.||.|++||+++++... .+..|   ...+.++.++++.|++++.||.|++||.+
T Consensus       250 ~~~l~tgs~Dg~v~iwd~~t~~~~~-~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         250 GTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE-EEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999876653 33333   34567888999999999999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-39  Score=266.91  Aligned_cols=282  Identities=15%  Similarity=0.180  Sum_probs=217.1

Q ss_pred             CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecc-cCCCCCeeEEEEe-CCEEEEEeCCCeEEEE
Q 047325           34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGF-KASSGLVKAIVIS-GEKIFTGHQDGKIRVW  107 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw  107 (368)
                      +.+.+.+.||.++|++++|+++  +|+||+.||+|++||+.+.  ...+ ..|...|.+++|+ ...+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            4577899999999999999865  9999999999999998743  3344 4789999999998 4467888899999999


Q ss_pred             eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325          108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK  187 (368)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  187 (368)
                      +...........                             ....+...+.+++++|++..+++++ ++.+.+|+..  +
T Consensus        82 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~  129 (299)
T d1nr0a2          82 PAGGSGVDSSKA-----------------------------VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--K  129 (299)
T ss_dssp             CSSSSSSCTTSC-----------------------------CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--E
T ss_pred             ccCCcccccccc-----------------------------ccccccccccccccccccccccccc-cccccccccc--c
Confidence            987543221111                             1223778899999999998777665 5789999854  3


Q ss_pred             EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      .....  ....+.+++++|++ .+++|+.|+.|++||++....     .......|...|.+++|+|++++|++++.|+.
T Consensus       130 ~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         130 LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccc--cccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc
Confidence            33322  34567889999999 899999999999999975421     12234567889999999999999999999999


Q ss_pred             EEEEeCCCccccc--eeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-cCeeEEEEecCCe
Q 047325          267 VNFWEREKQLSHG--GVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-GPVKCLAVEEDRD  341 (368)
Q Consensus       267 i~i~d~~~~~~~~--~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~  341 (368)
                      |++||+.++....  .....|...+.+  ++|++++|++|+.||.|++||++............|. ..|.++.|.+ +.
T Consensus       203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  281 (299)
T d1nr0a2         203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET  281 (299)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TT
T ss_pred             cccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CC
Confidence            9999988654332  345567777755  4568999999999999999999876555444444444 5677776654 45


Q ss_pred             eeecCCcceEEEEEeeCCcccccccC
Q 047325          342 SSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       342 ~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                  .|++|+.|++||+|
T Consensus       282 ------------~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         282 ------------TIVSAGQDSNIKFW  295 (299)
T ss_dssp             ------------EEEEEETTSCEEEE
T ss_pred             ------------EEEEEeCCCEEEEE
Confidence                        57889999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-39  Score=274.70  Aligned_cols=284  Identities=15%  Similarity=0.141  Sum_probs=218.4

Q ss_pred             CCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcc
Q 047325           44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      .++|+|++|+++  +||+|+.||.|+|||...    ....+++|.++|.+++|+  +++|++|+.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            478999999865  999999999999999853    345678999999999998  889999999999999999866432


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE----EEE
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC----LES  191 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~  191 (368)
                      ...                              .+.+|...|++++|+|+++.|++++.|+.|++|++.....    ...
T Consensus        87 ~~~------------------------------~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          87 PTL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ccc------------------------------ccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence            111                              1234888999999999999999999999999999876543    333


Q ss_pred             eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc------------ccccceeeccccccEEEEEEcCCCCEE
Q 047325          192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT------------KHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ...|...|.+++|+|++ +|++|+.|+.|++||........            ..........|...|.+++|+|++++|
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  216 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  216 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence            45688899999999999 99999999999999986543211            112334456788899999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE--------------
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS--------------  322 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------  322 (368)
                      ++++.|+.|++||++++... ..+..|..++  +++++++++|++|+ |+.+++|..+........              
T Consensus       217 ~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (371)
T d1k8kc_         217 AWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG  294 (371)
T ss_dssp             EEEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred             cccccCCcceEEeeecccce-eeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccc
Confidence            99999999999999887655 4566677666  55667888887655 777777765432111100              


Q ss_pred             -------------------------eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          323 -------------------------VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       323 -------------------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                                               ....|.+.|+++++.+.+...      .  -.++|+|.||.||+|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~------~--~~~~T~g~Dg~v~iW  356 (371)
T d1k8kc_         295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK------C--SQFCTTGMDGGMSIW  356 (371)
T ss_dssp             -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTS------C--SEEEEEETTSEEEEE
T ss_pred             ccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcc------e--EEEEEEcCCCeEEEE
Confidence                                     001388889999998765310      0  047899999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-39  Score=262.02  Aligned_cols=268  Identities=15%  Similarity=0.162  Sum_probs=215.5

Q ss_pred             CceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCC
Q 047325           34 NGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPK  112 (368)
Q Consensus        34 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~  112 (368)
                      .+++++|.||.++|++++|++  |+||+.||+|++||+.+.   ...|...|.++.+. +..+++++.|+++++|++...
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~---~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM---HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE---ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC---CCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            467899999999999999987  999999999999998764   36899999999998 778999999999999998653


Q ss_pred             CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325          113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV  192 (368)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (368)
                      +                                       ....+.++.+.+++..++++ .++.+.+|+..+++.+..+
T Consensus        78 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          78 E---------------------------------------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             E---------------------------------------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred             c---------------------------------------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeec
Confidence            2                                       34456778888887666655 5677999999999988887


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW  270 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  270 (368)
                      ..+ ..+.++.  +++ .+++++.+ +.+++|++....     ........+...+++++|+|++++|++|+.||.|++|
T Consensus       118 ~~~-~~~~~~~--~~~~~~~v~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         118 RLN-SPGSAVS--LSQNYVAVGLEEGNTIQVFKLSDLE-----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             ECS-SCEEEEE--ECSSEEEEEETTTSCEEEEETTEEE-----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccc-ceeeeee--ccCcceeeeccccceeeeeeccccc-----eeeeeeeccCCceeEEEeccCccccccccccccccce
Confidence            644 4444444  444 55555554 579999986432     1222334567889999999999999999999999999


Q ss_pred             eCCCccccceeeeccceEEEEEEe------------CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          271 EREKQLSHGGVLKGHKLAVLCLAA------------AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       271 d~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      |+.++.........|...+.++++            ++.+|++|+.|++|++||++.. .+.+..+.+|.+.|++++|+|
T Consensus       190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-~~~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEE
T ss_pred             eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-CeEEEEeCCCCCCeEEEEECC
Confidence            999877665666788888877653            4678999999999999998764 256677789999999999999


Q ss_pred             CCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325          339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDVH  368 (368)
Q Consensus       339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h  368 (368)
                      ++.             ++|++.|++||+|.
T Consensus       269 ~~~-------------l~s~g~D~~v~iW~  285 (287)
T d1pgua2         269 PST-------------LVSSGADACIKRWN  285 (287)
T ss_dssp             TTE-------------EEEEETTSCEEEEE
T ss_pred             CCE-------------EEEEECCCeEEEEE
Confidence            875             67888899999983

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-38  Score=269.37  Aligned_cols=306  Identities=16%  Similarity=0.178  Sum_probs=220.8

Q ss_pred             eeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEe---------CCEEEEEeC
Q 047325           38 GSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVIS---------GEKIFTGHQ  100 (368)
Q Consensus        38 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~---------~~~l~s~~~  100 (368)
                      ...++|.+.|+++++++++++|||.|++|+|||....        ......|...+..+...         ...+++++.
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            4568999999999999999999999999999996422        12223444444333321         246789999


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----CCEEEEEeCC
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----CGLLYTASWD  175 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d  175 (368)
                      ||.|++|++...............                      ......+...+..+++.++     +.++++++.|
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLD----------------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEEC----------------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             CCcEEEEEccCCCceeeeeccccc----------------------eeeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            999999998766532221110000                      0000115566777788764     4688999999


Q ss_pred             CcEEEEEccCCe------------------EEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325          176 RTFKVWRISDSK------------------CLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ  237 (368)
Q Consensus       176 ~~i~iwd~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  237 (368)
                      |.+++||+....                  .......+...+.+++|+|+++|++|+.|+.|++||++............
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccc
Confidence            999999985321                  11112234566899999999999999999999999998764433333444


Q ss_pred             eeccccccEEEEEEcCCCCEEEEecCCCc---EEEEeCCCccccce------------eeeccceEEEE--EEeCCCEEE
Q 047325          238 TLLKQECAVTALVVSSSRSIVYCGSSDGL---VNFWEREKQLSHGG------------VLKGHKLAVLC--LAAAGKLVF  300 (368)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~l~  300 (368)
                      .+.+|..+|.+++|+|++++|++|+.|+.   |++||++++.....            ...+|...|.+  |+|++++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence            56678999999999999999999998874   89999987654322            23478877755  556899999


Q ss_pred             EeeCCCeEEEEecCCCceeeeEeeeccccCee----EEEEecCCeeeecCCcceEEE---------------EEeeCCcc
Q 047325          301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVK----CLAVEEDRDSSSSTSSCAQRW---------------IVYSGSLD  361 (368)
Q Consensus       301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~----~l~~~~~~~~~~~~~~~~~~w---------------~l~sg~~D  361 (368)
                      +|+.|++|++||++++  +++.++.+|.+.|.    .++|+|++..+++++.....|               .+++.+.|
T Consensus       306 S~s~D~~v~vWd~~~g--~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  383 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD  383 (393)
T ss_dssp             EEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             EECCCCEEEEEECCCC--CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcC
Confidence            9999999999999887  78899999998876    588999998877654322211               26778889


Q ss_pred             cccccC
Q 047325          362 KSDDDV  367 (368)
Q Consensus       362 ~~v~i~  367 (368)
                      +.||+|
T Consensus       384 ~~ir~~  389 (393)
T d1sq9a_         384 RSIRWF  389 (393)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            999886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=252.70  Aligned_cols=273  Identities=26%  Similarity=0.381  Sum_probs=222.3

Q ss_pred             eeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCc
Q 047325           37 IGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQ  114 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  114 (368)
                      +.....|...|+|++|++++||||+.||+|+|||+.+  .+..+.+|.+.|.+++|++++|++|+.||.|++|++..+..
T Consensus         8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~   87 (293)
T d1p22a2           8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM   87 (293)
T ss_dssp             EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred             EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccc
Confidence            4456788899999999999999999999999999874  46678999999999999999999999999999999987764


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEE
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLES  191 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~  191 (368)
                      ......                                  .......+.+....++++..++.+.+||..+..   ....
T Consensus        88 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (293)
T d1p22a2          88 LNTLIH----------------------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV  133 (293)
T ss_dssp             EEEECC----------------------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred             cccccc----------------------------------cccccccccccccceeecccccceeEeecccccccccccc
Confidence            332221                                  112233455566789999999999999998654   3455


Q ss_pred             eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      +..|...+.++.+.+. .+++++.|+.|++||.+..      .....+.++...+..+.++  +..+++++.||.|++||
T Consensus       134 ~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d  204 (293)
T d1p22a2         134 LVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD  204 (293)
T ss_dssp             ECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             ccccccccccceeccc-ccccccCCCceeeecCCCC------cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEe
Confidence            5678888888877654 6778889999999999865      2456667778888887775  56899999999999999


Q ss_pred             CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC-------ceeeeEeeeccccCeeEEEEecCCeeee
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA-------IHTCLSVLTGHTGPVKCLAVEEDRDSSS  344 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~  344 (368)
                      +++.... ....++...+..+++++.+|++|+.||.|++||+...       ....+..+.+|.++|++++|++  .   
T Consensus       205 ~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~---  278 (293)
T d1p22a2         205 IECGACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--F---  278 (293)
T ss_dssp             TTTCCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--S---
T ss_pred             cccceee-eeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--C---
Confidence            9986655 5667788888899999999999999999999997431       2246778899999999999954  4   


Q ss_pred             cCCcceEEEEEeeCCcccccccC
Q 047325          345 STSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       345 ~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                               .|+|||.||+||+|
T Consensus       279 ---------~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         279 ---------QIVSSSHDDTILIW  292 (293)
T ss_dssp             ---------CEEECCSSSEEEEE
T ss_pred             ---------EEEEEecCCEEEEe
Confidence                     58899999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-37  Score=254.86  Aligned_cols=235  Identities=20%  Similarity=0.316  Sum_probs=200.5

Q ss_pred             eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325           37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK  108 (368)
Q Consensus        37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~  108 (368)
                      .....+|.+.|.+++|+++  +|++|+.||+|++||+..    ....+..|...+.++.++  +.++++++.|+.|++|+
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445689999999999755  999999999999999763    244567899999999998  77999999999999999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC  188 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  188 (368)
                      +.+++....                                ..+|...|.+++|++++..+++++.|+.|++||+++++.
T Consensus       170 ~~~~~~~~~--------------------------------~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~  217 (337)
T d1gxra_         170 LHNQTLVRQ--------------------------------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ  217 (337)
T ss_dssp             TTTTEEEEE--------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccccccccc--------------------------------cccccccccccccccccccccccccccccccccccccee
Confidence            987653222                                223889999999999999999999999999999999998


Q ss_pred             EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325          189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV  267 (368)
Q Consensus       189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  267 (368)
                      +..+. +...|.+++|+|++ .+++++.|+.+++||++...       ......|...|.+++|+|++++|++++.||.|
T Consensus       218 ~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         218 LQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ecccc-cccceEEEEEcccccccceeccccccccccccccc-------cccccccccccceEEECCCCCEEEEEeCCCeE
Confidence            88775 78899999999999 99999999999999998652       34556788999999999999999999999999


Q ss_pred             EEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325          268 NFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ++||+++++....  ..|...+  ++++|++++|++|+.||+|+|||+
T Consensus       290 ~iwd~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         290 NAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEE--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999998776633  3355555  456678999999999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-36  Score=249.66  Aligned_cols=279  Identities=17%  Similarity=0.168  Sum_probs=210.2

Q ss_pred             cEEEEEecC--CEEEEccCCC-cEEEEcCC----cceecccCC-CCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCC
Q 047325           46 HIYSLAASK--DLLYTGSDSK-NIRVWKNL----KEFCGFKAS-SGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKN  113 (368)
Q Consensus        46 ~i~~~~~~~--~~l~s~~~dg-~i~iw~~~----~~~~~~~~~-~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~  113 (368)
                      .+++++|++  +.|+.++.+. .|+.|+..    .....+.+| ...|++++|+    +.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            346777764  4777665443 46778754    234566777 4679999996    5699999999999999998765


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEE
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLES  191 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~  191 (368)
                      .......                        .....+..|..+|.+++|+++++++++++.  ++.+++|+..+++.+..
T Consensus        99 ~~~~~~~------------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          99 ESNSVEV------------------------NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             GGTEEEE------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             ceeeeec------------------------ccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee
Confidence            4322211                        111233458899999999999999888764  67899999999999999


Q ss_pred             eecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEE
Q 047325          192 VSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVN  268 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~  268 (368)
                      +.+|...|.+++|+|++  .+++++.|+.+++||.+...   ..........+...|.+++|+|+ +++|++++.||.|+
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccc---cceecccccCCCCccEEeeeccccceecccccccccee
Confidence            99999999999999988  57889999999999987542   11222334567788999999996 68999999999999


Q ss_pred             EEeCCCccccceeeeccceEE----EEEE-eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC--eeEE--EEecC
Q 047325          269 FWEREKQLSHGGVLKGHKLAV----LCLA-AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP--VKCL--AVEED  339 (368)
Q Consensus       269 i~d~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~l--~~~~~  339 (368)
                      +||+++++.. ..+.+|...+    .++. +++++|++++.|+.|+|||++++  +++..+..|...  +..+  .+.++
T Consensus       232 iwd~~~~~~~-~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  308 (325)
T d1pgua1         232 CFDGKSGEFL-KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQLGNQQVGVVATGN  308 (325)
T ss_dssp             EEETTTCCEE-EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCGGGCEEEEEEEET
T ss_pred             eeeecccccc-ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC--CEEEEEEecCCcccCeEEEEEECCC
Confidence            9999987655 4555555543    4444 57899999999999999999887  566666555443  4444  44444


Q ss_pred             CeeeecCCcceEEEEEeeCCcccccccC
Q 047325          340 RDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +             .|++||.||+|++|
T Consensus       309 ~-------------~l~s~s~dg~i~vw  323 (325)
T d1pgua1         309 G-------------RIISLSLDGTLNFY  323 (325)
T ss_dssp             T-------------EEEEEETTSCEEEE
T ss_pred             C-------------EEEEEECCCEEEEE
Confidence            4             47899999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-36  Score=253.66  Aligned_cols=241  Identities=14%  Similarity=0.106  Sum_probs=193.8

Q ss_pred             CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325           81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS  158 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  158 (368)
                      ...+|+|++|+  +++|++|+.||.|++||+++++...                              ...+.+|.++|+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~------------------------------~~~l~gH~~~V~   55 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ------------------------------VHELKEHNGQVT   55 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE------------------------------EEEEECCSSCEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE------------------------------EEEecCCCCCEE
Confidence            45789999998  7899999999999999998654211                              223456999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      +++|+|++++|++|+.|+.|++||+.++..  ...+.+|...|.+++|+|++ .|++++.|+.+++|++.....  ....
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~--~~~~  133 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVC  133 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEE
T ss_pred             EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc--cccc
Confidence            999999999999999999999999987764  44556788999999999999 999999999999999876532  1122


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc-----------------cceeeeccceEE--EEEEeCC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS-----------------HGGVLKGHKLAV--LCLAAAG  296 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~  296 (368)
                      ......|...|.+++|+|++++|++|+.|+.|++||......                 .......|...+  ++++|++
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  213 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  213 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence            344566888999999999999999999999999999764321                 112234565555  4566789


Q ss_pred             CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC-cceEEEEE
Q 047325          297 KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS-SCAQRWIV  355 (368)
Q Consensus       297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l  355 (368)
                      ++|++++.|+.|++||+...  ..+..+..|..+|++++|+|++++++++. +...+|..
T Consensus       214 ~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         214 SRVAWVSHDSTVCLADADKK--MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY  271 (371)
T ss_dssp             SEEEEEETTTEEEEEEGGGT--TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             ccccccccCCcceEEeeecc--cceeeeecccccceeeeecCCCCEEEEEcCCceEEEEe
Confidence            99999999999999999876  67888899999999999999999776653 33444443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-34  Score=235.90  Aligned_cols=247  Identities=24%  Similarity=0.392  Sum_probs=208.2

Q ss_pred             EEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecc
Q 047325           68 VWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR  144 (368)
Q Consensus        68 iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (368)
                      .|... .+...+++|.++|++++|+  +++|++|+.||+|++||+++++....                           
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~---------------------------   54 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---------------------------   54 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---------------------------
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE---------------------------
Confidence            45443 3345688999999999998  78999999999999999988764332                           


Q ss_pred             cceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325          145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK  223 (368)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d  223 (368)
                           +.+|...|.+++++|++.+++++..++.+..|+....+....+..|...+.++.+++++ .+++++.|+.+++||
T Consensus        55 -----~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (317)
T d1vyhc1          55 -----LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE  129 (317)
T ss_dssp             -----ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             -----EeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEee
Confidence                 33499999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe---------
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---------  294 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------  294 (368)
                      ++...      ....+..|...+.+++|+|++++|++++.|+.|++|+.++.... ..+..|...+.++.+         
T Consensus       130 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~  202 (317)
T d1vyhc1         130 VQTGY------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSI  202 (317)
T ss_dssp             TTTCC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGG
T ss_pred             cccce------eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee-EEEecCCCCceEEEEeecccccee
Confidence            98762      45667788999999999999999999999999999999876554 445556555544432         


Q ss_pred             -------------CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcc
Q 047325          295 -------------AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLD  361 (368)
Q Consensus       295 -------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D  361 (368)
                                   .+.++++|+.|+.|++|++.+.  .++..+.+|..+|++++|+|++.            .|++|+.|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~------------~l~s~~~d  268 (317)
T d1vyhc1         203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK------------FILSCADD  268 (317)
T ss_dssp             GGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------CEEEEETT
T ss_pred             eccccceeeeeccCCceeEeccCCCEEEEEECCCC--cEEEEEeCCCCCEEEEEECCCCC------------EEEEEECC
Confidence                         2567999999999999998876  77888999999999999999999            45566666


Q ss_pred             cccccC
Q 047325          362 KSDDDV  367 (368)
Q Consensus       362 ~~v~i~  367 (368)
                      |.|++|
T Consensus       269 g~i~iw  274 (317)
T d1vyhc1         269 KTLRVW  274 (317)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            666665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-34  Score=241.59  Aligned_cols=276  Identities=21%  Similarity=0.300  Sum_probs=199.5

Q ss_pred             EccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325           59 TGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF  130 (368)
Q Consensus        59 s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  130 (368)
                      .+..++...+|+....      +.....|.+.|++++|+  |++|++|+ |+.|++||+.+++.............    
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~----  107 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK----  107 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc----
Confidence            4556777888885421      22334699999999998  77998886 89999999988775443322111000    


Q ss_pred             eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-e
Q 047325          131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L  209 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  209 (368)
                                ...........+|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.+++++ .
T Consensus       108 ----------~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (388)
T d1erja_         108 ----------DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             ---------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ----------cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence                      00111112234588899999999999999999999999999999999999999999999999999998 8


Q ss_pred             EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce------eee
Q 047325          210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG------VLK  283 (368)
Q Consensus       210 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~  283 (368)
                      +++++.++.+++||.+...      .......+...+....+.+++++|++++.||.|++||.++......      ...
T Consensus       178 ~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQ------CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             EEEEETTSEEEEEETTTTE------EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             ccccccceeeeeeeccccc------cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccccc
Confidence            9999999999999998652      2333333444444444445889999999999999999987654322      223


Q ss_pred             ccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCc----------eeeeEeeeccccCeeEEEEecCCeeeecCCcceE
Q 047325          284 GHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAI----------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQ  351 (368)
Q Consensus       284 ~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~  351 (368)
                      +|...+.+  +++++++|++|+.||.|++||+....          .........|...|++++|+|+++          
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------  321 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE----------  321 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC----------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC----------
Confidence            56666655  45689999999999999999986432          233455667899999999999999          


Q ss_pred             EEEEeeCCcccccccC
Q 047325          352 RWIVYSGSLDKSDDDV  367 (368)
Q Consensus       352 ~w~l~sg~~D~~v~i~  367 (368)
                        .|++|+.||.|++|
T Consensus       322 --~l~sg~~dg~i~vw  335 (388)
T d1erja_         322 --YILSGSKDRGVLFW  335 (388)
T ss_dssp             --EEEEEETTSEEEEE
T ss_pred             --EEEEEeCCCEEEEE
Confidence              45555566666555

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-33  Score=230.58  Aligned_cols=240  Identities=16%  Similarity=0.211  Sum_probs=185.4

Q ss_pred             ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325           74 EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI  151 (368)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (368)
                      ..+.+.+|...|++++|+  +++|++|+.||+|++||+++++.......                               
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------------------------------   52 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-------------------------------   52 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------------------------------
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------------------------------
Confidence            346788999999999998  78999999999999999988765433322                               


Q ss_pred             ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCC
Q 047325          152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC---LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHG  228 (368)
Q Consensus       152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  228 (368)
                      +|...|++++|+|++. +++++.|+.+++|+......   ......+...+.++++++++.+++++.++.+++|+.... 
T Consensus        53 ~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~-  130 (299)
T d1nr0a2          53 VHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL-  130 (299)
T ss_dssp             SCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE-
T ss_pred             CCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            2889999999999986 55667799999999865432   222345677889999999995556666789999996421 


Q ss_pred             CCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCC
Q 047325          229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADK  306 (368)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg  306 (368)
                             ...  .....+.+++|+|++++|++|+.||.|++||+++..........|...+.++  +|++++|++++.|+
T Consensus       131 -------~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         131 -------TEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             -------EEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -------ccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   122  2334578899999999999999999999999987665544555677766555  56789999999999


Q ss_pred             eEEEEecCCCc-eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          307 TICVWRRDGAI-HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       307 ~i~iw~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      .|++||+.+.. ......+.+|..+|++++|+|++.            .|++|+.|+.|++|
T Consensus       202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~------------~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV------------RLATGSLDNSVIVW  251 (299)
T ss_dssp             CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc------------ceEEEcCCCEEEEE
Confidence            99999987642 233456678999999999999999            45555556665555

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-33  Score=231.31  Aligned_cols=284  Identities=11%  Similarity=0.075  Sum_probs=198.5

Q ss_pred             ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeCCCeE
Q 047325           35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKI  104 (368)
Q Consensus        35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i  104 (368)
                      +++..+++|++.|++|+|+++  +||+|+.||+|+|||+...     ......|.++|.+++|.   +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            456778999999999999755  9999999999999997532     23344799999999997   4489999999999


Q ss_pred             EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325          105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS  184 (368)
Q Consensus       105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  184 (368)
                      ++|++............                               +........+.++...+++++.++.+++||++
T Consensus        82 ~~w~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNN-------------------------------EANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEECSSSSSSEEECBSC-------------------------------CCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             eeeeccccccccccccc-------------------------------ccccccccccccccccccccccccccceeecc
Confidence            99999877644333221                               33344455566778899999999999999987


Q ss_pred             CCeEE----EEeecC--CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc-CCCC
Q 047325          185 DSKCL----ESVSAH--DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS-SSRS  256 (368)
Q Consensus       185 ~~~~~----~~~~~~--~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  256 (368)
                      ++...    .....+  ........+.+.+ .+++++.|+.|++||++......   ...........+.+..+. .++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  207 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEECSGGGC
T ss_pred             ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc---eeeeecccccceeeeEeecCCCC
Confidence            54322    222222  2233444555555 89999999999999998664311   122223344445555554 4678


Q ss_pred             EEEEecCCCcEEEEeCCCccccc--------------eeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325          257 IVYCGSSDGLVNFWEREKQLSHG--------------GVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       257 ~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      .+++++.||.+.+|+........              .....|...+  ++++|++++|++|+.||.|++||+++.  +.
T Consensus       208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~--~~  285 (342)
T d1yfqa_         208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KK  285 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--EE
T ss_pred             EEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC--cE
Confidence            99999999999999976432211              0112343344  567788999999999999999999887  56


Q ss_pred             eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          321 LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       321 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      +..+..+ .++..++|+|++.            .+++++.|+.+++|
T Consensus       286 l~~~~~~-~~~~~~~~s~~~~------------~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         286 IKNFAKF-NEDSVVKIACSDN------------ILCLATSDDTFKTN  319 (342)
T ss_dssp             EEECCCC-SSSEEEEEEECSS------------EEEEEEECTHHHHC
T ss_pred             EEEecCC-CCCEEEEEEeCCC------------EEEEEEcCCcEEEe
Confidence            6666533 3455677888888            45555555555554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=225.90  Aligned_cols=242  Identities=14%  Similarity=0.128  Sum_probs=185.6

Q ss_pred             CceeeeccCcC-CcEEEEEecC----CEEEEccCCCcEEEEcCCcc----------eecccCCCCCeeEEEEe--CCEEE
Q 047325           34 NGLIGSLVREE-GHIYSLAASK----DLLYTGSDSKNIRVWKNLKE----------FCGFKASSGLVKAIVIS--GEKIF   96 (368)
Q Consensus        34 ~~~~~~~~~h~-~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~----------~~~~~~~~~~v~~~~~~--~~~l~   96 (368)
                      ...+..+.+|. ..|++++|+|    .+|++|+.||+|+|||....          ...+..|.++|.+++|+  +.+|+
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            34456677775 6799999964    39999999999999997521          12356788999999998  67777


Q ss_pred             EEeC--CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE-EEEEe
Q 047325           97 TGHQ--DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL-LYTAS  173 (368)
Q Consensus        97 s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~  173 (368)
                      +++.  ++.+++|+.++++....                                +.+|...|++++|+|++++ +++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~  179 (325)
T d1pgua1         132 VVGEGRDNFGVFISWDSGNSLGE--------------------------------VSGHSQRINACHLKQSRPMRSMTVG  179 (325)
T ss_dssp             EEECCSSCSEEEEETTTCCEEEE--------------------------------CCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             eeeccccceEEEEeeccccccee--------------------------------eeecccccccccccccccceEEEee
Confidence            7654  67899999987654322                                2238999999999998765 77899


Q ss_pred             CCCcEEEEEccCCeEEEEee---cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325          174 WDRTFKVWRISDSKCLESVS---AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA  248 (368)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~  248 (368)
                      .|+.+++||+...+....+.   .|...|.+++|+|++  ++++++.|+.|++||+++..      ....+..|..++..
T Consensus       180 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~------~~~~l~~~~~~v~~  253 (325)
T d1pgua1         180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQG  253 (325)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCCS
T ss_pred             cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc------cccccccccccccc
Confidence            99999999998887766554   467789999999975  88999999999999998663      45566667666655


Q ss_pred             EEEc---CCCCEEEEecCCCcEEEEeCCCccccceee-eccc--eEEEEEEeC-CCEEEEeeCCCeEEEEec
Q 047325          249 LVVS---SSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KGHK--LAVLCLAAA-GKLVFSGSADKTICVWRR  313 (368)
Q Consensus       249 ~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~--~~~~~~~~~-~~~l~~~~~dg~i~iw~~  313 (368)
                      +.|+   |++++|++++.|+.|++||+++++...... ..+.  ....++.+. +.+|++|+.||.|++||+
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            5544   688999999999999999999876553322 2222  223455553 568999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-32  Score=224.38  Aligned_cols=247  Identities=20%  Similarity=0.356  Sum_probs=205.6

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe-CCEEEEEe
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS-GEKIFTGH   99 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~-~~~l~s~~   99 (368)
                      -++...+.+..+..|.+.|.+++|+++  ++++|+.|+.+++|+....      ...+.+|.......... +..+....
T Consensus        82 Wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (340)
T d1tbga_          82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS  161 (340)
T ss_dssp             EETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE
T ss_pred             eecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccc
Confidence            345677888899999999999999865  9999999999999986532      33566777777776666 78888999


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .|.....+..........                                ...+...+....+.+.+.++++++.|+.|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         162 GDTTCALWDIETGQQTTT--------------------------------FTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             TTTEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             cccccccccccccccccc--------------------------------ccccceeEeeeccccccceeEEeecCceEE
Confidence            999999998765542221                                122677889999999999999999999999


Q ss_pred             EEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          180 VWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      +||+++++++..+.+|...|.+++|+|++ +|++|+.|+.|++||++....    ........+...+.+++|+|++++|
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE----LMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc----ccccccccccCceEEEEECCCCCEE
Confidence            99999999999999999999999999999 999999999999999986522    1122334567789999999999999


Q ss_pred             EEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEe
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~  312 (368)
                      ++|+.||.|++||+.+++.. ..+.+|...|.++  +|++++|++|+.||.|+|||
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~-~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999987655 5677888888655  46899999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-30  Score=218.38  Aligned_cols=275  Identities=19%  Similarity=0.284  Sum_probs=193.3

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCccee--cccC--CCCCeeEEEEe--CCEEEEEeCC
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFC--GFKA--SSGLVKAIVIS--GEKIFTGHQD  101 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~--~~~~--~~~~v~~~~~~--~~~l~s~~~d  101 (368)
                      -++...+++.++.+|.++|++++|+++ +|++|+.||+|++|+......  ....  +...+....+.  +.++++++.|
T Consensus        38 Wd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  117 (355)
T d1nexb2          38 YDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD  117 (355)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT
T ss_pred             EECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCC
Confidence            355677889999999999999999865 999999999999999875432  2222  22223334444  5689999999


Q ss_pred             CeEEEEeecCCCccccccCCccccc-----------ee------------------eeeccCCCC-ceeEec-ccceeee
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTL-----------KD------------------IFKSSIKPS-NYIEVR-RHRTALW  150 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~-----------~~------------------~~~~~~~~~-~~~~~~-~~~~~~~  150 (368)
                      +.|++||+.+...............           ..                  ......... ...... .......
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeee
Confidence            9999999987654322211100000           00                  000000000 001111 1122344


Q ss_pred             eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC
Q 047325          151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG  230 (368)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  230 (368)
                      .++...+.++.++|+++++++++.|+.|++||++++..+..+.+|...|.++++++ .+|++++.||.|++||++..   
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~---  273 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDY---  273 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTC---
T ss_pred             eccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc-ceeeeeeccccccccccccc---
Confidence            56788899999999999999999999999999999999999999999999999975 48999999999999999864   


Q ss_pred             cccccceeeccccccEEEE-EEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEEeeCCCeE
Q 047325          231 TKHSLAQTLLKQECAVTAL-VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFSGSADKTI  308 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i  308 (368)
                           ...+..|...+.++ .++++++++++| .||.|++||+++++.+.....+|...|.+++++++ ++++++.||.+
T Consensus       274 -----~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~  347 (355)
T d1nexb2         274 -----SRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQS  347 (355)
T ss_dssp             -----CEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCE
T ss_pred             -----ceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcE
Confidence                 23344455555555 456677766665 58999999999988776677789999988877655 55677899998


Q ss_pred             EEEec
Q 047325          309 CVWRR  313 (368)
Q Consensus       309 ~iw~~  313 (368)
                      +||.+
T Consensus       348 ~l~~~  352 (355)
T d1nexb2         348 FLEIL  352 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.8e-30  Score=208.37  Aligned_cols=244  Identities=22%  Similarity=0.349  Sum_probs=195.7

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEE
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRV  106 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v  106 (368)
                      -++...+++.++.+|.+.|++++|++++|++|+.||.|++|++.....  ....+.............++++..++.+.+
T Consensus        40 Wd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
T d1p22a2          40 WDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV  119 (293)
T ss_dssp             EESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred             EECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeE
Confidence            355678889999999999999999999999999999999999875433  333444444444445889999999999999


Q ss_pred             EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325          107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS  186 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  186 (368)
                      |+..........                             ..+..|...|..+.+.+  ..+++++.|+.|++||++++
T Consensus       120 ~~~~~~~~~~~~-----------------------------~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2         120 WDMASPTDITLR-----------------------------RVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             EECSSSSCCEEE-----------------------------EEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred             eecccccccccc-----------------------------ccccccccccccceecc--cccccccCCCceeeecCCCC
Confidence            998876532211                             12233778888887765  47889999999999999999


Q ss_pred             eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325          187 KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL  266 (368)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  266 (368)
                      +.+..+.++...+..+.+.+. .+++++.|+.|++||++...      .......+...+..  +.+++.+|++|+.||.
T Consensus       169 ~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         169 EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRC--IRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             CEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEE--EECCSSEEEEEETTSC
T ss_pred             cEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccce------eeeeecccceeeee--ccccceEEEEEcCCCE
Confidence            999999999999988887543 89999999999999998652      45566667777765  4567889999999999


Q ss_pred             EEEEeCCCcc--------ccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          267 VNFWEREKQL--------SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       267 i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                      |++||++...        .....+.+|...|.++++++.+|++|+.||+|++||
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            9999976422        223456789999999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-29  Score=207.32  Aligned_cols=279  Identities=18%  Similarity=0.305  Sum_probs=202.2

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEeCCEEEEEeCCCeEEE
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVISGEKIFTGHQDGKIRV  106 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v  106 (368)
                      -++..++++.++.+|.+.|.++++++++|++|+.|+++++|+.....  .....+...+......+..++.+..|+.+.+
T Consensus        42 Wd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  121 (342)
T d2ovrb2          42 WSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV  121 (342)
T ss_dssp             EETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             EECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEE
Confidence            35567788999999999999999999999999999999999987543  3445566667777777899999999999999


Q ss_pred             EeecCCCccccccCCccccce------eeeeccCCCCc-eeEec-ccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325          107 WKISPKNQSVHKRAGTLPTLK------DIFKSSIKPSN-YIEVR-RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF  178 (368)
Q Consensus       107 w~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  178 (368)
                      |+..+++..............      ........... ..... ......+.+|...+..+.+  ++.++++++.||.|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI  199 (342)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred             eecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeE
Confidence            999887654333221111110      00001111110 11111 1122344556666655544  67899999999999


Q ss_pred             EEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      ++||++.++++..+..|...+.++.++++ +|++++.|+.|++||+.....   .........|...+.++.++  ++++
T Consensus       200 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~  273 (342)
T d2ovrb2         200 RVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQFN--KNFV  273 (342)
T ss_dssp             EEEETTTCCEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCE---EEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred             EEeecccceeeeEecccccceeEEecCCC-EEEEEcCCCEEEEEecccccc---cccccccceeeeceeecccC--CCee
Confidence            99999999999999999999999988754 999999999999999986532   11222233466777777775  5799


Q ss_pred             EEecCCCcEEEEeCCCccccceee----eccceEEEEE--EeCCCEEEEeeCCCe----EEEEecCC
Q 047325          259 YCGSSDGLVNFWEREKQLSHGGVL----KGHKLAVLCL--AAAGKLVFSGSADKT----ICVWRRDG  315 (368)
Q Consensus       259 ~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~--~~~~~~l~~~~~dg~----i~iw~~~~  315 (368)
                      ++|+.||.|++||+++++......    .+|...|.++  +|++.+|++|+.||+    |++||++.
T Consensus       274 ~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999876654332    3566667555  567889999999985    99999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-30  Score=220.81  Aligned_cols=251  Identities=13%  Similarity=0.171  Sum_probs=169.4

Q ss_pred             ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325           76 CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD  155 (368)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (368)
                      ...++|.+.|.+++++++++++++.|++|++||..+.+........                          .....|..
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~--------------------------~~~~~~~~   61 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKS--------------------------YSHFVHKS   61 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGE--------------------------EEEECCTT
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCccccee--------------------------EeeeeccC
Confidence            3467999999999999999999999999999998765532211100                          00011222


Q ss_pred             CEeEE------EEcC-CCCEEEEEeCCCcEEEEEccCCeEEEE-----e-----ecCCCceEEEEeCCC-----C-eEEE
Q 047325          156 AVSCM------SLDQ-DCGLLYTASWDRTFKVWRISDSKCLES-----V-----SAHDDAVNSVVSSSE-----G-LIFT  212 (368)
Q Consensus       156 ~v~~~------~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~-----~~~~~~v~~~~~~~~-----~-~l~~  212 (368)
                      .+..+      .... +..++++++.||.|++|++........     .     ..+...+..+++.++     + ++++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (393)
T d1sq9a_          62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA  141 (393)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred             CceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE
Confidence            22222      2222 234678999999999999864322111     1     123345666766554     2 7899


Q ss_pred             EcCCCeEEEEEcCCCCCCcc------------cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-
Q 047325          213 GSADGTVKVWKREQHGKGTK------------HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-  279 (368)
Q Consensus       213 ~~~dg~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  279 (368)
                      ++.||.+++|++........            .........+...+.+++|+|++ +|++|+.||.|++||+++++... 
T Consensus       142 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~  220 (393)
T d1sq9a_         142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN  220 (393)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             EcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc
Confidence            99999999999864322000            00111222344568899999987 89999999999999998765432 


Q ss_pred             ----eeeeccceEEEE--EEeCCCEEEEeeCCC---eEEEEecCCCceeeeEee-------------eccccCeeEEEEe
Q 047325          280 ----GVLKGHKLAVLC--LAAAGKLVFSGSADK---TICVWRRDGAIHTCLSVL-------------TGHTGPVKCLAVE  337 (368)
Q Consensus       280 ----~~~~~~~~~~~~--~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~-------------~~h~~~v~~l~~~  337 (368)
                          ..+.+|...|.+  |+|++++|++|+.|+   .|++||++++  ..+..+             .+|.+.|++++|+
T Consensus       221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g--~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc--eeeeeeccccccccceeeeecccCceeeeccC
Confidence                234567777754  567999999999987   4999998875  333333             4899999999999


Q ss_pred             cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      |+++            +|+|||.|++||+|
T Consensus       299 pd~~------------~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         299 DSGE------------TLCSAGWDGKLRFW  316 (393)
T ss_dssp             SSSS------------EEEEEETTSEEEEE
T ss_pred             CCCC------------eeEEECCCCEEEEE
Confidence            9999            56666666666666

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-29  Score=206.39  Aligned_cols=252  Identities=13%  Similarity=0.138  Sum_probs=177.4

Q ss_pred             eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325           75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR  152 (368)
Q Consensus        75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (368)
                      ++..++|...|++|+|+  +++|++|+.||+|++||++.+.....                             .....+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~-----------------------------~~~~~~   54 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------------------LLQSLR   54 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------EEEEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE-----------------------------EEEecC
Confidence            45678999999999998  88999999999999999987653221                             112235


Q ss_pred             cCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE-EEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325          153 HSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SVVSSSEG-LIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       153 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |..+|.+++|+|+ +.+|++|+.|+.|++|++..+........+..... ...+.++. .+++++.++.+++||++....
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc
Confidence            9999999999986 45899999999999999998877766665544433 33344444 999999999999999875433


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee--eccceEEEE--E-EeCCCEEEEeeC
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLC--L-AAAGKLVFSGSA  304 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~l~~~~~  304 (368)
                      .....................+.++++.+++++.|+.|++||++.........  ..+.....+  . ..++..+++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             ceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC
Confidence            11111111111122334556677788999999999999999998655433222  122222222  2 236789999999


Q ss_pred             CCeEEEEecCCCcee-------e------eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          305 DKTICVWRRDGAIHT-------C------LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       305 dg~i~iw~~~~~~~~-------~------~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      ||.+.+|+++.....       .      ......|...|++++|+|++.            +|+||+.||+|++|
T Consensus       215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~------------~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK------------FLYTAGSDGIISCW  278 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC------------CEEEEETTSCEEEE
T ss_pred             CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc------------EEEEECCCCEEEEE
Confidence            999999987543110       0      111235677899999999999            67777788888777

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.4e-28  Score=206.59  Aligned_cols=270  Identities=9%  Similarity=0.001  Sum_probs=195.7

Q ss_pred             EEEEe-cCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCC--eEEEEeecCCCccccccCCc
Q 047325           48 YSLAA-SKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDG--KIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        48 ~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~vw~~~~~~~~~~~~~~~  122 (368)
                      ..+++ +|+++|+++ +|.|++||..........|...|.+++|+  |++|++++.+.  .|++||.++++...      
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~------   80 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK------   80 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE------
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE------
Confidence            45666 567888876 57999999986655455799999999998  67887766553  79999998875322      


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEE
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV  202 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  202 (368)
                                                 +..|...|.+++|+|++++|++++.++.+++|++.+++....+..|...+.++
T Consensus        81 ---------------------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          81 ---------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             ---------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             ---------------------------eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence                                       22388999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-eEEEE----------cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          203 VSSSEG-LIFTG----------SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       203 ~~~~~~-~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      +|+|+| +|+.+          ..++.+++||+...       .......+...+..++|+|+|+.|++++.++.+.+||
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccC-------ceeeecccccccccccccCCCCEEEEEeCCCceEccc
Confidence            999999 66643          34567999999764       2344455677788999999999999999999999998


Q ss_pred             CCCccccc------ee----------------------------------------------eeccceEEEEEEe--C--
Q 047325          272 REKQLSHG------GV----------------------------------------------LKGHKLAVLCLAA--A--  295 (368)
Q Consensus       272 ~~~~~~~~------~~----------------------------------------------~~~~~~~~~~~~~--~--  295 (368)
                      ........      ..                                              +..+...+..+..  .  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T d1k32a3         207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE  286 (360)
T ss_dssp             SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred             ccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCC
Confidence            54211000      00                                              0000011111111  1  


Q ss_pred             -CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEEeeCCccccc
Q 047325          296 -GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       296 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l~sg~~D~~v  364 (368)
                       ..++++++.++.|++||+.+.+.      ..|.+.|.+++|+|||+.++++  ++.+++|.+..+....++
T Consensus       287 ~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         287 FAAYYQGAPEKGVLLKYDVKTRKV------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCE------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             CeeEEEecCCCCEEEEEECCCCeE------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence             22456677889999999887521      2355679999999999966554  344555555555555444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-27  Score=192.70  Aligned_cols=229  Identities=15%  Similarity=0.088  Sum_probs=175.2

Q ss_pred             ccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325           40 LVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVH  117 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~  117 (368)
                      ..+|.+.|.++++.++ .+++++.|++|++|+.....     ....+..+.+. +..++..+.++.+.+|+..+++....
T Consensus        42 ~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS  116 (287)
T ss_dssp             ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc-----cccceeeeeeccCCceEEEeecccceeeeccceeeeee
Confidence            4689999999999855 88999999999999976432     22345666776 55666667788899999877654322


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-cEEEEEccCCeEEEEee-cC
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-TFKVWRISDSKCLESVS-AH  195 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~-~~  195 (368)
                      ..                                 +...+  .++++++..+++++.++ .+++|++...+....+. .+
T Consensus       117 ~~---------------------------------~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~  161 (287)
T d1pgua2         117 VR---------------------------------LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL  161 (287)
T ss_dssp             EE---------------------------------CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred             cc---------------------------------cccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeecc
Confidence            11                                 22333  45566777888888765 79999998776665554 46


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC----------CCEEEEecCC
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS----------RSIVYCGSSD  264 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~d  264 (368)
                      ...+.+++|+|++ +|++|+.||.|++||+.....     ....+..|...|.+++|+|.          +.+|++|+.|
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             CCceeEEEeccCccccccccccccccceeeccccc-----ccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            7889999999999 999999999999999976521     23345678899999999874          4689999999


Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEEEec
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~  313 (368)
                      +.|++||+++.........+|...|.++.+ ++..|++++.||.|++|++
T Consensus       237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            999999998766666677789888866653 2346899999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.1e-24  Score=182.42  Aligned_cols=261  Identities=10%  Similarity=0.099  Sum_probs=182.6

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCC--CcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDS--KNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDG  102 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~d--g~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  102 (368)
                      +...+..+. + +|.+.|.+++|+++  +|++++.+  ..|++||... ....+..|...|.+++|+  +++|++++.++
T Consensus        30 d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  107 (360)
T d1k32a3          30 DVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF  107 (360)
T ss_dssp             CTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccc
Confidence            344444444 3 79999999999876  66665544  3799999875 456678899999999998  78999999999


Q ss_pred             eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe---------
Q 047325          103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---------  173 (368)
Q Consensus       103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------  173 (368)
                      .+++|++.+++...                                .+..|...+.+++|+|++++|+.+.         
T Consensus       108 ~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3         108 EIMTVDLETGKPTV--------------------------------IERSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             EEEEEETTTCCEEE--------------------------------EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             ccccccccccceee--------------------------------eeecccccccchhhccceeeeeeeccccccceee
Confidence            99999998776422                                2233778889999999999998654         


Q ss_pred             -CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC----ccc--------------
Q 047325          174 -WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG----TKH--------------  233 (368)
Q Consensus       174 -~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----~~~--------------  233 (368)
                       .++.+++||+.+++..... .+...+..+.|+|+| .|++++.++.+.+||.......    ...              
T Consensus       156 ~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  234 (360)
T ss_dssp             CCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             ccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence             3456899999988766544 466778899999999 8999999999999986532110    000              


Q ss_pred             -------------------ccceeeccccccEEEEEEcCCC-------------CEEEEecCCCcEEEEeCCCcccccee
Q 047325          234 -------------------SLAQTLLKQECAVTALVVSSSR-------------SIVYCGSSDGLVNFWEREKQLSHGGV  281 (368)
Q Consensus       234 -------------------~~~~~~~~~~~~i~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~  281 (368)
                                         .....+....+....+...+++             .++++++.++.|++||+.+++..  .
T Consensus       235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~  312 (360)
T d1k32a3         235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--E  312 (360)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--E
T ss_pred             ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--E
Confidence                               0000001111223333333322             24555667889999999876432  2


Q ss_pred             eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC
Q 047325          282 LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP  330 (368)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~  330 (368)
                      ..++ ..-++|+|||++|++++.||.|++||++.+  ....++..+..|
T Consensus       313 ~~~~-v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~--~~~~~~~~d~~~  358 (360)
T d1k32a3         313 VKNN-LTDLRLSADRKTVMVRKDDGKIYTFPLEKP--EDERTVETDKRP  358 (360)
T ss_dssp             EEEE-EEEEEECTTSCEEEEEETTSCEEEEESSCT--TSCEECCCCSSC
T ss_pred             ecCC-cCEEEECCCCCEEEEEECCCeEEEEECCCC--CcceEEEecccc
Confidence            2222 334678899999999999999999999876  334444444444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.3e-24  Score=183.81  Aligned_cols=253  Identities=13%  Similarity=0.070  Sum_probs=169.8

Q ss_pred             EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      ++++++.||+|+|||+.+  .+..+..|. .+..++|+  |++|++++.||+|++||+.+++........          
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~----------  102 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----------  102 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe----------
Confidence            668899999999999874  455676664 58999998  889999999999999999988643322111          


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCce-----------
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAV-----------  199 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v-----------  199 (368)
                                       ...+|...+.+++|+|||++++++ ..++.+.+||..+++++..+..+...+           
T Consensus       103 -----------------~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2         103 -----------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             -----------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             -----------------CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence                             112366667778889999987555 578999999999999888777654443           


Q ss_pred             EEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCcc
Q 047325          200 NSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQL  276 (368)
Q Consensus       200 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  276 (368)
                      ..+..++++  .+++....+.+.+++......     .......+...+..+.++|++++++++. .+..+.+++..+..
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSS-----CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccc-----eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence            334444554  223333344555555443211     1223345667788999999998877765 34456666654322


Q ss_pred             cc-----------------------------------------------------ceeeeccceEE--EEEEeCCCEEEE
Q 047325          277 SH-----------------------------------------------------GGVLKGHKLAV--LCLAAAGKLVFS  301 (368)
Q Consensus       277 ~~-----------------------------------------------------~~~~~~~~~~~--~~~~~~~~~l~~  301 (368)
                      ..                                                     ...+.+|...+  ++++|++++|++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence            11                                                     11223343333  567889999994


Q ss_pred             -------eeCCCeEEEEecCCCceeeeEe---------eeccccCeeEEEEecCCeee
Q 047325          302 -------GSADKTICVWRRDGAIHTCLSV---------LTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       302 -------~~~dg~i~iw~~~~~~~~~~~~---------~~~h~~~v~~l~~~~~~~~~  343 (368)
                             ++.|++|++||+.+..  ...+         +..|...|.+++|+|||+.+
T Consensus       321 ~~~~~~s~~~~~tv~vwd~~t~~--~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         321 DTTFNPDARISQSVAVFDLKNLD--AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             CCTTCSSHHHHTCEEEEETTCTT--SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             eecCCCCcccCCEEEEEECCCCC--cCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence                   5668999999998763  2222         23456679999999999854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.5e-21  Score=159.03  Aligned_cols=255  Identities=14%  Similarity=0.131  Sum_probs=176.9

Q ss_pred             EEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           57 LYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        57 l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      .++++.|++|.+||+.+.  +..+.. ...+..++|+  |++| ++++.++.|++||+.+++......            
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------------   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------------   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------------
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee------------
Confidence            457788999999998754  333333 3456788888  6776 566789999999998876433221            


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--  208 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--  208 (368)
                                           ....+..+.+++++..+++ +..++.+.+||..+++....+..+ ....++.++|++  
T Consensus        72 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~  129 (301)
T d1l0qa2          72 ---------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK  129 (301)
T ss_dssp             ---------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred             ---------------------ccccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCe
Confidence                                 2235678999999886655 456778999999999988888755 456789999999  


Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-CcEEEEeCCCccccceeeeccce
Q 047325          209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GLVNFWEREKQLSHGGVLKGHKL  287 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~  287 (368)
                      .++++..++.+.+|+.....      ..... .....+..+.++|+++.+++++.+ +.+.+|+....... .....+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  201 (301)
T d1l0qa2         130 LYVTNNGDKTVSVINTVTKA------VINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKVEAA  201 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTE------EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECSSE
T ss_pred             eeeeeccccceeeeeccccc------eeeec-ccCCCceEEEeeccccceeeecccccccccccccceeee-ecccccCC
Confidence            55677778999999997652      22222 334557889999999988877665 56667776655443 23333332


Q ss_pred             -EEEEEEeCCCEEEEee---CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee-ecC--CcceEEEEEee
Q 047325          288 -AVLCLAAAGKLVFSGS---ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS-SST--SSCAQRWIVYS  357 (368)
Q Consensus       288 -~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-~~~--~~~~~~w~l~s  357 (368)
                       .-..+++++..++.+.   .++.|++||+.+.  +.+..+.. ...+.+++|+|||+.+ +++  ++.+.+|.+.+
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~--~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCC--eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence             2356778888776554   3578999998876  55666654 4568999999999853 222  23344554433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=3.1e-21  Score=165.19  Aligned_cols=305  Identities=9%  Similarity=-0.017  Sum_probs=196.2

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce-------ecccCCCCCeeEEEEe--CCEEE-
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF-------CGFKASSGLVKAIVIS--GEKIF-   96 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-------~~~~~~~~~v~~~~~~--~~~l~-   96 (368)
                      -++..++++.++..|. .+..++|+++  +|++++.|++|++||+.+..       ....+|.+.+.+++|+  |++++ 
T Consensus        47 wD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          47 VDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             EETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            3467788899998875 5899999865  99999999999999986432       2223455555566654  77764 


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccc--------cce-eeeeccCCCC----------ceeEecc----cceeeeeec
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLP--------TLK-DIFKSSIKPS----------NYIEVRR----HRTALWIRH  153 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~----------~~~~~~~----~~~~~~~~~  153 (368)
                      ++..++.+++||..++............        ... ..........          .......    .......++
T Consensus       126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence            5558999999999887654332211100        000 0011111111          0111100    011223467


Q ss_pred             CCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCC--CceEEEEe--CCCC--eEEEEcCCCeEEEEEcCC
Q 047325          154 SDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHD--DAVNSVVS--SSEG--LIFTGSADGTVKVWKREQ  226 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~--~l~~~~~dg~i~i~d~~~  226 (368)
                      ...+..+.++|++++++++. .+..+.++|..+++.+.......  .......+  ...+  ..+....|+.+.+|+...
T Consensus       206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~  285 (426)
T d1hzua2         206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  285 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred             CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence            78889999999999887776 45678999999999887775422  11222222  2223  334456688999998765


Q ss_pred             CCC-CcccccceeeccccccEEEEEEcCCCCEEEE-------ecCCCcEEEEeCCCccccceee--------eccceEE-
Q 047325          227 HGK-GTKHSLAQTLLKQECAVTALVVSSSRSIVYC-------GSSDGLVNFWEREKQLSHGGVL--------KGHKLAV-  289 (368)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~-  289 (368)
                      ... .........+.+|...+..++|+|++++|++       +..+++|++||+++.+......        ..|...+ 
T Consensus       286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~  365 (426)
T d1hzua2         286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  365 (426)
T ss_dssp             TTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred             cccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence            422 1222455667788899999999999999995       5567899999998876553332        2333344 


Q ss_pred             -EEEEeCCCEEEE-----eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325          290 -LCLAAAGKLVFS-----GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS  342 (368)
Q Consensus       290 -~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  342 (368)
                       ..|+|||++++.     ++.+|.|+|||..+.  +....+.++.      .++|+|++
T Consensus       366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~--k~~~~i~~~~------~~tp~Gk~  416 (426)
T d1hzua2         366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL--KLKAVVKDPR------LITPTGKF  416 (426)
T ss_dssp             EEEECSSSSEEEEEECCCTTSCCEEEEEETTTT--EEEEEECCTT------CCSEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCCeEEEEECCCC--eEEEEECCCC------ccCCCceE
Confidence             467889997743     246899999998887  5666666654      34677774

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.2e-22  Score=172.12  Aligned_cols=282  Identities=5%  Similarity=-0.087  Sum_probs=182.5

Q ss_pred             cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe--CCEE-E
Q 047325           29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS--GEKI-F   96 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~--~~~l-~   96 (368)
                      -+...++++..+..|. .+..++|+++  ++++++.||+|++||+.+.       +.....|.+.+.+..|+  |++| +
T Consensus        47 ~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          47 IDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             EETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            4467788999998874 6899999866  9999999999999997642       12223455555555554  7775 6


Q ss_pred             EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCC
Q 047325           97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWD  175 (368)
Q Consensus        97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d  175 (368)
                      +++.++.|++||..+++.............                     .....+......+.++|++..+ ++...+
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYD---------------------EQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTT---------------------TCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCcccc---------------------ceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            788899999999998875443322110000                     0011255667789999998876 455667


Q ss_pred             CcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCCccccc-----------------
Q 047325          176 RTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKGTKHSL-----------------  235 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----------------  235 (368)
                      +.|.+||..+.+...... .+...+..++++|++ +++++ ..++.+.++|.+..........                 
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            899999998877554333 345678899999999 55544 4566888888865421000000                 


Q ss_pred             ----c-----------------eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe
Q 047325          236 ----A-----------------QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA  294 (368)
Q Consensus       236 ----~-----------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  294 (368)
                          .                 .....+...+....++|++..+++++.++..++|+.......     .......++ |
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-----~~~~~sv~v-p  338 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-----AEISGSVAV-F  338 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-----HHHHTCEEE-E
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC-----CCeeeEEEE-E
Confidence                0                 000011224555556666666666666666677764432111     000111233 8


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  343 (368)
                      |++.+++++.|+.+++|++.+.     ..+..|...|.+++|+|||+.+
T Consensus       339 Dg~~la~~s~d~~~k~w~~~~~-----~~l~~~~~~v~~~~fS~DG~~v  382 (432)
T d1qksa2         339 DIKAMTGDGSDPEFKTLPIAEW-----AGITEGQPRVVQGEFNKDGTEV  382 (432)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHH-----HTCCSSCCEEEEEEECTTSSEE
T ss_pred             echhhcccccCCceEecccccc-----cccCCCCCcEEEeEECCCCCEE
Confidence            9999999999999999987443     2234577789999999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2e-21  Score=160.80  Aligned_cols=254  Identities=7%  Similarity=-0.015  Sum_probs=166.4

Q ss_pred             CEEEEccCCCcEEEEcCCcc--eeccc--CCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325           55 DLLYTGSDSKNIRVWKNLKE--FCGFK--ASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK  127 (368)
Q Consensus        55 ~~l~s~~~dg~i~iw~~~~~--~~~~~--~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  127 (368)
                      +++++++.|++|++||+.+.  +..+.  .+...+.+++++  |+++ ++++.++.|.+||+.+++...........   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~---   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc---
Confidence            58999999999999999854  33333  345567788887  6776 56678999999999988754433221100   


Q ss_pred             eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------------CCCcEEEEEccCCeEEEEeecC
Q 047325          128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------------WDRTFKVWRISDSKCLESVSAH  195 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~  195 (368)
                                              .+...+..++++|++++++++.            .+..+.+||..+++.+..+.. 
T Consensus        79 ------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  133 (337)
T d1pbyb_          79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             ------------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-
Confidence                                    0233455789999999998876            357899999999999888875 


Q ss_pred             CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce---------------eec--cccccEEEEEEcCCCCE
Q 047325          196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ---------------TLL--KQECAVTALVVSSSRSI  257 (368)
Q Consensus       196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~--~~~~~i~~~~~~~~~~~  257 (368)
                      ...+..++++|++ ++++++.  .+.+||..............               ...  .+...........+...
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence            4557889999999 7777764  46788887542110000000               000  00011111122222333


Q ss_pred             EEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325          258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA  335 (368)
Q Consensus       258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~  335 (368)
                      ...+..++.+.+|+..++.........+....  ..+.+++.+++.+  ++.|++||+.+.  +.+..+. +...+.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~--~~~~~~~-~~~~~~~~~  286 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--ASIKRVP-LPHSYYSVN  286 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--EEEEEEE-CSSCCCEEE
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCC--cEEEEEc-CCCCEEEEE
Confidence            33444556788999887765544455554444  4455677777665  589999999887  5555553 567789999


Q ss_pred             EecCCeee
Q 047325          336 VEEDRDSS  343 (368)
Q Consensus       336 ~~~~~~~~  343 (368)
                      |+|||..+
T Consensus       287 ~s~dG~~l  294 (337)
T d1pbyb_         287 VSTDGSTV  294 (337)
T ss_dssp             ECTTSCEE
T ss_pred             ECCCCCEE
Confidence            99999943

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=2.8e-19  Score=145.33  Aligned_cols=251  Identities=14%  Similarity=0.186  Sum_probs=178.1

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCC--EE-EEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CC-EEEEEeCC
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKD--LL-YTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GE-KIFTGHQD  101 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l-~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~-~l~s~~~d  101 (368)
                      ++...++++++... +.+..++++++  +| ++++.++.|++||+.+.  +..+..+. .+..+.++  +. .++++..+
T Consensus        18 D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          18 DVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             ETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccccccc
Confidence            45566777777544 45678888765  55 67788999999998754  34455554 45778887  55 45566678


Q ss_pred             CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCCcEEE
Q 047325          102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDRTFKV  180 (368)
Q Consensus       102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i  180 (368)
                      +.+.+|+..+++.....                                 .+.....++.++|++..++. +..++.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             TEEEEEETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeeecccccceeeeec---------------------------------cccccceEEEeecCCCeeeeeeccccceee
Confidence            89999998876533222                                 14566788999999987755 456788999


Q ss_pred             EEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325          181 WRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV  258 (368)
Q Consensus       181 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (368)
                      |+..+++.+..+..+ ..+..+.+++++ .++++. .++.+.+|+....       ...........+..++++++++.+
T Consensus       143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~  214 (301)
T d1l0qa2         143 INTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-------SVIDTVKVEAAPSGIAVNPEGTKA  214 (301)
T ss_dssp             EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-------EEEEEEECSSEEEEEEECTTSSEE
T ss_pred             eeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccce-------eeeecccccCCcceeecccccccc
Confidence            999999988888754 457889999988 555554 4567778877643       122223344567889999999987


Q ss_pred             EEec---CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEE-EEeeCCCeEEEEecCCCceeeeEeee
Q 047325          259 YCGS---SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLV-FSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       259 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +.+.   .++.|++||+.+++.......+....-++++|||++| ++++.|+.|++||+.++  +.+.++.
T Consensus       215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~--~~~~~~~  283 (301)
T d1l0qa2         215 YVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN--TITATMA  283 (301)
T ss_dssp             EEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEE
T ss_pred             ccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEEEe
Confidence            7654   3468999999987665443333344457888999976 57778999999999887  5555554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.3e-20  Score=158.48  Aligned_cols=273  Identities=11%  Similarity=0.031  Sum_probs=182.2

Q ss_pred             EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325           56 LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK  131 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  131 (368)
                      ++++.+.||+|.|||..+  .+..+..+ ..+..++|+  |+++++++.||.|++||+.+++........          
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~----------  102 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----------  102 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe----------
Confidence            568999999999999874  45566666 468999998  889999999999999999877643221111          


Q ss_pred             ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecC-----------CCce
Q 047325          132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAH-----------DDAV  199 (368)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~v  199 (368)
                                       ...+|...+.+..|+|||++| ++++.++.|++||..+++++..+..+           ....
T Consensus       103 -----------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         103 -----------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             -----------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -----------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence                             111255566667788999976 67788999999999999988877643           3456


Q ss_pred             EEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCcc
Q 047325          200 NSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQL  276 (368)
Q Consensus       200 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  276 (368)
                      ..+.+++++  .+++...++.|.+||......     .......+...+..++|+|+++++++++. ++.+.++|.++.+
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            678889988  567778899999999875422     11122234556889999999998776654 5578889988765


Q ss_pred             ccceeeec----cceEEEEEE-eC-CCEEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--C
Q 047325          277 SHGGVLKG----HKLAVLCLA-AA-GKLVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--S  347 (368)
Q Consensus       277 ~~~~~~~~----~~~~~~~~~-~~-~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~  347 (368)
                      .......+    |......+. +. +...++. ..|+.|.+|+....      ....|...+....++|++..++++  +
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~------~~~~~~~~v~~~~~~~~g~~~~~~s~p  314 (432)
T d1qksa2         241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE------GHPDNAWKILDSFPALGGGSLFIKTHP  314 (432)
T ss_dssp             EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT------TCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             EEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc------cccccccEEEEEEEcCCCCeEEEEecC
Confidence            54322221    222222222 23 2333333 24788999976543      123455556666666665443332  2


Q ss_pred             cceEEEE---------------------EeeCCcccccccC
Q 047325          348 SCAQRWI---------------------VYSGSLDKSDDDV  367 (368)
Q Consensus       348 ~~~~~w~---------------------l~sg~~D~~v~i~  367 (368)
                      ...++|.                     +++++.|+++|+|
T Consensus       315 ~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w  355 (432)
T d1qksa2         315 NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  355 (432)
T ss_dssp             TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             CccceeecccCCCCCCeeeEEEEEechhhcccccCCceEec
Confidence            3344443                     5667788888877

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.1e-19  Score=145.53  Aligned_cols=271  Identities=13%  Similarity=0.216  Sum_probs=176.1

Q ss_pred             EEEEccCCCcEEEEcCCc--cee--cccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCcccccee
Q 047325           56 LLYTGSDSKNIRVWKNLK--EFC--GFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKD  128 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~--~~~--~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  128 (368)
                      .+++++.|++|++|++..  .+.  ....|.+.+..|+|+  |++|++++ .|+.|++|++...........        
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--------   77 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--------   77 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--------
Confidence            467888999999999753  233  233678889999998  77886555 589999999987653221110        


Q ss_pred             eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEE--eecCCCceEEEEeC
Q 047325          129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLES--VSAHDDAVNSVVSS  205 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~  205 (368)
                                           ...+...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++
T Consensus        78 ---------------------~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          78 ---------------------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS  136 (333)
T ss_dssp             ---------------------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred             ---------------------ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence                                 1114456778999999999999885 66899999877665443  33466678889999


Q ss_pred             CCC-eEEEE-cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceee
Q 047325          206 SEG-LIFTG-SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       206 ~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  282 (368)
                      |++ .++++ ..+..|.+|+.........................++|++++..++... ..+...+++...........
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence            999 44444 4567899999876533111111122223445578899999998876554 55677888765432211110


Q ss_pred             -----------eccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCcee-eeEeeeccccCeeEEEEecCCeeeecCC--
Q 047325          283 -----------KGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHT-CLSVLTGHTGPVKCLAVEEDRDSSSSTS--  347 (368)
Q Consensus       283 -----------~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~--  347 (368)
                                 .........+++++++++.. ..++.+.+|+++..... .+.........+.+++|+|||+++++++  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence                       01122335677888866554 56789999998754222 2222333456688999999999754432  


Q ss_pred             -cceEEEEE
Q 047325          348 -SCAQRWIV  355 (368)
Q Consensus       348 -~~~~~w~l  355 (368)
                       +.+.+|.+
T Consensus       297 ~~~v~v~~i  305 (333)
T d1ri6a_         297 SHHISVYEI  305 (333)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence             33555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=9.5e-21  Score=157.30  Aligned_cols=264  Identities=8%  Similarity=0.044  Sum_probs=166.8

Q ss_pred             cCCEEEEccCCCcEEEEcCCcc--eeccc-CCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccc
Q 047325           53 SKDLLYTGSDSKNIRVWKNLKE--FCGFK-ASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTL  126 (368)
Q Consensus        53 ~~~~l~s~~~dg~i~iw~~~~~--~~~~~-~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  126 (368)
                      ++++|++++.|++|.+||+.+.  +..++ .|...+.+++|+  |+++ +++..++.|.+||+.+++............ 
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-   85 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-   85 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc-
Confidence            3559999999999999999854  33444 455677899997  6676 556679999999999886543332211100 


Q ss_pred             eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------------CCCcEEEEEccCCeEEEEeec
Q 047325          127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------------WDRTFKVWRISDSKCLESVSA  194 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~  194 (368)
                                               .+...+..++|+|||+++++++            .++.+.+||..+++....+..
T Consensus        86 -------------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          86 -------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             -------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             -------------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence                                     0223456789999999888775            467889999888765544432


Q ss_pred             --CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE---------------------
Q 047325          195 --HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV---------------------  251 (368)
Q Consensus       195 --~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------  251 (368)
                        ....+..+.+++++.+++.+  +.+.+|+..+...      ...+..+ .....+.+                     
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         141 FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKY------TVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             EECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCE------EEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eeccCceEEEEecCCCEEEEeC--CcceEEEccCCCE------EEEEecC-CCccceEEeccccEEEEEecCCCceEeee
Confidence              23445667778888555544  4588888865432      1111111 11111112                     


Q ss_pred             -----cCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325          252 -----SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL  324 (368)
Q Consensus       252 -----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  324 (368)
                           .+....++++..++.+.+||..+..........+...+.  .+++++.+++.+. ++.|++||..+.  +.+..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--~~~~~~  288 (346)
T d1jmxb_         212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--KLIKAA  288 (346)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT--EEEEEE
T ss_pred             eeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC--cEEEEE
Confidence                 223334445555667888888877666555555655543  3445677777665 457999998876  555555


Q ss_pred             eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325          325 TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV  367 (368)
Q Consensus       325 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~  367 (368)
                      . +...+.+++|+|||+.            |++++.|+.|++|
T Consensus       289 ~-~~~~~~~va~s~DG~~------------l~v~~~d~~v~v~  318 (346)
T d1jmxb_         289 N-LDHTYYCVAFDKKGDK------------LYLGGTFNDLAVF  318 (346)
T ss_dssp             E-CSSCCCEEEECSSSSC------------EEEESBSSEEEEE
T ss_pred             c-CCCCEEEEEEcCCCCE------------EEEEeCCCcEEEE
Confidence            4 4567999999999994            4555555555554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.5e-18  Score=143.24  Aligned_cols=252  Identities=8%  Similarity=0.041  Sum_probs=170.5

Q ss_pred             cccCCCceeeeccCc--CCcEEEEEecCC--EE-EEccCCCcEEEEcCCcc--eecccCC-----CCCeeEEEEe--CCE
Q 047325           29 ENLPQNGLIGSLVRE--EGHIYSLAASKD--LL-YTGSDSKNIRVWKNLKE--FCGFKAS-----SGLVKAIVIS--GEK   94 (368)
Q Consensus        29 ~~~~~~~~~~~~~~h--~~~i~~~~~~~~--~l-~s~~~dg~i~iw~~~~~--~~~~~~~-----~~~v~~~~~~--~~~   94 (368)
                      -++...++++++..+  ...+.+++++++  ++ ++++.++.|.+||+.+.  +.....+     ...+..++++  +++
T Consensus        16 ~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~   95 (337)
T d1pbyb_          16 IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT   95 (337)
T ss_dssp             EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE
T ss_pred             EECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcE
Confidence            345666777777543  455778888755  54 67788999999998753  2333333     2334566776  677


Q ss_pred             EEEEeC------------CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           95 IFTGHQ------------DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        95 l~s~~~------------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      ++++..            ++.+.+||..+++.....                                 .+...+..+++
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------------------------------~~~~~~~~~~~  142 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------------------------------EAPRQITMLAW  142 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------------------------------ECCSSCCCEEE
T ss_pred             EEEeecCCcceeeeccccccceeeccccCCeEEEec---------------------------------cccCCceEEEE
Confidence            777764            556677777665432211                                 14456788999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-------------------------eEEEEcCCC
Q 047325          163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-------------------------LIFTGSADG  217 (368)
Q Consensus       163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~l~~~~~dg  217 (368)
                      +|+++++++++.  .+.+||..+++....+..+... ....+.+++                         ....+..++
T Consensus       143 s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         143 ARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             CTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             cCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCc
Confidence            999999998864  4788999999988877543221 111111111                         111223345


Q ss_pred             eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325          218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK  297 (368)
Q Consensus       218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (368)
                      .+.+||......     .......+...+..+.++|++.+++.+  ++.|++||+++++.......++....++++|||+
T Consensus       220 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         220 GLLTMDLETGEM-----AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEETTTCCE-----EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSC
T ss_pred             cEEEEEcCCCcE-----EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCC
Confidence            688888775421     223344566778889999999988776  4889999999887776665566666688899999


Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325          298 LVFSGSADKTICVWRRDGAIHTCLSVLT  325 (368)
Q Consensus       298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~  325 (368)
                      +|++++.||.|++||.++.  +.+.++.
T Consensus       293 ~l~v~~~~~~i~v~D~~t~--~~v~~i~  318 (337)
T d1pbyb_         293 TVWLGGALGDLAAYDAETL--EKKGQVD  318 (337)
T ss_dssp             EEEEESBSSEEEEEETTTC--CEEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCC--cEEEEEE
Confidence            9999999999999999876  5555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=2.2e-15  Score=125.99  Aligned_cols=272  Identities=8%  Similarity=-0.004  Sum_probs=171.3

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCCEEEEcc----------CCCcEEEEcCCcc--eecccCCCCCeeEEEEe------
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKDLLYTGS----------DSKNIRVWKNLKE--FCGFKASSGLVKAIVIS------   91 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~----------~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~------   91 (368)
                      +...++++.++..+..+-..++.+|.+|++++          .++.|.+||..+.  ......+......+...      
T Consensus        53 D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          53 DAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             ECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            35667778777777665333333455776653          4678999998743  33444444444333222      


Q ss_pred             ---CCEEEEE--eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC
Q 047325           92 ---GEKIFTG--HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC  166 (368)
Q Consensus        92 ---~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  166 (368)
                         ++.++..  ..++.+.+|+....+.                                    ..+.....++.++|++
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~s~~g  176 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGGSSD------------------------------------DQLLSSPTCYHIHPGA  176 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccCCeE------------------------------------EEEeccceeEEEecCC
Confidence               3332222  2334455555443321                                    1244556788999988


Q ss_pred             CE-EEEEeCCCcEEEEEccCCeEEEEeecCC------CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc----
Q 047325          167 GL-LYTASWDRTFKVWRISDSKCLESVSAHD------DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL----  235 (368)
Q Consensus       167 ~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  235 (368)
                      +. +++.+.|+.+.+||...++.......+.      .....+.+.+++.++..+.++.+.+|+............    
T Consensus       177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  256 (373)
T d2madh_         177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecccc
Confidence            75 4678889999999999888776554321      223445666777777778899999999876432000000    


Q ss_pred             --ceeeccccccEEEEEEcCCCCE----------EEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCC--EEEE
Q 047325          236 --AQTLLKQECAVTALVVSSSRSI----------VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFS  301 (368)
Q Consensus       236 --~~~~~~~~~~i~~~~~~~~~~~----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~  301 (368)
                        .............+++++++..          ++....++.+.+||..+++.......++...-+.|+|||+  ++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt  336 (373)
T d2madh_         257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             CcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEE
Confidence              0000011122334555555544          4455667789999999887765555556666688899998  4568


Q ss_pred             eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ++.|+.|++||+.++  +.+.++..+....+.|++.++
T Consensus       337 ~~~d~~v~v~D~~tg--~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         337 SAGTEVLHIYDAGAG--DQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             eCCCCeEEEEECCCC--CEEEEECCCCCCCcEEEEecC
Confidence            899999999999887  778889888888888887665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=3.1e-17  Score=135.78  Aligned_cols=259  Identities=9%  Similarity=-0.013  Sum_probs=172.4

Q ss_pred             ccccCCCceeeecc-CcCCcEEEEEecCC---EEEEccCCCcEEEEcCCccee--cccC------CCCCeeEEEEe--CC
Q 047325           28 EENLPQNGLIGSLV-REEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFC--GFKA------SSGLVKAIVIS--GE   93 (368)
Q Consensus        28 ~~~~~~~~~~~~~~-~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~--~~~~------~~~~v~~~~~~--~~   93 (368)
                      .-++...++++++. .|...+.+++|+++   ++++++.++.|++||+.+...  .+..      +...+..++++  |+
T Consensus        22 v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~  101 (346)
T d1jmxb_          22 VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK  101 (346)
T ss_dssp             EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred             EEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC
Confidence            34567788888876 45667889999765   457778899999999875422  2211      12234567776  67


Q ss_pred             EEEEEe------------CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           94 KIFTGH------------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        94 ~l~s~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      ++++++            .++.+.+|+..+++........                              .....+..+.
T Consensus       102 ~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~  151 (346)
T d1jmxb_         102 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------------------------------PMPRQVYLMR  151 (346)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------------------------------ECCSSCCCEE
T ss_pred             EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee------------------------------eccCceEEEE
Confidence            777665            4677888887765532221110                              1234455666


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC---------------------------eEEEEc
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---------------------------LIFTGS  214 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------~l~~~~  214 (368)
                      +.+++..+++   ++.+.+||+.+++.+..+..+.. ...+.++|++                           .++++.
T Consensus       152 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
T d1jmxb_         152 AADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  227 (346)
T ss_dssp             ECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             ecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence            7777765543   25699999999998888764432 2333344443                           222233


Q ss_pred             CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe
Q 047325          215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA  294 (368)
Q Consensus       215 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  294 (368)
                      .+..+.+||......     .......+...+..+.+++++..++.... +.|.+||..+++.......++...-++++|
T Consensus       228 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~  301 (346)
T d1jmxb_         228 LLYGYLSVDLKTGKT-----HTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDK  301 (346)
T ss_dssp             EEEEEEEEETTTCCE-----EEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred             CCceEEEEECCCCce-----EEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcC
Confidence            345566777665421     23334456777888999998888877654 679999999887776565567777789999


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT  328 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~  328 (368)
                      ||++|++++.||.|++||.++.  +.+.++..+.
T Consensus       302 DG~~l~v~~~d~~v~v~D~~t~--~~i~~i~~p~  333 (346)
T d1jmxb_         302 KGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPG  333 (346)
T ss_dssp             SSSCEEEESBSSEEEEEETTTT--EEEEEEECSS
T ss_pred             CCCEEEEEeCCCcEEEEECccC--CEEEEEECCC
Confidence            9999999999999999999876  6666666443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=7.9e-16  Score=128.78  Aligned_cols=290  Identities=10%  Similarity=-0.037  Sum_probs=175.3

Q ss_pred             ccCcCCcEEEEEecCC--EEEEc-----cCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe---------
Q 047325           40 LVREEGHIYSLAASKD--LLYTG-----SDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH---------   99 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l~s~-----~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~---------   99 (368)
                      ...+.+++.+++++++  .++..     +.++.|.+||..+.  +..+..+..+  .+.|+  |++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            3467788888888766  55432     34467999997643  4445555444  45665  88888764         


Q ss_pred             -CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCC
Q 047325          100 -QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDR  176 (368)
Q Consensus       100 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~  176 (368)
                       .++.|.+||..+++.............                      .   -......+.|+++++.++...  .++
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~----------------------~---~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRF----------------------D---VGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCccee----------------------E---eccCCCcEEEEeCCCcEEEEEEcCCC
Confidence             468899999998875443322111000                      0   011224578899988766554  456


Q ss_pred             cEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC
Q 047325          177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  254 (368)
                      .+.+|+....+......    ...++.++|++  .+++.+.|+.+.+|+.........................+.+.++
T Consensus       149 ~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            88999988877655443    35677888888  6778899999999998765321111111111122223345556666


Q ss_pred             CCEEEEecCCCcEEEEeCCCccccce-eee------------ccceEEEEEEeCC----------CEEEEeeCCCeEEEE
Q 047325          255 RSIVYCGSSDGLVNFWEREKQLSHGG-VLK------------GHKLAVLCLAAAG----------KLVFSGSADKTICVW  311 (368)
Q Consensus       255 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~------------~~~~~~~~~~~~~----------~~l~~~~~dg~i~iw  311 (368)
                      +.+ +..+.++.+.+|+......... ...            ........+++++          ..+++...++.+.+|
T Consensus       225 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         225 GRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            544 4555788899998775432111 000            1111223444444          344556677889999


Q ss_pred             ecCCCceeeeEeeeccccCeeEEEEecCCeee--ec--CCcceEEEEEeeCCccccc
Q 047325          312 RRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS--SS--TSSCAQRWIVYSGSLDKSD  364 (368)
Q Consensus       312 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--~~--~~~~~~~w~l~sg~~D~~v  364 (368)
                      |..+.  +.+..+. +...+.+++|+|||+.+  ++  .++.+.+|.+.+|..-++|
T Consensus       304 d~~t~--~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         304 TGLVG--QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ECCCC--cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            88776  5555553 66789999999999742  22  3445667777666554444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=3.1e-17  Score=136.44  Aligned_cols=258  Identities=10%  Similarity=0.052  Sum_probs=158.3

Q ss_pred             EEecCCEEEEc-----cCCCcEEEEcCCcce--ecccCCCCCeeEEEEe--CCEEEEE----------eCCCeEEEEeec
Q 047325           50 LAASKDLLYTG-----SDSKNIRVWKNLKEF--CGFKASSGLVKAIVIS--GEKIFTG----------HQDGKIRVWKIS  110 (368)
Q Consensus        50 ~~~~~~~l~s~-----~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~----------~~dg~i~vw~~~  110 (368)
                      .+.++..++..     ..+++|.+||..+..  ..+..+  ....++|+  |++|+++          ..|+.|++||..
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            34455555443     446689999987543  334433  34467777  7767654          458899999999


Q ss_pred             CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeE
Q 047325          111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKC  188 (368)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~  188 (368)
                      +++.............                         ........++|+|++++++++.  .+..+.+||..+++.
T Consensus        87 t~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          87 TLLPTADIELPDAPRF-------------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             TCCEEEEEEETTCCCC-------------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             CCCEEEEEecCCccee-------------------------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8875443222110000                         0122334567888887776664  345677788777765


Q ss_pred             EEEeecCC---------------------------------------------CceEEEEeCCCC-eEEEEcCCCeEEEE
Q 047325          189 LESVSAHD---------------------------------------------DAVNSVVSSSEG-LIFTGSADGTVKVW  222 (368)
Q Consensus       189 ~~~~~~~~---------------------------------------------~~v~~~~~~~~~-~l~~~~~dg~i~i~  222 (368)
                      +..+..+.                                             ..+....+.+++ .++.++.++.+++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred             eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEE
Confidence            55443211                                             111122233333 67778889999999


Q ss_pred             EcCCCCCCcccccceeecc----------ccccEEEEEEcCCCCEEEEecCC----------CcEEEEeCCCccccceee
Q 047325          223 KREQHGKGTKHSLAQTLLK----------QECAVTALVVSSSRSIVYCGSSD----------GLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~  282 (368)
                      ++..+...    .......          .......+++++++..++....+          ..|.+||..+++......
T Consensus       222 ~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~  297 (355)
T d2bbkh_         222 DLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  297 (355)
T ss_dssp             ECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ecCCCcEE----EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec
Confidence            98765320    1111110          11223457889999988776543          369999999877664444


Q ss_pred             eccceEEEEEEeCCC--EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325          283 KGHKLAVLCLAAAGK--LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR  340 (368)
Q Consensus       283 ~~~~~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  340 (368)
                      .++...-+.++|||+  ++++++.|+.|++||..++  +.+.++..+......+.+.++|
T Consensus       298 ~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg--~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--EELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC--CEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC--CEEEEEeCcCCCccEEEeCCCC
Confidence            444444577889987  4567788999999999887  6778887777666777666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.8e-14  Score=118.25  Aligned_cols=256  Identities=12%  Similarity=0.152  Sum_probs=163.4

Q ss_pred             ccCcCCcEEEEEecCC--EE-EEccCCCcEEEEcCCcc--e---ecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEe
Q 047325           40 LVREEGHIYSLAASKD--LL-YTGSDSKNIRVWKNLKE--F---CGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWK  108 (368)
Q Consensus        40 ~~~h~~~i~~~~~~~~--~l-~s~~~dg~i~iw~~~~~--~---~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~  108 (368)
                      ...|.+.+..|+|+++  +| +++..|+.|++|++...  .   .....+...+..++++  |++|++++. ++.+.+|+
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            3467899999999876  55 56667899999987532  1   1223344556778888  788888875 77899999


Q ss_pred             ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCe
Q 047325          109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSK  187 (368)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~  187 (368)
                      ..........                              ....+...+.++.++|+++++++++. +..|.+|+.....
T Consensus       112 ~~~~~~~~~~------------------------------~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_         112 LEDGLPVGVV------------------------------DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             EETTEEEEEE------------------------------EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cccccceecc------------------------------cccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            8765432211                              11225667888999999998888775 4578999987643


Q ss_pred             EEEE------eecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccc-cce---eeccccccEEEEEEcCCC
Q 047325          188 CLES------VSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHS-LAQ---TLLKQECAVTALVVSSSR  255 (368)
Q Consensus       188 ~~~~------~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~---~~~~~~~~i~~~~~~~~~  255 (368)
                      ....      ..........+++++++  .+.+....+...+++........... ...   ...........+++++++
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  241 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  241 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence            2221      11234556789999998  44555677888898876443211100 000   011233456778899999


Q ss_pred             CEEEE-ecCCCcEEEEeCCCccccceeee--cc--ceEEEEEEeCCCEEEEee-CCCeEEEEecCCCc--eeeeEeee
Q 047325          256 SIVYC-GSSDGLVNFWEREKQLSHGGVLK--GH--KLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAI--HTCLSVLT  325 (368)
Q Consensus       256 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~--~~~~~~~~  325 (368)
                      ++++. +..++.+.+|++...........  ..  ...-++|+|||++|++++ .++.|++|+++..+  .+.+..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence            86655 55678899998875433322211  11  122368899999877665 56899999775433  33444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=8.3e-15  Score=121.53  Aligned_cols=235  Identities=9%  Similarity=-0.005  Sum_probs=145.8

Q ss_pred             EEeCCEEEEEe-----CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325           89 VISGEKIFTGH-----QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD  163 (368)
Q Consensus        89 ~~~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (368)
                      ..++..++...     .++.|.+||..+++.....                                  ..+....++|+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~----------------------------------~~g~~~~~a~S   55 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI----------------------------------DGGFLPNPVVA   55 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE----------------------------------EECSSCEEEEC
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE----------------------------------ECCCCCceEEc
Confidence            34577776653     4567999999887643322                                  11233468999


Q ss_pred             CCCCEEEEEe----------CCCcEEEEEccCCeEEEEeecCCC-------ceEEEEeCCCC-eEEEE--cCCCeEEEEE
Q 047325          164 QDCGLLYTAS----------WDRTFKVWRISDSKCLESVSAHDD-------AVNSVVSSSEG-LIFTG--SADGTVKVWK  223 (368)
Q Consensus       164 ~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~-~l~~~--~~dg~i~i~d  223 (368)
                      ||+++|++.+          .|+.|.+||+.+++.+..+..+..       ....++|++++ .++++  +.+..+.+|+
T Consensus        56 pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~  135 (355)
T d2bbkh_          56 DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD  135 (355)
T ss_dssp             TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeee
Confidence            9999887654          478999999999998887764432       23457899998 54444  4567899999


Q ss_pred             cCCCCCCcccccce-------------e--------------------------eccccccEEEEEEcCCCCEEEEecCC
Q 047325          224 REQHGKGTKHSLAQ-------------T--------------------------LLKQECAVTALVVSSSRSIVYCGSSD  264 (368)
Q Consensus       224 ~~~~~~~~~~~~~~-------------~--------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d  264 (368)
                      ..............             .                          ...+...+....+.+++..++.++.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T d2bbkh_         136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT  215 (355)
T ss_dssp             TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred             cCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCC
Confidence            87653210000000             0                          00011112234555666778888889


Q ss_pred             CcEEEEeCCCccccc-eeee------------ccceEEEEEEeCCCEEEEeeCC----------CeEEEEecCCCceeee
Q 047325          265 GLVNFWEREKQLSHG-GVLK------------GHKLAVLCLAAAGKLVFSGSAD----------KTICVWRRDGAIHTCL  321 (368)
Q Consensus       265 g~i~i~d~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~  321 (368)
                      +.+++|++..+.... ....            ........+++++..++....+          ..|.+||..+.  +.+
T Consensus       216 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~--~~~  293 (355)
T d2bbkh_         216 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERL  293 (355)
T ss_dssp             SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEE
T ss_pred             CeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC--cEE
Confidence            999999987654321 1111            1122346778888887766543          46999998876  555


Q ss_pred             EeeeccccCeeEEEEecCCee--eecC--CcceEEEEEeeCCc
Q 047325          322 SVLTGHTGPVKCLAVEEDRDS--SSST--SSCAQRWIVYSGSL  360 (368)
Q Consensus       322 ~~~~~h~~~v~~l~~~~~~~~--~~~~--~~~~~~w~l~sg~~  360 (368)
                      ..+. +...+.+++|+|||+.  ++++  ++.+.+|.+.+|..
T Consensus       294 ~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         294 AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            5554 4456899999999973  3333  34456665555543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=5.3e-14  Score=117.32  Aligned_cols=274  Identities=7%  Similarity=-0.062  Sum_probs=160.1

Q ss_pred             EEccCCCc--EEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCC
Q 047325           58 YTGSDSKN--IRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAG  121 (368)
Q Consensus        58 ~s~~~dg~--i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~  121 (368)
                      ++...+|+  |.+||....  +.....+..+  .++++  |+.|++.+          .|+.|.+||..+.+........
T Consensus        38 ~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p  115 (368)
T d1mdah_          38 LPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             ECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC
Confidence            34556666  445576643  3334444444  35555  77777654          4788999999988754433211


Q ss_pred             ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceE
Q 047325          122 TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVN  200 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~  200 (368)
                      .....                         ........++|+|||++++++. .++.+.+||+.+++.+..+..+.....
T Consensus       116 ~~~~~-------------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_         116 DAPRF-------------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             TSCSC-------------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             cccee-------------------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence            00000                         0112234589999999998876 579999999999999988876554321


Q ss_pred             EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-
Q 047325          201 SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-  279 (368)
Q Consensus       201 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  279 (368)
                        ...+...++..+.||.+..+++.................+...+....+.+++..+...  .+.+++++........ 
T Consensus       171 --~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~  246 (368)
T d1mdah_         171 --HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMK  246 (368)
T ss_dssp             --EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEE
T ss_pred             --ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEE
Confidence              11122266777888888888887654422222222233344444556677776555443  3455555554322110 


Q ss_pred             ------------eeeeccceEEEEEEeCCCEEEEeeCC---------CeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          280 ------------GVLKGHKLAVLCLAAAGKLVFSGSAD---------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       280 ------------~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                                  ............+++++..++....+         ..|.+||..+.  +.+..+. +...+.+++|+|
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~-~~~~~~~~a~sp  323 (368)
T d1mdah_         247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPIS-NGHDSDAIIAAQ  323 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCE-EEEEECEEEECC
T ss_pred             eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--cEeEEec-CCCceeEEEECC
Confidence                        01111222346788888877665322         35888988776  5555554 446789999999


Q ss_pred             CCee--eecC--CcceEEEEEeeCCcccccc
Q 047325          339 DRDS--SSST--SSCAQRWIVYSGSLDKSDD  365 (368)
Q Consensus       339 ~~~~--~~~~--~~~~~~w~l~sg~~D~~v~  365 (368)
                      ||+.  +++.  ++.+.+|...+|-.-++|.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            9973  2332  3556777766665544443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.51  E-value=4.1e-13  Score=111.54  Aligned_cols=252  Identities=11%  Similarity=0.091  Sum_probs=156.1

Q ss_pred             EEEEccCCCcEEEEcCCcc--eec---c---------------------------cCCCCCeeEE--EEeCCEEEEE-eC
Q 047325           56 LLYTGSDSKNIRVWKNLKE--FCG---F---------------------------KASSGLVKAI--VISGEKIFTG-HQ  100 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~--~~~---~---------------------------~~~~~~v~~~--~~~~~~l~s~-~~  100 (368)
                      .++||+.+|+|++|++...  +..   |                           ..|.......  .++|++|++. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            4778999999999996522  111   1                           0122222222  2458887655 46


Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEEEeCCC--
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDR--  176 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~--  176 (368)
                      +.+|.++|+++.+........                               +...+..++|+|+++  +++..+.+.  
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP-------------------------------~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIP-------------------------------NVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECT-------------------------------TCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             CCEEEEEECCCCcEeeEEecC-------------------------------CCCCccceEEeccCCEEEEEeccCCccc
Confidence            889999999988654333221                               456788999999888  444444332  


Q ss_pred             ---------------cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCC-----------------------
Q 047325          177 ---------------TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADG-----------------------  217 (368)
Q Consensus       177 ---------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-----------------------  217 (368)
                                     .+..+|..+.+....+... .....+.++|+| ++++++.+.                       
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             ccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence                           2355888888877777644 356788999999 665554432                       


Q ss_pred             ------------------eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCcccc
Q 047325          218 ------------------TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       218 ------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~  278 (368)
                                        .+.+++....      .....+... .....+.++|||++++ ++..+++|.+||+++....
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~------~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGES------EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSC------SSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCC------ceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence                              1222221111      122222222 3356789999999765 5778999999998753221


Q ss_pred             -------ceeeeccc-----eEEEEEEeCCCEEEEeeCCCeEEEEecCCC--------ceeeeEee-----eccccCeeE
Q 047325          279 -------GGVLKGHK-----LAVLCLAAAGKLVFSGSADKTICVWRRDGA--------IHTCLSVL-----TGHTGPVKC  333 (368)
Q Consensus       279 -------~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~-----~~h~~~v~~  333 (368)
                             .....++.     ..-..|+++|..+.+.+.|..|..|+++..        ....+..+     .+|...+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~  373 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLT  373 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccc
Confidence                   11111111     111456677888888899999999997421        11223333     578888888


Q ss_pred             EEEecCCeeeecC
Q 047325          334 LAVEEDRDSSSST  346 (368)
Q Consensus       334 l~~~~~~~~~~~~  346 (368)
                      .+++|||++|++.
T Consensus       374 ~t~~pdGk~l~s~  386 (441)
T d1qnia2         374 ESRDADGKWLVVL  386 (441)
T ss_dssp             TSTTCCCCEEEEE
T ss_pred             cccCCCCcEEEec
Confidence            9999999976665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=8e-12  Score=107.49  Aligned_cols=124  Identities=13%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             EEEEccCCCcEEEEcCCccee-------cccCCCCCeeEEEEe--CCEEEEEeC---------CCeEEEEeecCCCcccc
Q 047325           56 LLYTGSDSKNIRVWKNLKEFC-------GFKASSGLVKAIVIS--GEKIFTGHQ---------DGKIRVWKISPKNQSVH  117 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~-------~~~~~~~~v~~~~~~--~~~l~s~~~---------dg~i~vw~~~~~~~~~~  117 (368)
                      ++..  .|+.+.+||+.+...       .+..|...|.++.|+  +++|+.++.         ++.+.+||+.+++....
T Consensus        30 ~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l  107 (470)
T d2bgra1          30 YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE  107 (470)
T ss_dssp             EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS
T ss_pred             EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc
Confidence            5543  477899999875422       455677889999998  888888753         56788999998763221


Q ss_pred             ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC--
Q 047325          118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH--  195 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--  195 (368)
                      .                                 .+...+..+.|+|||+.++... ++.+.+|+..+++.......+  
T Consensus       108 ~---------------------------------~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1         108 E---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             S---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred             c---------------------------------cCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCC
Confidence            1                                 2778899999999999999865 678999999988766543221  


Q ss_pred             ----------------CCceEEEEeCCCC-eEEEEcC
Q 047325          196 ----------------DDAVNSVVSSSEG-LIFTGSA  215 (368)
Q Consensus       196 ----------------~~~v~~~~~~~~~-~l~~~~~  215 (368)
                                      .+....+.|+||| .|+....
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence                            2234567899999 6666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=1.8e-11  Score=101.71  Aligned_cols=268  Identities=8%  Similarity=0.021  Sum_probs=148.7

Q ss_pred             ccCCCceeeeccCcCCcEEEEEecCCEEEEc----------cCCCcEEEEcCCcc--eecccCC-------CCCeeEEEE
Q 047325           30 NLPQNGLIGSLVREEGHIYSLAASKDLLYTG----------SDSKNIRVWKNLKE--FCGFKAS-------SGLVKAIVI   90 (368)
Q Consensus        30 ~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~----------~~dg~i~iw~~~~~--~~~~~~~-------~~~v~~~~~   90 (368)
                      +....+++..+.++......+..++..|++.          +.|+.|++||..+.  ......+       ......++|
T Consensus        52 d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          52 CAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             ETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             eCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence            3455666676766666644444445555543          45788999998643  2222221       112235667


Q ss_pred             e--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325           91 S--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG  167 (368)
Q Consensus        91 ~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  167 (368)
                      +  |++|+++. .++.+.+||+.+++........                                ....   .......
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~--------------------------------~~~~---~~~~~~~  176 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA--------------------------------SCFH---IHPGAAA  176 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS--------------------------------SCCC---CEEEETT
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc--------------------------------Ccce---EccCCCc
Confidence            6  77887775 5799999999987643332211                                1100   0111233


Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEE------eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc-----
Q 047325          168 LLYTASWDRTFKVWRISDSKCLES------VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA-----  236 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  236 (368)
                      .+++.+.||.+.++++........      +..+...+....+.+++.++. ..++.+.+++.............     
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccce
Confidence            555566677777777654432211      122334455566777773332 23455666666543210000000     


Q ss_pred             -eeeccccccEEEEEEcCCCCEEEEecCC---------CcEEEEeCCCccccceeeeccceEEEEEEeCCC--EEEEeeC
Q 047325          237 -QTLLKQECAVTALVVSSSRSIVYCGSSD---------GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSGSA  304 (368)
Q Consensus       237 -~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~  304 (368)
                       ............++++|++..++....+         ..|.+||..+++.......++...-+.++||++  +++++..
T Consensus       256 ~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT
T ss_pred             eeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCC
Confidence             0000011223357788888877665322         358899999887664444444444478889986  3466778


Q ss_pred             CCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325          305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV  336 (368)
Q Consensus       305 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~  336 (368)
                      |+.|++||..++  +.+.++..... .+.|++
T Consensus       336 ~~~v~v~D~~tg--k~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         336 TEVLDIYDAASD--QDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             TTEEEEEESSSC--EEEEECCCCSC-CCEEEC
T ss_pred             CCeEEEEECCCC--CEEEEEECCCC-CCEEEE
Confidence            999999998887  66666654332 444444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=2e-09  Score=86.35  Aligned_cols=248  Identities=10%  Similarity=0.058  Sum_probs=160.6

Q ss_pred             ccccccccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEe
Q 047325           24 WSQFEENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGH   99 (368)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~   99 (368)
                      |.....++.+.+.+..+.... .+..+++++  +++++...+++|..|+.......+......+.+++++  |+.+++..
T Consensus         8 ~~~~~~~~~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~   86 (302)
T d2p4oa1           8 YADKPIELAPAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW   86 (302)
T ss_dssp             TTTSCBCCCCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEE
T ss_pred             cccCcccCCcccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEec
Confidence            334444555556666664322 477788764  4888989999999999877766677777889999998  77888888


Q ss_pred             CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325          100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK  179 (368)
Q Consensus       100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  179 (368)
                      .++.+..++............                             ..........+.+.++++++++-+.++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          87 NADSIPVVSLVKSDGTVETLL-----------------------------TLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             CTTSCEEEEEECTTSCEEEEE-----------------------------ECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CCceEEEEEecccccceeecc-----------------------------ccCCccccceeEEccCCCEEeeccccccce
Confidence            888888888765432111100                             001335578899999999888888889999


Q ss_pred             EEEccCCeEEEEeec----------CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325          180 VWRISDSKCLESVSA----------HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL  249 (368)
Q Consensus       180 iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (368)
                      .+|...+........          .......+.+..+..+++.+..+.|..++.........    ............+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~pdgi  213 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----PEIFVEQTNIDDF  213 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCC----CEEEEESCCCSSE
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccc----cccccCCCCCcce
Confidence            999887754433221          11235566666555777888899999999875432111    1111123345679


Q ss_pred             EEcCCCCEEEEecCCCcEEEEeCCCccccceeee-cc-ceEEEEE---EeCCCEEEEeeCC
Q 047325          250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GH-KLAVLCL---AAAGKLVFSGSAD  305 (368)
Q Consensus       250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~l~~~~~d  305 (368)
                      +++++|++.++...++.|..++............ +. ....++|   .+|++.|+.++..
T Consensus       214 a~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         214 AFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            9999999888888889999998765432211111 11 1233455   3466767665443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.30  E-value=8.9e-11  Score=97.38  Aligned_cols=251  Identities=10%  Similarity=0.036  Sum_probs=134.5

Q ss_pred             EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce-eEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325           95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY-IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS  173 (368)
Q Consensus        95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  173 (368)
                      +++++.+|.|++|++.+.+.......-..... ..  ........ +.........-..|.-........|||++|++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~-~g--~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSA-TG--WGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTT-TC--TTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCC-EE--EEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            66888999999999988876544322100000 00  00000000 0000000000112444455555678999887665


Q ss_pred             -CCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC---eEEEEcCCCe-----------------EEEEEcCCCCCCc
Q 047325          174 -WDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG---LIFTGSADGT-----------------VKVWKREQHGKGT  231 (368)
Q Consensus       174 -~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~---~l~~~~~dg~-----------------i~i~d~~~~~~~~  231 (368)
                       .++.|.++|+.+++....+.- +...+..++++|++   +++..+.+..                 +..+|..+..   
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~---  167 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD---  167 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS---
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce---
Confidence             678999999999998887763 46678999999988   3443333321                 2335554321   


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecCCC-----------------------------------------cEEEE
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----------------------------------------LVNFW  270 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~i~  270 (368)
                         ...... .......+.++|+|+++++++.+.                                         .+.++
T Consensus       168 ---v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         168 ---VAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             ---EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ---eeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence               111111 123467789999999888776542                                         22333


Q ss_pred             eCCCccccceeeeccceEEEEEEeCCCEEE-EeeCCCeEEEEecCCCce------eeeEeeeccc---cCeeEEEEecCC
Q 047325          271 EREKQLSHGGVLKGHKLAVLCLAAAGKLVF-SGSADKTICVWRRDGAIH------TCLSVLTGHT---GPVKCLAVEEDR  340 (368)
Q Consensus       271 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~------~~~~~~~~h~---~~v~~l~~~~~~  340 (368)
                      +............+....-..++|||++++ ++..+++|.+||++....      .....+.++.   -.....+|+++|
T Consensus       244 ~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g  323 (441)
T d1qnia2         244 GRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG  323 (441)
T ss_dssp             CSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             cccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence            322222221111122222377899999865 567799999999864211      0111111111   124556899998


Q ss_pred             eeeecC--CcceEEEEE
Q 047325          341 DSSSST--SSCAQRWIV  355 (368)
Q Consensus       341 ~~~~~~--~~~~~~w~l  355 (368)
                      ....+.  ++.+..|.+
T Consensus       324 ~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEEEEETTTTEEEEEEH
T ss_pred             eEEEcccccceEEEecc
Confidence            744332  334444543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=2.2e-08  Score=78.23  Aligned_cols=227  Identities=7%  Similarity=-0.011  Sum_probs=133.7

Q ss_pred             EEEEEecCC---EEEEccCCCcEEEEcCCcceeccc--CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325           47 IYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFK--ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR  119 (368)
Q Consensus        47 i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~  119 (368)
                      -..++++++   +++..+..+.+..++.........  .-......++++  ++.+++....+.+++++-.+....... 
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~-   94 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF-   94 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC-
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee-
Confidence            467788744   444556678888887654322211  112234566776  555555555555555443332211110 


Q ss_pred             CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325          120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV  199 (368)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  199 (368)
                                                      .......++++.++++++++-..+..+..++.................
T Consensus        95 --------------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          95 --------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             --------------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             --------------------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence                                            023456789999999887776666777777765543322222223445


Q ss_pred             EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325          200 NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH  278 (368)
Q Consensus       200 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  278 (368)
                      ..+++.+++ .+++...++.|..+|.+....      .......-.....+++.++++++++....+.|..++.......
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~------~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  216 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred             ceeeecCCCCEeeecccccccccccccccee------eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE
Confidence            788999988 667777788999999875421      1111233345688999999999888888888998887644322


Q ss_pred             ceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325          279 GGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWR  312 (368)
Q Consensus       279 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~  312 (368)
                      .....+ ....-+++++++.++++-..+++|+.++
T Consensus       217 ~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         217 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            111111 1223466666787777766677776654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.4e-08  Score=79.43  Aligned_cols=190  Identities=9%  Similarity=0.040  Sum_probs=119.3

Q ss_pred             EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      ...++++++++++++....+.+++++..+...+..... .....++++.+++ ++++-..+..+..++......      
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~------  131 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ------  131 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC------
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee------
Confidence            45788999998777766666666666555554433332 3456889999988 555555666777777654311      


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWRRD  314 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  314 (368)
                      .............+++.++++++++...++.|..+|.+........... ....-+++.++++++++....+.|..++.+
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            1111111234567899999999888888899999998754332211111 112235666788888888888899888765


Q ss_pred             CCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      ..... + .....-.....|+++++|.+..+..+..+++.+
T Consensus       212 ~~~~~-~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         212 STTST-V-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CSCCE-E-CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CCeEE-E-EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            44211 1 112233457899999999865554555555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=7.3e-08  Score=79.18  Aligned_cols=148  Identities=9%  Similarity=0.063  Sum_probs=88.2

Q ss_pred             CceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325          197 DAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE  273 (368)
Q Consensus       197 ~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  273 (368)
                      ..+.++.++|+| +++++. ....|.+|+........... ...........+.++|+|+++++.+.. .++.|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc-ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            457899999999 555554 45688998876543211111 111122346789999999999886544 67889999987


Q ss_pred             Cccccceee-e-----------------c--cceEEEEEEeCCCEEEEeeC------CCeEEEEecCCCcee----eeEe
Q 047325          274 KQLSHGGVL-K-----------------G--HKLAVLCLAAAGKLVFSGSA------DKTICVWRRDGAIHT----CLSV  323 (368)
Q Consensus       274 ~~~~~~~~~-~-----------------~--~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~----~~~~  323 (368)
                      ......... .                 .  .....+.++|+|++|+++..      .+.|..|++......    .+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            543221100 0                 0  01234678899999988742      234777877543111    1111


Q ss_pred             eeccccCeeEEEEec-CCeeeec
Q 047325          324 LTGHTGPVKCLAVEE-DRDSSSS  345 (368)
Q Consensus       324 ~~~h~~~v~~l~~~~-~~~~~~~  345 (368)
                      .........+++++| +|+++..
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~v  326 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEE
Confidence            122334578899998 7885443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.13  E-value=6.7e-08  Score=77.54  Aligned_cols=190  Identities=10%  Similarity=0.088  Sum_probs=115.3

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC----CceEEEEeCCCCeEEEEcC----------------
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD----DAVNSVVSSSEGLIFTGSA----------------  215 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~~----------------  215 (368)
                      .-..+.+.++++.++++...+.|...|...+..........    ...+.+++.++|.|..+..                
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            35689999999988888877789999976554332222111    1357789999994444322                


Q ss_pred             CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-----EEEEecCCCcEEEEeCCCccccce-----eeec-
Q 047325          216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-----IVYCGSSDGLVNFWEREKQLSHGG-----VLKG-  284 (368)
Q Consensus       216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~-  284 (368)
                      +|.|..++...  .      .......-...+.++|+|+++     +.++-+..+.|..||+........     .... 
T Consensus       152 ~G~v~~~~~dg--~------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  223 (314)
T d1pjxa_         152 FGSIYCFTTDG--Q------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             CEEEEEECTTS--C------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             CceEEEEeecC--c------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc
Confidence            23344443321  1      111122223356788988764     455567788899998763322111     1111 


Q ss_pred             cc--eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecCCcceEEEEE
Q 047325          285 HK--LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSSTSSCAQRWIV  355 (368)
Q Consensus       285 ~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~~~w~l  355 (368)
                      ..  ..-+++..+|++.++....+.|.+||.+..  ..+..+......+++++|.|+++ +..+....+.+|.+
T Consensus       224 ~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g--~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC--EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            11  112566678998888888899999987665  44455555567789999999986 33444445555554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.7e-07  Score=73.40  Aligned_cols=230  Identities=14%  Similarity=0.045  Sum_probs=132.1

Q ss_pred             cEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCC---eEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325           65 NIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDG---KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN  138 (368)
Q Consensus        65 ~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (368)
                      .|.|-|.. .....+..+...+..-+|+  |+.|+-.....   .+.+.+...+...                       
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-----------------------   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------   76 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------------
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-----------------------
Confidence            45555554 2333444456667788888  88887654432   3444444443321                       


Q ss_pred             eeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcE--EEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEE
Q 047325          139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTF--KVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTG  213 (368)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i--~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~  213 (368)
                                .+..+........|+|+++.++.... ++..  ..+........... ..........+++++  .+++.
T Consensus        77 ----------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (269)
T d2hqsa1          77 ----------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTS  145 (269)
T ss_dssp             ----------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----------EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecc
Confidence                      12226677888999999998877654 3332  23333333333322 233333444566665  56666


Q ss_pred             cCCCeE--EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccceE
Q 047325          214 SADGTV--KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLA  288 (368)
Q Consensus       214 ~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  288 (368)
                      ..++..  ...++...       ................|+|+++.++..+.++   .+.+.+....... .........
T Consensus       146 ~~~g~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~  217 (269)
T d2hqsa1         146 DQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDE  217 (269)
T ss_dssp             CTTSSCEEEEEETTSS-------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCE
T ss_pred             cccCCceEeeeecccc-------cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-EeecCcccc
Confidence            666654  44454433       2233344556677889999999888765544   3444555443322 222233344


Q ss_pred             EEEEEeCCCEEEEeeC---CCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          289 VLCLAAAGKLVFSGSA---DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ...++|||+.|+-.+.   ...|++++++...   ...+....+.+...+|+|-
T Consensus       218 ~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         218 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCC
T ss_pred             ceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEEeCCCCcEEeEEeCCC
Confidence            5679999998875443   3468888887753   2344455667888899983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=1.9e-08  Score=80.55  Aligned_cols=196  Identities=11%  Similarity=0.012  Sum_probs=127.9

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ..+..+++.|||+++++...++.|..+|... + ...+......+.++++.++| ++++...++.+..++...... .  
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-~--  102 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-T--  102 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-C--
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-c--
Confidence            3577899999999999988899999998653 3 23344566788999999999 677777788888888754321 0  


Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee---------ccceEEEEEEeCCC-EEEEee
Q 047325          234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---------GHKLAVLCLAAAGK-LVFSGS  303 (368)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~l~~~~  303 (368)
                      ...............+++.++++++++.+.++.+..+|...+........         ........+++++. ++++.+
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~  182 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT  182 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET
T ss_pred             eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecC
Confidence            01111122345578999999999999988889898888775432211111         11122344556555 445556


Q ss_pred             CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325          304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV  355 (368)
Q Consensus       304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l  355 (368)
                      ..+.|..++.....................++++++|.+.++.....+++.+
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEE
Confidence            7888888887654222222222234456789999999876666555555554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=5.5e-10  Score=95.77  Aligned_cols=143  Identities=10%  Similarity=0.059  Sum_probs=104.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCC-eEEEEc---------CCCeEEEEE
Q 047325          159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEG-LIFTGS---------ADGTVKVWK  223 (368)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~~~~---------~dg~i~i~d  223 (368)
                      .+.|.+++.++..  .|+.|.+||+.+++....+..     +...|.++.|+||+ +|+.++         .++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4778898877653  578899999999987765543     45679999999999 666663         357889999


Q ss_pred             cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc------------------
Q 047325          224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH------------------  285 (368)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------  285 (368)
                      +..+       ....+..+...+....|+|||+.+|.. .++.+++|+..++........+.                  
T Consensus        99 ~~~~-------~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~  170 (470)
T d2bgra1          99 LNKR-------QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (470)
T ss_dssp             TTTT-------EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             CCCC-------cccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeec
Confidence            9865       244566778889999999999999986 56789999988765432221111                  


Q ss_pred             -ceEEEEEEeCCCEEEEeeCCCe-EEEE
Q 047325          286 -KLAVLCLAAAGKLVFSGSADKT-ICVW  311 (368)
Q Consensus       286 -~~~~~~~~~~~~~l~~~~~dg~-i~iw  311 (368)
                       ......++|||+.|+....|.+ +..|
T Consensus       171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         171 SAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             CCccccEECCCCCccceeEecCCcCceE
Confidence             1123568999999998865533 4433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=2.1e-07  Score=72.82  Aligned_cols=187  Identities=10%  Similarity=0.037  Sum_probs=107.0

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQH  227 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~  227 (368)
                      +...+..-+|+|||+.||-.....   .+.+.+...+... .+..+........|+|++ .++ ....++...++.....
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            667788999999999998765433   4667777665544 444567778889999999 444 3334444433333222


Q ss_pred             CCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCc--EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC
Q 047325          228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGL--VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      ..     ................++++++.++. ...+|.  |...++............-......++++++.++..+.
T Consensus       116 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         116 SG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             TC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cc-----cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            11     12222233334445566776665444 444554  55555555433222221222233567788888776654


Q ss_pred             -CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325          305 -DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS  347 (368)
Q Consensus       305 -dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  347 (368)
                       .+...+|..+......  ....+........|+|||+.|+..+
T Consensus       191 ~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             cCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEE
Confidence             4455555544332222  2333556677889999999887543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=2.4e-06  Score=67.10  Aligned_cols=227  Identities=13%  Similarity=0.173  Sum_probs=139.8

Q ss_pred             EEEEEecC--CEEEEccCCCcEEEEcCCccee-ccc------CCCCCeeEEEEe---CCEEEEE-eCCCeEEEEeecCCC
Q 047325           47 IYSLAASK--DLLYTGSDSKNIRVWKNLKEFC-GFK------ASSGLVKAIVIS---GEKIFTG-HQDGKIRVWKISPKN  113 (368)
Q Consensus        47 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-~~~------~~~~~v~~~~~~---~~~l~s~-~~dg~i~vw~~~~~~  113 (368)
                      -..+++++  +++++-..++.|++||...... .+.      .....-..+.+.   +..+++. +.++.|..++.....
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~  104 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF  104 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccccc
Confidence            46777764  4667667778899999764322 221      111123344443   3344333 344566666543221


Q ss_pred             ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325          114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS  193 (368)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (368)
                       ......                               ........+++.+++.++++....+.+.+++. .++.+..+.
T Consensus       105 -~~~~~~-------------------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g  151 (279)
T d1q7fa_         105 -VRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG  151 (279)
T ss_dssp             -EEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred             -eeecCC-------------------------------CcccccceeccccCCcEEEEeeccceeeEecc-CCceeeccc
Confidence             111100                               03345678999999988888777788888885 566666653


Q ss_pred             --cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcCCCCEEEEecC-CCcE
Q 047325          194 --AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSSSRSIVYCGSS-DGLV  267 (368)
Q Consensus       194 --~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i  267 (368)
                        .+......+++.+++ .+++....+.|++||....       ....+  .+.......+++.++++++++-.. ++.|
T Consensus       152 ~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v  224 (279)
T d1q7fa_         152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  224 (279)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             ccccccccceeeeccceeEEeeeccccceeeeecCCc-------eeeeecccccccCCcccccccCCeEEEEECCCCcEE
Confidence              345567888999988 7777778899999997632       22222  233445788999999998777543 4579


Q ss_pred             EEEeCCCccccceee---eccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325          268 NFWEREKQLSHGGVL---KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG  315 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  315 (368)
                      .+|+... +......   ......-+++.++|.+++ ++.++.|++|+...
T Consensus       225 ~~f~~~G-~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         225 TIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             EEECCCC-CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            9998653 3221111   112334467888887555 56789999997754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=8.5e-07  Score=69.75  Aligned_cols=173  Identities=13%  Similarity=0.215  Sum_probs=109.0

Q ss_pred             eEEEEcCCCC-EEEEE-eCCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325          158 SCMSLDQDCG-LLYTA-SWDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH  233 (368)
Q Consensus       158 ~~~~~~~~~~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  233 (368)
                      ..+++.++.. .+++. +.++.|..++. .++....+.. .......++..+++ .+++....+.+.+++....      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~------  145 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------  145 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------
T ss_pred             ccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc------
Confidence            3455555433 34333 34457777775 5666665542 34556788998888 6666667778888876532      


Q ss_pred             ccceee--ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee-eccc--eEEEEEEeCCCEEEEeeC-CCe
Q 047325          234 SLAQTL--LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KGHK--LAVLCLAAAGKLVFSGSA-DKT  307 (368)
Q Consensus       234 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~-dg~  307 (368)
                       ....+  ..+......+++.++++.+++....+.|++||....... ..- .+..  ..-+++.++|+++++-.. ++.
T Consensus       146 -~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~-~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~  223 (279)
T d1q7fa_         146 -VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSNGEILIADNHNNFN  223 (279)
T ss_dssp             -EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             -eeecccccccccccceeeeccceeEEeeeccccceeeeecCCceee-eecccccccCCcccccccCCeEEEEECCCCcE
Confidence             22222  334566788999999999999999999999997653221 111 1111  223567778987777543 557


Q ss_pred             EEEEecCCCceeeeEeeec--cccCeeEEEEecCCee
Q 047325          308 ICVWRRDGAIHTCLSVLTG--HTGPVKCLAVEEDRDS  342 (368)
Q Consensus       308 i~iw~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~  342 (368)
                      |.+|+.+.   +.+..+..  .......|++.|+|.+
T Consensus       224 v~~f~~~G---~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         224 LTIFTQDG---QLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEECTTS---CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EEEECCCC---CEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            99997543   44444432  2345789999999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.9e-06  Score=69.11  Aligned_cols=217  Identities=10%  Similarity=0.119  Sum_probs=128.2

Q ss_pred             eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325           85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL  162 (368)
Q Consensus        85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (368)
                      +..++|+  |+..++-..++.|..|+.+++......                                .........+++
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~--------------------------------~~~~~~p~gla~   89 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------VSHKANPAAIKI   89 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------------------ECSSSSEEEEEE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE--------------------------------eCCCCCeeEEEE
Confidence            4566776  555555556777777776654321111                                113345678999


Q ss_pred             cCCCCEEEEEeC----CCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCCeEEEEcCC-------CeEEEEEcCCCCC
Q 047325          163 DQDCGLLYTASW----DRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEGLIFTGSAD-------GTVKVWKREQHGK  229 (368)
Q Consensus       163 ~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~  229 (368)
                      .++|+++++...    .+.+...+...+........  .....+.+++.++|.++.+...       +.+..++....  
T Consensus        90 ~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--  167 (319)
T d2dg1a1          90 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--  167 (319)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--
T ss_pred             CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--
Confidence            999987776543    23455556555544333322  2345778899999955544332       23444444321  


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEE-EEecCCCcEEEEeCCCcccccee--------eeccceE-EEEEEeCCCEE
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIV-YCGSSDGLVNFWEREKQLSHGGV--------LKGHKLA-VLCLAAAGKLV  299 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~l  299 (368)
                           ........-...+.++|+|+++.| ++-+..+.|+.|++.........        ......+ -+++..+|++.
T Consensus       168 -----~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~  242 (319)
T d2dg1a1         168 -----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  242 (319)
T ss_dssp             -----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             -----eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence                 122222223346789999999866 45566789999997643211111        1111112 26677789988


Q ss_pred             EEeeCCCeEEEEecCCCceeeeEeee------ccccCeeEEEEecCCeee
Q 047325          300 FSGSADKTICVWRRDGAIHTCLSVLT------GHTGPVKCLAVEEDRDSS  343 (368)
Q Consensus       300 ~~~~~dg~i~iw~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~  343 (368)
                      ++....+.|.+|+-+.   +.+.++.      ++...+++++|.+++..+
T Consensus       243 Va~~~~g~V~~~~p~G---~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~  289 (319)
T d2dg1a1         243 VAMYGQGRVLVFNKRG---YPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  289 (319)
T ss_dssp             EEEETTTEEEEECTTS---CEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             EEEcCCCEEEEECCCC---cEEEEEeCCCcCCCcCceeeeEEEeCCCCEE
Confidence            8888899999998543   4444443      334468899999887644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=9.3e-06  Score=64.74  Aligned_cols=224  Identities=8%  Similarity=0.045  Sum_probs=129.5

Q ss_pred             CCcEEEEcCCcceecc-c-----CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccC
Q 047325           63 SKNIRVWKNLKEFCGF-K-----ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI  134 (368)
Q Consensus        63 dg~i~iw~~~~~~~~~-~-----~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (368)
                      +|+|..||..+..... .     ...+.-..+.++  ++.++++...+.|...+.+..............          
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~----------  114 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGR----------  114 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSC----------
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecccccc----------
Confidence            4678888876543221 1     112234578887  667888887777888887654322211110000          


Q ss_pred             CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC---------------CCcEEEEEccCCeEEEEeecCCCce
Q 047325          135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW---------------DRTFKVWRISDSKCLESVSAHDDAV  199 (368)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~v  199 (368)
                                        .-...+.+++.++|++.++-..               .|.|..++. .++...... .-...
T Consensus       115 ------------------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~p  174 (314)
T d1pjxa_         115 ------------------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFP  174 (314)
T ss_dssp             ------------------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSE
T ss_pred             ------------------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Cccee
Confidence                              1123567889999887776432               234444443 333333222 22334


Q ss_pred             EEEEeCCCC------eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          200 NSVVSSSEG------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       200 ~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      +.++|++++      ++++-+..+.|..||+..............+.. .......+++.++|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            677887653      344556788999999865432111111111111 2234678999999998888878899999998


Q ss_pred             CCccccceeee-ccceEEEEEEeCCC-EEEEeeCCCeEEEEecCCC
Q 047325          273 EKQLSHGGVLK-GHKLAVLCLAAAGK-LVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       273 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~  316 (368)
                      +.+........ ......++|.++++ ++++.+.+|.|...++...
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            86654422222 22334466777776 5566677888888877543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.80  E-value=2.2e-06  Score=70.20  Aligned_cols=193  Identities=9%  Similarity=0.131  Sum_probs=110.2

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-CeEEEEe-ecCCCceEEEEeCCCC-e--EEEEc-CCCeEEEEEcCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-SKCLESV-SAHDDAVNSVVSSSEG-L--IFTGS-ADGTVKVWKREQ  226 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~-~--l~~~~-~dg~i~i~d~~~  226 (368)
                      ....+..|+++|++++|+++.. +.+..|.+.. +...... .........+.+++++ .  ++++. ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445667999999999988875 5678887653 3332221 1223344567788888 2  33322 245555554432


Q ss_pred             CCCC-----------cccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCccccc--eee----eccceE
Q 047325          227 HGKG-----------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHG--GVL----KGHKLA  288 (368)
Q Consensus       227 ~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--~~~----~~~~~~  288 (368)
                      ....           ...............+.++.|+|+++++++++. ...|.+|+........  ...    .+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            2110           000000111112234789999999998887754 4578888765322111  111    122333


Q ss_pred             EEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeee-----------------ccccCeeEEEEecCCeeeecC
Q 047325          289 VLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLT-----------------GHTGPVKCLAVEEDRDSSSST  346 (368)
Q Consensus       289 ~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-----------------~h~~~v~~l~~~~~~~~~~~~  346 (368)
                      -..++|+++++++.. .+++|.+|+++......+....                 .+......+.++|+|+++.++
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            477889999886655 5889999998765433332221                 112235689999999987655

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.78  E-value=1.2e-05  Score=63.44  Aligned_cols=189  Identities=9%  Similarity=0.017  Sum_probs=120.8

Q ss_pred             EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccC
Q 047325           56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI  134 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (368)
                      +..+--..+.|.-||..+.....-.....+.++++. ...|+.++.+ .+..+|..+++..........           
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~-----------   99 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESD-----------   99 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTT-----------
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecC-----------
Confidence            444544567788888775544333344567888886 5566666665 577889887764322111100           


Q ss_pred             CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC----CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--
Q 047325          135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW----DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--  208 (368)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--  208 (368)
                                       .....++.+.+.|+|++.++...    .+.-.+|.+..++....... -...+.+++++++  
T Consensus       100 -----------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1         100 -----------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTT  161 (295)
T ss_dssp             -----------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCE
T ss_pred             -----------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCce
Confidence                             02235788899999987666542    23456777777776555543 2345789999998  


Q ss_pred             eEEEEcCCCeEEEEEcCCCCCCc--ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325          209 LIFTGSADGTVKVWKREQHGKGT--KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK  274 (368)
Q Consensus       209 ~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  274 (368)
                      .+++-+..+.|..+++.......  ............+....+++..+|++.++.-..+.|..||.+.
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            56677778999999886432211  1111122334456688899999999888777788999999654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.68  E-value=2e-05  Score=63.01  Aligned_cols=194  Identities=7%  Similarity=0.039  Sum_probs=112.8

Q ss_pred             CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEc-C----CCeEEEEEcCCCCC
Q 047325          155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS-A----DGTVKVWKREQHGK  229 (368)
Q Consensus       155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~----dg~i~i~d~~~~~~  229 (368)
                      ..+..++|.++|++.++-..++.|..||...++....+.........+++.++|.|+++. .    .+.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345689999999977777788999999988777666665566678899999999444332 2    23344444443211


Q ss_pred             CcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEE-Ee
Q 047325          230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF-SG  302 (368)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~  302 (368)
                          ...............+++.++|++.++...      .+.+..++.................-++++++++.|+ +-
T Consensus       120 ----~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 ----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             ----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ----eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence                011111122345778999999987666432      2335555554332211111111223367888888654 44


Q ss_pred             eCCCeEEEEecCCCc--eeeeE----eeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325          303 SADKTICVWRRDGAI--HTCLS----VLTGHTGPVKCLAVEEDRDSSSSTSSCAQR  352 (368)
Q Consensus       303 ~~dg~i~iw~~~~~~--~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  352 (368)
                      +..+.|..|+++...  .....    ...........|++.++|.+.++..+..++
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEE
Confidence            668899999886431  11111    111112235678999998865554444444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.3e-06  Score=70.65  Aligned_cols=252  Identities=10%  Similarity=0.046  Sum_probs=129.8

Q ss_pred             cCCCcEEEEcCCccee--cc---cCCCCCeeEEEEe--CCEEEEEe---------CCCeEEEEeecCCCccccccCCccc
Q 047325           61 SDSKNIRVWKNLKEFC--GF---KASSGLVKAIVIS--GEKIFTGH---------QDGKIRVWKISPKNQSVHKRAGTLP  124 (368)
Q Consensus        61 ~~dg~i~iw~~~~~~~--~~---~~~~~~v~~~~~~--~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~  124 (368)
                      ..+|.|.+||+.....  .+   ....-.+....++  +++++...         ..+.+.++|+.++..........  
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~--  111 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV--  111 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC--
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC--
Confidence            4567788888763321  11   1122345555565  67776653         35678889988776432211110  


Q ss_pred             cceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-CCCc-----
Q 047325          125 TLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-HDDA-----  198 (368)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~-----  198 (368)
                                                  ....+....|+|||+.||-.. ++.|.+.+..++..++.... ....     
T Consensus       112 ----------------------------~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~  162 (465)
T d1xfda1         112 ----------------------------SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (465)
T ss_dssp             ----------------------------CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             ----------------------------CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccc
Confidence                                        223455678999999988776 57899998877765544321 1111     


Q ss_pred             ------------eEEEEeCCCC-eEEEEc-CCCeEEEE---------------------------------EcCCCCCCc
Q 047325          199 ------------VNSVVSSSEG-LIFTGS-ADGTVKVW---------------------------------KREQHGKGT  231 (368)
Q Consensus       199 ------------v~~~~~~~~~-~l~~~~-~dg~i~i~---------------------------------d~~~~~~~~  231 (368)
                                  -.++.|+||| .|+... .+..+..+                                 |+.......
T Consensus       163 ~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~  242 (465)
T d1xfda1         163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (465)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEE
Confidence                        2467799999 666543 23333333                                 332221100


Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEecC-C---CcEEEEeCCCccccceeeeccc------eEEEEEEeCCCEEE-
Q 047325          232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-D---GLVNFWEREKQLSHGGVLKGHK------LAVLCLAAAGKLVF-  300 (368)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~-  300 (368)
                      .............-+..+.|+|++++++.... +   ..+.++|..++...........      .....++++|+.++ 
T Consensus       243 ~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~f  322 (465)
T d1xfda1         243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (465)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             EEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEE
Confidence            00000011112234678899999886655322 2   2577888887654432222111      12245677777432 


Q ss_pred             --EeeCCC--eEEEEecC----CCceeeeEeeeccccCeeEE-EEecCCeee
Q 047325          301 --SGSADK--TICVWRRD----GAIHTCLSVLTGHTGPVKCL-AVEEDRDSS  343 (368)
Q Consensus       301 --~~~~dg--~i~iw~~~----~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~  343 (368)
                        ..-.+|  .++...+.    ......+..+....-.|+.+ .|++++..+
T Consensus       323 i~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v  374 (465)
T d1xfda1         323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI  374 (465)
T ss_dssp             EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred             EEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEE
Confidence              222233  23333221    11122233343334446665 688877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=8.5e-05  Score=58.43  Aligned_cols=176  Identities=13%  Similarity=0.089  Sum_probs=108.0

Q ss_pred             CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec----CCCceEEEEeCCCCeEEEEcC-----CCeEEEEEc
Q 047325          154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA----HDDAVNSVVSSSEGLIFTGSA-----DGTVKVWKR  224 (368)
Q Consensus       154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-----dg~i~i~d~  224 (368)
                      ...+.++++.+++.++++ +.+ .|.++|..+++.......    ....++.+.+.++|.+..++.     .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            456788998888866654 554 599999998876543321    123578889999995544432     233455555


Q ss_pred             CCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCcccc----cee-e--eccceE--EEEEEe
Q 047325          225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLSH----GGV-L--KGHKLA--VLCLAA  294 (368)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~----~~~-~--~~~~~~--~~~~~~  294 (368)
                      ..+       ........-...+.++|+++++.++ +-+..+.|..|++......    ... .  .+....  -+++..
T Consensus       136 ~~g-------~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         136 AKG-------KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             ETT-------EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             cCC-------cEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            433       1122222334467899999998654 5566788998887532111    011 1  111122  245566


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCe
Q 047325          295 AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRD  341 (368)
Q Consensus       295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~  341 (368)
                      +|++.++.-..+.|..||.+.   +.+..+.--...+++++|- ++..
T Consensus       209 ~GnlWva~~~~g~V~~~dp~G---~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYDTDG---NHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             TSCEEEEEETTTEEEEECTTC---CEEEEEECSCSBEEEEEEESTTSC
T ss_pred             CCCEEeeeeCCCceEEecCCC---cEeeEecCCCCceEEEEEeCCCCC
Confidence            788887777788999998543   4555665445679999996 5554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.9e-05  Score=66.65  Aligned_cols=130  Identities=9%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe----
Q 047325           98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS----  173 (368)
Q Consensus        98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  173 (368)
                      -..+|.|.+||+.+++..........                             ....+....++||+++++...    
T Consensus        33 ~~~~g~i~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~~~~~SpD~~~vl~~~~~~~   83 (465)
T d1xfda1          33 REQKGTVRLWNVETNTSTVLIEGKKI-----------------------------ESLRAIRYEISPDREYALFSYNVEP   83 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTT-----------------------------TTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             EeCCCcEEEEECCCCCEEEEEcCccc-----------------------------cccccceeEECCCCCeEEEEEcccc
Confidence            35678899999987764322211110                             223456778999999887764    


Q ss_pred             -----CCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc--
Q 047325          174 -----WDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE--  243 (368)
Q Consensus       174 -----~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--  243 (368)
                           ..+.+.++|+.+++......  .....+....|+|+| .++-. .++.|.+.+......     ......+..  
T Consensus        84 ~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~-----~~lt~~g~~~~  157 (465)
T d1xfda1          84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQA-----IRVVSTGKEGV  157 (465)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCC-----EEEECCCBTTT
T ss_pred             eeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCce-----EEEecccCcce
Confidence                 35678999998876543322  234456668899999 55544 366788888765422     001111111  


Q ss_pred             ---------------ccEEEEEEcCCCCEEEEec
Q 047325          244 ---------------CAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       244 ---------------~~i~~~~~~~~~~~l~~~~  262 (368)
                                     ..-.++.|||||++||...
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             eeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence                           1124678999999998864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.91  E-value=0.0024  Score=49.08  Aligned_cols=231  Identities=8%  Similarity=-0.011  Sum_probs=114.3

Q ss_pred             EEec--CCEEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeC-CC-----eEEEEeecCCCccccc
Q 047325           50 LAAS--KDLLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQ-DG-----KIRVWKISPKNQSVHK  118 (368)
Q Consensus        50 ~~~~--~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg-----~i~vw~~~~~~~~~~~  118 (368)
                      ++++  |+.+|-.+ +|.|.+.|+.. ....+..+.+.+....|+  |+.|+.... ++     .|.+++..+++.....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            3445  77555443 45677778874 344566677778888888  777775432 22     3566666655433221


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC------CcEEEEEccCCeEEEEe
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD------RTFKVWRISDSKCLESV  192 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~  192 (368)
                      ....                          .............|+|+++.|+.....      ..+...+...+......
T Consensus        85 ~~~~--------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (281)
T d1k32a2          85 YFSG--------------------------KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN  138 (281)
T ss_dssp             CCCE--------------------------EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC
T ss_pred             ecCC--------------------------CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec
Confidence            1110                          000022234678899999988876432      23455565555443322


Q ss_pred             ecCCCceEEEEeCCCC-eEEEEcCCC-----------eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          193 SAHDDAVNSVVSSSEG-LIFTGSADG-----------TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       193 ~~~~~~v~~~~~~~~~-~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                         ........+.+++ .++....+.           ..........       ................+.++. .+..
T Consensus       139 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~  207 (281)
T d1k32a2         139 ---LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-------AFKKIVDMSTHVSSPVIVGHR-IYFI  207 (281)
T ss_dssp             ---SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-------EEEEEECCSSCCEEEEEETTE-EEEE
T ss_pred             ---CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc-------ceeeccCCccccceeeeeccc-ccee
Confidence               1222222333333 222222111           0111111100       011111122223333444432 2333


Q ss_pred             ecC--CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325          261 GSS--DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTC  320 (368)
Q Consensus       261 ~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  320 (368)
                      ...  ...|.++|+.+.... .........+..++|||+.|+.. .++.|+++|+++++.+.
T Consensus       208 ~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         208 TDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             ECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cccccccceEEEeCCCCceE-EeecCCCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            333  335777888765433 22222334566799999987763 46889999988774443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.90  E-value=0.0037  Score=50.75  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             EEEEcCCccee----c-ccCCCCCeeEEEEe--CCEEEEEeCC-CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325           66 IRVWKNLKEFC----G-FKASSGLVKAIVIS--GEKIFTGHQD-GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS  137 (368)
Q Consensus        66 i~iw~~~~~~~----~-~~~~~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      +.+||..+..-    . ...+.....+..+.  +..++.|+.+ ..+.+||..+..-.......                
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~----------------  117 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ----------------  117 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS----------------
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc----------------
Confidence            67899874321    1 12233333344444  6677777654 57999998776432211110                


Q ss_pred             ceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC------CcEEEEEccCCe
Q 047325          138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD------RTFKVWRISDSK  187 (368)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  187 (368)
                                     ....-...+..+|++.++.++.+      ..+.+||+.+.+
T Consensus       118 ---------------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         118 ---------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             ---------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ---------------ccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence                           11122356677889988888753      368999998765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.83  E-value=0.0035  Score=48.13  Aligned_cols=92  Identities=7%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             EEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325           88 IVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD  165 (368)
Q Consensus        88 ~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  165 (368)
                      +..+  |+.++-.+ +|.|.+.|+.+++...                                 +..+...+...+|+||
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~---------------------------------Lt~~~~~~~~p~~SPD   51 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK---------------------------------IVSNLGVINNARFFPD   51 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEE---------------------------------EECSSSEEEEEEECTT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEE---------------------------------EecCCCcccCEEECCC
Confidence            3445  88877665 4678888888765322                                 2225567788999999


Q ss_pred             CCEEEEEeC-C-----CcEEEEEccCCeEEEEeec------CCCceEEEEeCCCC-eEEEE
Q 047325          166 CGLLYTASW-D-----RTFKVWRISDSKCLESVSA------HDDAVNSVVSSSEG-LIFTG  213 (368)
Q Consensus       166 ~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~l~~~  213 (368)
                      |+.|+-... +     ..|.+++..+++.......      .........|+|++ .|+..
T Consensus        52 G~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          52 GRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             SSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            998876542 2     2477888877776543221      12345677899999 55543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.65  E-value=0.014  Score=49.99  Aligned_cols=75  Identities=9%  Similarity=-0.033  Sum_probs=42.4

Q ss_pred             cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc-CeeEEEEecCCee
Q 047325          266 LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG-PVKCLAVEEDRDS  342 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~  342 (368)
                      .|.-+|+.+++............--.++..+.++++|+.||.++.+|.+++  +.+.++.-... .-.-+.|..||+.
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tG--e~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG--KELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCC--cEEEEEECCCCceecceEEEECCEE
Confidence            455556565554433332222111123445778889999999999998887  66666542211 1112556667763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.25  E-value=0.0089  Score=48.08  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEEEeecCC---------------------------------C------c--eEEEEeCC
Q 047325          168 LLYTASWDRTFKVWRISDSKCLESVSAHD---------------------------------D------A--VNSVVSSS  206 (368)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------~------~--v~~~~~~~  206 (368)
                      .|.+|+..|.|+++-+.+++.+..+.-..                                 +      .  =..+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            46788899999999999988877664110                                 0      0  01223322


Q ss_pred             ---CC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc--CCCCEEEEecCCC--------------
Q 047325          207 ---EG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS--SSRSIVYCGSSDG--------------  265 (368)
Q Consensus       207 ---~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg--------------  265 (368)
                         || +++ .-..+.+|.+-|++....    ..+... .....+..++..  |+..++++++.+.              
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt----~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKC----DAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEE----EEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             CccceeEEEEEcCCCceEEEEECcceee----eEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence               45 444 445688999999986521    011122 333455666654  4556888776633              


Q ss_pred             ----cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC
Q 047325          266 ----LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD  305 (368)
Q Consensus       266 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  305 (368)
                          .+.+.|..+.+.......+....-..++++|+++++.+.+
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             hcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence                2567788776655444444444457888999998887643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.24  E-value=0.033  Score=44.79  Aligned_cols=233  Identities=14%  Similarity=0.143  Sum_probs=106.4

Q ss_pred             EecCCEEEEccCC-CcEEEEcCCccee----cccCCCCCeeEEEE-eCCEEEEEeCC------CeEEEEeecCCCccccc
Q 047325           51 AASKDLLYTGSDS-KNIRVWKNLKEFC----GFKASSGLVKAIVI-SGEKIFTGHQD------GKIRVWKISPKNQSVHK  118 (368)
Q Consensus        51 ~~~~~~l~s~~~d-g~i~iw~~~~~~~----~~~~~~~~v~~~~~-~~~~l~s~~~d------g~i~vw~~~~~~~~~~~  118 (368)
                      ..++.+++.|+.+ ..+.+||..+...    ..........+... ++..++.|+.+      ..+.+||..+..-....
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            3456688887665 5899999764422    12222222233333 37777777643      35888988776421111


Q ss_pred             cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee--cC-
Q 047325          119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS--AH-  195 (368)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-  195 (368)
                      ...........               ... ..  ....-..+...++++.+..++.++.+.++|..+........  .. 
T Consensus       164 ~~~~~~~~~~~---------------~~~-~~--~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (387)
T d1k3ia3         164 NAKVNPMLTAD---------------KQG-LY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR  225 (387)
T ss_dssp             TSCSGGGCCCC---------------TTG-GG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred             CCccccccccc---------------ccc-ee--eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCc
Confidence            10000000000               000 00  00001112233467777777777777888877665432211  11 


Q ss_pred             ---CC--ceEEEEe-CCCC-eEEEEcCC--------CeEEEEEcCCCCCCc-ccccceeeccccccEEEEEEcCCCCEEE
Q 047325          196 ---DD--AVNSVVS-SSEG-LIFTGSAD--------GTVKVWKREQHGKGT-KHSLAQTLLKQECAVTALVVSSSRSIVY  259 (368)
Q Consensus       196 ---~~--~v~~~~~-~~~~-~l~~~~~d--------g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (368)
                         ..  .-.++.. ..++ .++.|+..        ....+.++....... ........ .....-.+....+++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~~~~dg~i~v  304 (387)
T d1k3ia3         226 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGSTFI  304 (387)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSCEEE
T ss_pred             ccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccc-ccccccceeeeccCCeEEE
Confidence               10  0112222 2234 55555432        123444433221100 00001111 1111223445568899999


Q ss_pred             EecCCC-----------cEEEEeCCCccccce-----eeeccceEEEEEEeCCCEEEEeeC
Q 047325          260 CGSSDG-----------LVNFWEREKQLSHGG-----VLKGHKLAVLCLAAAGKLVFSGSA  304 (368)
Q Consensus       260 ~~~~dg-----------~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~  304 (368)
                      .|+.+.           .+.+||.++.+-...     ....|.  ...+.+||+.++.|+.
T Consensus       305 ~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs--~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         305 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS--ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE--EEEECTTSCEEEEECC
T ss_pred             ECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceE--EEEECCCCEEEEEeCC
Confidence            987531           478899875432110     011232  2345689999999884

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.21  E-value=0.045  Score=46.84  Aligned_cols=71  Identities=20%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc----ccCeeEEEEecCCe
Q 047325          266 LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH----TGPVKCLAVEEDRD  341 (368)
Q Consensus       266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~  341 (368)
                      .+.-||+.+++............--.++-.+.++++|+.||.++.+|.+++  +.+.++.-.    ..+   +.|..+|+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TG--e~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG--EKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCC--cEeEEEECCCCccccC---EEEEECCE
Confidence            344455555544433322222111234557889999999999999998887  666666432    223   44555775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.029  Score=42.51  Aligned_cols=217  Identities=6%  Similarity=0.030  Sum_probs=121.9

Q ss_pred             CCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325           81 SSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV  157 (368)
Q Consensus        81 ~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  157 (368)
                      +...+.+++|+  .+.|+-+ ..++.|+..+++..........                                ....+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~--------------------------------~~~~p   81 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--------------------------------DLGSP   81 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--------------------------------TCCCE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe--------------------------------ccccc
Confidence            34456778887  5555554 4567788888765543211110                                22457


Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCC--eEEEEEcCCCCCCcc
Q 047325          158 SCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADG--TVKVWKREQHGKGTK  232 (368)
Q Consensus       158 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg--~i~i~d~~~~~~~~~  232 (368)
                      .++++..-+..|+.+ ...+.|.+.++........+.........+++.|.. +++-. ...+  .|..-++.....   
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---  158 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---  158 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---
Confidence            789998756666544 456789999987554433333334567889998766 44433 2222  344445443211   


Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeEEE
Q 047325          233 HSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTICV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i  310 (368)
                         .......-.....+++.+.++.|..+ ...+.|...++...... ....+-..+ ..++.++..|+.. ...+.|..
T Consensus       159 ---~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-~v~~~~~~P-~~lav~~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         159 ---RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQYP-FAVTSYGKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             ---EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCSE-EEEEEETTEEEEEETTTTEEEE
T ss_pred             ---eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-EEECCCCCc-EEEEEECCEEEEEECCCCEEEE
Confidence               11122233456889999877766544 56788999998754332 222222222 3455556656554 45677888


Q ss_pred             EecCCCceeeeEeee-ccccCeeEEEEecC
Q 047325          311 WRRDGAIHTCLSVLT-GHTGPVKCLAVEED  339 (368)
Q Consensus       311 w~~~~~~~~~~~~~~-~h~~~v~~l~~~~~  339 (368)
                      .|..++  +.+..+. .......+|+..++
T Consensus       234 ~~~~~g--~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         234 MDLAIS--KEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EETTTT--EEEEEECCSSCCCCCCEEEECS
T ss_pred             EECCCC--ccceEECCCCCCCcceEEEeCC
Confidence            877665  3333332 22334556655543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.03  Score=42.43  Aligned_cols=196  Identities=14%  Similarity=0.100  Sum_probs=112.5

Q ss_pred             cCCcEEEEEec--CC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCc
Q 047325           43 EEGHIYSLAAS--KD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQ  114 (368)
Q Consensus        43 h~~~i~~~~~~--~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~  114 (368)
                      +...+..|+|+  .+ ++.+-..++.|+..++...  ..........+.+++++  ++.|+.+ ...+.|.+.+++....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            34457778886  33 4555566778888776532  22222333567888887  6666644 4567899998875542


Q ss_pred             cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-Cc--EEEEEccCCeEEEE
Q 047325          115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-RT--FKVWRISDSKCLES  191 (368)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~  191 (368)
                      .....                                ........++++|...+++-.... +.  |.--++........
T Consensus       114 ~~l~~--------------------------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_         114 RVLFD--------------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEC--------------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             EEEec--------------------------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            11110                                122457789999977766655432 23  44445543333333


Q ss_pred             eecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325          192 VSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF  269 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  269 (368)
                      ....-.....+++.+.+ .| ++-...+.|...|++....      .....+.. ....+++. ++.+.++-...+.|..
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~------~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------RKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------EEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe------EEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEE
Confidence            33333456788887665 44 4446678999999864321      11122222 23567765 3444455556678888


Q ss_pred             EeCCCcccc
Q 047325          270 WEREKQLSH  278 (368)
Q Consensus       270 ~d~~~~~~~  278 (368)
                      .|..+++..
T Consensus       234 ~~~~~g~~~  242 (263)
T d1npea_         234 MDLAISKEM  242 (263)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCccc
Confidence            888765544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.043  Score=41.66  Aligned_cols=218  Identities=11%  Similarity=0.014  Sum_probs=119.8

Q ss_pred             cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCcee
Q 047325           65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYI  140 (368)
Q Consensus        65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (368)
                      .|+-.++.+. ...+......+.+++|+  .+.|+-.. .++.|.--+++........                      
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~----------------------   68 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------------------   68 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C----------------------
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce----------------------
Confidence            4666666532 12222344567788887  56665554 4566666555432211000                      


Q ss_pred             EecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEE--cCC
Q 047325          141 EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTG--SAD  216 (368)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~--~~d  216 (368)
                            ..........+..+++.+.+..|+.+ ...+.|.+.++........+.........++..|. |+|+..  +..
T Consensus        69 ------~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1          69 ------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             ------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             ------EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence                  00011122446678888755555555 45678999998776655555555566788998875 444433  334


Q ss_pred             CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceee-eccceEEEEEEe
Q 047325          217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVL-KGHKLAVLCLAA  294 (368)
Q Consensus       217 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~  294 (368)
                      +.|...++.....      .......-.....+++.+.++.|..+ ...+.|...++.......... .........++.
T Consensus       143 ~~I~r~~~dGs~~------~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav  216 (266)
T d1ijqa1         143 AKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV  216 (266)
T ss_dssp             CEEEEEETTSCCE------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred             cceeEeccCCCce------ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEE
Confidence            5676666654311      11122233456889999877766554 566889988987543221111 111122345666


Q ss_pred             CCCEEEEe-eCCCeEEEEecCCC
Q 047325          295 AGKLVFSG-SADKTICVWRRDGA  316 (368)
Q Consensus       295 ~~~~l~~~-~~dg~i~iw~~~~~  316 (368)
                      ++..|+.. ..++.|...+..++
T Consensus       217 ~~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         217 FEDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCEEEEEECCCCeEEEEECCCC
Confidence            56655555 45677777766554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.051  Score=41.30  Aligned_cols=195  Identities=12%  Similarity=0.214  Sum_probs=114.9

Q ss_pred             CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325          101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV  180 (368)
Q Consensus       101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  180 (368)
                      ..++.++|+++.++.....                                 ....|.--.|-.+ +.|+-.+ +..|+-
T Consensus        82 g~~LQiFnletK~klks~~---------------------------------~~e~VvfWkWis~-~~L~lVT-~taVYH  126 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISL-NTVALVT-DNAVYH  126 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEE---------------------------------CSSCCCEEEESSS-SEEEEEC-SSEEEE
T ss_pred             CCeEEEEehhHhhhhceEE---------------------------------cCCCcEEEEecCC-CEEEEEc-CCceEE
Confidence            5689999999887544333                                 3456666677654 3555555 367999


Q ss_pred             EEccC-CeEEEEeecCC----CceEEEEeCCCC--eEEEE--cC----CCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325          181 WRISD-SKCLESVSAHD----DAVNSVVSSSEG--LIFTG--SA----DGTVKVWKREQHGKGTKHSLAQTLLKQECAVT  247 (368)
Q Consensus       181 wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~--~l~~~--~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~  247 (368)
                      |+++. ..+.+.+..|.    ..|..-..+++.  .+++|  ..    .|.+.+|..+..       ..+.+.+|.+...
T Consensus       127 W~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-------~sQ~ieGhaa~F~  199 (327)
T d1utca2         127 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFA  199 (327)
T ss_dssp             EESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEE
T ss_pred             EcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-------cCccccceeeeeE
Confidence            99953 34666666553    356666677777  33333  12    467788888754       4566777766555


Q ss_pred             EEEEcCCC---CEEEEe---cCCCcEEEEeCCCccc--c---ce---eeec----cceEE-EEEEeCCCEEEEeeCCCeE
Q 047325          248 ALVVSSSR---SIVYCG---SSDGLVNFWEREKQLS--H---GG---VLKG----HKLAV-LCLAAAGKLVFSGSADKTI  308 (368)
Q Consensus       248 ~~~~~~~~---~~l~~~---~~dg~i~i~d~~~~~~--~---~~---~~~~----~~~~~-~~~~~~~~~l~~~~~dg~i  308 (368)
                      .+.+..+.   +.++.+   ...+.+++.++.....  .   ..   ....    ..-++ +.++.....++.-+.-|.|
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence            55443221   122222   2336889988765321  1   00   0000    11222 4455567788888999999


Q ss_pred             EEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      ++||++++  .++..-+-..++|-.-+-..+
T Consensus       280 ~lyDleTg--t~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         280 HLYDLETG--TCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             EEEETTTC--CEEEEEECCSSCEEEEEEETT
T ss_pred             EEEEcccc--cEEEEeecCCCceEEeccCCC
Confidence            99999988  455544444555554444333

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.68  E-value=0.057  Score=42.59  Aligned_cols=178  Identities=10%  Similarity=0.087  Sum_probs=93.8

Q ss_pred             EeEEEEcCCCCEEEEEeC------------CCcEEEEEccCCeEE-EEe--ecCC-----CceEEEE--eCCCC--eEEE
Q 047325          157 VSCMSLDQDCGLLYTASW------------DRTFKVWRISDSKCL-ESV--SAHD-----DAVNSVV--SSSEG--LIFT  212 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~-~~~--~~~~-----~~v~~~~--~~~~~--~l~~  212 (368)
                      .-++...|++..+++++.            .|.|.++|+.+.+.. ..+  .+..     -....+.  -.+++  +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346788888877766642            488999998765321 111  1110     1122332  24455  5555


Q ss_pred             E---cCCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEecC-----------------CCcEEEEe
Q 047325          213 G---SADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSS-----------------DGLVNFWE  271 (368)
Q Consensus       213 ~---~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~i~d  271 (368)
                      .   ....+|.+|++.....  ......... ......+.++...++.+++|-..                 .+.+..||
T Consensus       117 vnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4   3456788888865432  111122221 22345788888888888887321                 22344444


Q ss_pred             CCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325          272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE  338 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~  338 (368)
                      .......  ........-+++++|+++|+.+ +..+.|++|+++............-...+-.+.+.+
T Consensus       195 ~~~~~~~--~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         195 PNDVRVV--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             SSCEEEE--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCceEEE--cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            4332211  1112233346788888766555 567889999987542111111112234455666654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.65  E-value=0.084  Score=40.10  Aligned_cols=223  Identities=10%  Similarity=0.123  Sum_probs=124.9

Q ss_pred             EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325           56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS  132 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  132 (368)
                      .||.-+ ..++.++|++..  +..+.- ..+|.-..|- .+.|+-.+ +..|.-|+++........... .+        
T Consensus        76 IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR-~~--------  143 (327)
T d1utca2          76 VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDR-HS--------  143 (327)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEEC-CG--------
T ss_pred             EEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhh-cc--------
Confidence            444433 458999998743  333333 3466666665 66666666 458999999653321110000 00        


Q ss_pred             cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-------CCCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325          133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSS  205 (368)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  205 (368)
                                      .+  ....|..-..+++.+.++..+       -.|.+.+|..+. +.-+.+++|......+...
T Consensus       144 ----------------~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~  204 (327)
T d1utca2         144 ----------------SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKME  204 (327)
T ss_dssp             ----------------GG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCT
T ss_pred             ----------------cc--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcC
Confidence                            00  124555566667777655443       136788999765 4456677776655555443


Q ss_pred             CCC----eEEEE---cCCCeEEEEEcCCCCCCcc---cccceeec---cccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          206 SEG----LIFTG---SADGTVKVWKREQHGKGTK---HSLAQTLL---KQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       206 ~~~----~l~~~---~~dg~i~i~d~~~~~~~~~---~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      .+.    .++.+   ...+++++.++.....+..   .+....+.   ...+-..++..++....+..-+.-|.+++||+
T Consensus       205 g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         205 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEc
Confidence            222    22222   2346899999876432111   11111111   12455678888888888999999999999999


Q ss_pred             CCcccccee-eeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325          273 EKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGSADKTIC  309 (368)
Q Consensus       273 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~  309 (368)
                      +++..+... .......+.+-..+..-+++-..+|.|.
T Consensus       285 eTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         285 ETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            998765322 2222333333333344455555666654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.094  Score=39.67  Aligned_cols=180  Identities=13%  Similarity=0.050  Sum_probs=101.3

Q ss_pred             cCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCe----EEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcC
Q 047325          153 HSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSK----CLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKRE  225 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~  225 (368)
                      ....+..++|++..+.|+-.. .++.|.-.++....    ....+......+..+++...+  ..++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            345677899998777776665 45567666654321    112222223445667765433  55566677899999987


Q ss_pred             CCCCCcccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceeeec--cceEEEEEEeCCCEEEE
Q 047325          226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKG--HKLAVLCLAAAGKLVFS  301 (368)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  301 (368)
                      ...      ..............++++|...+|....  ..+.|.-.++...... .....  ....-+++.+.++.|+-
T Consensus       108 g~~------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred             Cce------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-cccccccceeeEEEeeccccEEEE
Confidence            542      1222333345678899998655555432  3456777777643222 12111  12233666666665555


Q ss_pred             e-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325          302 G-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED  339 (368)
Q Consensus       302 ~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~  339 (368)
                      + ...+.|...+++......+...........+|++..+
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~  219 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED  219 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECC
Confidence            4 5678899999876544444333333344667887754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.19  E-value=0.31  Score=41.61  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec----cccCeeEEEEecCC
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG----HTGPVKCLAVEEDR  340 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~  340 (368)
                      |.|.-||+.+++............--.++-.+.+++.|+.||.++.+|.+++  +.+.++.-    +..|   +.|.-+|
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG--e~LW~~~~~~~~~a~P---~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG--DLLWKFKIPSGAIGYP---MTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCC--cEeeEEECCCCcccCC---eEEEECC
Confidence            3455666666554433322221111223446788889999999999999887  66766643    2233   3455577


Q ss_pred             e
Q 047325          341 D  341 (368)
Q Consensus       341 ~  341 (368)
                      +
T Consensus       528 k  528 (596)
T d1w6sa_         528 T  528 (596)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.85  E-value=0.65  Score=36.34  Aligned_cols=139  Identities=16%  Similarity=0.273  Sum_probs=78.0

Q ss_pred             cEEEEEcc-CCeEEEEeecC-------CCceEEEEe--CCC-C--eEEEEcCCCeEEEEEcCCCCCC-cccccceeeccc
Q 047325          177 TFKVWRIS-DSKCLESVSAH-------DDAVNSVVS--SSE-G--LIFTGSADGTVKVWKREQHGKG-TKHSLAQTLLKQ  242 (368)
Q Consensus       177 ~i~iwd~~-~~~~~~~~~~~-------~~~v~~~~~--~~~-~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~  242 (368)
                      .|.+|.+. ....+..+...       ...+..+|+  ++. +  ++++...+|.+..|.+...... .....++.+ ..
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KM  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-EC
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CC
Confidence            57777764 22233333221       123555555  554 4  6777888999999988544332 122233333 23


Q ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc--ccce--eeec-c---ceEEEEEEe--C--CCEEEEeeCCCeEEE
Q 047325          243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL--SHGG--VLKG-H---KLAVLCLAA--A--GKLVFSGSADKTICV  310 (368)
Q Consensus       243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~--~~~~-~---~~~~~~~~~--~--~~~l~~~~~dg~i~i  310 (368)
                      ...+..|.+.+....|+.+-++.-|..++.+...  ....  ...+ +   ...-+++-.  +  |-+|++.-.+++..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            4568999999998999999888777777654211  1100  1101 1   112233332  3  334455556889999


Q ss_pred             EecCCC
Q 047325          311 WRRDGA  316 (368)
Q Consensus       311 w~~~~~  316 (368)
                      ||....
T Consensus       259 ydr~~~  264 (353)
T d1h6la_         259 YERQGQ  264 (353)
T ss_dssp             EESSTT
T ss_pred             EecCCC
Confidence            998653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.59  Score=35.20  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=38.4

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCcccccee-eeccceEEEEEEeCCCEEEEeeCCC-----eEEEEecCCCceeeeE
Q 047325          254 SRSIVYCGSSD-----GLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGSADK-----TICVWRRDGAIHTCLS  322 (368)
Q Consensus       254 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~  322 (368)
                      ++++++.|+.+     .....+|..+....... .........+...++++++.|+.++     .|.+||+.+.....+.
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  274 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  274 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence            34566665544     34567776654322111 1011111123345888888887654     3778988887666665


Q ss_pred             ee
Q 047325          323 VL  324 (368)
Q Consensus       323 ~~  324 (368)
                      .+
T Consensus       275 ~~  276 (288)
T d1zgka1         275 RM  276 (288)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.70  E-value=0.3  Score=41.52  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |.|.-+|+.+++.+-+................+++++|+.||.++-+|.++++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            568888999998876665332222222223456888899999999999998754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.65  E-value=0.6  Score=39.44  Aligned_cols=54  Identities=17%  Similarity=0.307  Sum_probs=38.4

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |.|.-+|+.+++.+-.................+++++|+.||.++-+|.++++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            568899999999887765432221112222355888999999999999998854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.60  E-value=0.85  Score=36.54  Aligned_cols=136  Identities=13%  Similarity=0.027  Sum_probs=75.7

Q ss_pred             eEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC-----CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325          199 VNSVVSSSEG--LIFTGSADGTVKVWKREQHGK-----GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE  271 (368)
Q Consensus       199 v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  271 (368)
                      ...+..+|||  .++++..+.++.++|++....     ......+.......-....-+|+..|+-..+-.-|..|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            3567889999  555566699999999963211     000111111112233456678888887666777899999999


Q ss_pred             CCCc------c---ccceeeeccceEEE-------EEEeCCCEEEEeeC---CC----------eEEEEecCCCceeeeE
Q 047325          272 REKQ------L---SHGGVLKGHKLAVL-------CLAAAGKLVFSGSA---DK----------TICVWRRDGAIHTCLS  322 (368)
Q Consensus       272 ~~~~------~---~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~---dg----------~i~iw~~~~~~~~~~~  322 (368)
                      +...      .   .....+.-|-..-.       +..++|++|++...   |.          +-.+.|+...+.+++.
T Consensus       357 ~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~  436 (459)
T d1fwxa2         357 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVH  436 (459)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEE
T ss_pred             cchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEe
Confidence            8532      1   11112222211111       12467999988753   33          2356677665555555


Q ss_pred             eeeccccCeeEE
Q 047325          323 VLTGHTGPVKCL  334 (368)
Q Consensus       323 ~~~~h~~~v~~l  334 (368)
                      ......+|=.++
T Consensus       437 d~p~~~ePh~~~  448 (459)
T d1fwxa2         437 DGPTFAEPHDAI  448 (459)
T ss_dssp             EEEESSCCCCEE
T ss_pred             ccCCCCCCccEE
Confidence            554444443333

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.40  E-value=0.38  Score=39.15  Aligned_cols=100  Identities=11%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             cEEEEEEcCCCCEEEEec-----CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC--------------
Q 047325          245 AVTALVVSSSRSIVYCGS-----SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD--------------  305 (368)
Q Consensus       245 ~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------  305 (368)
                      .+...+++|++++++.+-     +.-.++++|+.+++.....+..-......+..|++.|+-...|              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345667899999888532     2336999999998765444433222345677788876543322              


Q ss_pred             --CeEEEEecCCCceeeeEeeeccc--cCeeEEEEecCCeeee
Q 047325          306 --KTICVWRRDGAIHTCLSVLTGHT--GPVKCLAVEEDRDSSS  344 (368)
Q Consensus       306 --g~i~iw~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~  344 (368)
                        ..|..+.+.+....-...+....  ..+..+..+++++++.
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence              25777877665433333333333  3466788899998754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.88  E-value=0.81  Score=38.76  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |.|.-||+.+++.+-..+..............+++++|+.||.++.+|.++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            468889999998887776433211111122345888999999999999998854

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.68  E-value=1.7  Score=36.58  Aligned_cols=75  Identities=23%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-eeEEEEecCCe
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-VKCLAVEEDRD  341 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~  341 (368)
                      |.+.-+|+.+++.......+....--.++-.+.++++|+.||.++.+|.+++  +.+.++.-.... -.=+.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG--e~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG--EALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCC--cEeEEEECCCCccccCEEEEECCE
Confidence            3466667666655544333222211234456788899999999999999887  666666432211 11145556775

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=1.4  Score=34.77  Aligned_cols=169  Identities=11%  Similarity=0.044  Sum_probs=92.0

Q ss_pred             EEEec--CCEEEEccCCCcEEEEcCCc-----------ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325           49 SLAAS--KDLLYTGSDSKNIRVWKNLK-----------EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS  115 (368)
Q Consensus        49 ~~~~~--~~~l~s~~~dg~i~iw~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  115 (368)
                      -|+.+  ..+++.|+.++ ++|-.+..           .....+..-..|..++|+++.|+... ++.+..++...-...
T Consensus        41 LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~  118 (381)
T d1xipa_          41 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLVST-RNALYSLDLEELSEF  118 (381)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTEEEEEE-SSEEEEEESSSTTCE
T ss_pred             eEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCEEEEEe-CCCEEEEEeeccccc
Confidence            44544  44788788775 55654211           01111112336889999988877664 456777766543211


Q ss_pred             ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee--
Q 047325          116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS--  193 (368)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  193 (368)
                      ...                                ..-..++..+.++|.  .++....++.+.++++..++......  
T Consensus       119 ~~~--------------------------------~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_         119 RTV--------------------------------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             EEE--------------------------------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             ccc--------------------------------ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCc
Confidence            100                                012345677777764  56677778999999998875433221  


Q ss_pred             ---cCCCceEEEEeCCCC-eEEEEcCCCeEEEE-EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325          194 ---AHDDAVNSVVSSSEG-LIFTGSADGTVKVW-KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC  260 (368)
Q Consensus       194 ---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  260 (368)
                         .-.+.+.+++|++.+ .++++..+ ...+- ++...      ............+.++.|..+..++++
T Consensus       165 ~~~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~------~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         165 TSFDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLP------SELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCC------HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ceEEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCc------cccCCCcCCCcceeEEEEecCceEEEE
Confidence               123567888888888 56665322 22221 11110      011111123446788888866555554

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.81  E-value=1.4  Score=33.01  Aligned_cols=219  Identities=13%  Similarity=0.132  Sum_probs=104.1

Q ss_pred             CcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325           45 GHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGT  122 (368)
Q Consensus        45 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  122 (368)
                      ..|..++......+.-. ||+|..|-...  ++-.-......|..+.--....+.- .||.+..|.............  
T Consensus        26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~~~--  101 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAE--  101 (273)
T ss_dssp             SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--
T ss_pred             CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeeccccc--
Confidence            35888887665443334 89999995432  2222222334566665543333333 489999998654332111100  


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEE
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV  202 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  202 (368)
                                                    ....+..++....  ..+. -.|+.+..|.-...............|..+
T Consensus       102 ------------------------------~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~  148 (273)
T d1jtdb_         102 ------------------------------ARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTAL  148 (273)
T ss_dssp             ------------------------------GGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred             ------------------------------cccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEE
Confidence                                          1122333433322  2222 247888888644322111111122344444


Q ss_pred             EeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee
Q 047325          203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL  282 (368)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  282 (368)
                      +-..  ..+....++.++.|-......      ..........|..++..... .++.  .||.|+.|=....-.+. ..
T Consensus       149 ~~~~--~~~~~~~~g~~~~~G~~~~g~------~~~~~~~~~~v~~Is~G~~h-~~~l--~dG~v~~WG~n~~Gql~-~~  216 (273)
T d1jtdb_         149 DGGV--YTALAVKNGGVIAWGDNYFGQ------TTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-VP  216 (273)
T ss_dssp             EECS--SEEEEEETTEEEEEECCTTST------TSCCGGGSSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-CC
T ss_pred             eccc--eeeeeecccceeEeecccCCc------ccccccccCCccceecccee-eEEE--ecCcEEEcCCCCCCccC-CC
Confidence            4322  222233578899997654432      11112234457777664332 2222  37999999654221111 11


Q ss_pred             eccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          283 KGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       283 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ......+..++......+.- .||.|..|-.
T Consensus       217 ~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~  246 (273)
T d1jtdb_         217 TEALSGVSAIASGEWYSLAL-KNGKVIAWGS  246 (273)
T ss_dssp             GGGGSSCCEEEECSSCEEEE-ETTEEEEEST
T ss_pred             ccCCCCcEEEEeCcceEEEE-ECCEEEEECC
Confidence            11112244455433332222 4899999943

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=1.8  Score=36.61  Aligned_cols=54  Identities=19%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325          176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK  229 (368)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  229 (368)
                      |.|.-+|+.+++.+-..+.+............+++++|+.||.++-+|.++++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            678889999999887776543222212122345888899999999999998854

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.03  E-value=3  Score=35.17  Aligned_cols=75  Identities=20%  Similarity=0.162  Sum_probs=46.6

Q ss_pred             CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-eeEEEEecCCe
Q 047325          265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-VKCLAVEEDRD  341 (368)
Q Consensus       265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~  341 (368)
                      |.|.-+|+.+++.......++...--.++..+.++++|+.||.++.+|.+++  +.+.+++-.... -.=+.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TG--e~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG--KELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCC--cEeEEEECCCCccccCEEEEECCE
Confidence            4566666666655544433332222234567888999999999999998887  667666532211 11156667885

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.76  E-value=2.4  Score=33.44  Aligned_cols=102  Identities=5%  Similarity=0.065  Sum_probs=64.4

Q ss_pred             CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325          156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  235 (368)
                      .|..++|+.+  .+++.. ++.+..++..+-...........++..+.+.|.. ++....++.+.++++..........-
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~  163 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQN  163 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCC
Confidence            5788899755  455554 4678888877654444444456678888888865 44556688999999876532100000


Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEec
Q 047325          236 AQTLLKQECAVTALVVSSSRSIVYCGS  262 (368)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~  262 (368)
                      .... .-.+.+.+++|++.+..++++.
T Consensus       164 v~~~-~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         164 VTSF-DVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEE-EECSSEEEEEETTSCEEEEEEE
T ss_pred             cceE-EecCCceEEEEeCCcEEEEEeC
Confidence            0011 1235578888888888887764

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.35  E-value=2.1  Score=31.94  Aligned_cols=183  Identities=16%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      ...|..|+--....+.-. ||.|..|-.+...++-....                                ....|..+.
T Consensus        25 ~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~--------------------------------~~~~v~~v~   71 (273)
T d1jtdb_          25 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA--------------------------------TQSGVDAIA   71 (273)
T ss_dssp             SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGG--------------------------------GGSCCCEEE
T ss_pred             CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeec--------------------------------ccccceEEe
Confidence            345777777655554445 89999998765543221110                                122344444


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325          162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK  241 (368)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  241 (368)
                      .-.  .+.+. -.|+.+..|.....-...........+..++......++  -.|+.+..|.......      ......
T Consensus        72 ~G~--~~~~a-l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~--~~dg~v~~~g~~~~~~------~~~~~~  140 (273)
T d1jtdb_          72 AGN--YHSLA-LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LKDGKVIAWGDDSDGQ------TTVPAE  140 (273)
T ss_dssp             ECS--SEEEE-EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEE--EETTEEEEEECCTTST------TSCCGG
T ss_pred             cCC--Cceee-eeeeeeeccCCCcceeeccccccccceeEEeeecccccc--cccccceecccCCCCc------eeeecc
Confidence            322  22222 247888888754321111111112234444443332222  2488999997543322      111111


Q ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325          242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR  313 (368)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  313 (368)
                      ....|..++-.  ...+ ....++.++.|-....... .........+..++......+.-. ||.|+.|=.
T Consensus       141 ~~~~v~~~~~~--~~~~-~~~~~g~~~~~G~~~~g~~-~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~  207 (273)
T d1jtdb_         141 AQSGVTALDGG--VYTA-LAVKNGGVIAWGDNYFGQT-TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGD  207 (273)
T ss_dssp             GGSSEEEEEEC--SSEE-EEEETTEEEEEECCTTSTT-SCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEEC
T ss_pred             CCceEEEEecc--ceee-eeecccceeEeecccCCcc-cccccccCCccceeccceeeEEEe-cCcEEEcCC
Confidence            22334444432  2222 3335788888875532222 122223445667777554444333 899999954

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.24  E-value=3.9  Score=31.78  Aligned_cols=192  Identities=14%  Similarity=0.220  Sum_probs=105.5

Q ss_pred             EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe------CC--EEEEEe-CC---CeEEEEeecCCCcccc-ccCCc
Q 047325           56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS------GE--KIFTGH-QD---GKIRVWKISPKNQSVH-KRAGT  122 (368)
Q Consensus        56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~------~~--~l~s~~-~d---g~i~vw~~~~~~~~~~-~~~~~  122 (368)
                      +++...+++-|.+||+......+. ..+.++.+..-      ++  -++.++ ++   .+|.+|.+........ .....
T Consensus        42 lI~gTdK~~Gl~vYdL~G~~l~~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~  120 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGKMLHSY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPN  120 (353)
T ss_dssp             EEEEEETTSCCEEEETTCCEEEEC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSS
T ss_pred             EEEEEcCcCCEEEEcCCCcEEEec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccc
Confidence            666667776799999874433332 24566666543      12  244444 32   3688888864432111 10000


Q ss_pred             cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE--cCC-CC-EEEEEeCCCcEEEEEcc---CC----eEEEE
Q 047325          123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL--DQD-CG-LLYTASWDRTFKVWRIS---DS----KCLES  191 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~---~~----~~~~~  191 (368)
                      .+                         ...-...+..+++  ++. +. ++++...+|.+..|.+.   .+    +.++.
T Consensus       121 ~p-------------------------~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~  175 (353)
T d1h6la_         121 RP-------------------------IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA  175 (353)
T ss_dssp             SC-------------------------EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE
T ss_pred             cc-------------------------cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec
Confidence            00                         0001223555665  554 43 56677778999888763   22    34455


Q ss_pred             eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec--cccccEEEEEEcC--C--CCEEEEecCC
Q 047325          192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL--KQECAVTALVVSS--S--RSIVYCGSSD  264 (368)
Q Consensus       192 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~--~~~l~~~~~d  264 (368)
                      +.. ...+..+.+.+.. .|+.+-++..|..++...... ..........  ....-+..++.-.  +  |-+|++.-.+
T Consensus       176 f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~-~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         176 FKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSC-SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             cCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCC-ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            553 3456777777765 899988888877777653322 1111111111  2345567776543  2  3345555567


Q ss_pred             CcEEEEeCCCc
Q 047325          265 GLVNFWEREKQ  275 (368)
Q Consensus       265 g~i~i~d~~~~  275 (368)
                      ++..+||.+..
T Consensus       254 n~f~vydr~~~  264 (353)
T d1h6la_         254 SSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEESSTT
T ss_pred             CeEEEEecCCC
Confidence            88999998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.54  E-value=5  Score=32.14  Aligned_cols=102  Identities=11%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             EeEEEEcCCCCEEEEEe-CCC----cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEc---------------
Q 047325          157 VSCMSLDQDCGLLYTAS-WDR----TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGS---------------  214 (368)
Q Consensus       157 v~~~~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~---------------  214 (368)
                      +....++|++++++.+- .+|    .|+++|+.+++.+...-. ......+.|.+++ .|+ +.-               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44567899999887553 333    799999999987642211 1222567899988 443 321               


Q ss_pred             CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325          215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG  261 (368)
Q Consensus       215 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  261 (368)
                      ....|..+.+.+...  ....+.........+..+..++++++++..
T Consensus       206 ~~~~v~~h~lgt~~~--~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         206 LHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEECCCCcc--ccccccccccCCceEEeeeccCCcceeeEE
Confidence            123577777755421  111111112223346677889999987653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.49  E-value=3.1  Score=29.61  Aligned_cols=156  Identities=11%  Similarity=0.108  Sum_probs=84.2

Q ss_pred             CCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325           83 GLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS  161 (368)
Q Consensus        83 ~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (368)
                      -.|.+++.+ .+..++|+......+|-++.++..............+                       -..+-|..+.
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtD-----------------------I~~d~I~G~g  160 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSD-----------------------IRGDLIAGLG  160 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEE-----------------------EETTEEEEEE
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEe-----------------------ccCCeEEEEe
Confidence            457788887 5577788888889999998887533332222111111                       0223344444


Q ss_pred             Ec-CCCCEEEEEeC-CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcC---CCeEEEEEcCCCCCCcccccc
Q 047325          162 LD-QDCGLLYTASW-DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSA---DGTVKVWKREQHGKGTKHSLA  236 (368)
Q Consensus       162 ~~-~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~  236 (368)
                      +- ++..-++++.. .|.+++++...|.           ++.....++..++++.+   .....-+|++.+.-.....+.
T Consensus       161 ~~~g~~~sfF~adl~SG~lri~tpkeGS-----------~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~  229 (313)
T d2hu7a1         161 FFGGGRVSLFTSNLSSGGLRVFDSGEGS-----------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPS  229 (313)
T ss_dssp             EEETTEEEEEEEETTTEEEEEECCSSEE-----------EEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSS
T ss_pred             eecCCcceEEEEecccCCEEEecCCCCc-----------ccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCc
Confidence            32 23233555554 6677777665544           44444444444433322   111223466544210000011


Q ss_pred             eeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325          237 QTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWER  272 (368)
Q Consensus       237 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  272 (368)
                      ..+. -....|.-+-+.|++++++.+-.||.-++|.-
T Consensus       230 kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         230 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             CHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            1111 12345666779999999999999999999873

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.45  E-value=5.3  Score=32.30  Aligned_cols=55  Identities=4%  Similarity=-0.041  Sum_probs=38.9

Q ss_pred             cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee--------cCCCceEEEEeCCC
Q 047325          153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS--------AHDDAVNSVVSSSE  207 (368)
Q Consensus       153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~  207 (368)
                      .-...++|+|.|+++++++--..|.|++++..+++......        .-+.....++++|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34567899999999877766447999999987765433221        12346778999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.44  E-value=9.4  Score=32.11  Aligned_cols=151  Identities=11%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce-EEEEeCC---CCeEEEEcC------CCeEEEEEcCCCCCCccccc
Q 047325          166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSS---EGLIFTGSA------DGTVKVWKREQHGKGTKHSL  235 (368)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~---~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~  235 (368)
                      ..+++.++.|+.|.-.|.++|+.+..+....... ..+.-.|   ++.++++..      .|.|+-+|.++++...+...
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3478889999999999999999988775322111 1111111   346666653      48899999988765322111


Q ss_pred             cee--------------------------------eccccccEEEEEEcCCCCEEEEecCC----------------CcE
Q 047325          236 AQT--------------------------------LLKQECAVTALVVSSSRSIVYCGSSD----------------GLV  267 (368)
Q Consensus       236 ~~~--------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i  267 (368)
                      ...                                .......-..+++.+...++..+..+                ..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            000                                00001112234556666666555432                346


Q ss_pred             EEEeCCCccccceeeecc-c--------eEEE-EE-EeCC---CEEEEeeCCCeEEEEecCCC
Q 047325          268 NFWEREKQLSHGGVLKGH-K--------LAVL-CL-AAAG---KLVFSGSADKTICVWRRDGA  316 (368)
Q Consensus       268 ~i~d~~~~~~~~~~~~~~-~--------~~~~-~~-~~~~---~~l~~~~~dg~i~iw~~~~~  316 (368)
                      .-.|.++++........| .        ..++ .+ ..++   ..++.+..+|.+.++|..++
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG  343 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG  343 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCC
Confidence            667888776654332221 1        1111 11 1233   36788889999999998776

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.40  E-value=7.4  Score=31.40  Aligned_cols=58  Identities=9%  Similarity=0.090  Sum_probs=36.0

Q ss_pred             CceEEEEeCCCCeEEEEc-CCCeEEEEEcCCCCCCccccc--ceeeccccccEEEEEEcCC
Q 047325          197 DAVNSVVSSSEGLIFTGS-ADGTVKVWKREQHGKGTKHSL--AQTLLKQECAVTALVVSSS  254 (368)
Q Consensus       197 ~~v~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~  254 (368)
                      ...++|+|.|++.|+++. ..|.|++++............  .......+.....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            456799999999555444 479999998765432110000  0111233567889999984