Citrus Sinensis ID: 047385

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDESMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSSATH
ccccEEEEEEcccccHHHHcccccEEEEcccccEEEEEccccccccccccEEccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccccccccccccEEEEEccccEEEccccEEEEccHHHHHHHHHHHHHHccHHHccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHEEEEEccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHccccc
cccEEEEEEEccccHHHHHccccEEEEEEccccEEEEcccccccEEEEccEEEcccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEccccccccccEcHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEccccccccEcEEEcccccEEEcccccEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccHcccccccHHHcHHHHHcHHHHHccEEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccc
msnitvcarfrplsskersnhgdsvcihgidnesfifkddkeenfkfgfdrVFYEKSEQAEVFEFLALPIIrdafngmngtvitygqtgagktfsmegpsilacdeqkKGLLQRTVDELFDCmkssdasvKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGisnravgetqmnmassrshCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVIsaltcgspgkafhipyrdSKLTRILQDAlggnsrtallcccspstsnsaeslstlrfgtrakhikasphahcskesnakkhgvyeatkDESMERILNKLRERLDVENVNLLEELFIMEgiildpnsvedldLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHkeagengyASIVHKISDRLSHLVSwiwpfssath
msnitvcarfrplsskersnhgdsvciHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDcmkssdasvkfTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLlvdlagsekaektgaegkvleEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIkasphahcskesnakkhgvyeatkdesMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSSATH
MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDESMERILNKLRERLDvenvnlleelFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSSATH
***********************SVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGI***************RSHCIYIFTVQQELTKEKRVKAGKLLLVDLA*******************TINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCS****************************************************ILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPF*****
MSNITVCARFRPLSSK*****GD*VCIHGID**********EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPS**A**EQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTV**************LLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNA*********************************************************************************************************************************P******
MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCS*********LSTLRFGTRAK****************KKHGVYEATKDESMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSSATH
*SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQ*NMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAG******************TINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDESMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFS****
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MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDESMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSSATH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
F9W301477 Kinesin-1-like protein PS yes no 0.896 0.907 0.629 1e-162
Q54UC9 1193 Kinesin-related protein 3 yes no 0.683 0.276 0.497 9e-95
O43093 935 Kinesin heavy chain OS=Sy N/A no 0.674 0.348 0.508 1e-85
P48467 928 Kinesin heavy chain OS=Ne N/A no 0.672 0.350 0.494 6e-85
Q86Z98 931 Kinesin heavy chain OS=Gi N/A no 0.674 0.350 0.480 7e-83
Q86ZC1 880 Kinesin heavy chain OS=Bo N/A no 0.677 0.371 0.474 2e-80
P35978 1031 Kinesin heavy chain OS=St yes no 0.650 0.304 0.465 3e-79
P33176 963 Kinesin-1 heavy chain OS= yes no 0.660 0.331 0.478 2e-78
Q2PQA9 963 Kinesin-1 heavy chain OS= yes no 0.656 0.329 0.476 3e-78
Q61768 963 Kinesin-1 heavy chain OS= yes no 0.656 0.329 0.476 3e-78
>sp|F9W301|PSS1_ORYSJ Kinesin-1-like protein PSS1 OS=Oryza sativa subsp. japonica GN=PSS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/437 (62%), Positives = 348/437 (79%), Gaps = 4/437 (0%)

Query: 1   MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA 60
           MSN+TVC RFRPLS KER  +GD VC   +D+ESF+FKD++EE+  F FDRVFYE +EQ+
Sbjct: 1   MSNVTVCVRFRPLSHKERKTNGDKVCFKRLDSESFVFKDEREEDVIFSFDRVFYEDAEQS 60

Query: 61  EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELF 120
           +V+ FLA+PI+ DA +G+NGT+ITYGQTGAGKT+SMEGPSIL C++QK GL+QR VDELF
Sbjct: 61  DVYNFLAVPIVADAISGINGTIITYGQTGAGKTYSMEGPSILHCNKQKTGLVQRVVDELF 120

Query: 121 DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNS 180
             ++SS++   +++KLSMVEIY+EKVRDL DLS+DN+QIKES+ QGI +SG TE+ + NS
Sbjct: 121 QSLQSSESMAMWSVKLSMVEIYLEKVRDLLDLSKDNLQIKESKTQGIYISGATEVSIQNS 180

Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240
           ++AL+ L+ GI+NRAVGETQMN+ASSRSHC+YIF+VQQ  T ++RV+ GK++LVDLAGSE
Sbjct: 181 SDALECLSEGIANRAVGETQMNLASSRSHCLYIFSVQQGSTSDERVRGGKIILVDLAGSE 240

Query: 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG 300
           K EKTGAEG+VL+EAKTINKSLS LGNV++ALT G P    H+PYRDSKLTRILQDALGG
Sbjct: 241 KVEKTGAEGRVLDEAKTINKSLSVLGNVVNALTTGKPN---HVPYRDSKLTRILQDALGG 297

Query: 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDES 360
           NSR ALLCCCSPS SN+ ESLST+RFGTR K IK +P +   +  + KK       +++ 
Sbjct: 298 NSRAALLCCCSPSASNAPESLSTVRFGTRTKLIKTTPKSISPEVDSIKKPIPDSHGQNDL 357

Query: 361 MERILNKLRERLDVENVNLLEELFIMEGIILDPN-SVEDLDLAFEDVTLQTITSLQHMVE 419
            +RILNKLR  L  E+V+LLEELF+ EGII DPN SV D+D A +D   Q ++ L   VE
Sbjct: 358 RDRILNKLRLSLKEEDVDLLEELFVQEGIIFDPNYSVADIDSACQDAASQEVSLLTQAVE 417

Query: 420 DLVRAVEELKSENKALK 436
           +L   VEEL  EN+ L+
Sbjct: 418 ELKETVEELTDENERLR 434
Kinesin-like motor protein that exhibits microtubule-stimulated ATPase activity. Plays an essential role in male meiotic chromosomal dynamics, male gametogenesis and anther dehiscence. May play a minor and nonessential role in regulating meiotic spindle formation.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q54UC9|KIF3_DICDI Kinesin-related protein 3 OS=Dictyostelium discoideum GN=kif3 PE=1 SV=1 Back     alignment and function description
>sp|O43093|KINH_SYNRA Kinesin heavy chain OS=Syncephalastrum racemosum PE=2 SV=1 Back     alignment and function description
>sp|P48467|KINH_NEUCR Kinesin heavy chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=kin PE=1 SV=2 Back     alignment and function description
>sp|Q86Z98|KINH_GIBMO Kinesin heavy chain OS=Gibberella moniliformis GN=KLP1 PE=3 SV=1 Back     alignment and function description
>sp|Q86ZC1|KINH_BOTFU Kinesin heavy chain OS=Botryotinia fuckeliana GN=klp1 PE=3 SV=1 Back     alignment and function description
>sp|P35978|KINH_STRPU Kinesin heavy chain OS=Strongylocentrotus purpuratus PE=2 SV=1 Back     alignment and function description
>sp|P33176|KINH_HUMAN Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1 Back     alignment and function description
>sp|Q2PQA9|KINH_RAT Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5b PE=1 SV=1 Back     alignment and function description
>sp|Q61768|KINH_MOUSE Kinesin-1 heavy chain OS=Mus musculus GN=Kif5b PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
359487774482 PREDICTED: kinesin-related protein 3-lik 0.966 0.968 0.724 0.0
255542552482 Kinesin heavy chain, putative [Ricinus c 0.975 0.977 0.708 0.0
296088293425 unnamed protein product [Vitis vinifera] 0.871 0.990 0.748 0.0
224130942473 predicted protein [Populus trichocarpa] 0.964 0.985 0.670 1e-180
356556972483 PREDICTED: kinesin-related protein 3-lik 0.987 0.987 0.651 1e-173
449449667480 PREDICTED: kinesin-1-like protein PSS1-l 0.913 0.918 0.665 1e-172
356528698469 PREDICTED: kinesin-related protein 3-lik 0.886 0.912 0.681 1e-164
297821272469 hypothetical protein ARALYDRAFT_907935 [ 0.904 0.931 0.650 1e-163
30695816465 ATP binding microtubule motor family pro 0.900 0.935 0.647 1e-162
21553553469 kinesin heavy chain-like protein [Arabid 0.954 0.982 0.606 1e-161
>gi|359487774|ref|XP_002281127.2| PREDICTED: kinesin-related protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/469 (72%), Positives = 396/469 (84%), Gaps = 2/469 (0%)

Query: 1   MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA 60
           MS+ITVCARFRPLSSKER +HGDSV +  +D+E+FIFKD+KEE+F F FDRVFY+ SEQ 
Sbjct: 1   MSHITVCARFRPLSSKERRDHGDSVSVQSLDSETFIFKDEKEEDFTFSFDRVFYQGSEQV 60

Query: 61  EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELF 120
           +V+EFLALPI+RDA N +NGT+ITYGQTGAGKT+SMEGPSIL CD+QKKGLL R VD LF
Sbjct: 61  DVYEFLALPIVRDAVNAINGTIITYGQTGAGKTYSMEGPSILECDQQKKGLLPRVVDGLF 120

Query: 121 DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNS 180
            C+KSSD + K+TIKLSMVEIYMEKVRDLFDL +DNIQIKES+V GILLSGVTE+ + +S
Sbjct: 121 QCIKSSDEATKYTIKLSMVEIYMEKVRDLFDLLKDNIQIKESKVHGILLSGVTEVSILDS 180

Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240
            EAL SL+ GI+NRAVGETQMNMASSRSHC+YIFTVQQE  K+KR++ GKL+LVDLAGSE
Sbjct: 181 TEALHSLSRGIANRAVGETQMNMASSRSHCVYIFTVQQEFPKDKRIRTGKLILVDLAGSE 240

Query: 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG 300
           K EKTGAEGK+L+EAKTINKSLSALGNVI+ALTC   G+A HIPYRDSKLTRILQDALGG
Sbjct: 241 KVEKTGAEGKLLDEAKTINKSLSALGNVINALTCSPQGRANHIPYRDSKLTRILQDALGG 300

Query: 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDES 360
           NSRTALLCCCSPS SN++ESLSTLRFG RAKHIKASP    + +   KKHG    +KD S
Sbjct: 301 NSRTALLCCCSPSPSNASESLSTLRFGARAKHIKASPRVSHNDDKYTKKHGTQSPSKDGS 360

Query: 361 MERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVED 420
            ERILNKL E+LD+E+VNLLEELFI+EGI   PNSVEDL+L  EDV L+TI+SLQ  +E+
Sbjct: 361 CERILNKLTEKLDIEDVNLLEELFILEGIFSYPNSVEDLELTLEDVALRTISSLQEALEE 420

Query: 421 LVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLS 469
           L   VEELK ENKALK R+AAA ++D  +K+AG  G  S +HK+   LS
Sbjct: 421 LTLIVEELKIENKALKFRLAAAERVDTLNKKAG--GNTSFLHKVFQALS 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542552|ref|XP_002512339.1| Kinesin heavy chain, putative [Ricinus communis] gi|223548300|gb|EEF49791.1| Kinesin heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296088293|emb|CBI36738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130942|ref|XP_002328414.1| predicted protein [Populus trichocarpa] gi|222838129|gb|EEE76494.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556972|ref|XP_003546793.1| PREDICTED: kinesin-related protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449449667|ref|XP_004142586.1| PREDICTED: kinesin-1-like protein PSS1-like [Cucumis sativus] gi|449479803|ref|XP_004155712.1| PREDICTED: kinesin-1-like protein PSS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356528698|ref|XP_003532936.1| PREDICTED: kinesin-related protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|297821272|ref|XP_002878519.1| hypothetical protein ARALYDRAFT_907935 [Arabidopsis lyrata subsp. lyrata] gi|297324357|gb|EFH54778.1| hypothetical protein ARALYDRAFT_907935 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30695816|ref|NP_850742.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|26453185|dbj|BAC43667.1| putative kinesin heavy chain [Arabidopsis thaliana] gi|28951063|gb|AAO63455.1| At3g63480 [Arabidopsis thaliana] gi|332646970|gb|AEE80491.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553553|gb|AAM62646.1| kinesin heavy chain-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2087378469 AT3G63480 [Arabidopsis thalian 0.892 0.918 0.640 7.8e-142
DICTYBASE|DDB_G0280967 1193 kif3 "kinesin-1" [Dictyosteliu 0.753 0.305 0.462 9e-90
ASPGD|ASPL0000033533 966 kinA [Emericella nidulans (tax 0.674 0.337 0.486 1.2e-79
ZFIN|ZDB-GENE-070629-2 968 kif5ba "kinesin family member 0.737 0.367 0.440 2.9e-74
UNIPROTKB|F1RWC5 960 KIF5B "Uncharacterized protein 0.737 0.370 0.438 1.6e-73
UNIPROTKB|F1N945 995 KIF5C "Uncharacterized protein 0.743 0.360 0.439 1.6e-73
UNIPROTKB|O60282 957 KIF5C "Kinesin heavy chain iso 0.743 0.375 0.434 2e-73
ZFIN|ZDB-GENE-070912-141 1033 kif5aa "kinesin family member 0.739 0.345 0.440 2.3e-73
UNIPROTKB|E2RDZ9 957 KIF5C "Uncharacterized protein 0.743 0.375 0.434 2.5e-73
UNIPROTKB|F1NE00 933 KIF5C "Uncharacterized protein 0.741 0.383 0.442 4.1e-73
TAIR|locus:2087378 AT3G63480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
 Identities = 280/437 (64%), Positives = 338/437 (77%)

Query:     1 MSNITVCARFRPLSSKE-RSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQ 59
             MSN+TVCARFRP SSKE R    D VC   ID E+F+F+DDKE+ F F  DRVFYE S Q
Sbjct:     1 MSNVTVCARFRPRSSKEMRDPSRDGVCARPIDAETFVFQDDKEDEFTFSLDRVFYEDSTQ 60

Query:    60 AEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDEL 119
             A V+EFLALPI+RDA NG+NGT+ITYGQTGAGKT+SMEGP I  CDE  KGLL R V  +
Sbjct:    61 AAVYEFLALPIMRDAVNGINGTIITYGQTGAGKTYSMEGPGIQDCDEHNKGLLPRVVHGM 120

Query:   120 FDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTE----I 175
             F+ + SS+   ++T+KLSMVEIYMEKVRDL DLS+ NIQIKE++ QGILLSGVTE    +
Sbjct:   121 FEQISSSNDIARYTVKLSMVEIYMEKVRDLLDLSKANIQIKENKTQGILLSGVTEASFIV 180

Query:   176 YVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVD 235
              V +S EALQ L +G++NRAVGETQMNM+SSRSHC Y+FT+QQ+  K+KRVK GKL+LVD
Sbjct:   181 PVSDSVEALQHLCTGLANRAVGETQMNMSSSRSHCAYLFTIQQDSVKDKRVKTGKLILVD 240

Query:   236 LAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQ 295
             LAGSEKA+KTGAEG+VLEEAKTINKSLSALGNVI+ALT G   K  HIPYRDSKLTRILQ
Sbjct:   241 LAGSEKADKTGAEGRVLEEAKTINKSLSALGNVINALTSGPSSKGNHIPYRDSKLTRILQ 300

Query:   296 DALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEA 355
             DALGGNSR ALLCCCSPST N++E+LSTLRFG RAKHIKASP A   K + A++      
Sbjct:   301 DALGGNSRMALLCCCSPSTLNASETLSTLRFGMRAKHIKASPRASEVKSAKAQEEPS-SV 359

Query:   356 TKDESMERILNKLRERLDXXXXXXXXXXFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQ 415
             TKDE   RIL K++ER+           FI EGII   +S+ +++  +ED+  +TI SLQ
Sbjct:   360 TKDEKCGRILEKMKERMSNEDIKMLEDVFIQEGIIFSLDSMAEVETVYEDIVSKTIQSLQ 419

Query:   416 HMVEDLVRAVEELKSEN 432
               V++L + V++L++EN
Sbjct:   420 QAVDELQQKVKKLEAEN 436
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
DICTYBASE|DDB_G0280967 kif3 "kinesin-1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000033533 kinA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070629-2 kif5ba "kinesin family member 5B, a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWC5 KIF5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N945 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O60282 KIF5C "Kinesin heavy chain isoform 5C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-141 kif5aa "kinesin family member 5A, a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDZ9 KIF5C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE00 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F9W301PSS1_ORYSJNo assigned EC number0.62920.89640.9077yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 1e-167
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-133
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-130
cd00106328 cd00106, KISc, Kinesin motor domain 1e-126
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 1e-103
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 1e-101
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 9e-96
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-95
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 1e-94
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 4e-93
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 2e-90
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 2e-86
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 3e-78
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 6e-76
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 5e-73
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 2e-71
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 1e-68
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 6e-64
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 5e-38
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 1e-08
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information 
 Score =  474 bits (1222), Expect = e-167
 Identities = 174/333 (52%), Positives = 229/333 (68%), Gaps = 8/333 (2%)

Query: 1   MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA 60
             NI V  RFRPL+ KE    G    +     ++       ++   F FDRVF   + Q 
Sbjct: 1   ECNIKVVCRFRPLNEKEELR-GSKSIVKFPGEDTVSI-AGSDDGKTFSFDRVFPPNTTQE 58

Query: 61  EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELF 120
           +V+ F+A PI+ D  NG NGT+  YGQTG+GKT++MEGP     D + KG++ R V ++F
Sbjct: 59  DVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPG---DPELKGIIPRIVHDIF 115

Query: 121 DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNS 180
           + + S D +++F +K+S +EIYMEK+RDL D+S+DN+Q+ E + +G+ + G+TE +V + 
Sbjct: 116 EHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSP 175

Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240
            E L+ +  G SNRAV  T MN  SSRSH I++ T++QE  +    K GKL LVDLAGSE
Sbjct: 176 EEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSE 235

Query: 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG 300
           K  KTGAEG+ LEEAK INKSLSALGNVI+ALT    GK+ HIPYRDSKLTRILQD+LGG
Sbjct: 236 KVSKTGAEGQTLEEAKKINKSLSALGNVINALTD---GKSTHIPYRDSKLTRILQDSLGG 292

Query: 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
           NSRT L+ CCSPS+ N +E+LSTLRFG RAK I
Sbjct: 293 NSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0240 607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
KOG0242 675 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
KOG0247 809 consensus Kinesin-like protein [Cytoskeleton] 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0244 913 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 98.04
COG0556 663 UvrB Helicase subunit of the DNA excision repair c 95.7
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.37
PRK06893229 DNA replication initiation factor; Validated 93.82
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 93.78
PRK06620214 hypothetical protein; Validated 92.8
PRK09087226 hypothetical protein; Validated 91.87
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 91.7
PRK12377248 putative replication protein; Provisional 91.64
PRK08084235 DNA replication initiation factor; Provisional 91.24
PRK14086617 dnaA chromosomal replication initiation protein; P 90.92
PRK05642234 DNA replication initiation factor; Validated 90.9
PRK08116268 hypothetical protein; Validated 90.7
PRK06526254 transposase; Provisional 90.44
PRK14088440 dnaA chromosomal replication initiation protein; P 90.31
PRK07952244 DNA replication protein DnaC; Validated 90.06
TIGR00362405 DnaA chromosomal replication initiator protein Dna 89.71
PRK14087450 dnaA chromosomal replication initiation protein; P 89.62
PRK00149450 dnaA chromosomal replication initiation protein; R 89.13
PRK06835329 DNA replication protein DnaC; Validated 88.74
PF04851184 ResIII: Type III restriction enzyme, res subunit; 88.41
COG0593408 DnaA ATPase involved in DNA replication initiation 88.18
PRK08727233 hypothetical protein; Validated 88.1
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 88.1
PRK08939306 primosomal protein DnaI; Reviewed 87.88
PF1324576 AAA_19: Part of AAA domain 87.71
PRK08181269 transposase; Validated 87.56
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 87.52
PRK00411394 cdc6 cell division control protein 6; Reviewed 87.07
TIGR02928365 orc1/cdc6 family replication initiation protein. M 87.02
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 86.95
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 86.92
TIGR00631 655 uvrb excinuclease ABC, B subunit. This family is b 86.52
PRK10436462 hypothetical protein; Provisional 86.49
PRK08903227 DnaA regulatory inactivator Hda; Validated 86.27
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 86.12
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 85.96
COG1484254 DnaC DNA replication protein [DNA replication, rec 85.92
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 85.26
TIGR02533486 type_II_gspE general secretory pathway protein E. 84.52
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 84.14
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 83.97
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 83.94
TIGR0244965 conserved hypothetical protein TIGR02449. Members 83.73
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 83.47
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 83.45
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 83.44
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 83.15
PRK06921266 hypothetical protein; Provisional 82.96
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 82.94
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 82.85
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 82.7
smart00382148 AAA ATPases associated with a variety of cellular 82.54
PRK12422445 chromosomal replication initiation protein; Provis 82.47
PRK09183259 transposase/IS protein; Provisional 82.01
PRK03992389 proteasome-activating nucleotidase; Provisional 81.41
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 81.39
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 81.23
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 81.2
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 81.03
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 80.87
COG1201 814 Lhr Lhr-like helicases [General function predictio 80.17
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-95  Score=779.44  Aligned_cols=338  Identities=35%  Similarity=0.591  Sum_probs=310.1

Q ss_pred             CCCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC--CcceeEeecEEecCC-------CchHHHHHHHHHHHH
Q 047385            1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK--EENFKFGFDRVFYEK-------SEQAEVFEFLALPII   71 (483)
Q Consensus         1 m~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~F~FD~Vf~~~-------~~Q~~vf~~~~~plv   71 (483)
                      +++|.|+|||||++.+|...  ...|+..+.+++..+..|+  .....|+||+.|+..       ++|..||+.++.|++
T Consensus         3 ~ssv~VAVRVRPfn~rE~s~--~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL   80 (1221)
T KOG0245|consen    3 GSSVKVAVRVRPFNAREKSR--DAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML   80 (1221)
T ss_pred             CCceEEEEEeccchhhhhhc--ccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence            57899999999999999874  5678888877776665544  345679999999754       789999999999999


Q ss_pred             HHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeeccc
Q 047385           72 RDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLF  150 (483)
Q Consensus        72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL  150 (483)
                      +.+|+|||+||||||||||||||||+|..    .++++|||||+|++||.++... ..+..|.|.|||+|||||+|+|||
T Consensus        81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~----~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL  156 (1221)
T KOG0245|consen   81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ----EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL  156 (1221)
T ss_pred             HHHhcccceEEEEeccCCCCcceeeeccC----CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence            99999999999999999999999999965    4578999999999999999765 456899999999999999999999


Q ss_pred             C-CC-CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc----cc
Q 047385          151 D-LS-RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK----EK  224 (483)
Q Consensus       151 ~-~~-~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~----~~  224 (483)
                      + |. +.+|++||+|..|+||.+|+.+.|+|+.|+..+|..|++.|++++|.||+.|||||+||+|.+.|+...    ..
T Consensus       157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~  236 (1221)
T KOG0245|consen  157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD  236 (1221)
T ss_pred             hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence            8 54 458999999999999999999999999999999999999999999999999999999999999998652    33


Q ss_pred             eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCC---CCCCCccCCCcccchhhhhccCCC
Q 047385          225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP---GKAFHIPYRDSKLTRILQDALGGN  301 (483)
Q Consensus       225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~---~~~~~iPyRdSkLT~lLqdsLgGn  301 (483)
                      ..+.|||+|||||||||++.+|+.|+|++||.+|||||++||+||+||++.++   ++..+||||||.|||||++.||||
T Consensus       237 sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGN  316 (1221)
T KOG0245|consen  237 SEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGN  316 (1221)
T ss_pred             ceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCc
Confidence            67899999999999999999999999999999999999999999999998654   456699999999999999999999


Q ss_pred             cceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385          302 SRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKE  344 (483)
Q Consensus       302 s~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~  344 (483)
                      |||+|||++||++.||+|||+|||||+|||.|+|+++||+++.
T Consensus       317 SKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpn  359 (1221)
T KOG0245|consen  317 SKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPN  359 (1221)
T ss_pred             chhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCcc
Confidence            9999999999999999999999999999999999999999985

>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 9e-86
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 1e-78
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 4e-78
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 6e-78
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 2e-75
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 9e-64
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 2e-59
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 5e-59
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 9e-57
4a28_A368 Eg5-2 Length = 368 1e-56
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 1e-56
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 1e-56
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 1e-56
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 1e-56
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 1e-56
4a1z_A368 Eg5-1 Length = 368 1e-56
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 2e-56
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 8e-56
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 2e-55
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 4e-55
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 6e-55
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 2e-54
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 1e-51
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 3e-51
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 9e-51
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 9e-51
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 1e-50
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 1e-50
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 2e-50
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 2e-48
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 2e-47
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 3e-45
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 7e-42
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 4e-41
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 4e-41
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 5e-41
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 7e-41
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 1e-40
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 3e-40
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 2e-39
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 5e-39
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 5e-35
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 5e-35
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 1e-34
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 4e-34
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 5e-34
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 7e-34
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 1e-33
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 2e-33
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 3e-33
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 5e-33
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 9e-33
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 3e-32
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 4e-32
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 5e-32
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 2e-30
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 3e-23
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 9e-23
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  314 bits (804), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 165/334 (49%), Positives = 223/334 (66%), Gaps = 9/334 (2%)
Query: 2   SNITVCARFRPLSSKERSNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA 60
           ++I V ARFRP +  E  + G   V   G D  +    D KE    F FDRVF    +Q+
Sbjct: 6   NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV---DSKEAQGSFTFDRVFDMSCKQS 62
Query: 61  EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELF 120
           ++F+F   P + D  NG NGTV  YGQTGAGK+++M G SI   D   +G++ R V+++F
Sbjct: 63  DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSI--DDPDGRGVIPRIVEQIF 120
Query: 121 DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNS 180
             + SS A++++T+++S +EIYME++RDL     DN+ + E + +G+ + G+ EIYV + 
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSV 180
Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240
            E  + +  G + RAV  T MN  SSRSH I++ T+ Q+  +    K+G+L LVDLAGSE
Sbjct: 181 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSE 240
Query: 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG 300
           K  KTGA G+ LEEAK INKSLSALG VI+ALT    GK+ H+PYRDSKLTRILQ++LGG
Sbjct: 241 KVGKTGASGQTLEEAKKINKSLSALGMVINALT---DGKSSHVPYRDSKLTRILQESLGG 297
Query: 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
           NSRT L+  CSPS+ N AE+LSTLRFG RAK IK
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-158
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-153
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-152
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-145
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-141
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 1e-140
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-140
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-140
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-140
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-140
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 1e-140
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 1e-139
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-138
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-138
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-137
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-136
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 1e-133
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-132
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-132
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 1e-131
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-128
3u06_A412 Protein claret segregational; motor domain, stalk 1e-128
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 1e-127
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 1e-124
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-120
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 1e-119
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 3e-43
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 9e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
 Score =  449 bits (1158), Expect = e-158
 Identities = 154/332 (46%), Positives = 211/332 (63%), Gaps = 13/332 (3%)

Query: 2   SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAE 61
            NI V  RFRPL+  E +  GD         ++ +          + FDRVF   + Q +
Sbjct: 7   CNIKVMCRFRPLNESEVN-RGDKYIAKFQGEDTVVIASKP-----YAFDRVFQSSTSQEQ 60

Query: 62  VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121
           V+   A  I++D   G NGT+  YGQT +GKT +MEG      D +  G++ R V ++F+
Sbjct: 61  VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL---HDPEGMGIIPRIVQDIFN 117

Query: 122 CMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSA 181
            + S D +++F IK+S  EIY++K+RDL D+S+ N+ + E + +   + G TE +V +  
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 177

Query: 182 EALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEK 241
           E + ++  G SNR V  T MN  SSRSH I++  V+QE T+ ++  +GKL LVDLAGSEK
Sbjct: 178 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237

Query: 242 AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGN 301
             KTGAEG VL+EAK INKSLSALGNVISAL  GS     ++PYRDSK+TRILQD+LGGN
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQDSLGGN 293

Query: 302 SRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
            RT ++ CCSPS+ N +E+ STL FG RAK I
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 99.97
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.96
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.93
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 95.01
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 93.64
2qgz_A308 Helicase loader, putative primosome component; str 92.9
4etp_B333 Spindle POLE BODY-associated protein VIK1; kinesin 92.3
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 89.93
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 89.72
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 89.12
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 88.94
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 87.53
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 87.41
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 87.15
2r62_A268 Cell division protease FTSH homolog; ATPase domain 87.01
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 86.63
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 86.46
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 86.19
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 85.55
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 85.54
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 85.51
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 84.83
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 82.89
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 82.32
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 82.15
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 81.32
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 81.22
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 81.17
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 81.11
3bos_A242 Putative DNA replication factor; P-loop containing 80.77
1p9r_A418 General secretion pathway protein E; bacterial typ 80.76
2chg_A226 Replication factor C small subunit; DNA-binding pr 80.76
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 80.67
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 80.58
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 80.42
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
Probab=100.00  E-value=4.5e-95  Score=742.72  Aligned_cols=338  Identities=47%  Similarity=0.737  Sum_probs=313.0

Q ss_pred             CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385            2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT   81 (483)
Q Consensus         2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t   81 (483)
                      ++|+|+|||||++..|...+ ...|+...++.++.+. .....+.|+||+||+++++|++||+.++.|+|+++++|||+|
T Consensus         6 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~~-~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t   83 (355)
T 1goj_A            6 NSIKVVARFRPQNRVEIESG-GQPIVTFQGPDTCTVD-SKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT   83 (355)
T ss_dssp             CBCEEEEEECCCCHHHHTTT-CCBCEEECSTTEEEEC-STTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred             CCeEEEEECCCCChHHhhcC-CceEEEEcCCCeEEEc-cCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence            68999999999999998654 3456666666665554 345678999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcceeee
Q 047385           82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKE  161 (483)
Q Consensus        82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e  161 (483)
                      |||||||||||||||+|++..  +++++|||||++++||+.+.......+|.|++||+|||||+|+|||++....+.+++
T Consensus        84 ifAYGqTGSGKTyTm~G~~~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e  161 (355)
T 1goj_A           84 VFAYGQTGAGKSYTMMGTSID--DPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHE  161 (355)
T ss_dssp             EEEECSTTSSHHHHHTBSCTT--STTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEE
T ss_pred             EEEECCCCCCcceEeecCCCC--CcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEE
Confidence            999999999999999996532  346789999999999999988777889999999999999999999999888999999


Q ss_pred             ccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCcc
Q 047385          162 SRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEK  241 (483)
Q Consensus       162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsEr  241 (483)
                      ++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+..........|+|+|||||||||
T Consensus       162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr  241 (355)
T 1goj_A          162 EKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEK  241 (355)
T ss_dssp             ETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSC
T ss_pred             cCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999988777788899999999999999


Q ss_pred             ccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHH
Q 047385          242 AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESL  321 (483)
Q Consensus       242 ~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETl  321 (483)
                      .+++++.|.+++|+.+||+||++||+||.+|+++   +..|||||||||||||||+||||++|+|||||||+..+++||+
T Consensus       242 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~---~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl  318 (355)
T 1goj_A          242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDG---KSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETL  318 (355)
T ss_dssp             CTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHC---SCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHH
T ss_pred             ccccccchhhHHHHHhhhhHHHHHHHHHHHHhcC---CCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHH
Confidence            9999999999999999999999999999999973   4579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcccccccch
Q 047385          322 STLRFGTRAKHIKASPHAHCSKESN  346 (483)
Q Consensus       322 sTL~fa~rak~I~~~~~~n~~~~~~  346 (483)
                      +||+||+|||+|+|+|++|.+.+..
T Consensus       319 ~TL~fA~rak~I~n~~~vn~~~~~~  343 (355)
T 1goj_A          319 STLRFGMRAKSIKNKAKVNAELSPA  343 (355)
T ss_dssp             HHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred             HHHHHHHHHhhccCCceeCCCCCHH
Confidence            9999999999999999999887653
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 6e-89
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 2e-84
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 2e-78
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 3e-78
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 5e-78
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 9e-77
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 1e-74
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 9e-69
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 1e-65
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  272 bits (697), Expect = 6e-89
 Identities = 155/332 (46%), Positives = 212/332 (63%), Gaps = 13/332 (3%)

Query: 2   SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAE 61
            NI V  RFRPL+  E  N GD         ++ +       +  + FDRVF   + Q +
Sbjct: 5   CNIKVMCRFRPLNESEV-NRGDKYIAKFQGEDTVVIA-----SKPYAFDRVFQSSTSQEQ 58

Query: 62  VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121
           V+   A  I++D   G NGT+  YGQT +GKT +MEG      D +  G++ R V ++F+
Sbjct: 59  VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL---HDPEGMGIIPRIVQDIFN 115

Query: 122 CMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSA 181
            + S D +++F IK+S  EIY++K+RDL D+S+ N+ + E + +   + G TE +V +  
Sbjct: 116 YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 175

Query: 182 EALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEK 241
           E + ++  G SNR V  T MN  SSRSH I++  V+QE T+ ++  +GKL LVDLAGSEK
Sbjct: 176 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 235

Query: 242 AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGN 301
             KTGAEG VL+EAK INKSLSALGNVISAL  GS     ++PYRDSK+TRILQD+LGGN
Sbjct: 236 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQDSLGGN 291

Query: 302 SRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
            RT ++ CCSPS+ N +E+ STL FG RAK I
Sbjct: 292 CRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.76
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 92.93
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 90.82
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 90.04
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 88.63
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 86.93
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 86.83
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 86.37
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 85.4
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 85.04
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 83.52
d1okkd2207 GTPase domain of the signal recognition particle r 83.25
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 82.1
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 81.28
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=3.9e-87  Score=687.35  Aligned_cols=329  Identities=36%  Similarity=0.540  Sum_probs=298.9

Q ss_pred             CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEE
Q 047385            3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTV   82 (483)
Q Consensus         3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti   82 (483)
                      +|+|+|||||+++.|...+ ...|+...++.++.........+.|+||+||+++++|++||+.+ .|+|+++++|||+||
T Consensus         1 rIkV~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i   78 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAK-ERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCI   78 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTT-CCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEE
T ss_pred             CeEEEEEcCCCChhhcccC-CCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceee
Confidence            5999999999999997643 45567778888887777667789999999999999999999974 899999999999999


Q ss_pred             EeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCC---ccee
Q 047385           83 ITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI  159 (483)
Q Consensus        83 ~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~---~l~i  159 (483)
                      ||||||||||||||+|+.      .++||+||++.+||+.+........|.|++||+|||||.++|||.+...   .+.+
T Consensus        79 ~aYGqTGSGKTyTm~G~~------~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~  152 (364)
T d1sdma_          79 FAYGQTGSGKTFTIYGAD------SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDI  152 (364)
T ss_dssp             EEECSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEE
T ss_pred             eccccCCCCcccccccCc------cccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccce
Confidence            999999999999999954      5689999999999999988877889999999999999999999987543   6789


Q ss_pred             eeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCC
Q 047385          160 KESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGS  239 (483)
Q Consensus       160 ~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGs  239 (483)
                      ++++.++++|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||++++.+..........|+|+|||||||
T Consensus       153 ~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGs  232 (364)
T d1sdma_         153 KKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS  232 (364)
T ss_dssp             EECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCC
T ss_pred             eecccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhhc
Confidence            99999999999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             ccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHH
Q 047385          240 EKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAE  319 (483)
Q Consensus       240 Er~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~E  319 (483)
                      ||..++++.|.+++|+..||+||++|++||.+|+.    +..|||||+||||+||+|+|||||+|+|||||||+..+++|
T Consensus       233 Er~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~----~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~e  308 (364)
T d1sdma_         233 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE  308 (364)
T ss_dssp             SCCCC---------CCCTTCHHHHHHHHHHHHHHH----TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred             cccccccccCceeeeccccccchhhHHHHHHHHHc----CCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHH
Confidence            99999999999999999999999999999999997    45699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcccccc
Q 047385          320 SLSTLRFGTRAKHIKASPHAHCSK  343 (483)
Q Consensus       320 TlsTL~fa~rak~I~~~~~~n~~~  343 (483)
                      |++||+||+||++|+|+|.+|...
T Consensus       309 Tl~TL~fa~~ak~i~n~p~~n~~~  332 (364)
T d1sdma_         309 THNSLTYASRVRSIVNDPSKNVSS  332 (364)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred             HHHHHHHHHHHhhcccCCcccCCH
Confidence            999999999999999999998653
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure