Citrus Sinensis ID: 047352

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTKGF
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccEEEEEEEcccccccEEEEEEEEEcccccccccEEEcccccccccEEEEEEcccccEEEEEEcccccccccccEEEEEEEEcccccccEEcccccccccEEEEEEEccEEEEcccccccccccEEEEEEEEEccEEEcccccccccEEEEEEEccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccEEEEEEEEccccccEEEEEcEcccccccccccEEEEccccEEEEEEEEEEccccccccccEEEccccEEcccEEEEEEEEEEcccccEEEEccccccccEEEEEEEHHHHHcccHHHHccccccHEEEEEcccccccccccccccEEEEcccccEccccc
Coil and Loop (DISEMBL)
alnqieglcndtRLIVTRLgkwsiggdiisgtnigqnvtipriimspnesrwpfklnrrqlplapcfamTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNalefwtpyihMSILWCHFMVrgteqenqkglTSQIHILLYgrsctdsihernttftqissrgrfctkgf
Flexible Loop (DISEMBL)
alnqieglcndtrLIVTRLGKwsiggdiisgtnigqnvtIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNttftqissrgrfctkgf
Low Complexity Region (SEG)
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTKGF
Disordered region (IsUnstruct)
****IEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQI***********
Disordered Region (DISOPRED)
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTKGF
Disordered Region (DISEMBL)
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTKGF
Disordered Region (DISPRO)
****IEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTPYIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTKGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
218200559	937	hypothetical protein OsI_28021 [Oryza sa	0.494	0.096	0.688	2e-29
14140296	1573	putative helicase [Oryza sativa Japonica	0.505	0.058	0.663	2e-28
52353642	1525	unknown protein [Oryza sativa Japonica G	0.505	0.060	0.673	2e-28
55168168	1634	putative helicase [Oryza sativa Japonica	0.505	0.056	0.673	2e-28
77551837	1618	AT hook motif-containing protein, putati	0.505	0.056	0.673	2e-28
77552150	1682	AT hook motif-containing protein, putati	0.505	0.054	0.673	2e-28
77552439	1682	AT hook motif-containing protein, putati	0.505	0.054	0.673	2e-28
357455803	490	ATP-dependent DNA helicase PIF1 [Medicag	0.505	0.187	0.663	3e-27
297727649	698	Os10g0457932 [Oryza sativa Japonica Grou	0.505	0.131	0.641	5e-27
110289187	1517	expressed protein [Oryza sativa Japonica	0.505	0.060	0.641	8e-27

>gi|218200559|gb|EEC82986.1| hypothetical protein OsI_28021 [Oryza sativa Indica Group]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 72/90 (80%)

Query: 2   LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
           +NQ  GLCN TR+ +T+LG+  I   II+GTN+G  V IPRIIMSPNES+WPF L RRQ 
Sbjct: 805 INQAAGLCNGTRMTITQLGQKYIEAQIITGTNVGDKVYIPRIIMSPNESKWPFILKRRQY 864

Query: 62  PLAPCFAMTINKSQGQSLKYVGLYLPKQVF 91
           P++ CFAMTINKSQGQSL  VGLYLPKQVF
Sbjct: 865 PVSVCFAMTINKSQGQSLNKVGLYLPKQVF 894

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14140296|gb|AAK54302.1|AC034258_20 putative helicase [Oryza sativa Japonica Group] gi|31432486|gb|AAP54108.1| AT hook motif-containing protein, putative [Oryza sativa Japonica Group]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +TR GK  I  +II+GT+IG  V IP+IIMSPNE +WPF LNR+Q 
Sbjct: 1441 INQNAGLCNGTRMRITRFGKRVIEAEIITGTHIGDMVCIPQIIMSPNERKWPFVLNRKQF 1500

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQ+L  VGLYLP+QVFT+
Sbjct: 1501 PLSVCFAMTINKSQGQTLNKVGLYLPRQVFTH 1532

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52353642|gb|AAU44208.1| unknown protein [Oryza sativa Japonica Group]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +T+LGK  I   II+GT++G+ V IPRIIM+P ES WPF L RRQ 
Sbjct: 1394 INQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQY 1453

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQSL  VGLYLPKQVFT+
Sbjct: 1454 PLSVCFAMTINKSQGQSLNMVGLYLPKQVFTH 1485

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55168168|gb|AAV44035.1| putative helicase [Oryza sativa Japonica Group]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +T+LGK  I   II+GT++G+ V IPRIIM+P ES WPF L RRQ 
Sbjct: 1503 INQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQY 1562

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQSL  VGLYLPKQVFT+
Sbjct: 1563 PLSVCFAMTINKSQGQSLNMVGLYLPKQVFTH 1594

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77551837|gb|ABA94634.1| AT hook motif-containing protein, putative [Oryza sativa Japonica Group]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +T+LGK  I   II+GT++G+ V IPRIIM+P ES WPF L RRQ 
Sbjct: 1487 INQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQY 1546

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQSL  VGLYLPKQVFT+
Sbjct: 1547 PLSVCFAMTINKSQGQSLNMVGLYLPKQVFTH 1578

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77552150|gb|ABA94947.1| AT hook motif-containing protein, putative [Oryza sativa Japonica Group]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +T+LGK  I   II+GT++G+ V IPRIIM+P ES WPF L RRQ 
Sbjct: 1551 INQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQY 1610

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQSL  VGLYLPKQVFT+
Sbjct: 1611 PLSVCFAMTINKSQGQSLNMVGLYLPKQVFTH 1642

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77552439|gb|ABA95236.1| AT hook motif-containing protein, putative, expressed [Oryza sativa Japonica Group]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +T+LGK  I   II+GT++G+ V IPRIIM+P ES WPF L RRQ 
Sbjct: 1551 INQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQY 1610

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQSL  VGLYLPKQVFT+
Sbjct: 1611 PLSVCFAMTINKSQGQSLNMVGLYLPKQVFTH 1642

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455803|ref|XP_003598182.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|355487230|gb|AES68433.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 70/92 (76%)

Query: 2   LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
           ++Q EGLCN TRLIVTRL    I   II+G NIG  V IPR+ MSP+ES WPFKL RRQ 
Sbjct: 317 IDQAEGLCNGTRLIVTRLANHVIEAKIITGKNIGNRVYIPRMSMSPSESPWPFKLVRRQF 376

Query: 62  PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
           P+   FAMTINKSQGQSL +VGLYLPK VF++
Sbjct: 377 PIVVSFAMTINKSQGQSLDHVGLYLPKDVFSH 408

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297727649|ref|NP_001176188.1| Os10g0457932 [Oryza sativa Japonica Group] gi|255679464|dbj|BAH94916.1| Os10g0457932 [Oryza sativa Japonica Group]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 71/92 (77%)

Query: 2   LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
           +NQ  GLCN TR+ +TRLG   I   II+GT+ G  V IP+IIMSP E +WPF LNR+Q 
Sbjct: 566 INQSAGLCNGTRMTITRLGNKVIEAQIITGTHSGDMVCIPQIIMSPTEPKWPFMLNRKQF 625

Query: 62  PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
           PL+ CFAMTINKSQGQ+L  VGLYLP+QVFT+
Sbjct: 626 PLSVCFAMTINKSQGQTLNKVGLYLPRQVFTH 657

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110289187|gb|ABB47755.2| expressed protein [Oryza sativa Japonica Group]

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 71/92 (77%)

Query: 2    LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
            +NQ  GLCN TR+ +TRLG   I   II+GT+ G  V IP+IIMSP E +WPF LNR+Q 
Sbjct: 1385 INQSAGLCNGTRMTITRLGNKVIEAQIITGTHSGDMVCIPQIIMSPTEPKWPFMLNRKQF 1444

Query: 62   PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
            PL+ CFAMTINKSQGQ+L  VGLYLP+QVFT+
Sbjct: 1445 PLSVCFAMTINKSQGQTLNKVGLYLPRQVFTH 1476

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2184256	337	AT5G28780 "AT5G28780" [Arabido	0.505	0.272	0.576	1.6e-22
TAIR|locus:2098292	331	AT3G51690 "AT3G51690" [Arabido	0.505	0.277	0.434	4.4e-14
TAIR|locus:2098297	344	AT3G51700 "AT3G51700" [Arabido	0.434	0.229	0.468	1.4e-13

TAIR|locus:2184256 AT5G28780 "AT5G28780" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query:     3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLP 62
             NQ EGLCN TRLIVT LG+  I   I++GT+ G+ V+IPR I+SP +S  PF L R+Q P
Sbjct:   199 NQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMVSIPRFILSPPQSEHPFTLRRQQFP 258

Query:    63 LAPCFAMTINKSQGQSLKYVGLYLPKQVFTNV 94
             +  C+AMTI K+QGQSLK   LYLP  VF++V
Sbjct:   259 MRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHV 290

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098292 AT3G51690 "AT3G51690" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:     2 LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
             L+   G    TRL +TRL  + +   II+G   G+ + IPRI   P E+ +P ++ R Q 
Sbjct:   196 LDPSRGFFTGTRLQITRLCGFLLEAMIIAGNKHGKKIWIPRIASYPTETNFPLQMRRTQY 255

Query:    62 PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
             PL   FAMTI++SQ  +L  VGLYLP+QVF++
Sbjct:   256 PLKLAFAMTIDESQVHTLSKVGLYLPRQVFSH 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098297 AT3G51700 "AT3G51700" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 37/79 (46%), Positives = 54/79 (68%)

Query:    12 TRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTI 71
             TRL +TR+  + +   II+G N G+ V IPRI     E+++P K+ RRQ P+   FAMTI
Sbjct:   210 TRLQITRVETFVLEAMIITGNNHGEKVLIPRIPSDLREAKFPIKMRRRQFPVKLAFAMTI 269

Query:    72 NKSQGQSLKYVGLYLPKQV 90
             ++SQ Q+L  VG+YLP+Q+
Sbjct:   270 DESQRQTLSKVGIYLPRQL 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       182   0.00098  109 3  11 22  0.38    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.74u 0.09s 14.83t   Elapsed:  00:00:01
  Total cpu time:  14.74u 0.09s 14.83t   Elapsed:  00:00:01
  Start:  Sat May 11 04:55:21 2013   End:  Sat May 11 04:55:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF02689	818	Herpes_Helicase: Helicase; InterPro: IPR003840 Thi	99.7
KOG0987	540	consensus DNA helicase PIF1/RRM3 [Cell cycle contr	99.64
PHA03311	828	helicase-primase subunit BBLF4; Provisional	99.48
COG0507	696	RecD ATP-dependent exoDNAse (exonuclease V), alpha	99.16
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	99.07
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	98.89
PRK13826	1102	Dtr system oriT relaxase; Provisional	98.87
PRK13889	988	conjugal transfer relaxase TraA; Provisional	98.82
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	98.75
PRK10875	615	recD exonuclease V subunit alpha; Provisional	98.75
PF13538	104	UvrD_C_2: UvrD-like helicase C-terminal domain; PD	97.96
PRK13709	1747	conjugal transfer nickase/helicase TraI; Provision	97.49
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	97.09
PRK14712	1623	conjugal transfer nickase/helicase TraI; Provision	97.06
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.44
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	95.03
PRK13709	1747	conjugal transfer nickase/helicase TraI; Provision	81.82

>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms

Probab=99.70  E-value=1.2e-17  Score=160.44  Aligned_cols=60  Identities=40%  Similarity=0.475  Sum_probs=56.3

Q ss_pred             cceeeeeccceeeeeeccccccceeeEEEECCCC-CCCCCcE-EEEEeecCCCCeEEcccCc
Q 047352           56 LNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQ-VFTNVFV-KALTNLLTEKTTCSLHNAL  115 (182)
Q Consensus        56 ~~R~QfPl~la~A~TIhKsQG~Tl~~v~i~l~~~-~F~~Gq~-VAlSRv~s~~gL~l~~~~~  115 (182)
                      .++.|||+.++|||||||||||||++|+||++++ +|+|||+ |||||+++++||++..+..
T Consensus       730 ~t~~qfpi~~~~AmTIhKSQG~SL~kV~i~l~~~~~F~~gq~YVAlSRvts~~~L~i~~nPl  791 (818)
T PF02689_consen  730 CTRVQFPISSAFAMTIHKSQGQSLDKVAIDLGKPKVFSHGQLYVALSRVTSLEGLKINFNPL  791 (818)
T ss_pred             eeecCCcceeeEEEEEeHhhccccceEEEECCCCcccCCCceEEEEEeeccccccEEecCcc
Confidence            5899999999999999999999999999999998 9999999 9999999999999865544

; GO: 0004386 helicase activity, 0005524 ATP binding

>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.5e-17  Score=152.52  Aligned_cols=87  Identities=53%  Similarity=0.905  Sum_probs=83.7

Q ss_pred             CCCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceee
Q 047352            2 LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKY   81 (182)
Q Consensus         2 LDv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~   81 (182)
                      +|+..|||||||+.|+.+....+.+++++|+..|+.|.|||+.+.+++...++.+.|+|||+.+||||||||||||||.+
T Consensus       454 l~~~~gl~~~trl~it~l~~~~~~~~~~~g~r~~~~v~i~r~~~~~~~~~~~~~~~r~qfp~~~~~a~~i~ksqgqsl~~  533 (540)
T KOG0987|consen  454 LDPKGGLCNGTRLQITLLGVFLLEARIVTGSRAGKFVLIPRFDISPSDTNLPFRMRRRQFPLSLAFAMTINKSQGQSLEK  533 (540)
T ss_pred             cchhhhhhccchhhhhcccCcccceeeeecccccceEEecccccCccccCcccccccccccceeeeecccChhhhhhHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCC
Q 047352           82 VGLYLPK   88 (182)
Q Consensus        82 v~i~l~~   88 (182)
                      |++||++
T Consensus       534 v~~~l~~  540 (540)
T KOG0987|consen  534 VGLYLPR  540 (540)
T ss_pred             hcCcCCC
Confidence            9999864

>PHA03311 helicase-primase subunit BBLF4; Provisional

Probab=99.48  E-value=2.1e-14  Score=138.35  Aligned_cols=60  Identities=25%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             ceeeeeccceeeeeeccccccceeeEEEECCCC-CCCCCcE-EEEEeecCCCCeEEcccCcc
Q 047352           57 NRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQ-VFTNVFV-KALTNLLTEKTTCSLHNALE  116 (182)
Q Consensus        57 ~R~QfPl~la~A~TIhKsQG~Tl~~v~i~l~~~-~F~~Gq~-VAlSRv~s~~gL~l~~~~~~  116 (182)
                      +---|=++++|||||||||||||++|+|+++++ .|+|||+ ||+||+++++||++..+..+
T Consensus       741 tt~DYGi~~~~AmTI~KSQG~sL~~V~i~f~~~k~~~~gq~YVAlSR~~s~~~L~i~~np~~  802 (828)
T PHA03311        741 TTVDYGISSKLAMTIAKSQGLSLDKVAICFGNHKNLKLSHVYVAMSRVTSSNFLVMNLNPLR  802 (828)
T ss_pred             eecccccchhheeeehHhhCCccceEEEECCCccccccCcEEEEEEeccCccccEEecCCcc
Confidence            344588999999999999999999999999887 9999999 99999999999999877553

>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]

Probab=99.16  E-value=1.1e-11  Score=118.37  Aligned_cols=90  Identities=23%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             CCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeEE
Q 047352            4 QIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYVG   83 (182)
Q Consensus         4 v~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v~   83 (182)
                      ...|+.||..|++..+...... ++.....+|..+.+               ..+.+.++.+|||||||||||.++++|.
T Consensus       576 ~~~~vfNGdiG~~~~~~~~~~~-~~~~~~~dg~~~~~---------------~~~~~~~~~~ayA~TIHKsQGSef~~v~  639 (696)
T COG0507         576 RALGVFNGDIGVILSIVKRRQG-DVLVVDFDGREVVV---------------ARSELPELELAYAMTIHKSQGSEFDRVI  639 (696)
T ss_pred             cccceecCccceEEeeccccCc-eEEEEecCCCEEEE---------------ehhhhhhhhhheeeeEecccCCCCCeEE
Confidence            3457999999999886433222 22222223332322               2477889999999999999999999999


Q ss_pred             EECCC--CCCCCCcE-EEEEeecCCCCeE
Q 047352           84 LYLPK--QVFTNVFV-KALTNLLTEKTTC  109 (182)
Q Consensus        84 i~l~~--~~F~~Gq~-VAlSRv~s~~gL~  109 (182)
                      +.|++  ++|+-+++ ||+||++..-.|.
T Consensus       640 v~l~~~~~~l~r~l~YtAiTRar~~l~l~  668 (696)
T COG0507         640 VLLPSHSPMLSRELLYTAITRARDRLILY  668 (696)
T ss_pred             EEcCCCchhhhhhHHHHHhhhhheeEEEE
Confidence            99975  47899999 9999999987776

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=99.07  E-value=1.4e-10  Score=112.61  Aligned_cols=89  Identities=21%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|++||.+|+|+++..+.+.+++..    |..+.+|.-.               --++.+|||+|||||||+|.++|
T Consensus       620 ~~~~gv~NGd~g~V~~i~~~~i~v~~~~----G~~v~~~~~~---------------~~~l~laYA~TvHKsQGst~~~v  680 (744)
T TIGR02768       620 NRDLGVKNGMLGTVEEIEDGRLVVQLDS----GELVIIPQAE---------------YDALDHGYATTIHKSQGVTVDRA  680 (744)
T ss_pred             ccccCCcCCCEEEEEEecCCeEEEEECC----CCEEEECHHH---------------hCccCceEEeccccccCCccCcE
Confidence            5677999999999999987777666543    3455554211               12689999999999999999999


Q ss_pred             EEECCCCCCCCCcE-EEEEeecCCCCeEEccc
Q 047352           83 GLYLPKQVFTNVFV-KALTNLLTEKTTCSLHN  113 (182)
Q Consensus        83 ~i~l~~~~F~~Gq~-VAlSRv~s~~gL~l~~~  113 (182)
                      .+.. ...+...++ ||+||.+..  +.|...
T Consensus       681 iv~~-~~~l~r~llYvAiTRar~~--~~l~~~  709 (744)
T TIGR02768       681 FVLA-SKSMDRHLAYVAMTRHRES--VQLYAG  709 (744)
T ss_pred             EEec-CCccccchhhhhhhcccce--eEEEEc
Confidence            9874 558999999 999999764  455543

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=98.89  E-value=1.6e-09  Score=104.87  Aligned_cols=90  Identities=21%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CCCCCeeecceEEEEEcCCce------eeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccc
Q 047352            3 NQIEGLCNDTRLIVTRLGKWS------IGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQG   76 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~------i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG   76 (182)
                      |.+.|+.||..|+|+++..+.      +.+.+     .|+.+.++.     ++  +        -.+.+|||+|||||||
T Consensus       599 ~~~~~v~NGdiG~I~~i~~~~~~~~~~i~v~f-----~g~~v~~~~-----~~--~--------~~l~lAYAiTvHKsQG  658 (720)
T TIGR01448       599 DYNNEIFNGDLGMIVKIEGAKQGKKDQVVVDF-----DGNEVELTR-----AE--L--------FNLTLAYATSIHKSQG  658 (720)
T ss_pred             cchhccccCCeeEEEeccccccCCCceEEEEE-----CCeEEEEcH-----HH--h--------hhhhhhheeeehhccC
Confidence            456799999999999985432      22322     344443321     11  1        1588999999999999


Q ss_pred             cceeeEEEECCC---CCCCCCcE-EEEEeecCCCCeEEcccC
Q 047352           77 QSLKYVGLYLPK---QVFTNVFV-KALTNLLTEKTTCSLHNA  114 (182)
Q Consensus        77 ~Tl~~v~i~l~~---~~F~~Gq~-VAlSRv~s~~gL~l~~~~  114 (182)
                      .+.++|.+.++.   .++....+ ||++|++.  .+.|+...
T Consensus       659 Se~~~Vii~l~~~~~~~l~r~llYTAiTRAk~--~l~lvg~~  698 (720)
T TIGR01448       659 SEFPTVILPIHTAHMRMLYRNLLYTALTRAKK--RVILVGSA  698 (720)
T ss_pred             ccCCEEEEECCcccchhhhhchheeeeeeece--EEEEEECH
Confidence            999999998754   35777788 99999986  56666543

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=98.87  E-value=2.3e-09  Score=107.96  Aligned_cols=93  Identities=20%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||++|+|+++..+.+.+.+..|. .+..|.++.     ..  +        --+.++||+|||||||.|.++|
T Consensus       646 d~~lgV~NGd~GtV~~i~~~~i~v~~d~g~-~~r~V~~~~-----~~--~--------~~ldhaYA~TVHKSQGsT~d~V  709 (1102)
T PRK13826        646 EGSLGVKNGMIGKVVEAAPNRIVAEIGEGE-HRRQVTVEQ-----RF--Y--------NNLDHGYATTIHKSQGATVDRV  709 (1102)
T ss_pred             cCccCccCCCeEEEEEecCCeEEEEEcCCC-CceEEEech-----hh--c--------cchhheeeeeeecccccccceE
Confidence            456799999999999998777766654443 223343321     10  0        0278999999999999999999


Q ss_pred             EEECCCCCCCCCcE-EEEEeecCCCCeEEcc
Q 047352           83 GLYLPKQVFTNVFV-KALTNLLTEKTTCSLH  112 (182)
Q Consensus        83 ~i~l~~~~F~~Gq~-VAlSRv~s~~gL~l~~  112 (182)
                      .+..+ ..+....+ ||+||.+..-.|..-.
T Consensus       710 ~vl~s-~~ldR~llYVA~TRaR~~~~ly~~~  739 (1102)
T PRK13826        710 KVLAS-LSLDRHLTYVAMTRHREDLQLYYGR  739 (1102)
T ss_pred             EEecc-cccccchhHHhhccccceEEEEEch
Confidence            98765 46787788 9999998877666544

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=98.82  E-value=2.7e-09  Score=106.62  Aligned_cols=88  Identities=16%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||+.|+|+++..+.+.+++-    .|..|.++.     .+  +        -.+.++||+|||||||+|.++|
T Consensus       613 d~~lgV~NGd~GtV~~I~~~~i~V~~d----~gr~V~~~~-----~~--~--------~~ldlaYA~TIHKSQGsT~d~V  673 (988)
T PRK13889        613 ERGLGVKNGTLGTIEQVSAQSMSVRLD----DGRSVAFDL-----KD--Y--------DRIDHGYAATIHKAQGMTVDRT  673 (988)
T ss_pred             CCcCCEeCCCeEEEEEecCCeEEEEEC----CCeEEEecH-----HH--c--------CcccchhhhhhHHhcCCCCCeE
Confidence            456799999999999998876666653    234443321     11  0        1478999999999999999999


Q ss_pred             EEECCCCCCCCCcE-EEEEeecCCCCeEE
Q 047352           83 GLYLPKQVFTNVFV-KALTNLLTEKTTCS  110 (182)
Q Consensus        83 ~i~l~~~~F~~Gq~-VAlSRv~s~~gL~l  110 (182)
                      .+.... .+....+ ||+||.+..--|..
T Consensus       674 ~vl~~~-~~~r~l~YVAiTRar~~v~l~~  701 (988)
T PRK13889        674 HVLATP-GMDAHSSYVALSRHRDGVDLHY  701 (988)
T ss_pred             EEeccc-ccccchhHHhhhhhhheEEEEe
Confidence            887643 5666678 99999996544443

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=98.75  E-value=1.6e-08  Score=96.26  Aligned_cols=91  Identities=22%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||..|+|....+. +.+.+..+  .|+ +.++.     +.  .        -.+.+|||||||||||.++++|
T Consensus       477 d~~~gl~NGdiG~i~~~~~~-~~v~f~~~--~g~-~~~~~-----~~--l--------~~~~~ayA~TvHKSQGsef~~V  537 (586)
T TIGR01447       477 DYTLGLFNGDIGVLLRDPDG-LTVWFHFA--DGS-KAVLP-----SR--L--------PNYETAFAMTVHKSQGSEFDHV  537 (586)
T ss_pred             CcccCcCCCCeEEEEEeCCc-EEEEEEcC--CCe-EEech-----HH--c--------CccceEEEEEeeHhcCCcCCeE
Confidence            56779999999999875433 33333211  222 22211     10  0        1367899999999999999999


Q ss_pred             EEECCC---CCCCCCcE-EEEEeecCCCCeEEcccC
Q 047352           83 GLYLPK---QVFTNVFV-KALTNLLTEKTTCSLHNA  114 (182)
Q Consensus        83 ~i~l~~---~~F~~Gq~-VAlSRv~s~~gL~l~~~~  114 (182)
                      .+.++.   ++++.-.+ ||++|++.  .+.|...+
T Consensus       538 i~~l~~~~~~~l~r~llYTaiTRAk~--~l~i~~~~  571 (586)
T TIGR01447       538 ILILPNGNSPVLTRELLYTGITRAKD--QLSVWSDK  571 (586)
T ss_pred             EEECCCCCCcccccceeEEEeeehhC--eEEEEECH
Confidence            999865   45666677 99999885  56666543

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=98.75  E-value=6.7e-09  Score=99.34  Aligned_cols=94  Identities=23%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.||.||..|+|+...++.+.+.+..  ..|..+.++.     +.  .        -++.+|||||||||||.++++|
T Consensus       493 d~~~gl~NGdiG~v~~~~~~~l~v~f~~--~~g~~~~~~~-----~~--l--------~~~~~ayA~TVHKSQGsEf~~V  555 (615)
T PRK10875        493 DSALGLFNGDIGIALDRGQGELRVWFQL--PDGNIKSVQP-----SR--L--------PEHETAWAMTVHKSQGSEFDHT  555 (615)
T ss_pred             CcccCcccCceEEEeecCCCeEEEEEEC--CCCcEEEech-----Hh--c--------cccceEEEEehhhhcCCCCCeE
Confidence            5677999999999997665544444321  1233333321     10  0        1368899999999999999999


Q ss_pred             EEECCCC---CCCCCcE-EEEEeecCCCCeEEcccCc
Q 047352           83 GLYLPKQ---VFTNVFV-KALTNLLTEKTTCSLHNAL  115 (182)
Q Consensus        83 ~i~l~~~---~F~~Gq~-VAlSRv~s~~gL~l~~~~~  115 (182)
                      .+.++..   ++....+ ||++|++  +.+.|...+.
T Consensus       556 ilvlp~~~~~~l~R~LlYTaiTRAk--~~l~l~~~~~  590 (615)
T PRK10875        556 ALVLPNQFTPVVTRELVYTAITRAR--RRLSLYADER  590 (615)
T ss_pred             EEECCCccchhhhhhhHHhhhhhhh--ceEEEEeCHH
Confidence            9988753   4555667 9999998  4566665443

>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.96  E-value=3.6e-07  Score=66.36  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             eeeccceeeeeeccccccceeeEEEECCCCC-C---CCCcE-EEEEeecC
Q 047352           60 QLPLAPCFAMTINKSQGQSLKYVGLYLPKQV-F---TNVFV-KALTNLLT  104 (182)
Q Consensus        60 QfPl~la~A~TIhKsQG~Tl~~v~i~l~~~~-F---~~Gq~-VAlSRv~s  104 (182)
                      ++....+||+|||||||++++.|.+..+... +   ...++ ||+||++.
T Consensus        50 ~~~~~~~~~~Tih~akGle~d~V~v~~~~~~~~~~~~~~~lYva~TRA~~   99 (104)
T PF13538_consen   50 SYQVSHAYAMTIHKAKGLEFDAVIVVDPDSSNFDELSRRLLYVAITRAKH   99 (104)
T ss_dssp             CCTCCCCSEEETGGCTT--EEEEEEEEGGGGSGCGCHHHHHHHHHTTEEE
T ss_pred             ccccCcEEEEEhHHhcCccccEEEEEcCCcccCCchhhccEEeeHhHhhh
Confidence            3344489999999999999999999987644 2   12246 99999874

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional

Probab=97.49  E-value=0.00012  Score=77.31  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||.+++|+.+.++.|.  +..|.  |+.++      .+.+.       ..+-.+.++||.|.|+|||+|-++|
T Consensus      1347 Dk~~G~~Ng~~~tV~~I~~~~I~--l~~~~--~~~~l------~~~~~-------~~~~hlD~gYA~T~h~AQG~T~~~v 1409 (1747)
T PRK13709       1347 DRERGYVANSVWTVTAVSGDSVT--LSDGQ--QTRVI------RPGQE-------RAEQHIDLAYAITAHGAQGASETYA 1409 (1747)
T ss_pred             CcccccccCCEEEEEEEcCCeEE--EEcCC--ceEEe------cccch-------hhhhhhhhhhhhhhhhhcccccceE
Confidence            56789999999999999877643  33332  22222      11111       1223467899999999999999999


Q ss_pred             EEECC-----CCCCCCCcE-EEEEeecCCCCeEEcccCcc
Q 047352           83 GLYLP-----KQVFTNVFV-KALTNLLTEKTTCSLHNALE  116 (182)
Q Consensus        83 ~i~l~-----~~~F~~Gq~-VAlSRv~s~~gL~l~~~~~~  116 (182)
                      .+..+     ...+..-.+ ||+||.+.  .+.|...+..
T Consensus      1410 i~~~~~~~~~~~l~~~~~fYVaiSRar~--~l~IyTDd~e 1447 (1747)
T PRK13709       1410 IALEGTEGGRKQMAGFESAYVALSRMKQ--HVQVYTDNRQ 1447 (1747)
T ss_pred             EEEeccccccccccchhhhhhccccccc--ceEEEEcCHH
Confidence            87543     223444456 99999988  5666665543

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=97.09  E-value=0.0003  Score=75.24  Aligned_cols=88  Identities=11%  Similarity=0.101  Sum_probs=58.8

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||.+++|+++..+.+.+..    ..|+.+.+     .+..        ...--+-.+||.|.|+|||.|-++|
T Consensus      1401 d~~~g~~n~~~~~V~~v~~~~~~~~~----~~~~~~~l-----~~~~--------~~~~h~d~~YA~T~h~aQG~T~~~v 1463 (1960)
T TIGR02760      1401 DKNRGIKANEVYTVTQVVNGLSVQLS----KVKNSLSL-----KPIQ--------AKDKHWDYAYTRTADSAQGATYTFV 1463 (1960)
T ss_pred             CcccccccCCeEEEEEEcCCcEEEEc----CCCceEEe-----cCch--------hhhhccchhhhhhhhhhcccccceE
Confidence            56789999999999998665554442    22333333     2211        1123456799999999999999999


Q ss_pred             EEECCC--CCCCCCcE-EEEEeecCCCC
Q 047352           83 GLYLPK--QVFTNVFV-KALTNLLTEKT  107 (182)
Q Consensus        83 ~i~l~~--~~F~~Gq~-VAlSRv~s~~g  107 (182)
                      .+.++.  .....-++ ||+||.+.--.
T Consensus      1464 i~~~~s~~~l~~~~~~YVaiSRar~~~~ 1491 (1960)
T TIGR02760      1464 IALIKGRLALTNYRSAYIDLTRASHHVE 1491 (1960)
T ss_pred             EEEecchhhhhhhhhHhhhhhhcccceE
Confidence            887643  22333345 99999876533

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional

Probab=97.06  E-value=0.0011  Score=69.99  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.||+||.+.+|+.+..+.+..+  .|.   ....+     .+.+.       ...--+-++||.|.|.|||+|-+++
T Consensus      1218 D~~~G~~Ng~~~tV~~i~~~~i~l~--~g~---~~~~i-----~~~~~-------~~~~hlD~aYA~Tah~AQG~T~~~v 1280 (1623)
T PRK14712       1218 DRERGYVANSVWTVTAVSGDSVTLS--DGQ---QTRVI-----RPGQE-------RAEQHIDLAYAITAHGAQGASETFA 1280 (1623)
T ss_pred             CcccccccCceEEEEEEcCCeEEEe--cCc---eeEee-----cCccc-------chhhhhhhhhhhhhhhccCCccceE
Confidence            6678999999999999987765543  331   11111     11111       1223467899999999999998888


Q ss_pred             EEECCC----CC-CCCCcE-EEEEeecCCCCeEEcccCccc
Q 047352           83 GLYLPK----QV-FTNVFV-KALTNLLTEKTTCSLHNALEF  117 (182)
Q Consensus        83 ~i~l~~----~~-F~~Gq~-VAlSRv~s~~gL~l~~~~~~~  117 (182)
                      ....+.    .. ...-.+ ||+||.+.  .+.|..++...
T Consensus      1281 I~~~~s~~~~~~lt~~rsfYVaiSRAr~--~v~IYTDd~~~ 1319 (1623)
T PRK14712       1281 IALEGTEGNRKLMAGFESAYVALSRMKQ--HVQVYTDNRQG 1319 (1623)
T ss_pred             EEecccccchhhcccchhheeeeeeccc--eEEEEECCHHH
Confidence            664432    12 244455 99999987  77777766654

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.44  E-value=0.0019  Score=52.68  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             eeeeeccccccceeeEEEECCCC----CCC--CCcE-EEEEeecC
Q 047352           67 FAMTINKSQGQSLKYVGLYLPKQ----VFT--NVFV-KALTNLLT  104 (182)
Q Consensus        67 ~A~TIhKsQG~Tl~~v~i~l~~~----~F~--~Gq~-VAlSRv~s  104 (182)
                      -++|+|.+||+|+++|.+++...    .+.  .-++ |||||.+.
T Consensus       184 ~~~T~~e~qG~tf~~V~l~~~~~~~~~~~~~~~~~~~VALTR~~~  228 (234)
T PF01443_consen  184 RVFTVHESQGLTFDNVTLVLLSDTDNELYSESRNHLYVALTRHTK  228 (234)
T ss_pred             ceechHHcceEEeCCEEEEECCCcccccccCCcccEEEEcccccc
Confidence            48999999999999999998754    343  5577 99999875

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=95.03  E-value=0.023  Score=61.34  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=61.8

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |...||-||.+++|.++....+.++.-    .|+...+|.     +.        ...-++..+||.|.|+|||+|-+.+
T Consensus       759 ~~~~gl~ng~~~tV~~i~~~~i~l~~~----~g~~~~L~~-----~~--------~~~~~ldh~Ya~T~h~aQG~T~~~~  821 (1960)
T TIGR02760       759 HFHSRVRNGELLTVSSINNEGITLITE----DGQTLHLPH-----GA--------LEDAHLDYGYVLTPYHTQPDDAKVF  821 (1960)
T ss_pred             CcccCccCCCEEEEEEEcCCeEEEEeC----CCceEEccC-----CC--------cccccccccccCCCcccCCCcceEE
Confidence            456789999999999998776665542    233333321     11        1345778899999999999998865


Q ss_pred             EEECCCCCCCCCcE-EEEEeecCCCCeEEcccCcc
Q 047352           83 GLYLPKQVFTNVFV-KALTNLLTEKTTCSLHNALE  116 (182)
Q Consensus        83 ~i~l~~~~F~~Gq~-VAlSRv~s~~gL~l~~~~~~  116 (182)
                      .+. ...- .+.++ |++||.++  .+.|...+..
T Consensus       822 ~~~-~~~~-~~~~~~~~lsRa~~--~l~IyTd~~~  852 (1960)
T TIGR02760       822 LGV-KQYA-LSKALLNSLNRSAS--RVDLFTDLDE  852 (1960)
T ss_pred             EEe-cchh-hhHHHHHHHhhCcc--eeEEEECCHH
Confidence            443 2111 33356 99999666  6777765543

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional

Probab=81.82  E-value=1.7  Score=47.07  Aligned_cols=92  Identities=13%  Similarity=-0.003  Sum_probs=60.5

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |...||-||.+++|+++....+.++.-.   .|+.+.+|-      +.  +   ...-.|+..+||.|.|++   |-+++
T Consensus       723 d~~~~l~Ngd~~tV~~i~~~~i~l~~~~---~gk~~~L~~------~~--~---~~~~~~ldhaYa~T~~~a---t~~~~  785 (1747)
T PRK13709        723 IPGLRLKGGDRLQVTSVSEDGLTVVVPG---RAEPATLPV------DD--S---PFTALKLEHGWVETPGHS---VSDSA  785 (1747)
T ss_pred             CcccCccCCCEEEEEEecCCeEEEEECC---CceEEEeCC------cc--c---ccccCceeeeeecccccc---cCcee
Confidence            5667999999999999988877765321   233333321      10  0   011246888999999999   44666


Q ss_pred             EEECCCCCCCCCc-E-EEEEeecCCCCeEEccc
Q 047352           83 GLYLPKQVFTNVF-V-KALTNLLTEKTTCSLHN  113 (182)
Q Consensus        83 ~i~l~~~~F~~Gq-~-VAlSRv~s~~gL~l~~~  113 (182)
                      .+....+.....+ . |+++|...  .+.|..+
T Consensus       786 ~v~~~~~~~~~s~~~~v~ltrs~~--~l~IyTd  816 (1747)
T PRK13709        786 TVFASVTQRAMDNATLNGLARSGR--DVRLYSS  816 (1747)
T ss_pred             EEEEecCchhhhHHHHHHHhhccc--eEEEEcC
Confidence            6655555565444 4 99999855  7777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	99.0
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	98.86
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.99
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	91.3
3dmn_A	174	Putative DNA helicase; APC89291.2, lactobacillus p	80.07

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=99.00  E-value=2.6e-11  Score=112.94  Aligned_cols=91  Identities=25%  Similarity=0.273  Sum_probs=45.7

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeee-ccceeeeeeccccccceee
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLP-LAPCFAMTINKSQGQSLKY   81 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfP-l~la~A~TIhKsQG~Tl~~   81 (182)
                      |.+.||+||.+|+|+.+.+ .+.+.+..  ..|+.+.                +.+.++| +.++||||||||||++++.
T Consensus       488 d~~~gl~NGdiG~V~~~~~-~l~v~f~~--~dg~~~~----------------~~~~~l~~l~~~~a~TihksqG~e~~~  548 (608)
T 1w36_D          488 DSALGLFNGDIGIALDRGQ-GTRVWFAM--PDGNIKS----------------VQPSRLPEHETTWAMTVHKSQGSEFDH  548 (608)
T ss_dssp             ------------------------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSE
T ss_pred             chhhcccCCCeEEEEEcCC-eEEEEEEC--CCCcEEE----------------echHHCCccceEEEEEEEecccccCCe
Confidence            5667999999999998642 12222221  1122221                2234555 9999999999999999999


Q ss_pred             EEEECCC---CCCCCCcE-EEEEeecCCCCeEEcccC
Q 047352           82 VGLYLPK---QVFTNVFV-KALTNLLTEKTTCSLHNA  114 (182)
Q Consensus        82 v~i~l~~---~~F~~Gq~-VAlSRv~s~~gL~l~~~~  114 (182)
                      |.+.++.   +.++.+++ ||+||++.  .+.+...+
T Consensus       549 v~~~~~~~~~~~~~~~~~Yva~tRa~~--~l~l~~~~  583 (608)
T 1w36_D          549 AALILPSQRTPVVTRELVYTAVTRARR--RLSLYADE  583 (608)
T ss_dssp             EEEECCSSCCSSSCHHHHHHHHTTBSS--CEEEECCT
T ss_pred             EEEEeCCCccchhhhhhHHhhhhhhhc--eEEEEECH
Confidence            9999875   46778889 99999975  67776544

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=98.86  E-value=2.8e-10  Score=105.74  Aligned_cols=90  Identities=21%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|++||..|+|+......+.+.+     .|..+..+.               ..-.++.+|||||||||||..++.|
T Consensus       448 ~~~~~v~NGdiG~i~~~~~~~l~v~f-----dg~~v~~~~---------------~~l~~~~~ayA~TIHksQGsEfd~V  507 (574)
T 3e1s_A          448 DYNNEIFNGTLGMVLKAEGARLTVDF-----DGNVVELTG---------------AELFNLQLGYALTVHRAQGSEWGTV  507 (574)
T ss_dssp             BTTTTBCTTCEEEEEEECSSCEEEEE-----TTEEEEECG---------------GGGTTEEECSEEEHHHHTTCCEEEE
T ss_pred             CcccceecCceeEEEcCCCCEEEEEE-----CCeEEEEch---------------HHhhhhhheeeeeHHHhCCccCCeE
Confidence            45789999999999987776666655     244443321               1125788999999999999999999


Q ss_pred             EEECCC---CCCCCCcE-EEEEeecCCCCeEEcccC
Q 047352           83 GLYLPK---QVFTNVFV-KALTNLLTEKTTCSLHNA  114 (182)
Q Consensus        83 ~i~l~~---~~F~~Gq~-VAlSRv~s~~gL~l~~~~  114 (182)
                      .+.++.   ..++...+ ||++|++.  .|.++...
T Consensus       508 il~l~~~~~~~l~r~LlYvAiTRAk~--~l~lvg~~  541 (574)
T 3e1s_A          508 LGVLHEAHMPMLSRNLVYTALTRARD--RFFSAGSA  541 (574)
T ss_dssp             EEEECGGGGGGCCHHHHHHHHHTEEE--EEEEEECH
T ss_pred             EEEcCCccccccccceEEEEeeeeee--EEEEEECH
Confidence            998864   35677788 99999997  56666543

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.99  E-value=4.8e-05  Score=67.80  Aligned_cols=47  Identities=21%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             eeeeeccceeeeeeccccccceeeEEEECCCCCCCCCc-----E-EEEEeecC
Q 047352           58 RRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVF-----V-KALTNLLT  104 (182)
Q Consensus        58 R~QfPl~la~A~TIhKsQG~Tl~~v~i~l~~~~F~~Gq-----~-VAlSRv~s  104 (182)
                      +...++..+||||+|||||+.++.|.++.+...+.+.+     + ||++|++.
T Consensus       402 ~~~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~~~~~~~~~~~~yva~tRa~~  454 (459)
T 3upu_A          402 SQFSKVKALPASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGRY  454 (459)
T ss_dssp             TTBCCEEESSEEETGGGTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             HHHhhcCcEEEEEEEeccCCCCCEEEEecCCCCCcChHHHhheeeeeecceee
Confidence            33467888999999999999999999986542223222     5 99999874

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=91.30  E-value=0.025  Score=51.42  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             eeeeccccccceeeEEEECC----CCCCC--CCcE-EEEEeecCC
Q 047352           68 AMTINKSQGQSLKYVGLYLP----KQVFT--NVFV-KALTNLLTE  105 (182)
Q Consensus        68 A~TIhKsQG~Tl~~v~i~l~----~~~F~--~Gq~-VAlSRv~s~  105 (182)
                      ++|+|.+||+|++.|.+.+.    ...|+  ...+ |||||.+..
T Consensus       371 ~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~~~  415 (446)
T 3vkw_A          371 VHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHTKS  415 (446)
T ss_dssp             CEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEEEE
T ss_pred             ccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCCCE
Confidence            79999999999999998743    33453  3456 999998753

>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}

Probab=80.07  E-value=0.3  Score=37.74  Aligned_cols=40  Identities=10%  Similarity=0.164  Sum_probs=29.2

Q ss_pred             eeeeeeccccccceeeEEEECCCC-CCCC----CcE-EEEEeecCC
Q 047352           66 CFAMTINKSQGQSLKYVGLYLPKQ-VFTN----VFV-KALTNLLTE  105 (182)
Q Consensus        66 a~A~TIhKsQG~Tl~~v~i~l~~~-~F~~----Gq~-VAlSRv~s~  105 (182)
                      -..+|+|+|||+-++.|.+..... .|..    ..+ ||++|++..
T Consensus       102 v~v~t~~~~KGlEf~~V~~~~~~~~~~~~~~~~~llYva~TRA~~~  147 (174)
T 3dmn_A          102 VIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHE  147 (174)
T ss_dssp             EEEEEGGGCTTCCEEEEEEETCBTTTSCSGGGHHHHHHHHTTEEEE
T ss_pred             eEEEEccccCCcCCCEEEEecCCcccCCChhhhceeEEEecCcccE
Confidence            457899999999999999875432 2322    235 999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1w36d2	246	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.74
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.14
d1uaaa2	333	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.51

>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=3.1e-10  Score=92.80  Aligned_cols=93  Identities=25%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             CCCCCeeecceEEEEEcCCceeeEEEeecCcCceEEEeeeEEeccCCCCCccccceeeeeccceeeeeeccccccceeeE
Q 047352            3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTINKSQGQSLKYV   82 (182)
Q Consensus         3 Dv~~GLcNGTRgvV~~l~~~~i~~~iitg~~~G~~V~IpRi~l~~s~~~~~~~~~R~QfPl~la~A~TIhKsQG~Tl~~v   82 (182)
                      |.+.|+.||.+|+|+++.+.. .+.+.  ...|..+.++     +..  .        -.+.+|||||||||||.+.+.|
T Consensus       128 d~~~~v~NGd~g~v~~~~~~~-~~~~~--~~~~~~~~~~-----~~~--l--------~~~~~ayA~TiHkaQGse~~~v  189 (246)
T d1w36d2         128 DSALGLFNGDIGIALDRGQGT-RVWFA--MPDGNIKSVQ-----PSR--L--------PEHETTWAMTVHKSQGSEFDHA  189 (246)
T ss_dssp             --------------------------------------C-----CSC--C--------CSCSSCSEEETTTTTTCCBSEE
T ss_pred             CcccccccccceEEEecCCCc-EEEEE--ecCCcEEEee-----hHh--c--------hhhhhheeccHHHhccCCCCcc
Confidence            567789999999998764432 11111  1122222221     111  1        1478999999999999999999


Q ss_pred             EEECCCC---CCCCCcE-EEEEeecCCCCeEEcccCc
Q 047352           83 GLYLPKQ---VFTNVFV-KALTNLLTEKTTCSLHNAL  115 (182)
Q Consensus        83 ~i~l~~~---~F~~Gq~-VAlSRv~s~~gL~l~~~~~  115 (182)
                      .+.++..   +++.-.+ ||+||++  +.+.|...+.
T Consensus       190 ~~~l~~~~~~~~~r~l~YtaiTRAk--~~~~l~~~~~  224 (246)
T d1w36d2         190 ALILPSQRTPVVTRELVYTAVTRAR--RRLSLYADER  224 (246)
T ss_dssp             EEECCSSCCSSSCHHHHHHHHTTBS--SCEEEECCTT
T ss_pred             eeccCcccccccchhhHHHHHhhhh--CeEEEEECHH
Confidence            9988642   3444556 9999998  5566665443

>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.51  E-value=0.048  Score=41.90  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             eeeeeeccccccceeeEEEE-CCCCCCCCC-------------cE-EEEEeecCC
Q 047352           66 CFAMTINKSQGQSLKYVGLY-LPKQVFTNV-------------FV-KALTNLLTE  105 (182)
Q Consensus        66 a~A~TIhKsQG~Tl~~v~i~-l~~~~F~~G-------------q~-VAlSRv~s~  105 (182)
                      =+-||||+|+|+-.+.|.+. +..+.|.+.             -+ ||++|++..
T Consensus       245 V~l~TiH~sKGlE~~~V~i~g~~~~~~p~~~~~~~~~leEerRL~YVA~TRA~~~  299 (333)
T d1uaaa2         245 VQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKE  299 (333)
T ss_dssp             EEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEE
T ss_pred             EEEeehhhhhccCCCeeEecCcccCCCcccccCCcccHHHHHHHhHhhHHHHhhe
Confidence            34699999999999998754 445556432             13 888888764