Citrus Sinensis ID: 047344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MKEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFARRGN
Secondary Structure (PSIPRED)
ccEEEEEEccccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHccEEEEcccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHEEHHHHHccccHHHHHHHHHHccEEEEEcHHHHHHHHHHcHHHHcccccHHHHHHHHHHccccEEEEEEccccc
Coil and Loop (DISEMBL)
MKEIGTITKSFKELFNPKIKKILREIFNGIFlkannttiHMFHIFKHYitygypnlknVRELIYMGGYTYFFLTFARRGN
Flexible Loop (DISEMBL)
mkeigtitksfkelfnPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFARRGN
Low Complexity Region (SEG)
MKEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFARRGN
Disordered region (IsUnstruct)
******ITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFA****
Disordered Region (DISOPRED)
**EIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYF**T******
Disordered Region (DISEMBL)
MKEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFARRGN
Disordered Region (DISPRO)
*KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFAR***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLTFARRGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
P60039	242	60S ribosomal protein L7-	yes	no	0.675	0.223	0.559	5e-12
Q9LHP1	244	60S ribosomal protein L7-	no	no	0.675	0.221	0.559	1e-11
P60040	242	60S ribosomal protein L7-	no	no	0.675	0.223	0.542	3e-11
P32100	252	60S ribosomal protein L7	yes	no	0.662	0.210	0.534	4e-11
P14148	270	60S ribosomal protein L7	yes	no	0.662	0.196	0.517	2e-10
Q4R506	247	60S ribosomal protein L7	N/A	no	0.662	0.214	0.517	2e-10
Q58DT1	248	60S ribosomal protein L7	yes	no	0.662	0.213	0.517	2e-10
P18124	248	60S ribosomal protein L7	yes	no	0.662	0.213	0.517	2e-10
P05426	260	60S ribosomal protein L7	yes	no	0.662	0.203	0.5	2e-10
Q5R9R4	247	60S ribosomal protein L7	yes	no	0.662	0.214	0.517	2e-10

>sp|P60039|RL73_ARATH 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK KKIL     R+IFNG+FLK N  T++M    + Y+TYGYPNLK+V+ELIY  GY
Sbjct: 95  IDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK KKIL     R+IFNG+FLK N  TI+M    + Y+TYGYPNLK+V+ELIY  G+
Sbjct: 97  IDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155

Arabidopsis thaliana (taxid: 3702)

>sp|P60040|RL72_ARATH 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK KKIL     R+IFNG+FLK N  T++M    + Y+TYG+PNLK+V+ELIY  GY
Sbjct: 95  IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGY 153

Arabidopsis thaliana (taxid: 3702)

>sp|P32100|RL7_DROME 60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 5/58 (8%)

Query: 17  PKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYT 69
           PK++K+L     R+I NG+F+K N  TI+M  I + YIT+GYPNLK+VRELIY  G+ 
Sbjct: 106 PKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFV 163

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Drosophila melanogaster (taxid: 7227)

>sp|P14148|RL7_MOUSE 60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 124 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 181

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Mus musculus (taxid: 10090)

>sp|Q4R506|RL7_MACFA 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 101 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 158

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Macaca fascicularis (taxid: 9541)

>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 102 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 159

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Bos taurus (taxid: 9913)

>sp|P18124|RL7_HUMAN 60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 102 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 159

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Homo sapiens (taxid: 9606)

>sp|P05426|RL7_RAT 60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +++M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 114 SPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGY 171

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Rattus norvegicus (taxid: 10116)

>sp|Q5R9R4|RL7_PONAB 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 101 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 158

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
255637395	198	unknown [Glycine max]	0.675	0.272	0.576	1e-11
294438964	244	hypothetical protein UP-4 [Dimocarpus lo	0.675	0.221	0.576	2e-11
351726058	242	uncharacterized protein LOC100500011 [Gl	0.675	0.223	0.576	2e-11
356526310	243	PREDICTED: 60S ribosomal protein L7-4-li	0.675	0.222	0.576	2e-11
388514341	243	unknown [Medicago truncatula]	0.675	0.222	0.576	3e-11
346465019	217	hypothetical protein [Amblyomma maculatu	0.675	0.248	0.559	4e-11
255566301	243	60S ribosomal protein L7, putative [Rici	0.675	0.222	0.559	6e-11
255552946	243	60S ribosomal protein L7, putative [Rici	0.675	0.222	0.559	6e-11
225445899	245	PREDICTED: 60S ribosomal protein L7-4 [V	0.675	0.220	0.576	8e-11
388493630	244	unknown [Medicago truncatula]	0.675	0.221	0.559	8e-11

>gi|255637395|gb|ACU19026.1| unknown [Glycine max]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 96  MDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGY 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294438964|gb|ACV83305.2| hypothetical protein UP-4 [Dimocarpus longan]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 97  MDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGY 155

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726058|ref|NP_001235578.1| uncharacterized protein LOC100500011 [Glycine max] gi|255628485|gb|ACU14587.1| unknown [Glycine max]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 95  MDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGY 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526310|ref|XP_003531761.1| PREDICTED: 60S ribosomal protein L7-4-like [Glycine max]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 96  MDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGY 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514341|gb|AFK45232.1| unknown [Medicago truncatula]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 96  MDPKTRKILQLFRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346465019|gb|AEO32354.1| hypothetical protein [Amblyomma maculatum]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+V+ELIY  GY
Sbjct: 97  MDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGY 155

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255566301|ref|XP_002524137.1| 60S ribosomal protein L7, putative [Ricinus communis] gi|223536604|gb|EEF38248.1| 60S ribosomal protein L7, putative [Ricinus communis]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+V+ELIY  GY
Sbjct: 96  IDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGY 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552946|ref|XP_002517516.1| 60S ribosomal protein L7, putative [Ricinus communis] gi|223543527|gb|EEF45058.1| 60S ribosomal protein L7, putative [Ricinus communis]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+V+ELIY  GY
Sbjct: 96  IDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGY 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445899|ref|XP_002262697.1| PREDICTED: 60S ribosomal protein L7-4 [Vitis vinifera]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+IFNG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 98  MHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493630|gb|AFK34881.1| unknown [Medicago truncatula]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK +KIL     R+I NG+FLK N  T++M H  + Y+TYGYPNLK+VRELIY  GY
Sbjct: 97  MDPKSRKILQLLRLRQICNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGY 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2051874	247	AT2G44120 [Arabidopsis thalian	0.662	0.214	0.568	9.1e-13
TAIR|locus:2086809	244	AT3G13580 [Arabidopsis thalian	0.662	0.217	0.568	1.9e-12
TAIR|locus:2038741	242	AT2G01250 [Arabidopsis thalian	0.662	0.219	0.551	3.9e-12
ZFIN|ZDB-GENE-030131-8654	246	rpl7 "ribosomal protein L7" [D	0.662	0.215	0.517	1.3e-11
FB|FBgn0005593	252	RpL7 "Ribosomal protein L7" [D	0.65	0.206	0.543	1.5e-11
UNIPROTKB|A8MUD9	208	RPL7 "60S ribosomal protein L7	0.662	0.254	0.517	3.5e-11
UNIPROTKB|Q58DT1	248	RPL7 "60S ribosomal protein L7	0.662	0.213	0.517	4.1e-11
UNIPROTKB|P18124	248	RPL7 "60S ribosomal protein L7	0.662	0.213	0.517	4.1e-11
UNIPROTKB|F1RWI5	257	F1RWI5 "Uncharacterized protei	0.662	0.206	0.517	5.1e-11
UNIPROTKB|F1Q0Z2	248	RPL7 "Uncharacterized protein"	0.662	0.213	0.5	5.4e-11

TAIR|locus:2051874 AT2G44120 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK KKIL     R+IFNG+FLK N  T++M    + Y+TYGYPNLK+V+ELIY  GY
Sbjct:   101 DPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2086809 AT3G13580 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK KKIL     R+IFNG+FLK N  TI+M    + Y+TYGYPNLK+V+ELIY  G+
Sbjct:    98 DPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2038741 AT2G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK KKIL     R+IFNG+FLK N  T++M    + Y+TYG+PNLK+V+ELIY  GY
Sbjct:    96 DPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGY 153

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

ZFIN|ZDB-GENE-030131-8654 rpl7 "ribosomal protein L7" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG+F+K N  +I+M  I + YI +GYPNLK+VRELIY  G+
Sbjct:   100 SPKVRKVLQLLRLRQIFNGVFVKLNKASINMLRIAEPYIAWGYPNLKSVRELIYKRGF 157

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

FB|FBgn0005593 RpL7 "Ribosomal protein L7" [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query:    17 PKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             PK++K+L     R+I NG+F+K N  TI+M  I + YIT+GYPNLK+VRELIY  G+
Sbjct:   106 PKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGF 162

GO:0006412 "translation" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0003729 "mRNA binding" evidence=NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0035073 "pupariation" evidence=IMP

UNIPROTKB|A8MUD9 RPL7 "60S ribosomal protein L7" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct:    62 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 119

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q58DT1 RPL7 "60S ribosomal protein L7" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct:   102 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 159

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P18124 RPL7 "60S ribosomal protein L7" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct:   102 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 159

GO:0006364 "rRNA processing" evidence=IMP

GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

UNIPROTKB|F1RWI5 F1RWI5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct:   104 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 161

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1Q0Z2 RPL7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:    16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             +PK++K+L     R+IFNG F+K N  +++M  I + YI +GYPNLK+V ELIY  GY
Sbjct:   102 SPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGY 159

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
cd01657	159	cd01657, Ribosomal_L7_archeal_euk, Ribosomal prote	1e-13
TIGR01310	235	TIGR01310, L7, 60S ribosomal protein L7, eukaryoti	2e-13
cd00355	53	cd00355, Ribosomal_L30_like, Ribosomal protein L30	0.002

>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

 Score = 61.4 bits (150), Expect = 1e-13
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 16 NPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYT 69
           PKI+K      LR I N +F+K    TI M    + Y+T+G PNL+ +RELIY  G  
Sbjct: 14 PPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRL 72

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Length = 159

>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 12  KELFNPKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMG 66
                PK +K+LR     ++ NG+F+K    T+ M  I + Y+ YGYPNLK+VRELIY  
Sbjct: 83  INGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLEMLRIVEPYVAYGYPNLKSVRELIYKR 142

Query: 67  GYT 69
           G+ 
Sbjct: 143 GFA 145

This model describes the eukaryotic 60S (cytosolic) ribosomal protein L7 and paralogs that may or may not also be L7. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Length = 235

>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

 Score = 32.8 bits (76), Expect = 0.002
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 16 NPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYG 52
           PK +K      LR+I   +F+K   +   M    KH +T G
Sbjct: 12 PPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
TIGR01310	235	L7 60S ribosomal protein L7, eukaryotic. Members o	99.96
TIGR01309	152	L30P_arch 50S ribosomal protein L30P, archaeal. Th	99.94
cd01657	159	Ribosomal_L7_archeal_euk Ribosomal protein L7, whi	99.93
PRK06049	154	rpl30p 50S ribosomal protein L30P; Reviewed	99.93
KOG3184	235	consensus 60S ribosomal protein L7 [Translation, r	99.89
COG1841	55	RpmD Ribosomal protein L30/L7E [Translation, ribos	99.73
cd00355	53	Ribosomal_L30_like Ribosomal protein L30, which is	99.66
PF00327	52	Ribosomal_L30: Ribosomal protein L30p/L7e; InterPr	99.58
PRK05611	59	rpmD 50S ribosomal protein L30; Reviewed	99.55
cd01658	54	Ribosomal_L30 Ribosomal protein L30, which is foun	99.28
TIGR01308	55	rpmD_bact ribosomal protein L30, bacterial/organel	99.26

>TIGR01310 L7 60S ribosomal protein L7, eukaryotic

Probab=99.96  E-value=3.3e-30  Score=189.92  Aligned_cols=71  Identities=39%  Similarity=0.693  Sum_probs=69.3

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT   74 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~   74 (80)
                      ++||||||++++||++++||     +++||||||++|+++.+||++|+|||||||||++||++||+|||++++++.
T Consensus        75 ~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~  150 (235)
T TIGR01310        75 LFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQ  150 (235)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCC
Confidence            68999999999999999999     999999999999999999999999999999999999999999999999875

Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).

>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal

Probab=99.94  E-value=3.2e-27  Score=164.66  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceee
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTY   70 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~k   70 (80)
                      +||+||||..++||++++||     +++|+|||+++||++.+||++|+|||+|||||++||++||+|||+++
T Consensus         1 ~~ViriRg~ig~~~~~r~tL~~LrL~ri~~~V~v~~tp~~~gML~kV~~yV~~ge~~~~tv~~Li~kRG~~~   72 (152)
T TIGR01309         1 LAVIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLELLIRKRGRLV   72 (152)
T ss_pred             CeEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhHhheeEecCCHHHHHHHHHHhcccc
Confidence            68999999999999999999     99999999999999999999999999999999999999999999964

This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.

>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

Probab=99.93  E-value=2e-26  Score=161.03  Aligned_cols=71  Identities=35%  Similarity=0.456  Sum_probs=68.8

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT   74 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~   74 (80)
                      ++|||+||..++||++++||     +++|+|||+++||++.+||++|+|||+|||||++||++||+|||+++++.+
T Consensus         2 ~~Virirg~~g~~~~~r~tL~~LgL~k~~~~v~~~~t~~~~gmL~kV~~~V~~ge~~~~tv~~Li~kRG~~~~~~~   77 (159)
T cd01657           2 YAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQ   77 (159)
T ss_pred             EEEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhhhheEeccCcHHHHHHHHHHhCeecCCCe
Confidence            68999999999999999999     999999999999999999999999999999999999999999999999853

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.

>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed

Probab=99.93  E-value=8e-26  Score=157.93  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             eEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcce
Q 047344            3 EIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY   68 (80)
Q Consensus         3 ~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~   68 (80)
                      -++|+||||..+++|++++||     +++|+|||+++||++.+||++|+|||+|||||++||++||+|||+
T Consensus         2 ~~~ViriRg~ig~~~~~r~tL~~LgL~ki~~~V~v~~tp~~~GML~kV~~~V~~ge~~~~tv~~Li~kRG~   72 (154)
T PRK06049          2 MYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGR   72 (154)
T ss_pred             cEEEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhhceeEEeeCchHHHHHHHHHhCc
Confidence            379999999999999999999     999999999999999999999999999999999999999999999

>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=9.5e-24  Score=155.74  Aligned_cols=70  Identities=43%  Similarity=0.686  Sum_probs=66.5

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceee-eec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTY-FFL   73 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~k-i~~   73 (80)
                      -.|||+||+++++|+.+++|     +++|+||||++|+++.+||++|+||||||+||+++++|||+|||+++ ++.
T Consensus        76 ~fvvri~gin~v~pk~~k~l~lLrL~~If~g~fVKlnk~~~~mLriVepYVa~G~pnlksv~elI~krG~~k~~~~  151 (235)
T KOG3184|consen   76 AFVIRIRGVNGVEPKSRKVLQLLRLKQIFNGTFVKLNKATVNMLRIVEPYIAWGYPNLKSVSELIYKRGYGKKIEK  151 (235)
T ss_pred             ceeeecccccccCchHHHHHHHHHhhccccceeEEechhhhhhHhhcccceeeccCcHHHHHHHHhhcccccccCC
Confidence            36899999999999999999     99999999999999999999999999999999999999999999995 654

>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5.1e-18  Score=101.55  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY   53 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~   53 (80)
                      ++|+|+||..|+||++++||     +++||+|++++||++.|||++|+|||+|||
T Consensus         1 ~~V~~iRs~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~kV~~lV~v~e   55 (55)
T COG1841           1 LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLVTVGE   55 (55)
T ss_pred             CeEEEEeccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHHHHHhheEecC
Confidence            57999999999999999999     999999999999999999999999999996

>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=99.66  E-value=2e-16  Score=92.84  Aligned_cols=48  Identities=27%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             EEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEe
Q 047344            5 GTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYG   52 (80)
Q Consensus         5 ~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G   52 (80)
                      .|+|+||..|.+|++++||     +++|++||+++||++.|||++|+|||+||
T Consensus         1 ~V~~irs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~gml~kV~~lV~~~   53 (53)
T cd00355           1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG   53 (53)
T ss_pred             CEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhccceEEEC
Confidence            3799999999999999999     99999999999999999999999999997

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.58  E-value=3.8e-15  Score=86.96  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             eEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccE
Q 047344            3 EIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYI   49 (80)
Q Consensus         3 ~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYV   49 (80)
                      .+.|+||||..|.||++++||     +++|++||+++||++.|||++|+|||
T Consensus         1 ~l~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~gml~kV~~lV   52 (52)
T PF00327_consen    1 LLFVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRGMLKKVKHLV   52 (52)
T ss_dssp             EEEEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHHHHHHTGCGE
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHHHHHHHHhhC
Confidence            478999999999999999999     99999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....

>PRK05611 rpmD 50S ribosomal protein L30; Reviewed

Probab=99.55  E-value=1.1e-14  Score=87.73  Aligned_cols=53  Identities=19%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344            1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY   53 (80)
Q Consensus         1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~   53 (80)
                      |+++.|+++||..|.||++++||     +++|++|++++||++.|||++|++||+|=+
T Consensus         1 m~~~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV~vee   58 (59)
T PRK05611          1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEE   58 (59)
T ss_pred             CCcEEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhEEEEe
Confidence            78999999999999999999999     999999999999999999999999999964

>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=99.28  E-value=7.4e-12  Score=74.08  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=44.9

Q ss_pred             EEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEE
Q 047344            5 GTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITY   51 (80)
Q Consensus         5 ~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~   51 (80)
                      -|.++||..|.+|+.++||     +++|++|++++||++.|||++|++||.+
T Consensus         2 ~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV~v   53 (54)
T cd01658           2 KITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKV   53 (54)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheEEe
Confidence            4789999999999999999     9999999999999999999999999975

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle

Probab=99.26  E-value=1.1e-11  Score=73.71  Aligned_cols=48  Identities=21%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             EEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEe
Q 047344            5 GTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYG   52 (80)
Q Consensus         5 ~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G   52 (80)
                      -|.++||..|.+|+.++||     +++|++|++++||++.|||++|++||.+-
T Consensus         2 kItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV~ve   54 (55)
T TIGR01308         2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLVKVE   54 (55)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheEEEe
Confidence            3689999999999999999     99999999999999999999999999864

This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
3izr_e	244	Localization Of The Large Subunit Ribosomal Protein		2e-13
2zkr_w	270	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-11
3zf7_w	257	High-resolution Cryo-electron Microscopy Structure		1e-06
3izs_e	244	Localization Of The Large Subunit Ribosomal Protein		5e-05
1s1i_F	162	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-05
3jyw_F	213	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-05
4a17_V	239	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-04

>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 244

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 15  FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
            +PK KKIL     R+IFNG+FLK N  TI+M    + Y+TYGYPNLK+VRELIY  GY
Sbjct: 97  MHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGY 155

>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 270

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 16  NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +PK++K+L     R+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY
Sbjct: 124 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 181

>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 257

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 17  PKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           PK +KIL     R+IFN +F++ N    +M    + YI YGYP+L  VR ++Y  G+
Sbjct: 112 PKQRKILQLLRLRQIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGH 168

>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17  PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           PK +K+L+      I +G F+K    T+ +  + + Y+ YGYP+   +R+L+Y  G+
Sbjct: 97  PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 153

>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
          PK +K+L+      I +G F+K    T+ +  + + Y+ YGYP+   +R+L+Y  G+
Sbjct: 15 PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 71

>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17  PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           PK +K+L+      I +G F+K    T+ +  + + Y+ YGYP+   +R+L+Y  G+
Sbjct: 66  PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 122

>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 239

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 15  FNPKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYT 69
            +P +K++LR     ++ NG F + N  +++M      +IT+GYP    + +LIY  G+ 
Sbjct: 92  LHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFA 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	4e-08
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	9e-07
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	1e-06
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	2e-06
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	3e-06
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	2e-05

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Length = 154

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 4/55 (7%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 16 NPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYM 65
          +  I+       +  + +   +   +    M      ++ +G P+ + +  ++  
Sbjct: 14 HTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLAT 68

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Length = 213

 Score = 43.3 bits (101), Expect = 9e-07
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 15  FNPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
             PK +K+     L  I +G F+K    T+ +  + + Y+ YGYP+   +R+L+Y  G+
Sbjct: 64  IPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 122

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 270

 Score = 42.5 bits (99), Expect = 2e-06
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 15  FNPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYT 69
            +PK++K+     LR+IFNG F+K N  +I+M  I + YI +GYPNLK+V ELIY  GY 
Sbjct: 123 VSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYG 182

Query: 70  Y 70
            
Sbjct: 183 K 183

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Length = 239

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 16  NPKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
           +P +K++     LR++ NG F + N  +++M      +IT+GYP    + +LIY  G+
Sbjct: 93  HPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	99.94
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	99.94
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	99.94
3j21_Y	155	50S ribosomal protein L30P; archaea, archaeal, KIN	99.94
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	99.93
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	99.89
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	99.88
1bxy_A	60	Protein (ribosomal protein L30); X-RAY crystallogr	99.57
3r8s_Z	58	50S ribosomal protein L30; protein biosynthesis, R	99.3
2zjr_W	55	50S ribosomal protein L30; ribosome, large ribosom	99.25

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V

Probab=99.94  E-value=1.7e-27  Score=174.73  Aligned_cols=71  Identities=27%  Similarity=0.546  Sum_probs=68.9

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT   74 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~   74 (80)
                      ++||||||++|+||++++||     +++|+|||+++||++.+||++|+|||+|||||++||++||+|||++++|..
T Consensus        81 ~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~  156 (239)
T 4a17_V           81 AFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQ  156 (239)
T ss_dssp             EEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTE
T ss_pred             EEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCc
Confidence            67999999999999999999     999999999999999999999999999999999999999999999999873

>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.94  E-value=6.6e-27  Score=162.15  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcce
Q 047344            1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY   68 (80)
Q Consensus         1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~   68 (80)
                      |.++.|+||||..++||++++||     +++|++||+++||++.+||++|+|||+|||||++||+|||+|||+
T Consensus         1 m~~~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~   73 (155)
T 3j21_Y            1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGR   73 (155)
T ss_dssp             CCEEEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCC
T ss_pred             CCcEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhcc
Confidence            88999999999999999999999     999999999999999999999999999999999999999999999

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...

Probab=99.93  E-value=2e-26  Score=159.73  Aligned_cols=70  Identities=7%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFL   73 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~   73 (80)
                      ++|+||||..|+||++++||     +|+|++||+++||++.+||++|+|||+|||||++||++||+|||++++|.
T Consensus         2 ~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~   76 (154)
T 1vq8_W            2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD   76 (154)
T ss_dssp             EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC
T ss_pred             EEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC
Confidence            57999999999999999999     99999999999999999999999999999999999999999999998875

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.89  E-value=7.2e-25  Score=163.16  Aligned_cols=70  Identities=44%  Similarity=0.722  Sum_probs=67.9

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFL   73 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~   73 (80)
                      +.|+||||.+|++|++++||     +++|++||+++||++.|||++|+|||+|||||++||++||+|||++++|.
T Consensus       112 ~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~  186 (270)
T 2zkr_w          112 AFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINK  186 (270)
T ss_dssp             EEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSS
T ss_pred             eEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCC
Confidence            56899999999999999999     99999999999999999999999999999999999999999999999886

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F

Probab=99.88  E-value=5.9e-25  Score=157.97  Aligned_cols=71  Identities=25%  Similarity=0.553  Sum_probs=68.3

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT   74 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~   74 (80)
                      +.++|+||+++++|+++++|     +++|+|+|++.|+++.+||++|+|||+|||||++||++||+|||++|++..
T Consensus        53 ~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~k~~~~  128 (213)
T 3jyw_F           53 VFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQ  128 (213)
T ss_dssp             CCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCCSSSCC
T ss_pred             ceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcccCCCC
Confidence            46799999999999999999     999999999999999999999999999999999999999999999998874

>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...

Probab=99.57  E-value=5.1e-15  Score=88.85  Aligned_cols=55  Identities=11%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCC
Q 047344            1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPN   55 (80)
Q Consensus         1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~   55 (80)
                      |.++.|.++||..|.+|+.++||     +++|++|++++||++.||+++|++||+|+++|
T Consensus         1 m~~~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~   60 (60)
T 1bxy_A            1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE   60 (60)
T ss_dssp             CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred             CCcEEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence            78899999999999999999999     99999999999999999999999999999875

>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...

Probab=99.30  E-value=4.2e-12  Score=75.65  Aligned_cols=53  Identities=17%  Similarity=0.029  Sum_probs=50.4

Q ss_pred             CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344            1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY   53 (80)
Q Consensus         1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~   53 (80)
                      |+++-|.++||..|.+|+.++||     +++|++|++++||++.||+++|+++|+|-|
T Consensus         1 ~~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee   58 (58)
T 3r8s_Z            1 AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE   58 (58)
T ss_dssp             CCEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred             CCeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence            57899999999999999999999     999999999999999999999999999853

>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*

Probab=99.25  E-value=3e-12  Score=75.59  Aligned_cols=49  Identities=12%  Similarity=-0.080  Sum_probs=46.8

Q ss_pred             EEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344            5 GTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY   53 (80)
Q Consensus         5 ~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~   53 (80)
                      -|.++||..|.+++.++||     +++|++|++++||++.||+++|++||+|++
T Consensus         2 kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee   55 (55)
T 2zjr_W            2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE   55 (55)
T ss_dssp             EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred             EEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence            3689999999999999999     999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1vqow1	154	d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon H	4e-10

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 50.2 bits (120), Expect = 4e-10
 Identities = 4/53 (7%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 17 PKIKKI-----LREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIY 64
            I+       +  + +   +   +    M      ++ +G P+ + +  ++ 
Sbjct: 15 TDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLA 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1vqow1	154	Archaeal L30 (L30a) {Archaeon Haloarcula marismort	99.95
d1bxya_	60	Prokaryotic ribosomal protein L30 {Thermus thermop	99.32
d2gycx1	56	Prokaryotic ribosomal protein L30 {Escherichia col	99.19
d2zjrw1	55	Prokaryotic ribosomal protein L30 {Deinococcus rad	98.44

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.95  E-value=2.1e-29  Score=172.79  Aligned_cols=70  Identities=7%  Similarity=0.093  Sum_probs=67.7

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFL   73 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~   73 (80)
                      +|||||||..++||++++||     +++|+|||+++||++.+||++|+|||||||||++||++||+|||+++.+.
T Consensus         2 ~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~   76 (154)
T d1vqow1           2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD   76 (154)
T ss_dssp             EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSC
T ss_pred             eeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCC
Confidence            69999999999999999999     99999999999999999999999999999999999999999999987763

>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=1.7e-12  Score=76.29  Aligned_cols=55  Identities=11%  Similarity=0.021  Sum_probs=52.8

Q ss_pred             CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCC
Q 047344            1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPN   55 (80)
Q Consensus         1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~   55 (80)
                      |.++.|-++||..|.+++.++||     +++|+.+++++||++.|||++|+.+|.|++.+
T Consensus         1 MaklkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Veev~   60 (60)
T d1bxya_           1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE   60 (60)
T ss_dssp             CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred             CCcEEEEEecCCCCCCHHHHHHHHHcCCCCCCCEEEeCCCHHHHHHHHhhhheeEEEEcC
Confidence            88999999999999999999999     99999999999999999999999999999753

>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=9.6e-12  Score=72.19  Aligned_cols=50  Identities=16%  Similarity=0.014  Sum_probs=47.8

Q ss_pred             EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344            4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY   53 (80)
Q Consensus         4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~   53 (80)
                      |.|.++||..|.+++.++||     +++|++|++++||++.|||++|+++|.|+|
T Consensus         2 ikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~veE   56 (56)
T d2gycx1           2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE   56 (56)
T ss_dssp             EEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEECCC
T ss_pred             EEEEEecCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheeEEeC
Confidence            56899999999999999999     999999999999999999999999999975

>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.44  E-value=7.7e-08  Score=55.20  Aligned_cols=46  Identities=13%  Similarity=-0.050  Sum_probs=43.0

Q ss_pred             EEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEE
Q 047344            6 TITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITY   51 (80)
Q Consensus         6 vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~   51 (80)
                      |-++||..|.+++.+++|     +++|+.+.+++||++.||+++|+.+|..
T Consensus         3 ItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~V   53 (55)
T d2zjrw1           3 IKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEV   53 (55)
T ss_dssp             EEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCC
T ss_pred             EEEEcCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheEEE
Confidence            567999999999999999     9999999999999999999999998853