Citrus Sinensis ID: 047353

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-
MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPKGGTEGEEVSECSQESAGVAHTHSAGNVVLQTRDQFIFSEESCPGKDRSSSPASCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVPISESDRTSSSQAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPSVEVKQEAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLARDFSRLDVMFDDGGANKASLLSPSSNQKRNSGSFIEDKENLSGGQEKDKDIIVKDKTSEKDFDGSNSQENMKPKTVDTDSKTKIDADAASETVKKPASILVEHNMNDLLFSPDQVGSKANRALGSLARTPRTQYCKGFGVTANQGFSSEQSPRNTSSPAVCKRSNESSAGAVASVQAIPSLALTGETTTTAGNDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENESSHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGCR
cccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHccccHHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHcccccccHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccc
cccccccccccHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHEHHHHcccccccHHHHHHHHccccccccccccccccHHEHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEcccccccccccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHEEccccccccccccccccccccccccccccHHHHccc
mltlsanchicnQEDEIIIELVNkygpkkwstiaqhlpgrigkqcRERTDNAIKNHWNSSVKKKLDSYLASGLLeqfqglplvghqnqplpsssqrmqssgdescpkggtegeevsecsqesagvahthsagnvvlQTRDQfifseescpgkdrssspascteqYYTSLedvtfsipeipceagcsskfpeqsfvnnagsfastpyqfnlqdvsnfsalelghqsaglpahcissheghevanvpfqssmglsvpssagnlaagsakpenmlisddECCRVLFAEAMKDgcfslenlpqglniVDSLLCrsldvpisesdrtsssqafcplrpellgtscsqsflsgpmlllpddsgflygrepsqlnchsygtqeqelntngqagfictnestnspcddgtdnsglqessylpkdslklvpintfgsgadamiscpsvevKQEAQteqqdsgalcyepprfpsldipffscdliqsGNDMLQEYSPLGIRQLMSsmncitpfrlwdspsrdgspEAVLKSAAktftgtpsilkkrnrdllsplsdrrndkkLETDLTSclardfsrldvmfddggankasllspssnqkrnsgsfiedkenlsggqekdkdiivkdktsekdfdgsnsqenmkpktvdtdsktkidadaasetvkkpASILVEHNmndllfspdqvgsKANRALgslartprtqyckgfgvtanqgfsseqsprntsspavckrsnessagavasvqaipslaltgettttagndagtenynifgetpfkrsiespsawkspwfinsfvpgprvdteisiedigyfmspgdrsyDALGLMKQLSEHTAAAYADALEvlggessetlvnernskspsmdqgiehlpenenesshldsnvmmerrtldfsecgtpakgtetrksltgvnfsspssyllkgcr
mltlsanchicnQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNaiknhwnssvKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPKGGTEGEEVSECSQESAGVAHTHSAGNVVLQTRDQFIFSEEscpgkdrssspaSCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVPisesdrtsssqAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPSVEVKQEAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSPSRDGSPEAVLKSAaktftgtpsilkkrnrdllsplsdrrndkkletdltsclardfSRLDVMFDDGGAnkasllspssnqkrnsgsfiedkenlsggqekdkdiivkdktsekdfdgsnsqenmkpktvdtdsktkidadaasetvkKPASILVEHNMNDLLFSPDQVGSKANRALGSLARTPRTQYCKGFGVTAnqgfsseqsprntsspAVCKRSNESSAGAVASVQAIPSLaltgettttagndagtenyNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENESSHLDSNVMMERRTLDfsecgtpakgtetrksltgvnfsspssyllkgcr
MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPKGGTEGEEVSECSQESAGVAHTHSAGNVVLQTRDQFIFSEESCPGKDRSSSPASCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVPISESDRTSSSQAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPSVEVKQEAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLARDFSRLDVMFDDGGANKASLLSPSSNQKRNSGSFIEDKENLSGGQEKDKDIIVKDKTSEKDFDGSNSQENMKPKTVDTDSKTKIDADAASETVKKPASILVEHNMNDLLFSPDQVGSKANRALGSLARTPRTQYCKGFGVTANQGFSSEQSPRNTSSPAVCKRSNESSAGAVASVQAIPSlaltgettttagndagtenYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENESSHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGCR
****SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLV**************************************************VVLQTRDQFIF******************EQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCI**************************************LISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVP************FCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGRE***LNCH***************GFIC*****************************KLVPINTFGSGADAMI*******************ALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLW***************************************************TSCLARDFSRLDVMF*************************************************************************************************LL**********************TQYCKGFGV*********************************************************ENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVL**********************************************************************************
*LTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSY********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RFPSLDIPFFSC*******************************************************G******************************************************************************************************************************VKKPASILVEHNMNDLLFS*********************************************************************************NDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEV*****************************************MMERRTLDFSECG**********************YLLKGCR
MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQ*****************************************THSAGNVVLQTRDQFIFSEE***************EQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVP**********QAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPS**************GALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSP********VLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLARDFSRLDVMFDDGGANKASLL***********SFIEDKENLSGGQEKDKDIIVKDKTSEKDFDGSNSQENMKPKTVDTDSKTKIDADAASETVKKPASILVEHNMNDLLFSPDQVGSKANRALGSLARTPRTQYCKGFGVTANQG***************************ASVQAIPSLALTGETTTTAGNDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGES******************IEHLPENENESSHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGCR
***LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPKG*TEGEE*************************************************QY*TSLEDVTFSIPEIPCEA*C*S**************************S*****E****S********************************************************************L*NLPQGLNIVD*LL****************************************************GREPSQL*C*S***QEQ****************************************************************************ALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLS**********************************************************************************************************S*TVKKPASILVEHNMNDLLFSPDQVG*K******SL*********KGFGVTAN**************************GAVASVQAIPSLALTGETTTTAGNDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGE*******************************H**SNVMMERRTLDFSECGT****************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPKGGTEGEEVSECSQESAGVAHTHSAGNVVLQTRDQFIFSEESCPGKDRSSSPASCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVDSLLCRSLDVPISESDRTSSSQAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPSVEVKQEAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLMSSMNCITPFRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLARDFSRLDVMFDDGGANKASLLSPSSNQKRNSGSFIEDKENLSGGQEKDKDIIVKDKTSEKDFDGSNSQENMKPKTVDTDSKTKIDADAASETVKKPASILVEHNMNDLLFSPDQVGSKANRALGSLARTPRTQYCKGFGVTANQGFSSEQSPRNTSSPAVCKRSNESSAGAVASVQAIPSLALTGETTTTAGNDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVPGPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENESSHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGCR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query921 2.2.26 [Sep-21-2011]
Q9S7G7776 Myb-related protein 3R-1 no no 0.580 0.689 0.425 1e-110
P51960751 Myb-related protein A OS= yes no 0.066 0.081 0.386 3e-13
P10243752 Myb-related protein A OS= yes no 0.066 0.081 0.386 4e-13
P52550757 Myb-related protein A OS= yes no 0.065 0.079 0.390 5e-13
Q05935728 Myb-related protein A OS= N/A no 0.058 0.074 0.412 5e-13
P10242640 Transcriptional activator no no 0.058 0.084 0.402 5e-13
P46200640 Transcriptional activator no no 0.058 0.084 0.402 6e-13
P06876636 Transcriptional activator no no 0.058 0.084 0.402 6e-13
P01103641 Transcriptional activator no no 0.058 0.084 0.402 7e-13
Q08759624 Transcriptional activator N/A no 0.056 0.083 0.410 7e-13
>sp|Q9S7G7|MB3R1_ARATH Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/625 (42%), Positives = 341/625 (54%), Gaps = 90/625 (14%)

Query: 13  QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER------------------------ 48
           +ED  II+LV KYGPKKWSTI+QHLPGRIGKQCRER                        
Sbjct: 93  EEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEEELTLIR 152

Query: 49  -------------------TDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQP 89
                              +DN+IKNHWNSSVKKKLDSY ASGLL+Q Q  PL+  QN+ 
Sbjct: 153 AHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYYASGLLDQCQSSPLIALQNKS 212

Query: 90  LPSSSQRMQSSGDESCPKGGTEGEEVSECSQESAGVAH-THSAGNVVLQTRDQFIFSEES 148
           + SSS  M S+GDE   + G + EE SECSQ S   +  T+   + V +  +++   E  
Sbjct: 213 IASSSSWMHSNGDEGSSRPGVDAEE-SECSQASTVFSQSTNDLQDEVQRGNEEYYMPEFH 271

Query: 149 CPGKDRSSSPASCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQF 208
              + + S+ AS  E YY S +DV   +PEI CE  CS KF  Q+   +     +T  + 
Sbjct: 272 SGTEQQISNAASHAEPYYPSFKDVKIVVPEISCETECSKKF--QNLNCSHELRTTTATED 329

Query: 209 NLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKP 268
            L  VSN +  + G +   L  H + +   ++     FQSS+ L   S    L+     P
Sbjct: 330 QLPGVSNDAKQDRGLE---LLTHNMDNGGKNQALQQDFQSSVRL---SDQPFLSNSDTDP 383

Query: 269 E-NMLISDDECCRVLFAEAMKDGCFSLENLPQGLNIVD------SLLCRSLDVPISESDR 321
           E   LI+D+ECCRVLF + MKD   S  +  QG N+VD      SL  ++ +    E+ +
Sbjct: 384 EAQTLITDEECCRVLFPDNMKDS--STSSGEQGRNMVDPQNGKGSLCSQAAETHAHETGK 441

Query: 322 TSSSQAFCPLRPE----LLGTSCS---QSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGT 374
             +     P  P     L G +C     S L   +L   D +  + G       C  +G 
Sbjct: 442 VPA----LPWHPSSSEGLAGHNCVPLLDSDLKDSLLPRNDSNAPIQG-------CRLFGA 490

Query: 375 QEQELNTNGQAGFICTNESTNSPCDDGTDNSGLQES---SYLPKDSLKLVPINTFGSGAD 431
            E E  T+   GFI T     S  +D  DN G  E    SY+PKDSLKLVP+N+F S + 
Sbjct: 491 TELECKTDTNDGFIDTYGHVTSHGND--DNGGFPEQQGLSYIPKDSLKLVPLNSFSSPSR 548

Query: 432 AMISCPSVEVKQEAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIR 491
                  +    + +  ++D GALCYEPPRFPS DIPFFSCDL+ S +D+ QEYSP GIR
Sbjct: 549 VN----KIYFPIDDKPAEKDKGALCYEPPRFPSADIPFFSCDLVPSNSDLRQEYSPFGIR 604

Query: 492 QLM-SSMNCITPFRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRND 550
           QLM SSMNC TP RLWDSP  D SP+ +L   AK+F+G PSILKKR+RDLLSP+ DRR D
Sbjct: 605 QLMISSMNCTTPLRLWDSPCHDRSPDVMLNDTAKSFSGAPSILKKRHRDLLSPVLDRRKD 664

Query: 551 KKLETDLTSCLARDFSRLDVMFDDG 575
           KKL+   TS LA DFSRLDVM D+G
Sbjct: 665 KKLKRAATSSLANDFSRLDVMLDEG 689

Arabidopsis thaliana (taxid: 3702)
>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2 Back     alignment and function description
>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2 Back     alignment and function description
>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1 Back     alignment and function description
>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1 Back     alignment and function description
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2 Back     alignment and function description
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2 Back     alignment and function description
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query921
255551038 1046 myb, putative [Ricinus communis] gi|2235 0.960 0.846 0.575 0.0
224092320 1027 predicted protein [Populus trichocarpa] 0.946 0.849 0.565 0.0
224143004 1027 predicted protein [Populus trichocarpa] 0.942 0.845 0.563 0.0
359476374 1051 PREDICTED: myb-related protein 3R-1-like 0.958 0.840 0.537 0.0
356518318999 PREDICTED: myb-related protein 3R-1-like 0.919 0.847 0.483 0.0
356507885998 PREDICTED: myb-related protein 3R-1-like 0.914 0.843 0.474 0.0
16326135 1042 Myb [Nicotiana tabacum] 0.963 0.851 0.462 0.0
356565788992 PREDICTED: myb-related protein 3R-1-like 0.904 0.839 0.457 0.0
3565545251004 PREDICTED: myb-related protein 3R-1-like 0.913 0.837 0.456 0.0
449465147999 PREDICTED: myb-related protein 3R-1-like 0.913 0.841 0.444 0.0
>gi|255551038|ref|XP_002516567.1| myb, putative [Ricinus communis] gi|223544387|gb|EEF45908.1| myb, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/974 (57%), Positives = 680/974 (69%), Gaps = 89/974 (9%)

Query: 13   QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER------------------------ 48
            +EDE IIELVNKYGPKKWSTIAQHLPGRIGKQCRER                        
Sbjct: 97   EEDETIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQQEELALIR 156

Query: 49   -------------------TDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQP 89
                               TDN+IKNHWNSSVKKKLDSYLASGLLEQFQGLPLV HQ  P
Sbjct: 157  AHQIYGNRWAELTKFLPGRTDNSIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVPHQ--P 214

Query: 90   LPSSSQRMQSSGDESCPKGGTEGEEVSECSQES--AGVAHTHSA-GNVVLQTRDQFIFSE 146
            +PSSS R+QSSGD+S  K G + EE+SECSQES  AG + + S  GN VL +R++F  +E
Sbjct: 215  MPSSSSRVQSSGDDSGFKCGIDAEEISECSQESIVAGCSQSMSGLGNAVLPSREEFHLTE 274

Query: 147  ESCPGKDRSSSPASCTEQYYTSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPY 206
            ES   K+RSSSPASC+EQY+TS+ DVTFS+PEIPCE  CSS F  Q+F +N  + AS  Y
Sbjct: 275  ESGLKKERSSSPASCSEQYFTSVGDVTFSVPEIPCEMACSSNFLHQNFSSNTITPASNDY 334

Query: 207  QFNLQDVSNFSALELGHQSAGLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSA 266
            Q+N+Q++ + S+LELGH S+GLP HC++ +E H++ NVPFQSSMG SVP++ GN+   SA
Sbjct: 335  QYNIQELPSVSSLELGHDSSGLPTHCMTPNESHDMVNVPFQSSMGFSVPAAMGNITENSA 394

Query: 267  KPENMLISDDECCRVLFAEAMKDGCFSLENLPQGLNI---VDSLLCRSLDVPISESDRTS 323
            KP++M I+DDECC+ LF+EAM    FS  N  +G N    +DS   +S++  I E+++  
Sbjct: 395  KPDHMFITDDECCQFLFSEAMNGAIFS-GNFMKGSNSIANIDSSSYQSINNQIPETEKV- 452

Query: 324  SSQAFCPLRPELLGTSCSQSFLSGPMLLLPDDSGFLYGREPSQLNCHSYGTQEQELNTNG 383
             SQ     +  LL TSCS+S  +G  LL  DD+     R P+QL  H++   EQE  T+ 
Sbjct: 453  -SQPVNSSKSALLVTSCSRSLPAGHSLLSADDTSIRCDRAPNQLTGHTFAAHEQEYITSA 511

Query: 384  QAGFICTNESTNSPCDDGTDNSGLQESSYLPKDSLKLVPINTFGSGADAMISCPSVEVKQ 443
              GFI TN + +SP DDGT+N+ +QE  YL K+  KLVP+NTF +  D   SCP  E+  
Sbjct: 512  NDGFIYTNGTVSSPYDDGTENTNMQEQHYL-KEPSKLVPVNTFTASNDTGKSCPVDEIN- 569

Query: 444  EAQTEQQDSGALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQL-MSSMNCITP 502
             AQTEQQD+GALCYEPPRFPSLDIPF SC+LIQS ND+ QEYSPLGIRQL MSSMNCITP
Sbjct: 570  -AQTEQQDAGALCYEPPRFPSLDIPFLSCELIQSSNDIQQEYSPLGIRQLMMSSMNCITP 628

Query: 503  FRLWDSPSRDGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLA 562
            FRLWDSPSRD SP AVLK+AAKTFT TPSILKKRNRDLLSPLSDRR DKKLE D+TS L 
Sbjct: 629  FRLWDSPSRDDSPNAVLKTAAKTFT-TPSILKKRNRDLLSPLSDRRLDKKLEIDMTSSLT 687

Query: 563  RDFSRLDVMFDDGGANKASLLSPSSNQKRNSGSFIEDKEN----LSGGQEKDKD--IIVK 616
            ++FSRLDVM D+   +K S+LSPSS+ K+N     EDKEN    L  GQEK +D      
Sbjct: 688  KEFSRLDVMLDENETHKTSVLSPSSSHKKN-----EDKENMDPALEVGQEKGRDCSTFTD 742

Query: 617  DKTSEKDFDGSNSQENMKPKTVDTDSKTKIDADAASETVKKPASILVEHNMNDLLFSPDQ 676
             K SEKD   S++Q++ K  TVD D+KTK+  DA+S+    P+ + VE +MNDLLF   +
Sbjct: 743  HKMSEKDCGSSDTQDSTKHGTVDDDAKTKVHTDASSQI---PSGVHVEDSMNDLLFFSPE 799

Query: 677  VGSKANRALGSLARTPRTQYCKGFGVTANQGFSSEQSPRNT----SSPAVCKRSNESSAG 732
            VG K++RA G  +RTP+    +  G  +  G +SE S  N+    SSP + K+++ES   
Sbjct: 800  VGLKSDRAFGPSSRTPKNFCRRILGTLSEHGIASESSSGNSCFVVSSPTISKKNHESHLV 859

Query: 733  AVASVQ-AIPSLALTGETTTTAGNDAGTENYNIFGETPFKRSIESPSAWKSPWFINSFVP 791
            A  SVQ ++PS          AGNDAGTEN +IFGETPFKRSIESPSAWKSPWFINSF+P
Sbjct: 860  ASTSVQSSVPS----ENAVDNAGNDAGTENLSIFGETPFKRSIESPSAWKSPWFINSFLP 915

Query: 792  GPRVDTEISIEDIGYFMSPGDRSYDALGLMKQLSEHTAAAYADALEVLGGESSETLVNER 851
            GPRVDT+ISIEDIGYFMSPGDRSYDA+ LMKQLSEHTA+A+ADALEVLG E+ ET++ +R
Sbjct: 916  GPRVDTDISIEDIGYFMSPGDRSYDAIALMKQLSEHTASAFADALEVLGNETPETILEKR 975

Query: 852  NSKSPSMDQ----GIEHLPENENESSHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGV 907
             S   +M+Q         PEN    SHL SN+  E RTLDFSECGTP KGTE  KS T +
Sbjct: 976  RSSIQNMNQENNGATNSEPENH---SHLASNISTECRTLDFSECGTPGKGTERGKSSTAI 1032

Query: 908  NFSSPSSYLLKGCR 921
             FSSPSSYLLKGCR
Sbjct: 1033 IFSSPSSYLLKGCR 1046

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092320|ref|XP_002309557.1| predicted protein [Populus trichocarpa] gi|222855533|gb|EEE93080.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224143004|ref|XP_002324814.1| predicted protein [Populus trichocarpa] gi|222866248|gb|EEF03379.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476374|ref|XP_002281528.2| PREDICTED: myb-related protein 3R-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518318|ref|XP_003527826.1| PREDICTED: myb-related protein 3R-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356507885|ref|XP_003522693.1| PREDICTED: myb-related protein 3R-1-like [Glycine max] Back     alignment and taxonomy information
>gi|16326135|dbj|BAB70511.1| Myb [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356565788|ref|XP_003551119.1| PREDICTED: myb-related protein 3R-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356554525|ref|XP_003545596.1| PREDICTED: myb-related protein 3R-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449465147|ref|XP_004150290.1| PREDICTED: myb-related protein 3R-1-like [Cucumis sativus] gi|449511745|ref|XP_004164042.1| PREDICTED: myb-related protein 3R-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query921
TAIR|locus:2125712995 PC-MYB1 [Arabidopsis thaliana 0.608 0.562 0.418 8.8e-155
TAIR|locus:2144216961 MYB3R-4 "myb domain protein 3r 0.491 0.471 0.349 4.3e-97
TAIR|locus:2083599510 MYB3R-3 "myb domain protein 3r 0.052 0.094 0.634 1e-13
TAIR|locus:2180157548 MYB3R-5 "myb domain protein 3r 0.051 0.085 0.607 3.1e-12
UNIPROTKB|F1N9K7176 MYBL1 "Myb-related protein A" 0.051 0.267 0.647 3.8e-11
UNIPROTKB|F1MDK5640 MYB "Transcriptional activator 0.051 0.073 0.647 8.6e-10
UNIPROTKB|P46200640 MYB "Transcriptional activator 0.051 0.073 0.647 8.6e-10
UNIPROTKB|E9PLZ5603 MYB "Transcriptional activator 0.051 0.077 0.647 1.2e-09
RGD|1306940691 Mybl1 "myeloblastosis oncogene 0.161 0.215 0.329 2.4e-09
UNIPROTKB|E9PMQ0299 MYB "Transcriptional activator 0.051 0.157 0.647 2.6e-09
TAIR|locus:2125712 PC-MYB1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 972 (347.2 bits), Expect = 8.8e-155, Sum P(3) = 8.8e-155
 Identities = 253/604 (41%), Positives = 334/604 (55%)

Query:    48 RTDNAIKNHWNSSVKKKLDSYLASGLLEQFQGLPLVGHQNQPLPSSSQRMQSSGDESCPK 107
             R+DN+IKNHWNSSVKKKLDSY ASGLL+Q Q  PL+  QN+ + SSS  M S+GDE   +
Sbjct:   171 RSDNSIKNHWNSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSR 230

Query:   108 GGTEGEEVSECSQESAGVAH-THSAGNVVLQTRDQFIFSEESCPGKDRSSSPASCTEQYY 166
              G + EE SECSQ S   +  T+   + V +  +++   E     + + S+ AS  E YY
Sbjct:   231 PGVDAEE-SECSQASTVFSQSTNDLQDEVQRGNEEYYMPEFHSGTEQQISNAASHAEPYY 289

Query:   167 TSLEDVTFSIPEIPCEAGCSSKFPEQSFVNNAGSFASTPYQFNLQDVSNFSALELGHQSA 226
              S +DV   +PEI CE  CS KF   +  +   +  +T  Q  L  VSN +  + G +  
Sbjct:   290 PSFKDVKIVVPEISCETECSKKFQNLNCSHELRTTTATEDQ--LPGVSNDAKQDRGLE-- 345

Query:   227 GLPAHCISSHEGHEVANVPFQSSMGLSVPSSAGNLAAGSAKPE-NMLISDDECCRVLFAE 285
              L  H + +   ++     FQSS+ LS      N       PE   LI+D+ECCRVLF +
Sbjct:   346 -LLTHNMDNGGKNQALQQDFQSSVRLSDQPFLSN---SDTDPEAQTLITDEECCRVLFPD 401

Query:   286 AMKDGCFSLENLPQGLNIVD------SLLCRSLDVPISESDRTSSSQAFCPLRPE-LLGT 338
              MKD   S  +  QG N+VD      SL  ++ +    E+ +  +   + P   E L G 
Sbjct:   402 NMKDS--STSSGEQGRNMVDPQNGKGSLCSQAAETHAHETGKVPALP-WHPSSSEGLAGH 458

Query:   339 SCSQSFLSGPML--LLP-DDSGFLYGREPSQLNCHSYGTQEQELNTNGQAGFICTNESTN 395
             +C    L   +   LLP +DS       P Q  C  +G  E E  T+   GFI T     
Sbjct:   459 NCVP-LLDSDLKDSLLPRNDSN-----APIQ-GCRLFGATELECKTDTNDGFIDTYGHVT 511

Query:   396 SPCDDGTDNSGLQES---SYLPKDSLKLVPINTFGSGADAMISCPSVEVKQEAQTEQQDS 452
             S  +D  DN G  E    SY+PKDSLKLVP+N+F S   + ++   +    + +  ++D 
Sbjct:   512 SHGND--DNGGFPEQQGLSYIPKDSLKLVPLNSFSS--PSRVN--KIYFPIDDKPAEKDK 565

Query:   453 GALCYEPPRFPSLDIPFFSCDLIQSGNDMLQEYSPLGIRQLM-SSMNCITPFRLWDSPSR 511
             GALCYEPPRFPS DIPFFSCDL+ S +D+ QEYSP GIRQLM SSMNC TP RLWDSP  
Sbjct:   566 GALCYEPPRFPSADIPFFSCDLVPSNSDLRQEYSPFGIRQLMISSMNCTTPLRLWDSPCH 625

Query:   512 DGSPEAVLKSAAKTFTGTPSILKKRNRDLLSPLSDRRNDKKLETDLTSCLARDFSRLDVM 571
             D SP+ +L   AK+F+G PSILKKR+RDLLSP+ DRR DKKL+   TS LA DFSRLDVM
Sbjct:   626 DRSPDVMLNDTAKSFSGAPSILKKRHRDLLSPVLDRRKDKKLKRAATSSLANDFSRLDVM 685

Query:   572 FDDGGANKASLLSPSSNQKR--NSGSFIEDKENLSGGQEKDKDIIVKDKTSEK-DFDGSN 628
              D+G     S  S S   K    S S   D  N +  +   + I + ++  E  +  G  
Sbjct:   686 LDEGDDCMTSRPSESPEDKNICASPSIARDNRNCASARLYQEMIPIDEEPKETLESGGVT 745

Query:   629 SQEN 632
             S +N
Sbjct:   746 SMQN 749
GO:0003677 "DNA binding" evidence=IEA;TAS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA
GO:0003713 "transcription coactivator activity" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
TAIR|locus:2144216 MYB3R-4 "myb domain protein 3r-4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083599 MYB3R-3 "myb domain protein 3r-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180157 MYB3R-5 "myb domain protein 3r-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9K7 MYBL1 "Myb-related protein A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDK5 MYB "Transcriptional activator Myb" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P46200 MYB "Transcriptional activator Myb" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PLZ5 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306940 Mybl1 "myeloblastosis oncogene-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PMQ0 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query921
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 8e-14
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-11
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-11
PLN03091459 PLN03091, PLN03091, hypothetical protein; Provisio 5e-06
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 1e-05
COG5147512 COG5147, REB1, Myb superfamily proteins, including 3e-04
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 3e-04
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 8e-04
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information 
 Score = 66.0 bits (162), Expect = 8e-14
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 8/47 (17%)

Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNS 59
          +EDE++IE V K+G   WS IA+HLPGR   QC        KN WN+
Sbjct: 7  EEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQC--------KNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 921
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.63
PLN03091459 hypothetical protein; Provisional 99.48
PLN03212249 Transcription repressor MYB5; Provisional 99.48
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.06
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.77
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.73
PLN03212249 Transcription repressor MYB5; Provisional 98.69
PLN03091459 hypothetical protein; Provisional 98.62
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.57
KOG0048238 consensus Transcription factor, Myb superfamily [T 98.53
KOG0049939 consensus Transcription factor, Myb superfamily [T 98.31
KOG0049939 consensus Transcription factor, Myb superfamily [T 97.13
COG5147512 REB1 Myb superfamily proteins, including transcrip 97.12
KOG0051607 consensus RNA polymerase I termination factor, Myb 96.88
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 96.7
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.27
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 96.22
COG5147512 REB1 Myb superfamily proteins, including transcrip 95.01
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 94.54
KOG1279506 consensus Chromatin remodeling factor subunit and 94.34
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 93.78
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 93.46
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 93.15
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 91.37
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 91.0
KOG0051607 consensus RNA polymerase I termination factor, Myb 89.75
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 87.39
PRK13923170 putative spore coat protein regulator protein YlbO 87.04
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 80.82
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=99.63  E-value=1.3e-16  Score=165.52  Aligned_cols=63  Identities=35%  Similarity=0.538  Sum_probs=61.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccccC-------------------------------------
Q 047353            7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRER-------------------------------------   48 (921)
Q Consensus         7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp-GRTgKQCReR-------------------------------------   48 (921)
                      ||+||+|||++|+.+|++||+++|..||+.++ ||+|||||+|                                     
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA   88 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIA   88 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHH
Confidence            69999999999999999999999999999999 9999999999                                     


Q ss_pred             ------CchhhhhhCcHHHHhHhhhhh
Q 047353           49 ------TDNAIKNHWNSSVKKKLDSYL   69 (921)
Q Consensus        49 ------TDNaIKNrWns~lKKKL~k~~   69 (921)
                            |||+||||||++||||+.++.
T Consensus        89 ~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   89 GRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             hhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence                  999999999999999998876

>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query921
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 1e-13
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 1e-13
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 1e-13
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 1e-13
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 5e-13
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 2e-11
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 5e-11
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 7e-11
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 4e-06
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 9e-06
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 3e-05
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 43/96 (44%)
Query: 13  QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
           +ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRE                         
Sbjct: 10  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69
Query: 48  ------------------RTDNAIKNHWNSSVKKKL 65
                             RTDNAIKNHWNS++++K+
Sbjct: 70  AHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query921
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 9e-28
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 4e-27
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-04
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 1e-26
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 7e-25
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-24
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 6e-13
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-22
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 7e-20
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-19
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 1e-18
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-17
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-10
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 9e-09
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-08
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 2e-08
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 3e-07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 7e-05
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-04
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 3e-04
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 5e-04
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 6e-04
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
 Score =  107 bits (269), Expect = 9e-28
 Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 43/96 (44%)

Query: 13  QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER------------------------ 48
           +ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRER                        
Sbjct: 10  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69

Query: 49  -------------------TDNAIKNHWNSSVKKKL 65
                              TDNAIKNHWNS++++K+
Sbjct: 70  AHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query921
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.48
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.43
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.43
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.43
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.43
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.42
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.42
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.39
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.39
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.38
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.38
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.36
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.34
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.33
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.28
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.27
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.26
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.2
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.16
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.69
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.0
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.98
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.97
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.97
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.93
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.93
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.92
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.91
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.9
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.88
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.87
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.87
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.85
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.83
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.68
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.46
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.21
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.97
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.8
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.59
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 97.52
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.93
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 96.89
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.5
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.0
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 95.84
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 95.84
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 95.73
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.57
2crg_A70 Metastasis associated protein MTA3; transcription 94.7
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 92.6
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 87.87
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 84.63
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 81.48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=99.48  E-value=7.5e-15  Score=132.76  Aligned_cols=63  Identities=46%  Similarity=0.829  Sum_probs=50.9

Q ss_pred             CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh-----hhhCcHHHHhHhhh
Q 047353            5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI-----KNHWNSSVKKKLDS   67 (921)
Q Consensus         5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI-----KNrWns~lKKKL~k   67 (921)
                      .+||+||+|||++|+++|++||.++|..||++|+||+++|||+|+-+.+     +..|.......|..
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~   69 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ   69 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence            4789999999999999999999989999999999999999999933222     34466555544443
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 921
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-14
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 6e-13
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-11
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 1e-10
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-10
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 2e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-10
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 3e-10
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-09
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-09
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 5e-09
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 1e-07
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-06
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (157), Expect = 8e-14
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
          +EDE + +LV + G   W  IA +LP R   QC+ R
Sbjct: 7  EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 42
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query921
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.43
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.39
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.38
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.29
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.25
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.24
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.16
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.03
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.95
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.95
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.89
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.63
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.62
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.54
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 96.96
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 96.57
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 94.08
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 91.46
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 89.76
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.5e-14  Score=116.30  Aligned_cols=44  Identities=59%  Similarity=1.017  Sum_probs=41.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCC
Q 047353            6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERT   49 (921)
Q Consensus         6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRT   49 (921)
                      .||+||+|||++|+++|++||.++|..||++|+|||++|||+|+
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw   45 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW   45 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Confidence            68999999999999999999988999999999999999998883
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure