Citrus Sinensis ID: 047406

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MVKKIMENKVEEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccEEEEccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHcccHHHHccccccccccHHHHHHHHHccccEEEEEccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccccccEEcccccccccEEccccccccccHHHccHHHHccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEcccccccccccEEEEEEEEHEEEEccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHccHHHHHHHHHcEccHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
MVKKIMENKVEEEEKGEAQQLKkrkgkdvfpfgnyknyygyrigqglnedprfkvlkkewfegkdcldigcnsGIITIQIAQKfncrsilgididsnrVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAisrncspaernlfdivsfkqenfvhgrdspekyYDAILCLSVTKWihlnwgddgLITLFMRIWKLlrpggifvlepqpwvsyeknrrvsettatnfqniklyPKEFQEILLDkigfrtvedigsgglsssktgfnrpiflfrk
Flexible Loop (DISEMBL)
mvkkimenkveeeekgeaqqlkkrkgkdvfpfgnYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKivrtehnekrranasrveviekgdgleknVTAAQeekkaisrncspaeRNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIfvlepqpwvsyeknRRVSettatnfqniklypKEFQEILLDKIGFRTVEdigsgglsssktgfnrpiflfrk
Low Complexity Region (SEG)
MVkkimenkveeeekgeaqqlkkRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK
Disordered region (IsUnstruct)
***************************DVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRT********************************************RNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSG***********PIFL***
Disordered Region (DISOPRED)
********************************GNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRT*********ASRVEVIEKGDGL**********************RNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI**********GFNRPIFLFRK
Disordered Region (DISEMBL)
************************KGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV*********ISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK
Disordered Region (DISPRO)
**************************KDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTE******************************************ERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKKIMENKVEEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q6NPC9	318	Probable RNA methyltransf	yes	no	0.917	0.836	0.617	4e-94
Q7L2J0	689	7SK snRNA methylphosphate	yes	no	0.913	0.384	0.380	7e-47
Q8K3A9	666	7SK snRNA methylphosphate	yes	no	0.879	0.382	0.383	8e-46
A3KQ55	645	7SK snRNA methylphosphate	yes	no	0.831	0.373	0.380	1e-45
Q9U2R0	378	Probable RNA methyltransf	yes	no	0.906	0.695	0.358	7e-42
Q9VNH1	300	Probable RNA methyltransf	yes	no	0.824	0.796	0.357	9e-36
Q9Y7L2	268	Probable RNA methyltransf	yes	no	0.751	0.813	0.326	3e-24
Q7K480	1367	Probable RNA methyltransf	no	no	0.434	0.092	0.413	1e-21
Q9VZD2	238	Probable RNA methyltransf	no	no	0.531	0.647	0.276	2e-08
Q7T0L7	255	Pre-miRNA 5'-monophosphat	N/A	no	0.586	0.666	0.234	1e-07

>sp|Q6NPC9|BIN3D_ARATH Probable RNA methyltransferase At5g51130 OS=Arabidopsis thaliana GN=At5g51130 PE=2 SV=1

 Score =  344 bits (883), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/272 (61%), Positives = 205/272 (75%), Gaps = 6/272 (2%)

Query: 20  QLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQ 79
           Q KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI 
Sbjct: 52  QSKKKKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIH 111

Query: 80  IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL-EKNV 138
           IA+KF CRSILG+DID++R+ DA+WHLRK VR +++ K     S  E  +   G  E +V
Sbjct: 112 IAKKFGCRSILGVDIDTSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSV 171

Query: 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG 198
           + +  E KA S       ++L  IVSF++ENFV  R+  +  YD ILCLSVTKW+HLNWG
Sbjct: 172 SLSNGEAKADS----AETKDLSQIVSFQKENFVQTRNLDDNRYDTILCLSVTKWVHLNWG 227

Query: 199 DDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL 258
           DDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P  FQEILL
Sbjct: 228 DDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILL 287

Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           DKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 288 DKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 318

Probable RNA methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 161/289 (55%), Gaps = 24/289 (8%)

Query: 18  AQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIIT 77
           A   KK++ K  F +GNY  YYGYR      ED R +VLK EWF G+D LD+GCN G +T
Sbjct: 403 AAGFKKQQRK--FQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLT 458

Query: 78  IQIAQKFNCRSILGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIE 129
           + IA K+    ++G+DIDS  +  A  ++R  +        +T   +           + 
Sbjct: 459 LSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 518

Query: 130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYD 182
           K      ++TA++    A       A+ ++F + V F   N+V  RD      +PE  YD
Sbjct: 519 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPE--YD 576

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATN 242
            +LCLS+TKW+HLNWGD+GL  +F RI++ LRPGGI VLEPQPW SY K + ++ET   N
Sbjct: 577 VVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKN 636

Query: 243 FQNIKLYPKEFQEILLDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           +  I+L P++F   L    +GF + E + +    ++  GF RP++LF K
Sbjct: 637 YYRIQLKPEQFSSYLTSPDVGFSSYELVAT--PHNTSKGFQRPVYLFHK 683

S-adenosyl-L-methionine-dependent methyltransferase that adds a methylphosphate cap at the 5'-end of 7SK snRNA, leading to stabilize it.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce PE=1 SV=2

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 162/292 (55%), Gaps = 37/292 (12%)

Query: 19  QQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITI 78
           QQLK       F +GNY  YYGYR      ED R +VLK EWF+G+D LD+GCN G +T+
Sbjct: 386 QQLK-------FQYGNYCKYYGYR--NPSCEDVRLRVLKPEWFQGRDVLDLGCNVGHLTL 436

Query: 79  QIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE------------ 126
            IA K+    ++G+DID   +  A    R+ +R   +E+ R  A   E            
Sbjct: 437 SIACKWGPARMVGLDIDPRLIHSA----RQNIRHYLSEELRLQAQTSEGDPGTEGEEGTI 492

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS------PEK 179
            + K      ++TA++    A       A+ ++F + V F   N+V  RD       PE 
Sbjct: 493 TVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPE- 551

Query: 180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239
            YD +LC S+TKW+HLNWGD+GL  +F RI++ LRPGGI VLEPQPW SY K + ++ET 
Sbjct: 552 -YDVVLCFSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLTETI 610

Query: 240 ATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             N+  I+L P++F   L   ++GF + E + +   +++  GF RP++LF K
Sbjct: 611 YKNYFRIQLKPEQFSSYLTSPEVGFSSYELVAT--PNNTSRGFQRPVYLFHK 660

S-adenosyl-L-methionine-dependent methyltransferase that adds a methylphosphate cap at the 5'-end of 7SK snRNA, leading to stabilize it.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3KQ55|MEPCE_DANRE 7SK snRNA methylphosphate capping enzyme OS=Danio rerio GN=mepce PE=2 SV=2

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/268 (38%), Positives = 155/268 (57%), Gaps = 27/268 (10%)

Query: 46  GLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105
           G++EDPR +V+  +WF GKD LD+GCN+G +T+ IA+ +   SI+G+DID + +  A  +
Sbjct: 376 GMSEDPRIRVMNPDWFRGKDVLDLGCNTGHLTLFIAKNWRPASIVGLDIDGSLIHAARQN 435

Query: 106 LRKI---VRTEHNEKRRAN--ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSP------ 154
           +R     V+ +H+ +   N  A R EV   G+  +K+ T+      ++  +  P      
Sbjct: 436 IRHYLSEVQVQHSRRSGENTKADRGEV--SGEEKDKDKTSKHSFPVSLRISRGPIAGPPL 493

Query: 155 AERNLFDI--------VSFKQENFVHGRD----SPEKYYDAILCLSVTKWIHLNWGDDGL 202
            E N   +        V+F + N+V   D    +  + YD ILCLSVTKW+HLNWGD GL
Sbjct: 494 PETNTHSLPPGDFPANVTFIKGNYVLESDVLLQTQREEYDVILCLSVTKWVHLNWGDAGL 553

Query: 203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG 262
              F R++K LRPGG+F+LEPQPW SY K ++++E    N+ +I+L P +F   L  ++G
Sbjct: 554 KRFFHRVYKHLRPGGLFILEPQPWSSYNKRKKLTEAICKNYHSIRLKPDQFSSFLTTEVG 613

Query: 263 FRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           F + E IG+    +   GF RPI L+ K
Sbjct: 614 FSSYELIGTS--QNYSKGFQRPISLYHK 639

S-adenosyl-L-methionine-dependent methyltransferase that adds a methylphosphate cap at the 5'-end of 7SK snRNA, leading to stabilize it.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9U2R0|BIN3D_CAEEL Probable RNA methyltransferase Y17G7B.18 OS=Caenorhabditis elegans GN=Y17G7B.18 PE=3 SV=1

 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 27/290 (9%)

Query: 9   KVEEEEKGEAQQLKKRKG--KDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDC 66
           ++ +EEK  A+  K++       + +GN+  YYG R+  G   D R  V +K+WFE K  
Sbjct: 94  QLSKEEKSAAENRKQKTEYFNKKYRYGNFDRYYGIRLNPG-ESDKRLSVFQKDWFEHKQA 152

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
           LDIGCN+G +T+ IA+ F+ R I+GIDID + +  A  ++R     E     +  AS   
Sbjct: 153 LDIGCNAGFLTLSIAKDFSPRRIIGIDIDEHLIGVARKNIRHYCDHETEVSGKFPASF-- 210

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD------SPEKY 180
                 G++    + + E         P      D + FK+EN+V   D       PE  
Sbjct: 211 ------GVQFGTVSQRNEAPRSFSTKFP------DNIWFKKENYVLESDEMLDMIQPE-- 256

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTA 240
           +D IL LS+TKWIHLNWGDDG+   F R +  L PGG  ++EPQ + SY+K  ++SE   
Sbjct: 257 FDVILALSITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAKMSEELK 316

Query: 241 TNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
            N+  I+  P++F+  L++ +GF +VE +G  G  S   GF RPI ++ K
Sbjct: 317 ANYSKIEFKPEDFEMWLIETVGFESVEKLGVVGAKSK--GFERPIDVYLK 364

Probable methyltransferase.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VNH1|BN3D2_DROME Probable RNA methyltransferase CG1239 OS=Drosophila melanogaster GN=CG1239 PE=2 SV=2

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 148/302 (49%), Gaps = 63/302 (20%)

Query: 7   ENKVEEEEKGEAQQLKKR--------KGKDV-FPFGNYKNYYGYRIGQGLNEDPRFKVL- 56
           E+ VE   +  AQ  KKR        + KD+ F +GNYK+YYG RI      D R  VL 
Sbjct: 43  ESNVEATSRPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDVLG 102

Query: 57  -KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHN 115
            + + F  K  LDIGCNSG ++IQIA+KF  +S++G+DID   + DA        +T  +
Sbjct: 103 TQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ-------KTVSH 155

Query: 116 EKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD 175
            KR A          G G+                            + F   N+V   D
Sbjct: 156 LKRHATP--------GQGIPH--------------------------IQFVHGNYVLEDD 181

Query: 176 ------SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY 229
                  P+  +D ILCLSVTKWIHLN+ D GL   F R++  LRPGG  +LEPQ +  Y
Sbjct: 182 VLLEIERPQ--FDVILCLSVTKWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGY 239

Query: 230 EKNRRVSETTATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLF 288
           ++ +++SE    N+  IK  P  F E LL  ++GF  ++ +G       K GF RPI +F
Sbjct: 240 KRRKKLSEQIRDNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIP--EHCKVGFKRPIQIF 297

Query: 289 RK 290
            K
Sbjct: 298 TK 299

Probable methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y7L2|BIN3D_SCHPO Probable RNA methyltransferase C2A9.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.10 PE=3 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 12/230 (5%)

Query: 30  FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
           F  GNY +YY  R G  +  DPR K L    F     LDIGCN+G ++ QIA  F    +
Sbjct: 4   FQHGNYHSYYSMRGGTSI-IDPRLKCLPDSLFYEASVLDIGCNNGTVSAQIASIFGASFV 62

Query: 90  LGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAIS 149
           LG+DID   +  A  HL  +  +      R   S VE     D       ++ ++   I 
Sbjct: 63  LGLDIDHVLIQKARKHLEFV--SSRIGPVRNPGSIVE-----DQFNYYPISSIKKFSRIP 115

Query: 150 RNCSPA--ERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM 207
               P   ++N    + F+  +F+  R   ++ +  IL LSV+KW+HLN  D+G+I  F 
Sbjct: 116 VQLQPPLNKQNFPHNIEFETADFL--RWESKRKFKIILALSVSKWVHLNNHDEGIIKFFG 173

Query: 208 RIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEIL 257
           +I  LL   G+ +LEPQ W SY K  +         +N+K+ P  F+ +L
Sbjct: 174 KISSLLETNGVLILEPQGWDSYLKAAKKISVFNQTPENLKIQPDAFEHLL 223

Probable methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7K480|BN3D1_DROME Probable RNA methyltransferase bin3 OS=Drosophila melanogaster GN=bin3 PE=1 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 163  VSFKQENFVHGRDS----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218
            V F+  N+V   +S      + YD ILCLSVTKWIHLN+GD+GL   F R++  LRPGG 
Sbjct: 982  VFFRHTNYVLKDESLMASDTQQYDLILCLSVTKWIHLNFGDNGLKMAFKRMFNQLRPGGK 1041

Query: 219  FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL-DKIGFRTVEDIGSGGLSSS 277
             +LE Q W SY+K + ++     N++ I+ +P +F E LL  ++GF     +G       
Sbjct: 1042 LILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNKFHEYLLSSEVGFSHSYTLGVP--RHM 1099

Query: 278  KTGFNRPIFLFRK 290
              GF RPI L+ K
Sbjct: 1100 NKGFCRPIQLYAK 1112

Probable methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VZD2|BN3D3_DROME Probable RNA methyltransferase CG11342 OS=Drosophila melanogaster GN=CG11342 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 67/221 (30%)

Query: 32  FGNYKNYYGY-----RIGQGLNEDPRFKVLK-------KEWFEGKDCLDIGCNSGIITIQ 79
           +GN+ NYY +     R+    + D     L+       K +F     LD+GCN G++T Q
Sbjct: 13  YGNFFNYYQFSSAAERVKLLPDADIWLPALEDGETQKDKPYF----ILDVGCNCGVLT-Q 67

Query: 80  IAQKF------NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG 133
           +  K+          +LG+DID   +  A         +E NE                 
Sbjct: 68  LMHKYLEERLHRSVKVLGVDIDPRLIQRA---------SEENES---------------- 102

Query: 134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWI 193
                       K +S  C     ++ D  +F+        ++ EK+ DAI C S+T WI
Sbjct: 103 -----------PKDVSYACV----DVLDDEAFESVKTYMEVNNLEKF-DAICCYSITMWI 146

Query: 194 HLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRR 234
           HLN  D GL   F++  KL     + V+EPQPW  Y+K  R
Sbjct: 147 HLNHHDQGL-RFFLQ--KLSNLAELLVVEPQPWKCYQKAER 184

Probable RNA methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7T0L7|BN3D2_XENLA Pre-miRNA 5'-monophosphate methyltransferase OS=Xenopus laevis GN=bcdin3d PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 43/213 (20%)

Query: 31  PFGNYKNYYGYRIGQG----LNEDPRFKVLKKEWFEGKDC-----LDIGCNSGIITIQIA 81
           P+GN+ NYY +   +     L  +   K+ +K             LD+GCN+G +++ + 
Sbjct: 16  PYGNFPNYYSFNPPENRISLLPAELLHKLFRKPAESDSSTQPLLGLDVGCNTGDLSVAL- 74

Query: 82  QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141
                                Y HL     TE + K    +S V V      ++ ++   
Sbjct: 75  ---------------------YNHL-----TEPHSK----SSDVPVHFLCCDIDPDLITR 104

Query: 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG 201
                      S A  ++ D  + +       +      +D   C+SVT WIHLN+GD G
Sbjct: 105 ARASNPFPDFISYATLDIMDSSAVRGPVNDFLQQFARSTFDIAFCMSVTMWIHLNYGDQG 164

Query: 202 LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRR 234
           L+T    +  L       ++EPQPW  Y    R
Sbjct: 165 LVTFLGHLANLC---DYLLVEPQPWKCYRSAAR 194

O-methyltransferase that specifically dimethylates the 5' monophosphate of pre-miRNAs, acting as a negative regulator of miRNA processing. The 5' monophosphate of pre-miRNAs is recognized by dicer1 and is required for pre-miRNAs processing: methylation at this position reduces the processing of pre-miRNAs by dicer1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224143605	321	predicted protein [Populus trichocarpa]	0.910	0.822	0.656	2e-99
225445152	286	PREDICTED: 7SK snRNA methylphosphate cap	0.975	0.989	0.631	4e-98
297792427	313	hypothetical protein ARALYDRAFT_495181 [	0.951	0.881	0.596	4e-94
357520931	293	7SK snRNA methylphosphate capping enzyme	0.906	0.897	0.642	2e-93
8843849	379	unnamed protein product [Arabidopsis tha	0.917	0.701	0.617	8e-93
388523017	278	unknown [Lotus japonicus]	0.934	0.974	0.609	1e-92
387169571	339	hypothetical protein 34G24.18 [Capsella	0.948	0.811	0.601	1e-92
18423241	318	S-adenosyl-L-methionine-dependent methyl	0.917	0.836	0.617	2e-92
387169514	318	hypothetical protein 11M19.20 [Arabidops	0.924	0.842	0.613	2e-90
351726858	243	uncharacterized protein LOC100500304 [Gl	0.8	0.954	0.641	1e-82

>gi|224143605|ref|XP_002325013.1| predicted protein [Populus trichocarpa] gi|222866447|gb|EEF03578.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/268 (65%), Positives = 213/268 (79%), Gaps = 4/268 (1%)

Query: 23  KRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQ 82
           KRK K VFPFGNY+NYYGYRI + ++ DPR KV +++WF+GKDCLDIGCNSGI+TIQIA+
Sbjct: 58  KRKHKIVFPFGNYRNYYGYRINE-VDGDPRLKVFERDWFQGKDCLDIGCNSGILTIQIAR 116

Query: 83  KFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142
           KF+C+SILGIDIDS+RV+DAYWHLRK  RTE+ EK     +R+EV  K +G +++ +A+ 
Sbjct: 117 KFHCKSILGIDIDSDRVSDAYWHLRKFARTENVEKNSTKVTRLEVKNKVNGAKRSASASS 176

Query: 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL 202
            E K  S   S  +  LFD+VSF+QENFV  +   EK YD ILCLSVTKWIHLNWGDDGL
Sbjct: 177 VETKEDSSASSKGD--LFDVVSFRQENFVQSQRPSEKQYDTILCLSVTKWIHLNWGDDGL 234

Query: 203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG 262
           ITLF +IW+LL PGGI VLEPQPW SYEKNRRVSETTA N++ I   P+ F+EILLDKIG
Sbjct: 235 ITLFSKIWRLLHPGGILVLEPQPWQSYEKNRRVSETTAMNYRTIMFRPESFREILLDKIG 294

Query: 263 FRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           FR VEDI + GLS SK GF+RPIF++ K
Sbjct: 295 FRRVEDI-TDGLSGSKAGFDRPIFVYHK 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445152|ref|XP_002284033.1| PREDICTED: 7SK snRNA methylphosphate capping enzyme [Vitis vinifera] gi|297738783|emb|CBI28028.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/288 (63%), Positives = 218/288 (75%), Gaps = 5/288 (1%)

Query: 6   MENKVEEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKD 65
           M+N  E+ EK      +KRK K++ PFGNY+NYYGYRIGQ   EDPR KVLKKEWFEGKD
Sbjct: 1   MDNN-EQAEKASGANKRKRKRKEIAPFGNYRNYYGYRIGQEFEEDPRLKVLKKEWFEGKD 59

Query: 66  CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRV 125
           CLDIGCN+G+ITI IA+KF+C+SILGIDID +RV DA+W+LRKI+R E   K   N S++
Sbjct: 60  CLDIGCNNGLITIAIAKKFHCQSILGIDIDPDRVEDAHWNLRKILRKESAGKMHLNTSKI 119

Query: 126 EVIEKGDGLEKNVTAAQ-EEKKAISRNCSPA-ERNLFDIVSFKQENFVHG-RDSPEKYYD 182
           E +E+ +GL    +A+  E+ K ISR+ S   E++L DIVSF+QENFV   R   +K Y 
Sbjct: 120 EAVERANGLHDCTSASSNEQTKDISRDFSTCKEKDLSDIVSFQQENFVQSWRPRQDKSYH 179

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATN 242
            ILCLSVTKWIHLNWGDDGLITLF++IWKLL PGGI VLEPQPW SY KNR VSE TA N
Sbjct: 180 TILCLSVTKWIHLNWGDDGLITLFVKIWKLLHPGGILVLEPQPWSSYAKNRLVSERTAAN 239

Query: 243 FQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           +  I  +P  FQEILLDK+GFR VE++ S  LS SKTGFNRPI  F+K
Sbjct: 240 YSEIIFFPNYFQEILLDKVGFRKVENLTS-SLSGSKTGFNRPILAFQK 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792427|ref|XP_002864098.1| hypothetical protein ARALYDRAFT_495181 [Arabidopsis lyrata subsp. lyrata] gi|297309933|gb|EFH40357.1| hypothetical protein ARALYDRAFT_495181 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 167/280 (59%), Positives = 209/280 (74%), Gaps = 4/280 (1%)

Query: 11  EEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIG 70
           +++++G   Q KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIG
Sbjct: 38  QKQQQGNCNQSKKKKNQEVYPFGNYRNYYGYRISHDTDEDPRLKVLKKEWFEGKDCLDIG 97

Query: 71  CNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK 130
           CNSGI+TI IA+KF CRSILG+DIDS+R+ DA+WHLRK VR +++ K     S  E  E 
Sbjct: 98  CNSGIMTIHIAKKFGCRSILGVDIDSSRIEDAHWHLRKFVRMQNSAKPSEQKSSSEGAE- 156

Query: 131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT 190
             G+ ++   +       ++  S   ++L  IVSF++ENFV  R+  E  YD ILCLSVT
Sbjct: 157 --GVHRSKEQSVSLSNGEAKTDSAETKDLSQIVSFQKENFVLTRNLDENRYDTILCLSVT 214

Query: 191 KWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP 250
           KW+HLNWGDDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P
Sbjct: 215 KWVHLNWGDDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRP 274

Query: 251 KEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             FQEILLDKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 275 DRFQEILLDKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520931|ref|XP_003630754.1| 7SK snRNA methylphosphate capping enzyme [Medicago truncatula] gi|355524776|gb|AET05230.1| 7SK snRNA methylphosphate capping enzyme [Medicago truncatula]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/266 (64%), Positives = 203/266 (76%), Gaps = 3/266 (1%)

Query: 27  KDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNC 86
           + VFP+GNYK+YY YRI +G++EDPR KV KKEWF+GKDCLDIGCNSGIITIQIA KFNC
Sbjct: 29  QQVFPYGNYKSYYNYRIAEGVDEDPRLKVFKKEWFQGKDCLDIGCNSGIITIQIALKFNC 88

Query: 87  RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE-EK 145
           RSILGIDIDS+RV DA W+LRK  R +    + +  S+++     D  E + T +     
Sbjct: 89  RSILGIDIDSDRVEDANWNLRKTDRLKSARNKPSKVSKLKDNSHTDHSENSATVSSNVNT 148

Query: 146 KAISRNCSPAER-NLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLIT 204
           K IS+  S  ++ +L +IVSF++ENFVH R  P K+YD ILCLSV+KWIHLNWGDDGLIT
Sbjct: 149 KEISKEPSSLKQIDLVNIVSFERENFVHCRHPPGKHYDTILCLSVSKWIHLNWGDDGLIT 208

Query: 205 LFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFR 264
           LF   WKLLRPGGIFVLEPQPW SYE NR  SE TA N++NIK  P+EFQEILLDKIGFR
Sbjct: 209 LFAETWKLLRPGGIFVLEPQPWKSYESNRNASEITAANYRNIKFRPEEFQEILLDKIGFR 268

Query: 265 TVEDIGSGGLSSSKTGFNRPIFLFRK 290
           TVE I S  L+ S TGFNRPI +F+K
Sbjct: 269 TVEAITS-DLTGSTTGFNRPILIFQK 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843849|dbj|BAA97375.1| unnamed protein product [Arabidopsis thaliana]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 168/272 (61%), Positives = 205/272 (75%), Gaps = 6/272 (2%)

Query: 20  QLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQ 79
           Q KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI 
Sbjct: 113 QSKKKKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIH 172

Query: 80  IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL-EKNV 138
           IA+KF CRSILG+DID++R+ DA+WHLRK VR +++ K     S  E  +   G  E +V
Sbjct: 173 IAKKFGCRSILGVDIDTSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSV 232

Query: 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG 198
           + +  E KA S       ++L  IVSF++ENFV  R+  +  YD ILCLSVTKW+HLNWG
Sbjct: 233 SLSNGEAKADS----AETKDLSQIVSFQKENFVQTRNLDDNRYDTILCLSVTKWVHLNWG 288

Query: 199 DDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL 258
           DDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P  FQEILL
Sbjct: 289 DDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILL 348

Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           DKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 349 DKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523017|gb|AFK49570.1| unknown [Lotus japonicus]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/282 (60%), Positives = 210/282 (74%), Gaps = 11/282 (3%)

Query: 11  EEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIG 70
           +++E  +    KKRK   VFP+GNYK YYGYR+ QG++EDPR KVL+KEWF+GK CLDIG
Sbjct: 6   DDDETQKHNNNKKRKL--VFPYGNYKTYYGYRLAQGMDEDPRLKVLRKEWFQGKYCLDIG 63

Query: 71  CNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK 130
           CN+G+ITIQIA KF+CR+ILGIDIDS+RV DAYW+LRK  R+      ++  ++   +E 
Sbjct: 64  CNNGLITIQIAHKFHCRTILGIDIDSDRVQDAYWNLRKTARS------KSAPAKASKLED 117

Query: 131 GDGLEKNVTA-AQEEKKAISRNCSPAER-NLFDIVSFKQENFVHGRDSPEKYYDAILCLS 188
            D  E NV   +  +    S+  S +E+ +L DIVSFK+ENFV     P K+YD ILCLS
Sbjct: 118 KDHSENNVAVVSNADTDETSKEPSSSEQIDLMDIVSFKRENFVQSWHPPGKHYDTILCLS 177

Query: 189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL 248
           V+KWIHLNWGDDGLITLF   WKLL+PGGIFVLEPQPW SY  NR VSETT  NF NI  
Sbjct: 178 VSKWIHLNWGDDGLITLFSETWKLLKPGGIFVLEPQPWNSYVSNRDVSETTIANFGNIMF 237

Query: 249 YPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
            P++FQEILLDKIGFRTVEDI S GL+ +K GFNRPI +F+K
Sbjct: 238 RPEQFQEILLDKIGFRTVEDITS-GLTGTKAGFNRPILVFQK 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169571|gb|AFJ66230.1| hypothetical protein 34G24.18 [Capsella rubella]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 213/281 (75%), Gaps = 6/281 (2%)

Query: 11  EEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIG 70
           +++++G   Q KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWF+GKDCLDIG
Sbjct: 64  KQKQQGNCNQSKKKKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFQGKDCLDIG 123

Query: 71  CNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK 130
           CNSGI+TI IA+KF CRSILG+DIDS+R+ DA+WHLRK VR +++ K     S  E  + 
Sbjct: 124 CNSGIMTIHIAKKFGCRSILGVDIDSSRIEDAHWHLRKFVRMQNSAKSSEKNSSSEGKDG 183

Query: 131 GDG-LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSV 189
             G +E++ + +  E KA +    P  ++L  IVSF++ENFV  R+  E  YD ILCLSV
Sbjct: 184 AHGSVEQSTSLSNGETKADN----PETKDLSQIVSFQKENFVLTRNLDENRYDTILCLSV 239

Query: 190 TKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLY 249
           TKW+HLNWGDDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L 
Sbjct: 240 TKWVHLNWGDDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRKIVLR 299

Query: 250 PKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           P  FQEILLDKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 300 PDSFQEILLDKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 339

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423241|ref|NP_568752.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75324339|sp|Q6NPC9.1|BIN3D_ARATH RecName: Full=Probable RNA methyltransferase At5g51130 gi|38566690|gb|AAR24235.1| At5g51130 [Arabidopsis thaliana] gi|38604062|gb|AAR24774.1| At5g51130 [Arabidopsis thaliana] gi|332008658|gb|AED96041.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/272 (61%), Positives = 205/272 (75%), Gaps = 6/272 (2%)

Query: 20  QLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQ 79
           Q KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI 
Sbjct: 52  QSKKKKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIH 111

Query: 80  IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL-EKNV 138
           IA+KF CRSILG+DID++R+ DA+WHLRK VR +++ K     S  E  +   G  E +V
Sbjct: 112 IAKKFGCRSILGVDIDTSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSV 171

Query: 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG 198
           + +  E KA S       ++L  IVSF++ENFV  R+  +  YD ILCLSVTKW+HLNWG
Sbjct: 172 SLSNGEAKADS----AETKDLSQIVSFQKENFVQTRNLDDNRYDTILCLSVTKWVHLNWG 227

Query: 199 DDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL 258
           DDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P  FQEILL
Sbjct: 228 DDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILL 287

Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           DKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 288 DKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 318

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169514|gb|AFJ66175.1| hypothetical protein 11M19.20 [Arabidopsis halleri]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/272 (61%), Positives = 205/272 (75%), Gaps = 4/272 (1%)

Query: 19  QQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITI 78
           Q  KK+K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI
Sbjct: 51  QSKKKKKNQEVYPFGNYRNYYGYRISHDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTI 110

Query: 79  QIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138
            IA++F CRSILG+DIDS+R+ DA+WHLRK VR +++ K     S  E  + G  + K  
Sbjct: 111 HIAKRFGCRSILGVDIDSSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGGH-VSKEQ 169

Query: 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG 198
           +A+    +A  +  S   ++L  IVSF++ENFV  R+  E  YD ILCLSVTKW+HLNWG
Sbjct: 170 SASLSNGEA--KTDSAETKDLSQIVSFQKENFVLTRNLDENRYDTILCLSVTKWVHLNWG 227

Query: 199 DDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL 258
           DDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P  FQEILL
Sbjct: 228 DDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILL 287

Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
           DKIGFRTVED+ S  LS +  GF+R I  F+K
Sbjct: 288 DKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 318

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726858|ref|NP_001236117.1| uncharacterized protein LOC100500304 [Glycine max] gi|255629980|gb|ACU15342.1| unknown [Glycine max]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/234 (64%), Positives = 182/234 (77%), Gaps = 2/234 (0%)

Query: 17  EAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGII 76
           E+Q+   +K K VFP+GNYK+YYGYRIGQG++EDPR KVL+KEWFEGKDCLDIGCN+GII
Sbjct: 2   ESQKQNSKKRKQVFPYGNYKSYYGYRIGQGVDEDPRLKVLRKEWFEGKDCLDIGCNNGII 61

Query: 77  TIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK 136
           TIQIAQKF C+ ILG+DIDS+RV DAYW+LRK VR +    +   AS+++  +  D  E 
Sbjct: 62  TIQIAQKFCCQRILGVDIDSDRVEDAYWNLRKTVRLKSTGNKPVKASKLQDKDHADDSEN 121

Query: 137 NVTAAQEEK-KAISR-NCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH 194
           +VT     K + IS+ + SP + +L  IVSFK+ENFV  +  P K YD ILCLSV+KWIH
Sbjct: 122 SVTTLLNVKTEEISKEHSSPEQIDLLKIVSFKRENFVQTQHPPGKQYDTILCLSVSKWIH 181

Query: 195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL 248
           LNWGDDGLITLF  +WKLLRPGGIFVLEPQPW SYE NR VSETTA N++NI +
Sbjct: 182 LNWGDDGLITLFAEVWKLLRPGGIFVLEPQPWKSYESNRNVSETTAANYRNIMI 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2176217	318	AT5G51130 [Arabidopsis thalian	0.903	0.823	0.615	4.3e-86
ZFIN|ZDB-GENE-030131-3936	645	mepce "methylphosphate capping	0.434	0.195	0.477	2.7e-49
UNIPROTKB|Q7L2J0	689	MEPCE "7SK snRNA methylphospha	0.9	0.378	0.385	2.3e-44
UNIPROTKB|F1RNM4	670	LOC100513274 "Uncharacterized	0.906	0.392	0.370	8e-44
UNIPROTKB|F1RMY9	690	LOC100513274 "Uncharacterized	0.906	0.381	0.370	1.2e-43
RGD|1560550	329	Mepce "methylphosphate capping	0.879	0.775	0.375	1.3e-43
UNIPROTKB|G3V656	660	Mepce "Protein Mepce" [Rattus	0.879	0.386	0.375	1.4e-43
MGI|MGI:106477	666	Mepce "methylphosphate capping	0.879	0.382	0.375	2.9e-43
UNIPROTKB|E2RGJ1	692	MEPCE "Uncharacterized protein	0.879	0.368	0.382	7.7e-43
ZFIN|ZDB-GENE-110411-13	629	si:ch1073-157b13.1 "si:ch1073-	0.434	0.200	0.424	6.7e-41

TAIR|locus:2176217 AT5G51130 [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 165/268 (61%), Positives = 202/268 (75%)

Query:    24 RKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQK 83
             +K ++V+PFGNY+NYYGYRI    +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI IA+K
Sbjct:    56 KKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIHIAKK 115

Query:    84 FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL-EKNVTAAQ 142
             F CRSILG+DID++R+ DA+WHLRK VR +++ K     S  E  +   G  E +V+ + 
Sbjct:   116 FGCRSILGVDIDTSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSVSLSN 175

Query:   143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL 202
              E KA S       ++L  IVSF++ENFV  R+  +  YD ILCLSVTKW+HLNWGDDGL
Sbjct:   176 GEAKADSAET----KDLSQIVSFQKENFVQTRNLDDNRYDTILCLSVTKWVHLNWGDDGL 231

Query:   203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG 262
             ITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P  FQEILLDKIG
Sbjct:   232 ITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILLDKIG 291

Query:   263 FRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             FRTVED+ S  LS +  GF+R I  F+K
Sbjct:   292 FRTVEDLTSS-LSGASKGFDRQILAFQK 318

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

ZFIN|ZDB-GENE-030131-3936 mepce "methylphosphate capping enzyme" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 2.7e-49, Sum P(2) = 2.7e-49
 Identities = 63/132 (47%), Positives = 87/132 (65%)

Query:   163 VSFKQENFVHGRD----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218
             V+F + N+V   D    +  + YD ILCLSVTKW+HLNWGD GL   F R++K LRPGG+
Sbjct:   510 VTFIKGNYVLESDVLLQTQREEYDVILCLSVTKWVHLNWGDAGLKRFFHRVYKHLRPGGL 569

Query:   219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSK 278
             F+LEPQPW SY K ++++E    N+ +I+L P +F   L  ++GF + E IG+   + SK
Sbjct:   570 FILEPQPWSSYNKRKKLTEAICKNYHSIRLKPDQFSSFLTTEVGFSSYELIGTSQ-NYSK 628

Query:   279 TGFNRPIFLFRK 290
              GF RPI L+ K
Sbjct:   629 -GFQRPISLYHK 639

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0008173 "RNA methyltransferase activity" evidence=ISS

GO:0016073 "snRNA metabolic process" evidence=ISS

GO:0040031 "snRNA modification" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q7L2J0 MEPCE "7SK snRNA methylphosphate capping enzyme" [Homo sapiens (taxid:9606)]

 Score = 469 (170.2 bits), Expect = 2.3e-44, P = 2.3e-44
 Identities = 109/283 (38%), Positives = 159/283 (56%)

Query:    24 RKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQK 83
             +K +  F +GNY  YYGYR      ED R +VLK EWF G+D LD+GCN G +T+ IA K
Sbjct:   407 KKQQRKFQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACK 464

Query:    84 FNCRSILGIDIDSNRVADAYWHLRKIVRTE--------HNEKRRANASRVEVIEKGDGLE 135
             +    ++G+DIDS  +  A  ++R  +  E          +           + K     
Sbjct:   465 WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFP 524

Query:   136 KNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYDAILCLS 188
              ++TA++    A       A+ ++F + V F   N+V  RD      +PE  YD +LCLS
Sbjct:   525 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPE--YDVVLCLS 582

Query:   189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL 248
             +TKW+HLNWGD+GL  +F RI++ LRPGGI VLEPQPW SY K + ++ET   N+  I+L
Sbjct:   583 LTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL 642

Query:   249 YPKEFQEILLDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
              P++F   L    +GF + E + +   ++SK GF RP++LF K
Sbjct:   643 KPEQFSSYLTSPDVGFSSYELVATPH-NTSK-GFQRPVYLFHK 683

GO:0008173 "RNA methyltransferase activity" evidence=IDA

GO:0040031 "snRNA modification" evidence=IDA

GO:0016073 "snRNA metabolic process" evidence=IDA

GO:0001510 "RNA methylation" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

UNIPROTKB|F1RNM4 LOC100513274 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 463 (168.0 bits), Expect = 8.0e-44, P = 8.0e-44
 Identities = 104/281 (37%), Positives = 160/281 (56%)

Query:    24 RKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQK 83
             +K +  F +GNY  YYGYR      ED R +V+K EWF G+D LD+GCN G +T+ IA K
Sbjct:   388 KKQQCKFQYGNYCKYYGYR--NPSCEDGRLRVMKPEWFRGRDVLDLGCNVGHLTLSIACK 445

Query:    84 FNCRSILGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIEKGDGLE 135
             +    ++G+DID + +  A  ++R  +        +T   +           ++K     
Sbjct:   446 WGPSRMVGLDIDPHLIHSARQNIRHYLSEELRQPPQTSEGDPGTEGEEGTSTVQKRSCFP 505

Query:   136 KNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD----SPEKYYDAILCLSVT 190
              ++TA++    A       A+ ++F + V F   N+V  RD    + +  YD +LCLS+T
Sbjct:   506 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVEAQKPEYDVVLCLSLT 565

Query:   191 KWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP 250
             KW+HLNWGD+GL  +F RI+  LRPGGI VLEPQPW +Y K + ++ET   N+  I+L P
Sbjct:   566 KWVHLNWGDEGLKRMFRRIYLHLRPGGILVLEPQPWSTYGKRKTLTETIYKNYYRIQLKP 625

Query:   251 KEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             ++F   L   ++GF + E + +   ++SK GF RP++LF K
Sbjct:   626 EQFSSYLTSPEVGFSSYELVATPH-NTSK-GFQRPVYLFHK 664

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1RMY9 LOC100513274 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 463 (168.0 bits), Expect = 1.2e-43, P = 1.2e-43
 Identities = 104/281 (37%), Positives = 160/281 (56%)

Query:    24 RKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQK 83
             +K +  F +GNY  YYGYR      ED R +V+K EWF G+D LD+GCN G +T+ IA K
Sbjct:   408 KKQQCKFQYGNYCKYYGYR--NPSCEDGRLRVMKPEWFRGRDVLDLGCNVGHLTLSIACK 465

Query:    84 FNCRSILGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIEKGDGLE 135
             +    ++G+DID + +  A  ++R  +        +T   +           ++K     
Sbjct:   466 WGPSRMVGLDIDPHLIHSARQNIRHYLSEELRQPPQTSEGDPGTEGEEGTSTVQKRSCFP 525

Query:   136 KNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD----SPEKYYDAILCLSVT 190
              ++TA++    A       A+ ++F + V F   N+V  RD    + +  YD +LCLS+T
Sbjct:   526 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVEAQKPEYDVVLCLSLT 585

Query:   191 KWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP 250
             KW+HLNWGD+GL  +F RI+  LRPGGI VLEPQPW +Y K + ++ET   N+  I+L P
Sbjct:   586 KWVHLNWGDEGLKRMFRRIYLHLRPGGILVLEPQPWSTYGKRKTLTETIYKNYYRIQLKP 645

Query:   251 KEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             ++F   L   ++GF + E + +   ++SK GF RP++LF K
Sbjct:   646 EQFSSYLTSPEVGFSSYELVATPH-NTSK-GFQRPVYLFHK 684

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1560550 Mepce "methylphosphate capping enzyme" [Rattus norvegicus (taxid:10116)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 104/277 (37%), Positives = 155/277 (55%)

Query:    30 FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
             F +GNY  YYGYR      ED R +VLK EWF+G+D LD+GCN G +T+ IA K+    +
Sbjct:    53 FQYGNYCKYYGYR--NPSCEDMRLRVLKPEWFQGRDVLDLGCNVGHLTLSIACKWGPARM 110

Query:    90 LGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141
             +G+DID   +  A  ++R  +        +T   +           + K      ++TA+
Sbjct:   111 VGLDIDPRLIHSARQNIRHYLSEELRLQAQTSEGDPGTEGEEGTTTVRKRSCFPASLTAS 170

Query:   142 QEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIH 194
             +    A       A+ ++F + V F   N+V  RD       PE  YD +LC S+TKW+H
Sbjct:   171 RGPIAAPHLPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPE--YDVVLCFSLTKWVH 228

Query:   195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQ 254
             LNWGD+GL  +F RI++ LRPGGI VLEPQPW SY + + ++ET   N+  I+L P++F 
Sbjct:   229 LNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCRRKSLTETIYKNYFRIQLKPEQFS 288

Query:   255 EILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
               L   ++GF + E + +   S++  GF RP++LF K
Sbjct:   289 SYLTSPEVGFSSYELVATP--SNTSRGFQRPVYLFHK 323

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001510 "RNA methylation" evidence=ISO

GO:0008173 "RNA methyltransferase activity" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016073 "snRNA metabolic process" evidence=ISO

GO:0035562 "negative regulation of chromatin binding" evidence=ISO

GO:0040031 "snRNA modification" evidence=ISO

GO:1900087 "positive regulation of G1/S transition of mitotic cell cycle" evidence=ISO

UNIPROTKB|G3V656 Mepce "Protein Mepce" [Rattus norvegicus (taxid:10116)]

 Score = 460 (167.0 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 104/277 (37%), Positives = 155/277 (55%)

Query:    30 FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
             F +GNY  YYGYR      ED R +VLK EWF+G+D LD+GCN G +T+ IA K+    +
Sbjct:   384 FQYGNYCKYYGYR--NPSCEDMRLRVLKPEWFQGRDVLDLGCNVGHLTLSIACKWGPARM 441

Query:    90 LGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141
             +G+DID   +  A  ++R  +        +T   +           + K      ++TA+
Sbjct:   442 VGLDIDPRLIHSARQNIRHYLSEELRLQAQTSEGDPGTEGEEGTTTVRKRSCFPASLTAS 501

Query:   142 QEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIH 194
             +    A       A+ ++F + V F   N+V  RD       PE  YD +LC S+TKW+H
Sbjct:   502 RGPIAAPHLPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPE--YDVVLCFSLTKWVH 559

Query:   195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQ 254
             LNWGD+GL  +F RI++ LRPGGI VLEPQPW SY + + ++ET   N+  I+L P++F 
Sbjct:   560 LNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCRRKSLTETIYKNYFRIQLKPEQFS 619

Query:   255 EILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
               L   ++GF + E + +   S++  GF RP++LF K
Sbjct:   620 SYLTSPEVGFSSYELVATP--SNTSRGFQRPVYLFHK 654

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:106477 Mepce "methylphosphate capping enzyme" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 104/277 (37%), Positives = 155/277 (55%)

Query:    30 FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
             F +GNY  YYGYR      ED R +VLK EWF+G+D LD+GCN G +T+ IA K+    +
Sbjct:   390 FQYGNYCKYYGYR--NPSCEDVRLRVLKPEWFQGRDVLDLGCNVGHLTLSIACKWGPARM 447

Query:    90 LGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141
             +G+DID   +  A  ++R  +        +T   +           + K      ++TA+
Sbjct:   448 VGLDIDPRLIHSARQNIRHYLSEELRLQAQTSEGDPGTEGEEGTITVRKRSCFPASLTAS 507

Query:   142 QEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIH 194
             +    A       A+ ++F + V F   N+V  RD       PE  YD +LC S+TKW+H
Sbjct:   508 RGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPE--YDVVLCFSLTKWVH 565

Query:   195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQ 254
             LNWGD+GL  +F RI++ LRPGGI VLEPQPW SY K + ++ET   N+  I+L P++F 
Sbjct:   566 LNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLTETIYKNYFRIQLKPEQFS 625

Query:   255 EILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
               L   ++GF + E + +   +++  GF RP++LF K
Sbjct:   626 SYLTSPEVGFSSYELVATP--NNTSRGFQRPVYLFHK 660

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0001510 "RNA methylation" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016073 "snRNA metabolic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0035562 "negative regulation of chromatin binding" evidence=IGI

GO:0040031 "snRNA modification" evidence=ISO

GO:1900087 "positive regulation of G1/S transition of mitotic cell cycle" evidence=IMP

UNIPROTKB|E2RGJ1 MEPCE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 7.7e-43, P = 7.7e-43
 Identities = 106/277 (38%), Positives = 154/277 (55%)

Query:    30 FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
             F +GNY  YYGYR      ED R +VLK EWF G+D LD+GCN G +T+ IA K+    +
Sbjct:   416 FQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRM 473

Query:    90 LGIDIDSNRVADAYWHLRKIVRTE-----HNEKRRANASRVE---VIEKGDGLEKNVTAA 141
             +G+DIDS  +  A  ++R  +  E        +    A   E    + K      ++TA+
Sbjct:   474 VGLDIDSRLIHSARQNIRHYLSEELRLPSQTSEGDPGAESEEGTITVRKRSCFPASLTAS 533

Query:   142 QEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYDAILCLSVTKWIH 194
             +    A       A+ ++F + V F   N+V  RD      +PE  YD +LCLS+TKW+H
Sbjct:   534 RGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVEAQTPE--YDVVLCLSLTKWVH 591

Query:   195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQ 254
             LNWGD+GL  +F RI++ L PGGI VLEPQPW SY K + ++ET   N+  I+L P+ F 
Sbjct:   592 LNWGDEGLKRMFRRIYRHLHPGGILVLEPQPWSSYSKRKTLTETIYKNYYRIQLRPEHFS 651

Query:   255 EILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
               L   ++GF + E + +    ++  GF R ++LF K
Sbjct:   652 SYLTSPEVGFSSYELVATP--HNTSRGFQRSVYLFHK 686

GO:0040031 "snRNA modification" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-110411-13 si:ch1073-157b13.1 "si:ch1073-157b13.1" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
 Identities = 56/132 (42%), Positives = 85/132 (64%)

Query:   163 VSFKQENFVHGRD----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218
             V F + ++V   D    S    YD ILCLS+TKW+HLN+GD G+  LF RI++ L PGG+
Sbjct:   493 VCFLKGDYVPDSDAEVVSQSAEYDVILCLSLTKWVHLNYGDAGIQRLFGRIYRHLLPGGV 552

Query:   219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSK 278
              +LEPQPW SY +++R+++ T  N+ +I+L P +F   L+ ++GF + E IG+    +S 
Sbjct:   553 LILEPQPWSSYSRHKRLTDVTRRNYSSIRLKPDKFSSFLMAEVGFSSYELIGTP--RASP 610

Query:   279 TGFNRPIFLFRK 290
              G  R ++LF K
Sbjct:   611 KGLQRSVYLFHK 622

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NPC9	BIN3D_ARATH	2, ., 1, ., 1, ., -	0.6176	0.9172	0.8364	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
pfam06859	110	pfam06859, Bin3, Bicoid-interacting protein 3 (Bin	1e-48
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	9e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	6e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-05
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	8e-05
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-04
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	5e-04
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.002
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	0.003

>gnl|CDD|148462 pfam06859, Bin3, Bicoid-interacting protein 3 (Bin3)

 Score =  156 bits (397), Expect = 1e-48
 Identities = 60/111 (54%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTA 240
           +D ILCLSVTKW+HLNWGD+GL   F RI++LLRPGGI +LEPQPW SY+K +++SET  
Sbjct: 2   FDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILILEPQPWDSYKKRKKLSETIY 61

Query: 241 TNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
            N++ IKL P +F+E LL  ++GF + E +G    +++  GF RPI++F K
Sbjct: 62  KNYERIKLKPDQFEEYLLSPEVGFSSYELVGV--PNNTSKGFKRPIYIFHK 110

This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif. Length = 110

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 59/157 (37%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
           LDIGC +G + I++A+ F    + G+D+    +  A                R NA    
Sbjct: 6   LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA----------------RENA---- 45

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
                             K A+    +  + +  D +   +             +DA+  
Sbjct: 46  ------------------KLALGPRITFVQGDAPDALDLLEG------------FDAVFI 75

Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223
                      G   L+ L   +  LL+PGG  VL  
Sbjct: 76  ---------GGGGGDLLELLDALASLLKPGGRLVLNA 103

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 55/153 (35%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
           LDIGC +G +   + +        G+DI    +  A                  +A RV 
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAA--------AERLAALGLLDAVRVR 52

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
           +                              +  D+                  +D ++ 
Sbjct: 53  LD---------------------------VLDAIDLDPGS--------------FDVVVA 71

Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219
            +V   +H +  D     +   + +LL+PGG+ 
Sbjct: 72  SNV---LH-HLAD--PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 55/156 (35%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
           LD+GC +G + + +A     R + G+DI    +       RK             A  VE
Sbjct: 3   LDLGCGTGALALALASGPGAR-VTGVDISPVALE----LARKA-------AAALLADNVE 50

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
           V+ KGD  E                                          ++ +D I+ 
Sbjct: 51  VL-KGDAEE-------------------------------------LPPEADESFDVIIS 72

Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222
                 +  +              +LL+PGG+ VL 
Sbjct: 73  DPPLHHLVEDLAR-----FLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 31/162 (19%), Positives = 47/162 (29%), Gaps = 52/162 (32%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
           G   LD G  SG   +  A+      ++G+++D    A                     A
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAA----------LARRRLALAGLA 50

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQEN--FVHGRDSPEKY 180
            RV V+  GD  E                        FD+V     N  +      P+  
Sbjct: 51  PRVRVVV-GDARE----------------LLELPDGSFDLVLG---NPPYGPRAGDPKDN 90

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMR-IWKLLRPGGIFVL 221
            D                   L   F+    +LL+PGG+ V+
Sbjct: 91  RD-------------------LYDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 42.8 bits (102), Expect = 8e-05
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 61  FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS 96
             GK  LD+GC SGI+ I  A K   + +L +DID 
Sbjct: 118 LPGKTVLDVGCGSGILAI-AAAKLGAKKVLAVDIDP 152

Length = 250

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRV 99
           +GK  LD+GC SGI+ I  A K   + ++G+DID   V
Sbjct: 162 KGKTVLDVGCGSGILAI-AAAKLGAKKVVGVDIDPQAV 198

Length = 300

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 31  PFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSIL 90
             G++  +        + ED            G   LDIGCN+G  +I++ ++     +L
Sbjct: 28  FLGDFPAFKWREFAHAIPED----------LSGWSVLDIGCNAGFYSIEMKRR-GAGRVL 76

Query: 91  GIDIDSNRVADAYW 104
           GID D   +A A +
Sbjct: 77  GIDSDPRYLAQARF 90

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
            DIG  +G ITI+ A       ++ I+ D             +   E N   R     +E
Sbjct: 39  WDIGAGTGSITIEWALAGPSGRVIAIERDEEA----------LELIERN-AARFGVDNLE 87

Query: 127 VIEKGDGLE 135
           V+E GD  E
Sbjct: 88  VVE-GDAPE 95

Length = 187

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADA 102
           LD+GC +G++   +A++   R + G+D+    +A A
Sbjct: 1   LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALA 35

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG2899	288	consensus Predicted methyltransferase [General fun	100.0
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.68
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.68
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.67
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.67
PLN02244	340	tocopherol O-methyltransferase	99.66
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.66
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.66
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.65
PLN02336	475	phosphoethanolamine N-methyltransferase	99.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.62
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.62
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.62
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.62
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.62
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.61
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.6
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.6
COG2890	280	HemK Methylase of polypeptide chain release factor	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.57
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.56
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.56
PLN02490	340	MPBQ/MSBQ methyltransferase	99.56
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.56
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.56
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
PRK08317	241	hypothetical protein; Provisional	99.54
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.54
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.54
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.53
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.53
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.53
PRK11207	197	tellurite resistance protein TehB; Provisional	99.53
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.52
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.52
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.51
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.5
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.49
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.49
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.48
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.48
PLN03075	296	nicotianamine synthase; Provisional	99.47
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.47
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.46
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.46
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.45
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.45
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.45
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.45
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.44
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.44
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.43
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.42
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.42
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.42
PRK12335	287	tellurite resistance protein TehB; Provisional	99.39
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.39
PRK04266	226	fibrillarin; Provisional	99.39
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.39
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.38
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.38
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.38
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.38
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.38
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.37
PRK06922	677	hypothetical protein; Provisional	99.37
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.36
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.36
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.36
PLN02672	1082	methionine S-methyltransferase	99.35
PLN02336	475	phosphoethanolamine N-methyltransferase	99.35
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.35
PRK05785	226	hypothetical protein; Provisional	99.34
COG4123	248	Predicted O-methyltransferase [General function pr	99.34
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.34
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.32
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.32
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.31
PRK14968	188	putative methyltransferase; Provisional	99.31
PRK07402	196	precorrin-6B methylase; Provisional	99.31
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.31
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.3
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.28
PRK06202	232	hypothetical protein; Provisional	99.28
KOG1271	227	consensus Methyltransferases [General function pre	99.24
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.23
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.22
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.22
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.22
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.21
PRK14967	223	putative methyltransferase; Provisional	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.2
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.19
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.18
TIGR03438	301	probable methyltransferase. This model represents	99.17
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.16
PTZ00146	293	fibrillarin; Provisional	99.16
KOG4300	252	consensus Predicted methyltransferase [General fun	99.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.13
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.12
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.12
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.11
PHA03411	279	putative methyltransferase; Provisional	99.11
KOG3010	261	consensus Methyltransferase [General function pred	99.11
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.09
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.09
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.08
PRK04457	262	spermidine synthase; Provisional	99.07
KOG2361	264	consensus Predicted methyltransferase [General fun	99.05
PRK00811	283	spermidine synthase; Provisional	99.04
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.04
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.02
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.02
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.01
KOG2904	328	consensus Predicted methyltransferase [General fun	98.99
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.98
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.98
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.98
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.97
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.97
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.96
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.96
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.94
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.94
TIGR00438	188	rrmJ cell division protein FtsJ.	98.94
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.94
COG4122	219	Predicted O-methyltransferase [General function pr	98.91
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.9
PLN02476	278	O-methyltransferase	98.9
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.9
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.89
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.88
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.87
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.87
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.84
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.84
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.84
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.82
PLN02366	308	spermidine synthase	98.82
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.79
PRK03612	521	spermidine synthase; Provisional	98.77
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.77
PHA03412	241	putative methyltransferase; Provisional	98.75
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.74
PRK01581	374	speE spermidine synthase; Validated	98.72
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.72
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.71
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.7
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.7
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.69
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.68
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.67
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.63
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.61
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.6
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.6
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.59
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.53
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.52
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.51
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.5
PLN02823	336	spermine synthase	98.5
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.48
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.42
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.4
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.38
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.37
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.36
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.31
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.3
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.3
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.3
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.29
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.26
KOG2940	325	consensus Predicted methyltransferase [General fun	98.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.25
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.25
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.24
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.24
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.24
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.24
COG2521	287	Predicted archaeal methyltransferase [General func	98.23
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.2
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.19
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.17
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.16
PRK04148	134	hypothetical protein; Provisional	98.14
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.14
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.13
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.12
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.12
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.1
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.06
PRK00536	262	speE spermidine synthase; Provisional	98.04
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.03
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.02
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.01
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.99
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.96
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.94
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.94
COG2520	341	Predicted methyltransferase [General function pred	97.93
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.93
COG3897	218	Predicted methyltransferase [General function pred	97.93
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.92
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.91
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.91
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.88
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.86
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.85
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.84
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.78
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.78
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.77
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.72
KOG1331	293	consensus Predicted methyltransferase [General fun	97.66
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.62
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.56
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.54
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.53
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.49
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.47
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.43
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.42
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.42
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.4
KOG2730	263	consensus Methylase [General function prediction o	97.29
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.23
COG4076	252	Predicted RNA methylase [General function predicti	97.15
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.0
PF13679	141	Methyltransf_32: Methyltransferase domain	97.0
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.95
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.92
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.92
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.88
COG4798	238	Predicted methyltransferase [General function pred	96.79
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.77
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.76
KOG3115	249	consensus Methyltransferase-like protein [General	96.68
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.64
COG0286	489	HsdM Type I restriction-modification system methyl	96.56
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.44
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.43
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.2
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.09
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.95
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.87
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.83
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.76
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.73
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.63
PRK10742	250	putative methyltransferase; Provisional	95.53
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.42
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.32
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.3
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	94.96
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.7
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.43
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	93.87
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.85
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.8
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.39
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.38
PF03269	177	DUF268: Caenorhabditis protein of unknown function	93.23
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.2
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.7
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	92.67
PRK11524	284	putative methyltransferase; Provisional	92.66
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	92.64
KOG1501	636	consensus Arginine N-methyltransferase [General fu	92.39
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	92.26
PRK13699	227	putative methylase; Provisional	92.14
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	92.13
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.77
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.65
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	91.62
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.52
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.41
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	91.34
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.33
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.13
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.03
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.98
PHA01634	156	hypothetical protein	90.6
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	90.05
KOG2671	421	consensus Putative RNA methylase [Replication, rec	89.86
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	89.78
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.72
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	89.64
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.41
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	89.3
COG4301	321	Uncharacterized conserved protein [Function unknow	89.02
PLN02740	381	Alcohol dehydrogenase-like	88.64
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.59
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	88.46
KOG4058	199	consensus Uncharacterized conserved protein [Funct	87.93
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	87.81
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	87.23
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	86.39
PLN02827	378	Alcohol dehydrogenase-like	86.25
KOG2920	282	consensus Predicted methyltransferase [General fun	86.05
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	85.63
KOG2352	482	consensus Predicted spermine/spermidine synthase [	85.39
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	84.85
PRK10083	339	putative oxidoreductase; Provisional	84.72
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.93
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.71
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	83.54
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	82.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.79
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	82.78
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	82.65
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	82.59
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	82.17
PTZ00357	1072	methyltransferase; Provisional	81.43
KOG2078	495	consensus tRNA modification enzyme [RNA processing	81.43
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	81.3
COG1568	354	Predicted methyltransferases [General function pre	80.9
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	80.79
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	80.68
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	80.25
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	80.11

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=9.6e-35  Score=260.34  Aligned_cols=241  Identities=46%  Similarity=0.804  Sum_probs=191.1

Q ss_pred             CccccccccccccccccCCCCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           28 DVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      ..|+||||.+||+++ ......++||..+.+.|..+..+|||||.+|.+++.||+.+++..|+|+||++..++.|+++++
T Consensus        25 ~~~~~GNf~~YY~~r-~~~~~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   25 KPYPYGNFDNYYGFR-LNPGDSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             CCCCcCCccchhhcc-cCCCCCChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            449999999999999 5777888999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHhhhhhhhhhhhchhhhhhccCCcc-----hhhhhHHHHHHhh-hcCCCccccCcCcceeEeecccccC----CCCC
Q 047406          108 KIVRTEHNEKRRANASRVEVIEKGDGLE-----KNVTAAQEEKKAI-SRNCSPAERNLFDIVSFKQENFVHG----RDSP  177 (290)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~  177 (290)
                      .-...+-..             .++.+.     .+..++  ..++. .+..     ...+++.|...|+.-.    +...
T Consensus       104 ~~~~~~~~~-------------~~~~~~~~~~~~~~is~--~~~a~~a~t~-----~~p~n~~f~~~n~vle~~dfl~~~  163 (288)
T KOG2899|consen  104 FPCDHETEV-------------SGKFPASFGVQFGPISQ--RNEADRAFTT-----DFPDNVWFQKENYVLESDDFLDMI  163 (288)
T ss_pred             ccccccccc-------------cCCCccccccccccccc--cccccccccc-----cCCcchhcccccEEEecchhhhhc
Confidence            522111110             011111     111111  11111 1112     2223344444443321    1124


Q ss_pred             CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHH
Q 047406          178 EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEIL  257 (290)
Q Consensus       178 ~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  257 (290)
                      ...||+|+|..+..|+||+|+++++.++|.+++++|.|||+|+++++||.||.++++..+.+..++..+.+.|+.|...+
T Consensus       164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l  243 (288)
T KOG2899|consen  164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWL  243 (288)
T ss_pred             cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             HHH-cCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          258 LDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       258 l~~-~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                      .+. .||+.++.... .++..+++|.|+|.+|+|
T Consensus       244 ~q~~vgle~~e~~~~-~~~~~skgf~R~i~~y~K  276 (288)
T KOG2899|consen  244 NQIVVGLESVEDLGL-IVSAASKGFDRPILLYRK  276 (288)
T ss_pred             hhhhhheeeeccccc-cccccCccccceeeeeec
Confidence            776 79999888875 466778999999999997

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=99.82  E-value=3.9e-21  Score=154.15  Aligned_cols=109  Identities=60%  Similarity=1.189  Sum_probs=78.6

Q ss_pred             ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHH
Q 047406          180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLD  259 (290)
Q Consensus       180 ~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  259 (290)
                      .||+|+|..|+.|+||+|||+++..+|.+++.+|+|||+|+++++||.||..+.+..+.+..+|..+.+.|+.|...|++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~   80 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE   80 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999997777


Q ss_pred             -HcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          260 -KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       260 -~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                       ..||..++.+..  ...+..||+|||.+|+|
T Consensus        81 ~evGF~~~e~~~~--~~~~~~gF~RpI~lf~K  110 (110)
T PF06859_consen   81 PEVGFSSVEELGV--PENSSKGFDRPIYLFRK  110 (110)
T ss_dssp             TTT---EEEEE---------------EEEEE-
T ss_pred             cccceEEEEEccc--CCCCCCCCCCcEEEEeC
Confidence             589999997776  55667899999999997

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=2.7e-16  Score=124.52  Aligned_cols=109  Identities=26%  Similarity=0.447  Sum_probs=89.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      |+.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|++++..                                 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------------------------   47 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---------------------------------   47 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---------------------------------
Confidence            57899999999999999999977888999999999999999998743                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhh-hhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTK-WIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~-~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                     .....++.+.+.|+ ........+||+|++.. +++ +++    .+....++.++.+.|+|||++
T Consensus        48 ---------------~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~----~~~~~~~l~~~~~~L~pgG~l  107 (112)
T PF12847_consen   48 ---------------EGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLP----LDERRRVLERIRRLLKPGGRL  107 (112)
T ss_dssp             ---------------TTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSGGGCCH----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------------cCCCCCeEEEECcc-ccCcccCCCCCEEEECCCccccccc----hhHHHHHHHHHHHhcCCCcEE
Confidence                           33456799999999 32233456799999998 554 222    267789999999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       108 vi~~  111 (112)
T PF12847_consen  108 VINT  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9963

...

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.68  E-value=3.6e-15  Score=145.09  Aligned_cols=192  Identities=21%  Similarity=0.292  Sum_probs=131.6

Q ss_pred             hhhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhccCCCcEEEecCCCChhhHHHHh
Q 047406           13 EEKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEWFEGKDCLDIGCNSGIITIQIAQ   82 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~~~~~~vLDiGcG~G~~~~~la~   82 (290)
                      .++-.....|+.++. .+|+.| +.+||+..|  .+...   ||      ++.+...+.++.+|||+|||+|.+++.++.
T Consensus       195 ~~~~~~~v~RR~~gePlqYIlG-~~~F~G~~f--~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~  271 (423)
T PRK14966        195 RQRADRLAQRRLNGEPVAYILG-VREFYGRRF--AVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVAL  271 (423)
T ss_pred             HHHHHHHHHHHHcCCCceeEee-eeeecCcEE--EeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHH
Confidence            344444454555555 999999 789999777  33322   33      233333445677999999999999999998


Q ss_pred             HcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcc
Q 047406           83 KFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDI  162 (290)
Q Consensus        83 ~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (290)
                      ..+..+|+++|+|+.+++.|++++..                                                .+.  +
T Consensus       272 ~~p~a~VtAVDiS~~ALe~AreNa~~------------------------------------------------~g~--r  301 (423)
T PRK14966        272 ERPDAFVRASDISPPALETARKNAAD------------------------------------------------LGA--R  301 (423)
T ss_pred             hCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC--c
Confidence            88888999999999999999998765                                                222  5


Q ss_pred             eeEeecccccCCCCCCCceeEEEEchhh-------------h---hhhhcCCchHH---HHHHHHHHhhcCCCcEEEEee
Q 047406          163 VSFKQENFVHGRDSPEKYYDAILCLSVT-------------K---WIHLNWGDDGL---ITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       163 i~~~~~d~~~~~~~~~~~fD~I~~~~vl-------------~---~~~l~~~~~~~---~~~l~~~~~~LkpgG~l~i~~  223 (290)
                      +.+.+.|+.+......++||+|+|+.--             .   ...++.+.+++   +.++..+.+.|+|||.++++.
T Consensus       302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8889999865311123579999995321             0   12233344444   588888999999999999986


Q ss_pred             CCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCccee
Q 047406          224 QPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIF  286 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~  286 (290)
                      +.                       ...+-...++.+.||..+++..+      -.|..|.+.
T Consensus       382 G~-----------------------~Q~e~V~~ll~~~Gf~~v~v~kD------l~G~dR~v~  415 (423)
T PRK14966        382 GF-----------------------DQGAAVRGVLAENGFSGVETLPD------LAGLDRVTL  415 (423)
T ss_pred             Cc-----------------------cHHHHHHHHHHHCCCcEEEEEEc------CCCCcEEEE
Confidence            51                       11222333788899998887766      344555544

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=8.5e-16  Score=139.70  Aligned_cols=104  Identities=20%  Similarity=0.433  Sum_probs=93.8

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +|.+|||||||||.++..+++..+..+|+++|+|+.||+.|++.+..                                 
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~---------------------------------   97 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK---------------------------------   97 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc---------------------------------
Confidence            79999999999999999999998877999999999999999997654                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .+... ++|..+|+.+ +|+++.+||+|.|.+.++++      .+.+..|++++|+|||||.+++
T Consensus        98 ---------------~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~fglrnv------~d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226          98 ---------------KGVQN-VEFVVGDAEN-LPFPDNSFDAVTISFGLRNV------TDIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             ---------------cCccc-eEEEEechhh-CCCCCCccCEEEeeehhhcC------CCHHHHHHHHHHhhcCCeEEEE
Confidence                           23333 9999999977 79999999999999999877      4789999999999999998888

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.67  E-value=1e-15  Score=139.62  Aligned_cols=154  Identities=19%  Similarity=0.282  Sum_probs=109.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++++..                                
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~--------------------------------   88 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEA--------------------------------   88 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            35679999999999999999886  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+.+.|+.+..+.+.++||+|+|..+++|+      .+...++.++.++|+|||+++
T Consensus        89 ----------------~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~------~~~~~~l~~~~~~LkpgG~l~  146 (255)
T PRK11036         89 ----------------KGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV------ADPKSVLQTLWSVLRPGGALS  146 (255)
T ss_pred             ----------------cCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh------CCHHHHHHHHHHHcCCCeEEE
Confidence                            3344568888888866323456789999999999877      355789999999999999999


Q ss_pred             EeeCCCchh-hhh------hhhhhhhh----cc-ccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSY-EKN------RRVSETTA----TN-FQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~-~~~------~~~~~~~~----~~-~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +...+.... ...      ........    .. .+...+.++++.+ +++++||+++...+.
T Consensus       147 i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~-~l~~aGf~~~~~~gi  208 (255)
T PRK11036        147 LMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQ-WLEEAGWQIMGKTGV  208 (255)
T ss_pred             EEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHH-HHHHCCCeEeeeeeE
Confidence            864332211 000      00000000    00 1112355666766 899999999876554

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.67  E-value=1.4e-15  Score=139.77  Aligned_cols=111  Identities=17%  Similarity=0.288  Sum_probs=89.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..++...+ ..+|+|+|+|+++++.|+......                             
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~-----------------------------  121 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK-----------------------------  121 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-----------------------------
Confidence            35788999999999999998888754 458999999999999998754210                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                       ......++.+.+.|..+ ++.++++||+|+|..+++++      ++...++.++.++|+|||.
T Consensus       122 -----------------~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~~~l~~~------~d~~~~l~ei~rvLkpGG~  177 (261)
T PLN02233        122 -----------------AKSCYKNIEWIEGDATD-LPFDDCYFDAITMGYGLRNV------VDRLKAMQEMYRVLKPGSR  177 (261)
T ss_pred             -----------------hhccCCCeEEEEccccc-CCCCCCCEeEEEEecccccC------CCHHHHHHHHHHHcCcCcE
Confidence                             01122358899999866 57777899999999999765      3678999999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       178 l~i~d  182 (261)
T PLN02233        178 VSILD  182 (261)
T ss_pred             EEEEE
Confidence            98854

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.67  E-value=3.4e-16  Score=142.04  Aligned_cols=106  Identities=23%  Similarity=0.446  Sum_probs=79.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..+|.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++.+..                              
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------------------------   94 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------------------------   94 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------------------------
Confidence            46789999999999999999988754 46999999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+. .++++.++|..+ +|.++++||+|+|.+.++.+      .+..+.+++++++|||||.
T Consensus        95 ------------------~~~-~~i~~v~~da~~-lp~~d~sfD~v~~~fglrn~------~d~~~~l~E~~RVLkPGG~  148 (233)
T PF01209_consen   95 ------------------EGL-QNIEFVQGDAED-LPFPDNSFDAVTCSFGLRNF------PDRERALREMYRVLKPGGR  148 (233)
T ss_dssp             ------------------TT---SEEEEE-BTTB---S-TT-EEEEEEES-GGG-------SSHHHHHHHHHHHEEEEEE
T ss_pred             ------------------hCC-CCeeEEEcCHHH-hcCCCCceeEEEHHhhHHhh------CCHHHHHHHHHHHcCCCeE
Confidence                              222 269999999977 78889999999999998655      4578899999999999999


Q ss_pred             EEE
Q 047406          219 FVL  221 (290)
Q Consensus       219 l~i  221 (290)
                      +++
T Consensus       149 l~i  151 (233)
T PF01209_consen  149 LVI  151 (233)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            988

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02244 tocopherol O-methyltransferase

Probab=99.66  E-value=2.2e-15  Score=143.55  Aligned_cols=153  Identities=15%  Similarity=0.265  Sum_probs=110.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..+++.+ ..+|+|+|+|+.+++.|+.....                                
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~--------------------------------  163 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAA--------------------------------  163 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            467899999999999999999876 45999999999999999887654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.|...|+.+ .+.++++||+|+|..+++|+      .+...++.++.++|+|||.++
T Consensus       164 ----------------~g~~~~v~~~~~D~~~-~~~~~~~FD~V~s~~~~~h~------~d~~~~l~e~~rvLkpGG~lv  220 (340)
T PLN02244        164 ----------------QGLSDKVSFQVADALN-QPFEDGQFDLVWSMESGEHM------PDKRKFVQELARVAAPGGRII  220 (340)
T ss_pred             ----------------cCCCCceEEEEcCccc-CCCCCCCccEEEECCchhcc------CCHHHHHHHHHHHcCCCcEEE
Confidence                            3444568999999876 56677899999999998655      356789999999999999999


Q ss_pred             EeeCCCchhhhh--------hhhhhhhhcccccc-ccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKN--------RRVSETTATNFQNI-KLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +...........        ......+...+... ....+++.+ +++++||..++...
T Consensus       221 i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~-~l~~aGf~~v~~~d  278 (340)
T PLN02244        221 IVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVK-LAESLGLQDIKTED  278 (340)
T ss_pred             EEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHH-HHHHCCCCeeEeee
Confidence            964322111100        00011111111111 124556666 89999999887654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.66  E-value=6.8e-15  Score=136.72  Aligned_cols=194  Identities=28%  Similarity=0.387  Sum_probs=131.3

Q ss_pred             hhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhc--c-CCCcEEEecCCCChhhHHH
Q 047406           14 EKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEW--F-EGKDCLDIGCNSGIITIQI   80 (290)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~--~-~~~~vLDiGcG~G~~~~~l   80 (290)
                      ++-.....++.++. .+|+.| ...||+..|.  +...   ||      ++.+...+  . ++.+|||+|||+|.+++.+
T Consensus        56 ~~~~~~~~~r~~~~pl~yi~g-~~~f~g~~f~--v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~l  132 (284)
T TIGR00536        56 ERIFRLVLRRVKGVPVAYLLG-SKEFYGLEFF--VNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALAL  132 (284)
T ss_pred             HHHHHHHHHHHcCCCHHHHhC-cceEcCeEEE--ECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHH
Confidence            34445455555555 899999 6889887663  2222   33      22222222  1 2268999999999999999


Q ss_pred             HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406           81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF  160 (290)
Q Consensus        81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (290)
                      +..++..+|+|+|+|+.+++.|+.++..                                                .++.
T Consensus       133 a~~~~~~~v~avDis~~al~~a~~n~~~------------------------------------------------~~~~  164 (284)
T TIGR00536       133 AYEFPNAEVIAVDISPDALAVAEENAEK------------------------------------------------NQLE  164 (284)
T ss_pred             HHHCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCCC
Confidence            9988878999999999999999998765                                                3333


Q ss_pred             cceeEeecccccCCCCCCCceeEEEEch-------------hhh---hhhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406          161 DIVSFKQENFVHGRDSPEKYYDAILCLS-------------VTK---WIHLNWGDDG---LITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~-------------vl~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i  221 (290)
                      .++.+.+.|+.+..  +..+||+|+|+.             +.+   +..+..+.++   ...++.++.+.|+|||++++
T Consensus       165 ~~v~~~~~d~~~~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       165 HRVEFIQSNLFEPL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             CcEEEEECchhccC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            45889999987632  334799999951             121   1233334443   46899999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHH-HcCCeeeEeccCCCCCCCCCCCCcceeeec
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFR  289 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~  289 (290)
                      +.+.+..                      +...+ ++. +.||..++++.+      ..|..|.+...+
T Consensus       243 e~g~~q~----------------------~~~~~-~~~~~~~~~~~~~~~D------~~g~~R~~~~~~  282 (284)
T TIGR00536       243 EIGNWQQ----------------------KSLKE-LLRIKFTWYDVENGRD------LNGKERVVLGFY  282 (284)
T ss_pred             EECccHH----------------------HHHHH-HHHhcCCCceeEEecC------CCCCceEEEEEe
Confidence            8773321                      22333 455 578987777665      455666665543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.66  E-value=3.6e-15  Score=137.29  Aligned_cols=152  Identities=20%  Similarity=0.287  Sum_probs=107.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+.....                               
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-------------------------------   97 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-------------------------------   97 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------------------------------
Confidence            3678999999999999999988765 45899999999999999875321                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                          ...+.+...|+.+ .+.++++||+|++..++.|+    +.++...+++++.++|+|||.+
T Consensus        98 --------------------~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~----~~~d~~~~l~~i~r~LkPGG~l  152 (263)
T PTZ00098         98 --------------------KNKIEFEANDILK-KDFPENTFDMIYSRDAILHL----SYADKKKLFEKCYKWLKPNGIL  152 (263)
T ss_pred             --------------------CCceEEEECCccc-CCCCCCCeEEEEEhhhHHhC----CHHHHHHHHHHHHHHcCCCcEE
Confidence                                2358888889875 45667899999998887433    2347889999999999999999


Q ss_pred             EEeeCCCchhhhh-hhhhhhhhc-cccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKN-RRVSETTAT-NFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++........... ......... .+.  ...+.++.+ +++.+||+.++....
T Consensus       153 vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~l~~aGF~~v~~~d~  203 (263)
T PTZ00098        153 LITDYCADKIENWDEEFKAYIKKRKYT--LIPIQEYGD-LIKSCNFQNVVAKDI  203 (263)
T ss_pred             EEEEeccccccCcHHHHHHHHHhcCCC--CCCHHHHHH-HHHHCCCCeeeEEeC
Confidence            9975422111000 011111111 111  134455655 899999999887653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.65  E-value=5.7e-15  Score=147.65  Aligned_cols=182  Identities=20%  Similarity=0.251  Sum_probs=127.1

Q ss_pred             hhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhc-----------------------
Q 047406           14 EKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEW-----------------------   60 (290)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~-----------------------   60 (290)
                      ++-.....|+.++. .+|+.| +.+||+..|  .++..   ||      .+.+....                       
T Consensus        57 ~~~~~~~~rr~~~ePlqYI~G-~~~F~g~~f--~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (506)
T PRK01544         57 EAFEKLLERRLKHEPIAYITG-VKEFYSREF--IVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISS  133 (506)
T ss_pred             HHHHHHHHHHHcCCCHHHHhC-cCEEcCcEE--EeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence            34444455555555 999999 899999888  55555   44      22221111                       


Q ss_pred             ---cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           61 ---FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        61 ---~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                         .++.+|||+|||+|.+++.++..++..+|+++|+|+.+++.|+.++..                             
T Consensus       134 ~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~-----------------------------  184 (506)
T PRK01544        134 NCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK-----------------------------  184 (506)
T ss_pred             cccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH-----------------------------
Confidence               134689999999999999999888888999999999999999998765                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch--------------hhh---hhhhcCCch
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS--------------VTK---WIHLNWGDD  200 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~--------------vl~---~~~l~~~~~  200 (290)
                                         .++...+.+.+.|+.+..  +.++||+|+|+.              +..   ...++.+.+
T Consensus       185 -------------------~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d  243 (506)
T PRK01544        185 -------------------YEVTDRIQIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED  243 (506)
T ss_pred             -------------------cCCccceeeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc
Confidence                               334446888888876532  346899999942              111   123444555


Q ss_pred             HH---HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          201 GL---ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       201 ~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++   ..++.++.++|+|||.++++.+                       ....+....++.+.||..++++.+
T Consensus       244 Gl~~~~~il~~a~~~L~~gG~l~lEig-----------------------~~q~~~v~~~~~~~g~~~~~~~~D  294 (506)
T PRK01544        244 GLQAYFIIAENAKQFLKPNGKIILEIG-----------------------FKQEEAVTQIFLDHGYNIESVYKD  294 (506)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEEC-----------------------CchHHHHHHHHHhcCCCceEEEec
Confidence            54   5688999999999999999765                       111223344677889987766554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.65  E-value=3.1e-15  Score=147.72  Aligned_cols=175  Identities=20%  Similarity=0.284  Sum_probs=118.1

Q ss_pred             ccccccccccccccCCCCCch-hhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           31 PFGNYKNYYGYRIGQGLNEDP-RFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      +.| +..||+..+  .+...- ..+.+...  +.++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+.+..
T Consensus       235 i~~-~~~f~g~~~--~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~  310 (475)
T PLN02336        235 ILR-YERVFGEGF--VSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI  310 (475)
T ss_pred             HHH-HHHHhCCCC--CCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh
Confidence            667 788887655  333321 11112111  3567899999999999999998876 4589999999999999987543


Q ss_pred             HHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc
Q 047406          108 KIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL  187 (290)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~  187 (290)
                      .                                                  ....+.|...|+.+ .+.++++||+|+|.
T Consensus       311 ~--------------------------------------------------~~~~v~~~~~d~~~-~~~~~~~fD~I~s~  339 (475)
T PLN02336        311 G--------------------------------------------------RKCSVEFEVADCTK-KTYPDNSFDVIYSR  339 (475)
T ss_pred             c--------------------------------------------------CCCceEEEEcCccc-CCCCCCCEEEEEEC
Confidence            2                                                  22358899999876 35566789999999


Q ss_pred             hhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhcccccccc-CchhHHHHHHHHcCCeee
Q 047406          188 SVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL-YPKEFQEILLDKIGFRTV  266 (290)
Q Consensus       188 ~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~Gf~~v  266 (290)
                      .+++|+      .+...++.+++++|+|||.+++.....................  ...+ ...++.+ +++++||+++
T Consensus       340 ~~l~h~------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~-~l~~aGF~~i  410 (475)
T PLN02336        340 DTILHI------QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR--GYDLHDVQAYGQ-MLKDAGFDDV  410 (475)
T ss_pred             Cccccc------CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc--CCCCCCHHHHHH-HHHHCCCeee
Confidence            998665      3578999999999999999999754221111111111111111  1122 3445544 8999999988


Q ss_pred             Eec
Q 047406          267 EDI  269 (290)
Q Consensus       267 ~~~  269 (290)
                      +..
T Consensus       411 ~~~  413 (475)
T PLN02336        411 IAE  413 (475)
T ss_pred             eee
Confidence            654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.64  E-value=1.4e-15  Score=126.75  Aligned_cols=143  Identities=23%  Similarity=0.404  Sum_probs=97.3

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.+...++.+|||+|||+|.++..++.. +. +++|+|+++.+++.      .                           
T Consensus        16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~------~---------------------------   60 (161)
T PF13489_consen   16 LLPRLKPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK------R---------------------------   60 (161)
T ss_dssp             HHTCTTTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH------T---------------------------
T ss_pred             HhcccCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh------h---------------------------
Confidence            3333467899999999999999998765 33 99999999998877      1                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                                ...+...+... ...+.++||+|+|..+++|+      ++...++.++.++|+|
T Consensus        61 --------------------------~~~~~~~~~~~-~~~~~~~fD~i~~~~~l~~~------~d~~~~l~~l~~~Lkp  107 (161)
T PF13489_consen   61 --------------------------NVVFDNFDAQD-PPFPDGSFDLIICNDVLEHL------PDPEEFLKELSRLLKP  107 (161)
T ss_dssp             --------------------------TSEEEEEECHT-HHCHSSSEEEEEEESSGGGS------SHHHHHHHHHHHCEEE
T ss_pred             --------------------------hhhhhhhhhhh-hhccccchhhHhhHHHHhhc------ccHHHHHHHHHHhcCC
Confidence                                      01111111111 22356899999999999887      3689999999999999


Q ss_pred             CcEEEEeeCCCchhhhhhhhhhhhhcc--ccccccCchhHHHHHHHHcCCeeeE
Q 047406          216 GGIFVLEPQPWVSYEKNRRVSETTATN--FQNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       216 gG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      ||++++..+.-..... .....+....  ..+..+.+.+....+++++||++++
T Consensus       108 gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  108 GGYLVISDPNRDDPSP-RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             EEEEEEEEEBTTSHHH-HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEEEEcCCcchhh-hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            9999997653211111 1111111111  1444555655555699999999986

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.64  E-value=4.1e-15  Score=140.90  Aligned_cols=152  Identities=19%  Similarity=0.279  Sum_probs=107.4

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|.++..+++.  ..+|+|+|+++.+++.|+.+...                                 
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~---------------------------------  175 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADM---------------------------------  175 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh---------------------------------
Confidence            5679999999999999988864  45899999999999999876443                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     ......+.+.+.|+.+ ++...+.||+|+|..+++|+      .+...++.++.++|+|||.+++
T Consensus       176 ---------------~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~~~vLeHv------~d~~~~L~~l~r~LkPGG~lii  233 (322)
T PLN02396        176 ---------------DPVTSTIEYLCTTAEK-LADEGRKFDAVLSLEVIEHV------ANPAEFCKSLSALTIPNGATVL  233 (322)
T ss_pred             ---------------cCcccceeEEecCHHH-hhhccCCCCEEEEhhHHHhc------CCHHHHHHHHHHHcCCCcEEEE
Confidence                           1222358888888755 45556789999999999776      3568999999999999999999


Q ss_pred             eeCCCc--hhhhh----hhhhhhhhcccc-cc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWV--SYEKN----RRVSETTATNFQ-NI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~--~~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ...+-.  ++...    ..+..+.....+ .. .+.++++.. +++++||+++++.+-
T Consensus       234 st~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~-lL~~aGf~i~~~~G~  290 (322)
T PLN02396        234 STINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSM-ILQRASVDVKEMAGF  290 (322)
T ss_pred             EECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHH-HHHHcCCeEEEEeee
Confidence            765422  11111    011111111111 11 244556655 899999999988543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=4.6e-15  Score=124.77  Aligned_cols=108  Identities=25%  Similarity=0.396  Sum_probs=90.7

Q ss_pred             cCCCcEEEecCCCChhhHHHH-hHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIA-QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la-~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+.+|||+|||+|.++..++ +..+..+++|+|+|+.+++.|+..+..                               
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-------------------------------   50 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-------------------------------   50 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-------------------------------
Confidence            357899999999999999999 445677999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       .++. ++.|.+.|+.+ ++  .+ ..||+|++..+++|+      .+...+++++.++|+++|
T Consensus        51 -----------------~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I~~~~~l~~~------~~~~~~l~~~~~~lk~~G  104 (152)
T PF13847_consen   51 -----------------LGLD-NIEFIQGDIED-LPQELE-EKFDIIISNGVLHHF------PDPEKVLKNIIRLLKPGG  104 (152)
T ss_dssp             -----------------TTST-TEEEEESBTTC-GCGCSS-TTEEEEEEESTGGGT------SHHHHHHHHHHHHEEEEE
T ss_pred             -----------------cccc-ccceEEeehhc-cccccC-CCeeEEEEcCchhhc------cCHHHHHHHHHHHcCCCc
Confidence                             3333 69999999988 44  33 789999999999766      467899999999999999


Q ss_pred             EEEEeeCC
Q 047406          218 IFVLEPQP  225 (290)
Q Consensus       218 ~l~i~~~~  225 (290)
                      ++++....
T Consensus       105 ~~i~~~~~  112 (152)
T PF13847_consen  105 ILIISDPN  112 (152)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEECC
Confidence            99997654

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.63  E-value=9.5e-15  Score=130.51  Aligned_cols=108  Identities=16%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|+.++..                               
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------------------------   92 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-------------------------------   92 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-------------------------------
Confidence            4678999999999999999988763 46999999999999999987653                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++ .++.+...|..+ .+.+.++||+|++..+++|+      ++...++.++.++|+|||.+
T Consensus        93 -----------------~~~-~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~------~~~~~~l~~~~~~Lk~gG~l  147 (231)
T TIGR02752        93 -----------------AGL-HNVELVHGNAME-LPFDDNSFDYVTIGFGLRNV------PDYMQVLREMYRVVKPGGKV  147 (231)
T ss_pred             -----------------cCC-CceEEEEechhc-CCCCCCCccEEEEecccccC------CCHHHHHHHHHHHcCcCeEE
Confidence                             222 358888888866 45566899999999888765      34678999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       148 ~~~~~  152 (231)
T TIGR02752       148 VCLET  152 (231)
T ss_pred             EEEEC
Confidence            98543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=2.7e-15  Score=113.97  Aligned_cols=95  Identities=29%  Similarity=0.548  Sum_probs=79.0

Q ss_pred             EEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHH
Q 047406           67 LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKK  146 (290)
Q Consensus        67 LDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (290)
                      ||+|||+|..+..+++. +..+++++|+|+.+++.+++....                                      
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--------------------------------------   41 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--------------------------------------   41 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--------------------------------------
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--------------------------------------
Confidence            89999999999999987 677999999999999999885432                                      


Q ss_pred             hhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          147 AISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       147 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                    ..+.+...|+.+ ++.++++||+|+|..+++|+      ++...+++++.++|||||+++|
T Consensus        42 --------------~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~~~------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   42 --------------EGVSFRQGDAED-LPFPDNSFDVVFSNSVLHHL------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             --------------STEEEEESBTTS-SSS-TT-EEEEEEESHGGGS------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --------------cCchheeehHHh-Cccccccccccccccceeec------cCHHHHHHHHHHHcCcCeEEeC
Confidence                          234588888876 58888999999999999876      5889999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=5.9e-15  Score=134.35  Aligned_cols=109  Identities=17%  Similarity=0.286  Sum_probs=88.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhH--cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQK--FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..++.+|||+|||+|..+..+++.  .+..+++|+|+|+.+++.|+.++..                             
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-----------------------------  104 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-----------------------------  104 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-----------------------------
Confidence            457889999999999999888874  4667999999999999999998764                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         .+...++.+.+.|+.+ .+.  ..+|+|+|..++|+++    .+....++.++++.|+|||
T Consensus       105 -------------------~~~~~~v~~~~~d~~~-~~~--~~~D~vv~~~~l~~l~----~~~~~~~l~~i~~~LkpGG  158 (247)
T PRK15451        105 -------------------YKAPTPVDVIEGDIRD-IAI--ENASMVVLNFTLQFLE----PSERQALLDKIYQGLNPGG  158 (247)
T ss_pred             -------------------cCCCCCeEEEeCChhh-CCC--CCCCEEehhhHHHhCC----HHHHHHHHHHHHHhcCCCC
Confidence                               2233468888988865 232  4599999999998764    3556899999999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      .|++..
T Consensus       159 ~l~l~e  164 (247)
T PRK15451        159 ALVLSE  164 (247)
T ss_pred             EEEEEE
Confidence            999964

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.62  E-value=7.9e-15  Score=133.72  Aligned_cols=99  Identities=20%  Similarity=0.335  Sum_probs=83.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+..                                   
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------------------------------   72 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------------------------------   72 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------------------------------
Confidence            467899999999999999999988777999999999999988541                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                           .+.+.+.|+.+ ++ +.++||+|+|..+++|+      ++...++.++.++|+|||.++
T Consensus        73 ---------------------~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~l~  123 (255)
T PRK14103         73 ---------------------GVDARTGDVRD-WK-PKPDTDVVVSNAALQWV------PEHADLLVRWVDELAPGSWIA  123 (255)
T ss_pred             ---------------------CCcEEEcChhh-CC-CCCCceEEEEehhhhhC------CCHHHHHHHHHHhCCCCcEEE
Confidence                                 25677788754 22 45789999999999887      356889999999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       124 ~~~  126 (255)
T PRK14103        124 VQV  126 (255)
T ss_pred             EEc
Confidence            964

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=8.2e-15  Score=138.81  Aligned_cols=153  Identities=17%  Similarity=0.229  Sum_probs=103.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|.++..++...+ ..|+|+|+|+.++..++.....                                
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~--------------------------------  167 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL--------------------------------  167 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh--------------------------------
Confidence            4678999999999999999888744 4799999999888665442211                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .....++.+...++.+ ++. .+.||+|+|..+++|.      .+...+++++++.|+|||.++
T Consensus       168 ----------------~~~~~~i~~~~~d~e~-lp~-~~~FD~V~s~~vl~H~------~dp~~~L~~l~~~LkpGG~lv  223 (322)
T PRK15068        168 ----------------LGNDQRAHLLPLGIEQ-LPA-LKAFDTVFSMGVLYHR------RSPLDHLKQLKDQLVPGGELV  223 (322)
T ss_pred             ----------------cCCCCCeEEEeCCHHH-CCC-cCCcCEEEECChhhcc------CCHHHHHHHHHHhcCCCcEEE
Confidence                            0112257888888765 444 6789999999999654      467889999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhcccccccc--CchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKL--YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....................+.++.+  ...++.. +++++||+.+++...
T Consensus       224 l~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~-~L~~aGF~~i~~~~~  275 (322)
T PRK15068        224 LETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKN-WLERAGFKDVRIVDV  275 (322)
T ss_pred             EEEEEecCCCccccCchhHHhcCccceeCCCHHHHHH-HHHHcCCceEEEEeC
Confidence            9643211111110011111111222222  3345555 899999999988765

>TIGR00740 methyltransferase, putative

Probab=99.62  E-value=1e-14  Score=131.58  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=89.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc--CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF--NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .++.+|||+|||+|..+..+++.+  +..+++|+|+|+.+++.|+.++..                              
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~------------------------------  101 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA------------------------------  101 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh------------------------------
Confidence            577899999999999999988864  567999999999999999987654                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .....++.+.+.|+.+. +.  ..+|+|+|..++||++    +++...++.++++.|+|||.
T Consensus       102 ------------------~~~~~~v~~~~~d~~~~-~~--~~~d~v~~~~~l~~~~----~~~~~~~l~~i~~~LkpgG~  156 (239)
T TIGR00740       102 ------------------YHSEIPVEILCNDIRHV-EI--KNASMVILNFTLQFLP----PEDRIALLTKIYEGLNPNGV  156 (239)
T ss_pred             ------------------cCCCCCeEEEECChhhC-CC--CCCCEEeeecchhhCC----HHHHHHHHHHHHHhcCCCeE
Confidence                              12223578889998663 32  4589999999998774    35678999999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++...
T Consensus       157 l~i~d~  162 (239)
T TIGR00740       157 LVLSEK  162 (239)
T ss_pred             EEEeec
Confidence            999754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.61  E-value=1.3e-14  Score=134.63  Aligned_cols=155  Identities=22%  Similarity=0.315  Sum_probs=105.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||||||.|.+++.+|++++ .+|+|+++|+++.+.+++.+..                               
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~-------------------------------  107 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIRE-------------------------------  107 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHC-------------------------------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHh-------------------------------
Confidence            57999999999999999999999985 4899999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+.+.+...|+.+.    +.+||.|+|..++.++    +.+....+++++.++|+|||.+
T Consensus       108 -----------------~gl~~~v~v~~~D~~~~----~~~fD~IvSi~~~Ehv----g~~~~~~~f~~~~~~LkpgG~~  162 (273)
T PF02353_consen  108 -----------------AGLEDRVEVRLQDYRDL----PGKFDRIVSIEMFEHV----GRKNYPAFFRKISRLLKPGGRL  162 (273)
T ss_dssp             -----------------STSSSTEEEEES-GGG-------S-SEEEEESEGGGT----CGGGHHHHHHHHHHHSETTEEE
T ss_pred             -----------------cCCCCceEEEEeecccc----CCCCCEEEEEechhhc----ChhHHHHHHHHHHHhcCCCcEE
Confidence                             56677899999998763    2399999999999655    3567899999999999999999


Q ss_pred             EEeeCCCchhhhh--hhh-hhhhhcc-ccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKN--RRV-SETTATN-FQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..-........  ... ..++..+ |+.-.+.+.......++++||++..+...
T Consensus       163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~  218 (273)
T PF02353_consen  163 VLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL  218 (273)
T ss_dssp             EEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred             EEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence            9854322111111  111 1344443 56555544443343788999998876543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.60  E-value=4.1e-15  Score=134.37  Aligned_cols=151  Identities=21%  Similarity=0.347  Sum_probs=105.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||+|||-|.++..+|+.  +.+|+|+|+++.+++.|+.+...                                
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e--------------------------------  103 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE--------------------------------  103 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh--------------------------------
Confidence            48999999999999999999987  46999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++  .+++.+....+ +....++||+|+|..|++|+      ++...++..|.+++||||+++
T Consensus       104 ----------------~gv--~i~y~~~~~ed-l~~~~~~FDvV~cmEVlEHv------~dp~~~~~~c~~lvkP~G~lf  158 (243)
T COG2227         104 ----------------SGV--NIDYRQATVED-LASAGGQFDVVTCMEVLEHV------PDPESFLRACAKLVKPGGILF  158 (243)
T ss_pred             ----------------ccc--cccchhhhHHH-HHhcCCCccEEEEhhHHHcc------CCHHHHHHHHHHHcCCCcEEE
Confidence                            222  14444444433 23334899999999999765      577889999999999999999


Q ss_pred             EeeCCC--chhhhhhhhhhhhhc-----ccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPW--VSYEKNRRVSETTAT-----NFQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~--~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..+.  .++....-..+....     ..+.- .+.+++..+ .+..+|+.+....+-
T Consensus       159 ~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~-~~~~~~~~~~~~~g~  216 (243)
T COG2227         159 LSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIR-WLLGANLKIIDRKGL  216 (243)
T ss_pred             EeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHH-hcccCCceEEeecce
Confidence            987652  222222111111111     11111 245566665 566688887766554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.60  E-value=2.3e-14  Score=133.00  Aligned_cols=153  Identities=21%  Similarity=0.332  Sum_probs=117.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|++|||||||.|..++.+|+++ +.+|+|+++|+++.+.+++.+..                               
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~-------------------------------  117 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA-------------------------------  117 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH-------------------------------
Confidence            4799999999999999999999998 46999999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+++++...|+.+    ..++||.|++..+++|+.    .+.....|+++.++|+|||.+
T Consensus       118 -----------------~gl~~~v~v~l~d~rd----~~e~fDrIvSvgmfEhvg----~~~~~~ff~~~~~~L~~~G~~  172 (283)
T COG2230         118 -----------------RGLEDNVEVRLQDYRD----FEEPFDRIVSVGMFEHVG----KENYDDFFKKVYALLKPGGRM  172 (283)
T ss_pred             -----------------cCCCcccEEEeccccc----cccccceeeehhhHHHhC----cccHHHHHHHHHhhcCCCceE
Confidence                             5556678899888866    345599999999998773    577899999999999999999


Q ss_pred             EEeeCCCchhhhhh-hhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNR-RVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..-.-.  .... ....++. .-|++-.+.+.........++||.+.....-
T Consensus       173 llh~I~~~--~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~  224 (283)
T COG2230         173 LLHSITGP--DQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESL  224 (283)
T ss_pred             EEEEecCC--CcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence            99542211  1111 3333333 3466655555555554688999998766543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.60  E-value=2.9e-14  Score=126.85  Aligned_cols=145  Identities=21%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ++|||||||+|..+..+++.++..+++|+|+|+.+++.++.++..                                   
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~-----------------------------------   45 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA-----------------------------------   45 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence            479999999999999999988767999999999999999987654                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                                   .++...+.+...|+... +. .++||+|++..+++++      .+...++.++.++|+|||.+++..
T Consensus        46 -------------~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       46 -------------LGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIHHI------KDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             -------------cCCCcceEEEecccccC-CC-CCCCCEeehHHHHHhC------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence                         34555788888888553 33 3589999999999765      346899999999999999999964


Q ss_pred             CCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          224 QPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ..-.....   ..   ............++.+ ++.++||++++....
T Consensus       105 ~~~~~~~~---~~---~~~~~~~~~s~~~~~~-~l~~~Gf~~~~~~~~  145 (224)
T smart00828      105 FIANLLSA---IE---HEETTSYLVTREEWAE-LLARNNLRVVEGVDA  145 (224)
T ss_pred             cccccCcc---cc---ccccccccCCHHHHHH-HHHHCCCeEEEeEEC
Confidence            31100000   00   0001111234455655 789999999887654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.2e-13  Score=128.49  Aligned_cols=182  Identities=24%  Similarity=0.353  Sum_probs=124.7

Q ss_pred             HhhhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhccCCC-cEEEecCCCChhhHHH
Q 047406           12 EEEKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEWFEGK-DCLDIGCNSGIITIQI   80 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~~~~~-~vLDiGcG~G~~~~~l   80 (290)
                      +.++-.....+..++. .+|+.| ..+|++..+  .+.+.   ||      ++.+........ +|||+|||||.+++.+
T Consensus        52 ~~~~~~~~~~rr~~~~P~~yi~g-~~~f~gl~~--~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~l  128 (280)
T COG2890          52 ELERLRELLERRAEGEPVAYILG-SAEFGGLRF--KVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIAL  128 (280)
T ss_pred             HHHHHHHHHHHHHCCCCHhHhhc-cCeecceee--eeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHH
Confidence            3344444444444454 899999 689999888  55554   44      222211222222 7999999999999999


Q ss_pred             HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406           81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF  160 (290)
Q Consensus        81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (290)
                      +...+..+|+|+|+|+++++.|+.|+..                                                .++ 
T Consensus       129 a~~~~~~~V~a~Dis~~Al~~A~~Na~~------------------------------------------------~~l-  159 (280)
T COG2890         129 AKEGPDAEVIAVDISPDALALARENAER------------------------------------------------NGL-  159 (280)
T ss_pred             HhhCcCCeEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC-
Confidence            9998888999999999999999999887                                                444 


Q ss_pred             cceeEeecccccCCCCCCCceeEEEEchhh-------------h---hhhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406          161 DIVSFKQENFVHGRDSPEKYYDAILCLSVT-------------K---WIHLNWGDDG---LITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl-------------~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i  221 (290)
                      .++.+.+.|+...   ..++||+|+|+.--             .   +..+..+.++   ..+++.++.+.|+|||.+++
T Consensus       160 ~~~~~~~~dlf~~---~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         160 VRVLVVQSDLFEP---LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             ccEEEEeeecccc---cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence            3455666687663   23489999995210             0   0112223333   36899999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcC-CeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG-FRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G-f~~v~~~~~  271 (290)
                      +.+                       +...+....++.+.| |..++...+
T Consensus       237 e~g-----------------------~~q~~~v~~~~~~~~~~~~v~~~~d  264 (280)
T COG2890         237 EIG-----------------------LTQGEAVKALFEDTGFFEIVETLKD  264 (280)
T ss_pred             EEC-----------------------CCcHHHHHHHHHhcCCceEEEEEec
Confidence            876                       333444455888899 676666655

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.57  E-value=1.2e-13  Score=121.54  Aligned_cols=146  Identities=22%  Similarity=0.186  Sum_probs=106.9

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..++++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++..                             
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-----------------------------   91 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-----------------------------   91 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------
Confidence            344568999999999999999999888888999999999999999998776                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         .++. ++.+...|..+. +. .++||+|+|...          .....+++.++++|+|||
T Consensus        92 -------------------~~l~-~i~~~~~d~~~~-~~-~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG  139 (187)
T PRK00107         92 -------------------LGLK-NVTVVHGRAEEF-GQ-EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGG  139 (187)
T ss_pred             -------------------cCCC-CEEEEeccHhhC-CC-CCCccEEEEccc----------cCHHHHHHHHHHhcCCCe
Confidence                               3343 388999998763 33 578999999643          245788999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                      ++++..+.+.                      ...+.+ +.+..|+.+.+.+.- ..+.  -.-.|.+.+.||
T Consensus       140 ~lv~~~~~~~----------------------~~~l~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~  186 (187)
T PRK00107        140 RFLALKGRDP----------------------EEEIAE-LPKALGGKVEEVIEL-TLPG--LDGERHLVIIRK  186 (187)
T ss_pred             EEEEEeCCCh----------------------HHHHHH-HHHhcCceEeeeEEE-ecCC--CCCcEEEEEEec
Confidence            9999765321                      122333 566679987777654 1111  222345555554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.56  E-value=8.4e-14  Score=127.86  Aligned_cols=154  Identities=18%  Similarity=0.271  Sum_probs=106.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|..+..+++..+. .+|+++|+++.+++.|+++...                              
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------------------------  124 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------------------------  124 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------------------------
Confidence            468899999999999988877776543 4799999999999999987654                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ .++.+...|+.+ ++.+++.||+|++..+++|.      .+...++++++++|+|||.
T Consensus       125 ------------------~g~-~~v~~~~~d~~~-l~~~~~~fD~Vi~~~v~~~~------~d~~~~l~~~~r~LkpGG~  178 (272)
T PRK11873        125 ------------------AGY-TNVEFRLGEIEA-LPVADNSVDVIISNCVINLS------PDKERVFKEAFRVLKPGGR  178 (272)
T ss_pred             ------------------cCC-CCEEEEEcchhh-CCCCCCceeEEEEcCcccCC------CCHHHHHHHHHHHcCCCcE
Confidence                              222 257788888765 45566799999999888644      3567899999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhh--hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSET--TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++.......... ......  +......-.+...++.+ +++.+||..+++...
T Consensus       179 l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~aGf~~v~i~~~  231 (272)
T PRK11873        179 FAISDVVLRGELP-EEIRNDAELYAGCVAGALQEEEYLA-MLAEAGFVDITIQPK  231 (272)
T ss_pred             EEEEEeeccCCCC-HHHHHhHHHHhccccCCCCHHHHHH-HHHHCCCCceEEEec
Confidence            9996432211000 000000  00011111234556665 789999998877543

>TIGR00452 methyltransferase, putative

Probab=99.56  E-value=6e-14  Score=132.54  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++... ...|+|+|+|+.++..++..-..                                
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~--------------------------------  166 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKL--------------------------------  166 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHH--------------------------------
Confidence            568999999999999988887764 34799999999998765432111                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      ......+.+...++.+ ++. ...||+|+|..+++|.      .+...++.+++++|+|||.|+
T Consensus       167 ----------------~~~~~~v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~------~dp~~~L~el~r~LkpGG~Lv  222 (314)
T TIGR00452       167 ----------------LDNDKRAILEPLGIEQ-LHE-LYAFDTVFSMGVLYHR------KSPLEHLKQLKHQLVIKGELV  222 (314)
T ss_pred             ----------------hccCCCeEEEECCHHH-CCC-CCCcCEEEEcchhhcc------CCHHHHHHHHHHhcCCCCEEE
Confidence                            0001235566666544 333 3579999999999765      466889999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....................+.++. +.+......+++++||+.+++...
T Consensus       223 letl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       223 LETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV  274 (314)
T ss_pred             EEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence            964322111110000000111112222 223333444899999999988765

Known examples to date are restricted to the proteobacteria.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.56  E-value=1.4e-13  Score=131.25  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++...                                
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------------------------------  159 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------------------  159 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------------------------------
Confidence            357899999999999999988877767999999999999998875321                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|..+ .+.+++.||+|++..+++++      .+...+++++.++|+|||.++
T Consensus       160 --------------------~~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~------~d~~~~L~e~~rvLkPGG~Lv  212 (340)
T PLN02490        160 --------------------KECKIIEGDAED-LPFPTDYADRYVSAGSIEYW------PDPQRGIKEAYRVLKIGGKAC  212 (340)
T ss_pred             --------------------cCCeEEeccHHh-CCCCCCceeEEEEcChhhhC------CCHHHHHHHHHHhcCCCcEEE
Confidence                                136678888765 45566889999999988654      345689999999999999998


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +...........+.    ....+.. ....+++.+ +++++||+.+++...
T Consensus       213 Ii~~~~p~~~~~r~----~~~~~~~-~~t~eEl~~-lL~~aGF~~V~i~~i  257 (340)
T PLN02490        213 LIGPVHPTFWLSRF----FADVWML-FPKEEEYIE-WFTKAGFKDVKLKRI  257 (340)
T ss_pred             EEEecCcchhHHHH----hhhhhcc-CCCHHHHHH-HHHHCCCeEEEEEEc
Confidence            85432111111000    0011111 123455555 899999999887654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.56  E-value=7.5e-15  Score=135.40  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=90.6

Q ss_pred             CCCcEEEecCCCCh----hhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           62 EGKDCLDIGCNSGI----ITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        62 ~~~~vLDiGcG~G~----~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+|||+|||+|.    +++.+++.++     ..+|+|+|+|+.+++.|++.++..-.....+...-   .-+|.. ..
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~---~~yf~~-~~  174 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL---ARYFSR-VE  174 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH---hhhEEe-CC
Confidence            45799999999996    4555555544     35899999999999999987543110000000000   001111 11


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                      +..+.                  ...+...+.|.+.|+.+. +.+.++||+|+|.++++|+    +.+...+++.++.++
T Consensus       175 ~~~~v------------------~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf----~~~~~~~~l~~l~~~  231 (264)
T smart00138      175 DKYRV------------------KPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF----DEPTQRKLLNRFAEA  231 (264)
T ss_pred             CeEEE------------------ChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC----CHHHHHHHHHHHHHH
Confidence            11110                  122445799999999873 4456899999999999765    346778999999999


Q ss_pred             cCCCcEEEEeeC
Q 047406          213 LRPGGIFVLEPQ  224 (290)
Q Consensus       213 LkpgG~l~i~~~  224 (290)
                      |+|||+|++.+.
T Consensus       232 L~pGG~L~lg~~  243 (264)
T smart00138      232 LKPGGYLFLGHS  243 (264)
T ss_pred             hCCCeEEEEECc
Confidence            999999999643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.56  E-value=2.6e-13  Score=126.42  Aligned_cols=158  Identities=22%  Similarity=0.238  Sum_probs=110.3

Q ss_pred             hhhHHHHHhhh-cC-CCccccccccccccccccCCCCCc---hh------hHHhhh-hc--cCCCcEEEecCCCChhhHH
Q 047406           14 EKGEAQQLKKR-KG-KDVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKK-EW--FEGKDCLDIGCNSGIITIQ   79 (290)
Q Consensus        14 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~-~~--~~~~~vLDiGcG~G~~~~~   79 (290)
                      ++-.....|+. ++ ..+|+.| +.+|++..|  .+...   ||      +..... .+  .++.+|||+|||+|.+++.
T Consensus        62 ~~~~~~~~rr~~~~~Pl~yi~g-~~~f~g~~f--~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~  138 (284)
T TIGR03533        62 ERILELIERRIEERIPVAYLTN-EAWFAGLEF--YVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIA  138 (284)
T ss_pred             HHHHHHHHHHHhCCCcHHHHcC-CCeecCcEE--EECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHH
Confidence            34444455554 45 5999999 789988666  22222   22      222222 12  2357899999999999999


Q ss_pred             HHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCc
Q 047406           80 IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNL  159 (290)
Q Consensus        80 la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (290)
                      ++...+..+|+|+|+|+.+++.|+.++..                                                .++
T Consensus       139 la~~~~~~~v~avDis~~al~~A~~n~~~------------------------------------------------~~~  170 (284)
T TIGR03533       139 CAYAFPEAEVDAVDISPDALAVAEINIER------------------------------------------------HGL  170 (284)
T ss_pred             HHHHCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC
Confidence            99988878999999999999999998875                                                344


Q ss_pred             CcceeEeecccccCCCCCCCceeEEEEchh---------h----h---hhhhcCCchH---HHHHHHHHHhhcCCCcEEE
Q 047406          160 FDIVSFKQENFVHGRDSPEKYYDAILCLSV---------T----K---WIHLNWGDDG---LITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       160 ~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v---------l----~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~  220 (290)
                      ..++.+...|+.+..  +..+||+|+|+.-         +    +   ...+..+.++   ...++.++.++|+|||.++
T Consensus       171 ~~~i~~~~~D~~~~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~  248 (284)
T TIGR03533       171 EDRVTLIQSDLFAAL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV  248 (284)
T ss_pred             CCcEEEEECchhhcc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence            456889999986533  3457999999621         0    0   0112222222   3688999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      ++.+
T Consensus       249 ~e~g  252 (284)
T TIGR03533       249 VEVG  252 (284)
T ss_pred             EEEC
Confidence            9875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.55  E-value=9.7e-14  Score=125.89  Aligned_cols=100  Identities=16%  Similarity=0.314  Sum_probs=81.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..++..  ..+++++|+|+.+++.|+.+..                                  
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~----------------------------------   85 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA----------------------------------   85 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----------------------------------
Confidence            4679999999999999888764  4589999999999998876421                                  


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                          .+.+...|+.+ ++.++++||+|+|+.+++|+      .++..++.++.++|+|||.+++
T Consensus        86 --------------------~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~------~d~~~~l~~~~~~Lk~gG~l~~  138 (251)
T PRK10258         86 --------------------ADHYLAGDIES-LPLATATFDLAWSNLAVQWC------GNLSTALRELYRVVRPGGVVAF  138 (251)
T ss_pred             --------------------CCCEEEcCccc-CcCCCCcEEEEEECchhhhc------CCHHHHHHHHHHHcCCCeEEEE
Confidence                                13466777755 45667789999999999887      4678999999999999999999


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      ...
T Consensus       139 ~~~  141 (251)
T PRK10258        139 TTL  141 (251)
T ss_pred             EeC
Confidence            754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=4.1e-13  Score=122.82  Aligned_cols=182  Identities=22%  Similarity=0.263  Sum_probs=119.2

Q ss_pred             hhHHHHHhhhcCC-CccccccccccccccccCCCCC-chh------hHHhhh--hccCCCcEEEecCCCChhhHHHHhHc
Q 047406           15 KGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNE-DPR------FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKF   84 (290)
Q Consensus        15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~------l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~   84 (290)
                      +-.....+..++. .+|+.| ...||+..|...... .|+      .+.+..  ...++.+|||+|||+|.++..++...
T Consensus        52 ~~~~~~~~~~~~~p~~~i~g-~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~  130 (275)
T PRK09328         52 RFRALVARRAAGEPLQYILG-EAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER  130 (275)
T ss_pred             HHHHHHHHHHcCCCHHHHce-eceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC
Confidence            3344444444553 778888 678888666322110 122      222221  12466899999999999999999988


Q ss_pred             CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCccee
Q 047406           85 NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVS  164 (290)
Q Consensus        85 ~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  164 (290)
                      +..+++++|+|+.+++.|+.++..                                                 ....++.
T Consensus       131 ~~~~v~~iDis~~~l~~a~~n~~~-------------------------------------------------~~~~~i~  161 (275)
T PRK09328        131 PDAEVTAVDISPEALAVARRNAKH-------------------------------------------------GLGARVE  161 (275)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHh-------------------------------------------------CCCCcEE
Confidence            778999999999999999997651                                                 1123588


Q ss_pred             EeecccccCCCCCCCceeEEEEchhhh-----------------hhhhcCCc---hHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          165 FKQENFVHGRDSPEKYYDAILCLSVTK-----------------WIHLNWGD---DGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       165 ~~~~d~~~~~~~~~~~fD~I~~~~vl~-----------------~~~l~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      +...|+.+..  +.++||+|+|+.-..                 +..+..+.   +....++.++.++|+|||.++++.+
T Consensus       162 ~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        162 FLQGDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             EEEccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            8888886532  247899999952110                 01111112   2346888999999999999999764


Q ss_pred             CCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          225 PWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .+.                      .+.+ ..++.+.||..++.+.+
T Consensus       240 ~~~----------------------~~~~-~~~l~~~gf~~v~~~~d  263 (275)
T PRK09328        240 YDQ----------------------GEAV-RALLAAAGFADVETRKD  263 (275)
T ss_pred             chH----------------------HHHH-HHHHHhCCCceeEEecC
Confidence            211                      1223 33778899997777654

>PRK08317 hypothetical protein; Provisional

Probab=99.54  E-value=9.3e-14  Score=122.75  Aligned_cols=149  Identities=21%  Similarity=0.319  Sum_probs=104.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.++.+...                               
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------------------------------   66 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------------------------------   66 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------------------------------
Confidence            567899999999999999999887 456899999999999998875211                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                         ...++.+...|+.+ .+.+.+.||+|++..+++++      .+...++.++.++|+|||.+
T Consensus        67 -------------------~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l  120 (241)
T PRK08317         67 -------------------LGPNVEFVRGDADG-LPFPDGSFDAVRSDRVLQHL------EDPARALAEIARVLRPGGRV  120 (241)
T ss_pred             -------------------CCCceEEEeccccc-CCCCCCCceEEEEechhhcc------CCHHHHHHHHHHHhcCCcEE
Confidence                               12357788888755 34556789999999998765      35788999999999999999


Q ss_pred             EEeeCCCchhhhh-------hhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          220 VLEPQPWVSYEKN-------RRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       220 ~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      ++....|......       ............. ......+.. +++++||+.++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~aGf~~~~~  174 (241)
T PRK08317        121 VVLDTDWDTLVWHSGDRALMRKILNFWSDHFAD-PWLGRRLPG-LFREAGLTDIEV  174 (241)
T ss_pred             EEEecCCCceeecCCChHHHHHHHHHHHhcCCC-CcHHHHHHH-HHHHcCCCceeE
Confidence            9977654321100       0111111111111 122344444 899999987655

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.54  E-value=2.9e-13  Score=118.23  Aligned_cols=103  Identities=21%  Similarity=0.215  Sum_probs=83.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.++...+..+|+++|+|+.+++.++.++..                                
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--------------------------------   88 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--------------------------------   88 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------------------------------
Confidence            358999999999999999998877777899999999999999887765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++. ++.+.+.|+.+ .. ..++||+|+|.. +         ..+..++..+.++|+|||.++
T Consensus        89 ----------------~~~~-~i~~i~~d~~~-~~-~~~~fD~I~s~~-~---------~~~~~~~~~~~~~LkpgG~lv  139 (181)
T TIGR00138        89 ----------------LGLN-NVEIVNGRAED-FQ-HEEQFDVITSRA-L---------ASLNVLLELTLNLLKVGGYFL  139 (181)
T ss_pred             ----------------hCCC-CeEEEecchhh-cc-ccCCccEEEehh-h---------hCHHHHHHHHHHhcCCCCEEE
Confidence                            2332 48899999866 22 357899999865 3         234567888999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +..+
T Consensus       140 i~~~  143 (181)
T TIGR00138       140 AYKG  143 (181)
T ss_pred             EEcC
Confidence            9754

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=3.4e-13  Score=127.04  Aligned_cols=159  Identities=20%  Similarity=0.267  Sum_probs=110.0

Q ss_pred             hhhHHHHHhhh-cCC-Ccccccccccccccccc--CCCCCchh------hHHhhhhc-cC--CCcEEEecCCCChhhHHH
Q 047406           14 EKGEAQQLKKR-KGK-DVFPFGNYKNYYGYRIG--QGLNEDPR------FKVLKKEW-FE--GKDCLDIGCNSGIITIQI   80 (290)
Q Consensus        14 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~------l~~l~~~~-~~--~~~vLDiGcG~G~~~~~l   80 (290)
                      ++-.....++. ++. .+|+.| +.+||+..|.  ..+.. ||      +......+ ..  ..+|||+|||+|.+++.+
T Consensus        74 ~~~~~~~~rr~~~~~Pl~yi~g-~~~F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~l  151 (307)
T PRK11805         74 ARILELIERRINERIPAAYLTN-EAWFCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIAC  151 (307)
T ss_pred             HHHHHHHHHHHHCCccHHHHcC-cceEcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHH
Confidence            34444455553 344 999999 7889886652  12211 22      22222212 22  268999999999999999


Q ss_pred             HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406           81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF  160 (290)
Q Consensus        81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (290)
                      +..++..+|+++|+|+.+++.|+.++..                                                .++.
T Consensus       152 a~~~p~~~V~avDis~~al~~A~~n~~~------------------------------------------------~~l~  183 (307)
T PRK11805        152 AYAFPDAEVDAVDISPDALAVAEINIER------------------------------------------------HGLE  183 (307)
T ss_pred             HHHCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------------------------hCCC
Confidence            9988888999999999999999999876                                                3344


Q ss_pred             cceeEeecccccCCCCCCCceeEEEEchh---------h----hh---hhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406          161 DIVSFKQENFVHGRDSPEKYYDAILCLSV---------T----KW---IHLNWGDDG---LITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~v---------l----~~---~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i  221 (290)
                      .++.+...|+.+..  +.++||+|+|+.-         +    +|   ..+..+.++   ...++.++.+.|+|||.+++
T Consensus       184 ~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        184 DRVTLIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             CcEEEEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            46889999986643  3457999999621         0    00   112223333   36889999999999999999


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      +.+
T Consensus       262 E~g  264 (307)
T PRK11805        262 EVG  264 (307)
T ss_pred             EEC
Confidence            876

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.53  E-value=4.8e-14  Score=128.66  Aligned_cols=153  Identities=19%  Similarity=0.313  Sum_probs=106.8

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      |++|||+|||.|.++.-||+.  +.+|+|+|+++++++.|+.+...                        .++.      
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~------------------------dP~~------  137 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKM------------------------DPVL------  137 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhc------------------------Cchh------
Confidence            588999999999999999987  56999999999999999998332                        0010      


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                   ...+.-++++.+.+...    ..+.||.|+|+.+++|+      +++..++..++++|+|+|.+++.
T Consensus       138 -------------~~~~~y~l~~~~~~~E~----~~~~fDaVvcsevleHV------~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  138 -------------EGAIAYRLEYEDTDVEG----LTGKFDAVVCSEVLEHV------KDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             -------------ccccceeeehhhcchhh----cccccceeeeHHHHHHH------hCHHHHHHHHHHHhCCCCceEee
Confidence                         01112235566666544    24569999999999766      68899999999999999999997


Q ss_pred             eCC--Cchhhhhhhhhhhhhcc-----cccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQP--WVSYEKNRRVSETTATN-----FQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~--~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .-+  +.++...-...+....-     ++-- .+.|++... +++.+++++..+.+.
T Consensus       195 tinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~-~l~~~~~~v~~v~G~  250 (282)
T KOG1270|consen  195 TINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTS-ILNANGAQVNDVVGE  250 (282)
T ss_pred             ehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHH-HHHhcCcchhhhhcc
Confidence            643  23333333333333321     1111 244555555 788899998877665

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.53  E-value=8.1e-14  Score=123.48  Aligned_cols=107  Identities=22%  Similarity=0.390  Sum_probs=87.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+|||+|||+|.++..+++.++..+++++|+|+.+++.++....                                  
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------------------------   79 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------------------------   79 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------------------------
Confidence            4578999999999999999998877789999999999988876321                                  


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                         .++.+...|+.+ .+.++++||+|+|..+++|+      .+...++.++.++|+|||.+++
T Consensus        80 -------------------~~~~~~~~d~~~-~~~~~~~fD~vi~~~~l~~~------~~~~~~l~~~~~~L~~~G~l~~  133 (240)
T TIGR02072        80 -------------------ENVQFICGDAEK-LPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKPGGLLAF  133 (240)
T ss_pred             -------------------CCCeEEecchhh-CCCCCCceeEEEEhhhhhhc------cCHHHHHHHHHHHcCCCcEEEE
Confidence                               146777788765 35566789999999999876      3578899999999999999999


Q ss_pred             eeCCCch
Q 047406          222 EPQPWVS  228 (290)
Q Consensus       222 ~~~~~~~  228 (290)
                      ....+..
T Consensus       134 ~~~~~~~  140 (240)
T TIGR02072       134 STFGPGT  140 (240)
T ss_pred             EeCCccC
Confidence            7654433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.53  E-value=3.2e-13  Score=126.36  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=107.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.+++.+++.+|..+++++|+ |.+++.+++++..                                
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  194 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------------------------------  194 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh--------------------------------
Confidence            4668999999999999999999999889999998 7899999887765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++.+++++...|+.+. +.+  .+|+|++..++|    .|+++....+++++++.|+|||.++
T Consensus       195 ----------------~gl~~rv~~~~~d~~~~-~~~--~~D~v~~~~~lh----~~~~~~~~~il~~~~~~L~pgG~l~  251 (306)
T TIGR02716       195 ----------------KGVADRMRGIAVDIYKE-SYP--EADAVLFCRILY----SANEQLSTIMCKKAFDAMRSGGRLL  251 (306)
T ss_pred             ----------------CCccceEEEEecCccCC-CCC--CCCEEEeEhhhh----cCChHHHHHHHHHHHHhcCCCCEEE
Confidence                            34556799999998753 222  369999888875    3456667899999999999999999


Q ss_pred             EeeCCCchhhhh--hhhhhhhhc---cccccccC-chhHHHHHHHHcCCeeeEec
Q 047406          221 LEPQPWVSYEKN--RRVSETTAT---NFQNIKLY-PKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       221 i~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~-~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      +....+......  ..+......   ......+. .+++.+ +++++||+.++..
T Consensus       252 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-ll~~aGf~~v~~~  305 (306)
T TIGR02716       252 ILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE-ILESLGYKDVTMV  305 (306)
T ss_pred             EEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHH-HHHHcCCCeeEec
Confidence            975433221100  001110000   00111122 355655 8999999988753

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=2.5e-13  Score=119.78  Aligned_cols=139  Identities=18%  Similarity=0.276  Sum_probs=98.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.  ..+|+|+|+|+.+++.++..+..                                
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~--------------------------------   74 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAA--------------------------------   74 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            46789999999999999999986  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ ..+.+...|+.+. +. .+.||+|+|..+++|++    .+....+++++.++|+|||+++
T Consensus        75 ----------------~~~-~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~~~----~~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207         75 ----------------ENL-DNLHTAVVDLNNL-TF-DGEYDFILSTVVLMFLE----AKTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             ----------------cCC-CcceEEecChhhC-Cc-CCCcCEEEEecchhhCC----HHHHHHHHHHHHHHcCCCcEEE
Confidence                            222 2366777777552 33 36799999999987653    4578899999999999999965


Q ss_pred             Ee-eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          221 LE-PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       221 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      +. ...+....        ....+ ...+.++++.+ +++  ||++++.
T Consensus       132 ~~~~~~~~~~~--------~~~~~-~~~~~~~el~~-~~~--~~~~~~~  168 (197)
T PRK11207        132 IVAAMDTADYP--------CTVGF-PFAFKEGELRR-YYE--GWEMVKY  168 (197)
T ss_pred             EEEEecCCCCC--------CCCCC-CCccCHHHHHH-HhC--CCeEEEe
Confidence            53 22111100        00011 23355566655 454  8998776

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.8e-13  Score=127.94  Aligned_cols=137  Identities=28%  Similarity=0.402  Sum_probs=100.9

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+.+...+|++|||+|||||++++..++ .++.+++|+|+||-+++.|+.|++.                        
T Consensus       153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~------------------------  207 (300)
T COG2264         153 LEALEKLLKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARL------------------------  207 (300)
T ss_pred             HHHHHHhhcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHH------------------------
Confidence            667888888999999999999999998655 5677899999999999999999887                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                              +++...+.....+....  ...++||+|+++=.-         +-+..+...+.++
T Consensus       208 ------------------------N~v~~~~~~~~~~~~~~--~~~~~~DvIVANILA---------~vl~~La~~~~~~  252 (300)
T COG2264         208 ------------------------NGVELLVQAKGFLLLEV--PENGPFDVIVANILA---------EVLVELAPDIKRL  252 (300)
T ss_pred             ------------------------cCCchhhhcccccchhh--cccCcccEEEehhhH---------HHHHHHHHHHHHH
Confidence                                    33322122222222221  123699999996432         4567899999999


Q ss_pred             cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++|||+++++.-                      --...+-....+.+.||.+++....
T Consensus       253 lkpgg~lIlSGI----------------------l~~q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         253 LKPGGRLILSGI----------------------LEDQAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             cCCCceEEEEee----------------------hHhHHHHHHHHHHhCCCeEeEEEec
Confidence            999999999742                      0111222333788899999999887

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=1.8e-13  Score=124.49  Aligned_cols=102  Identities=25%  Similarity=0.455  Sum_probs=84.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+.++                                  
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------   75 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------   75 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------------------------------
Confidence            4678999999999999999999887789999999999999987642                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|+.+. . +..+||+|+|..+++|+      .+...++.++.++|+|||.++
T Consensus        76 --------------------~~~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~~~  127 (258)
T PRK01683         76 --------------------PDCQFVEADIASW-Q-PPQALDLIFANASLQWL------PDHLELFPRLVSLLAPGGVLA  127 (258)
T ss_pred             --------------------CCCeEEECchhcc-C-CCCCccEEEEccChhhC------CCHHHHHHHHHHhcCCCcEEE
Confidence                                1366777777542 2 34689999999999887      356789999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      ++.+
T Consensus       128 ~~~~  131 (258)
T PRK01683        128 VQMP  131 (258)
T ss_pred             EECC
Confidence            9643

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.52  E-value=4.8e-13  Score=118.84  Aligned_cols=107  Identities=22%  Similarity=0.388  Sum_probs=86.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++.++..                               
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------------------------------   98 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-------------------------------   98 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-------------------------------
Confidence            3578999999999999999998876 46999999999999999886543                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++...+.+...|+.+ .+.+.+.||+|++..++++.      .+...++.++.++|+|||.+
T Consensus        99 -----------------~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l  154 (239)
T PRK00216         99 -----------------LGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAFGLRNV------PDIDKALREMYRVLKPGGRL  154 (239)
T ss_pred             -----------------cccccCeEEEeccccc-CCCCCCCccEEEEecccccC------CCHHHHHHHHHHhccCCcEE
Confidence                             2233457888888866 34445789999999888654      35788999999999999999


Q ss_pred             EEe
Q 047406          220 VLE  222 (290)
Q Consensus       220 ~i~  222 (290)
                      ++.
T Consensus       155 i~~  157 (239)
T PRK00216        155 VIL  157 (239)
T ss_pred             EEE
Confidence            874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.51  E-value=4e-14  Score=130.88  Aligned_cols=135  Identities=19%  Similarity=0.280  Sum_probs=99.3

Q ss_pred             CCcEEEecCCCC----hhhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHH-HHhhhhhhhhhhhchhhhhhccC
Q 047406           63 GKDCLDIGCNSG----IITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKI-VRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        63 ~~~vLDiGcG~G----~~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ..+||.+||++|    ++++.+++.++     ..+|+|+|||..+|+.|+..++.. -.....+.+.   ..-+|.+.+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~---~~ryF~~~~~  173 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPEL---LRRYFERGGD  173 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHH---HhhhEeecCC
Confidence            579999999999    46666666664     359999999999999999987761 1111111111   1224444444


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                      |.++.                  ..++...|.|.+.|+++..+ ..+.||+|+|++|+.    +++.+.+.+++.+++..
T Consensus       174 ~~y~v------------------~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLI----YFd~~~q~~il~~f~~~  230 (268)
T COG1352         174 GSYRV------------------KEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLI----YFDEETQERILRRFADS  230 (268)
T ss_pred             CcEEE------------------ChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEE----eeCHHHHHHHHHHHHHH
Confidence            44432                  23456689999999998644 568899999999994    45678999999999999


Q ss_pred             cCCCcEEEEee
Q 047406          213 LRPGGIFVLEP  223 (290)
Q Consensus       213 LkpgG~l~i~~  223 (290)
                      |+|||+|++.+
T Consensus       231 L~~gG~LflG~  241 (268)
T COG1352         231 LKPGGLLFLGH  241 (268)
T ss_pred             hCCCCEEEEcc
Confidence            99999999964

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.50  E-value=2e-12  Score=116.26  Aligned_cols=136  Identities=25%  Similarity=0.302  Sum_probs=98.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+|||+|||+|.++..++..++..+++|+|+|+.+++.|+.++..                                 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~---------------------------------  133 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR---------------------------------  133 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            34699999999999999999988878999999999999999988765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhh-----------------hhhcCCc---hH
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKW-----------------IHLNWGD---DG  201 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~-----------------~~l~~~~---~~  201 (290)
                                     .++. ++.+...|+.+.  .+.++||+|+|+.....                 ..+..+.   ..
T Consensus       134 ---------------~~~~-~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  195 (251)
T TIGR03534       134 ---------------LGLD-NVTFLQSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF  195 (251)
T ss_pred             ---------------cCCC-eEEEEECchhcc--CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence                           2222 488888888763  34578999999532110                 0000111   12


Q ss_pred             HHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          202 LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       202 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ...++..+.++|+|||.++++.+                       +...+....+++++||+.++++.+
T Consensus       196 ~~~~i~~~~~~L~~gG~~~~~~~-----------------------~~~~~~~~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       196 YRRIIAQAPRLLKPGGWLLLEIG-----------------------YDQGEAVRALFEAAGFADVETRKD  242 (251)
T ss_pred             HHHHHHHHHHhcccCCEEEEEEC-----------------------ccHHHHHHHHHHhCCCCceEEEeC
Confidence            25788999999999999999753                       111222334788999998888766

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.49  E-value=2.9e-13  Score=116.64  Aligned_cols=110  Identities=24%  Similarity=0.371  Sum_probs=87.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.+++.+++..+..+|+++|+++.+++.++.++..                                 
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~---------------------------------   77 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER---------------------------------   77 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH---------------------------------
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh---------------------------------
Confidence            67899999999999999999998877899999999999999999876                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     +++.. +.+...|+.+..  +.++||+|+|+.-++.-. .-+.+...+++.+..++|+|||.+++
T Consensus        78 ---------------n~~~~-v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   78 ---------------NGLEN-VEVVQSDLFEAL--PDGKFDLIVSNPPFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ---------------TTCTT-EEEEESSTTTTC--CTTCEEEEEE---SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cCccc-cccccccccccc--cccceeEEEEccchhccc-ccchhhHHHHHHHHHHhccCCCEEEE
Confidence                           44444 889999987743  368999999987653211 00123468999999999999999987


Q ss_pred             ee
Q 047406          222 EP  223 (290)
Q Consensus       222 ~~  223 (290)
                      ..
T Consensus       139 v~  140 (170)
T PF05175_consen  139 VI  140 (170)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.49  E-value=3.5e-13  Score=126.28  Aligned_cols=136  Identities=29%  Similarity=0.433  Sum_probs=98.2

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+.....+|.+|||+|||||++++..++ .++.+|+|+|++|.+++.|+.|+..                        
T Consensus       152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~------------------------  206 (295)
T PF06325_consen  152 LELLEKYVKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAEL------------------------  206 (295)
T ss_dssp             HHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHH------------------------
T ss_pred             HHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHH------------------------
Confidence            556777778899999999999999998555 5777999999999999999999887                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                              +++...+.+.  ..   .....++||+|+++-..         +-+..++..+.++
T Consensus       207 ------------------------N~~~~~~~v~--~~---~~~~~~~~dlvvANI~~---------~vL~~l~~~~~~~  248 (295)
T PF06325_consen  207 ------------------------NGVEDRIEVS--LS---EDLVEGKFDLVVANILA---------DVLLELAPDIASL  248 (295)
T ss_dssp             ------------------------TT-TTCEEES--CT---SCTCCS-EEEEEEES-H---------HHHHHHHHHCHHH
T ss_pred             ------------------------cCCCeeEEEE--Ee---cccccccCCEEEECCCH---------HHHHHHHHHHHHh
Confidence                                    4555545442  11   12234899999986443         5567889999999


Q ss_pred             cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCC
Q 047406          213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGL  274 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~  274 (290)
                      |+|||+|+++.-                     +.-..+.+.+ .+++ ||++++....+++
T Consensus       249 l~~~G~lIlSGI---------------------l~~~~~~v~~-a~~~-g~~~~~~~~~~~W  287 (295)
T PF06325_consen  249 LKPGGYLILSGI---------------------LEEQEDEVIE-AYKQ-GFELVEEREEGEW  287 (295)
T ss_dssp             EEEEEEEEEEEE---------------------EGGGHHHHHH-HHHT-TEEEEEEEEETTE
T ss_pred             hCCCCEEEEccc---------------------cHHHHHHHHH-HHHC-CCEEEEEEEECCE
Confidence            999999999742                     0111233444 5666 9999988777443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.48  E-value=1.5e-12  Score=115.99  Aligned_cols=151  Identities=20%  Similarity=0.305  Sum_probs=102.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|++++..                                
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~--------------------------------   99 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQG--------------------------------   99 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            46789999999999999998875  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .....++.+...|+.+.   + ++||+|++..+++++    ..+.+..++.++.+++++++++.
T Consensus       100 ----------------~~~~~~i~~~~~d~~~~---~-~~fD~ii~~~~l~~~----~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       100 ----------------RDVAGNVEFEVNDLLSL---C-GEFDIVVCMDVLIHY----PASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             ----------------cCCCCceEEEECChhhC---C-CCcCEEEEhhHHHhC----CHHHHHHHHHHHHHHhCCCEEEE
Confidence                            22223588899888652   2 789999999988544    23567889999999999877776


Q ss_pred             EeeCCCchhhhhhhhhhhhhc--cccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNRRVSETTAT--NFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +.+..+.. .....+......  ......+.+.+..+.+++.+||+++....
T Consensus       156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       156 FAPKTAWL-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             ECCCchHH-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence            64332111 111111111111  11222333444444489999999887643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=1.3e-14  Score=128.52  Aligned_cols=137  Identities=20%  Similarity=0.300  Sum_probs=80.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc----C-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF----N-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~----~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      +..+||.+||++|.-+..||...    +     ..+|+|+|+|+.+++.|++.++..-.....+   +....-+|.+...
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~---~~~~~ryf~~~~~  107 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLP---PAYLRRYFTERDG  107 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS----HHHHHHHEEEE-C
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhH---HHHHHHhccccCC
Confidence            34699999999995444444322    1     2489999999999999998765421111111   1111112211111


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                      +.++.                  ...+...+.|.+.|+.+ .+.+.+.||+|+|++|+.|    ++.+...+++..+++.
T Consensus       108 ~~~~v------------------~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY----F~~~~~~~vl~~l~~~  164 (196)
T PF01739_consen  108 GGYRV------------------KPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY----FDPETQQRVLRRLHRS  164 (196)
T ss_dssp             CCTTE-------------------HHHHTTEEEEE--TT--S------EEEEEE-SSGGG----S-HHHHHHHHHHHGGG
T ss_pred             CceeE------------------ChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE----eCHHHHHHHHHHHHHH
Confidence            11111                  23455689999999998 3456689999999999944    4578889999999999


Q ss_pred             cCCCcEEEEeeC
Q 047406          213 LRPGGIFVLEPQ  224 (290)
Q Consensus       213 LkpgG~l~i~~~  224 (290)
                      |+|||+|++.+.
T Consensus       165 L~pgG~L~lG~s  176 (196)
T PF01739_consen  165 LKPGGYLFLGHS  176 (196)
T ss_dssp             EEEEEEEEE-TT
T ss_pred             cCCCCEEEEecC
Confidence            999999999643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.47  E-value=8.5e-13  Score=123.53  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=87.8

Q ss_pred             CCCcEEEecCCCChhhH--HHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           62 EGKDCLDIGCNSGIITI--QIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~--~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ++++|+|||||.|.++.  .++..++..+++++|+|+++++.|++.+..                               
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------------------------------  171 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------------------------------  171 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------------------------------
Confidence            67999999999884433  334566777999999999999999998743                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      ..++.+++.|...|..+. ....+.||+|+|. +++    +|++++..+++.++.+.|+|||++
T Consensus       172 ----------------~~gL~~rV~F~~~Da~~~-~~~l~~FDlVF~~-ALi----~~dk~~k~~vL~~l~~~LkPGG~L  229 (296)
T PLN03075        172 ----------------DPDLSKRMFFHTADVMDV-TESLKEYDVVFLA-ALV----GMDKEEKVKVIEHLGKHMAPGALL  229 (296)
T ss_pred             ----------------ccCccCCcEEEECchhhc-ccccCCcCEEEEe-ccc----ccccccHHHHHHHHHHhcCCCcEE
Confidence                            145667899999999873 2234789999999 663    445678899999999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       230 vlr~  233 (296)
T PLN03075        230 MLRS  233 (296)
T ss_pred             EEec
Confidence            9964

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.47  E-value=1.6e-14  Score=112.59  Aligned_cols=99  Identities=23%  Similarity=0.501  Sum_probs=63.4

Q ss_pred             EEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHH
Q 047406           67 LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKK  146 (290)
Q Consensus        67 LDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (290)
                      ||+|||+|.++..+++.++..+++|+|+|+.+++.|++.+....                                    
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~------------------------------------   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG------------------------------------   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------------------------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------------------------------------
Confidence            79999999999999999888899999999999988887766511                                    


Q ss_pred             hhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          147 AISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       147 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                ......+.+...+...  ..+.++||+|++.++++|+      +++..++.++.++|+|||+|
T Consensus        45 ----------~~~~~~~~~~~~~~~~--~~~~~~fD~V~~~~vl~~l------~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   45 ----------NDNFERLRFDVLDLFD--YDPPESFDLVVASNVLHHL------EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -------------EEEEE--SSS-----CCC----SEEEEE-TTS--------S-HHHHHHHHTTT-TSS-EE
T ss_pred             ----------CcceeEEEeecCChhh--cccccccceehhhhhHhhh------hhHHHHHHHHHHHcCCCCCC
Confidence                      0111123344444322  1123699999999999887      57889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.46  E-value=2.1e-12  Score=114.73  Aligned_cols=182  Identities=21%  Similarity=0.222  Sum_probs=130.6

Q ss_pred             CchhhHHhhhhccCCCc-EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhh
Q 047406           49 EDPRFKVLKKEWFEGKD-CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEV  127 (290)
Q Consensus        49 ~~~~l~~l~~~~~~~~~-vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  127 (290)
                      .+|.++++.+.+....+ |||||||||.++..+|+.+|.....-+|+++..+.....++...                  
T Consensus        11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~------------------   72 (204)
T PF06080_consen   11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA------------------   72 (204)
T ss_pred             HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc------------------
Confidence            44678888888777776 99999999999999999999988999999999987777766541                  


Q ss_pred             hhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCC------CCCceeEEEEchhhhhhhhcCCch
Q 047406          128 IEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDS------PEKYYDAILCLSVTKWIHLNWGDD  200 (290)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~------~~~~fD~I~~~~vl~~~~l~~~~~  200 (290)
                                                    ++.+.......|.... ++.      ...+||.|+|.+++|-.    ...
T Consensus        73 ------------------------------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~----p~~  118 (204)
T PF06080_consen   73 ------------------------------GLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHIS----PWS  118 (204)
T ss_pred             ------------------------------CCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhc----CHH
Confidence                                          1111122334444432 222      24689999999998733    235


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEeeCCCch----hhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCC
Q 047406          201 GLITLFMRIWKLLRPGGIFVLEPQPWVS----YEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSS  276 (290)
Q Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~  276 (290)
                      ....+|..+.++|++||.|++-.+....    -..+..+...++..-+...+..-+....+..++|++.++++..     
T Consensus       119 ~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~M-----  193 (204)
T PF06080_consen  119 AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDM-----  193 (204)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccccc-----
Confidence            6789999999999999999995442211    1234555566665545556777677777999999999888876     


Q ss_pred             CCCCCCcceeeecC
Q 047406          277 SKTGFNRPIFLFRK  290 (290)
Q Consensus       277 ~~~~~~~~~~~~~k  290 (290)
                         --|-.+++|||
T Consensus       194 ---PANN~~Lvfrk  204 (204)
T PF06080_consen  194 ---PANNLLLVFRK  204 (204)
T ss_pred             ---CCCCeEEEEeC
Confidence               12456777776

The function of this family is unknown.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.46  E-value=1.5e-12  Score=118.84  Aligned_cols=130  Identities=28%  Similarity=0.405  Sum_probs=92.1

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      ..+.....++.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+.++..                         
T Consensus       111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~-------------------------  164 (250)
T PRK00517        111 EALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL-------------------------  164 (250)
T ss_pred             HHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH-------------------------
Confidence            34444456889999999999999887665 4455799999999999999998765                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                             +++...+.+...         ..+||+|+|+...         +....++.++.++|
T Consensus       165 -----------------------~~~~~~~~~~~~---------~~~fD~Vvani~~---------~~~~~l~~~~~~~L  203 (250)
T PRK00517        165 -----------------------NGVELNVYLPQG---------DLKADVIVANILA---------NPLLELAPDLARLL  203 (250)
T ss_pred             -----------------------cCCCceEEEccC---------CCCcCEEEEcCcH---------HHHHHHHHHHHHhc
Confidence                                   222222332221         1279999986443         34568899999999


Q ss_pred             CCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCC
Q 047406          214 RPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSG  272 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~  272 (290)
                      +|||+++++....                     -..+.+.+ .+.+.||+++.....+
T Consensus       204 kpgG~lilsgi~~---------------------~~~~~v~~-~l~~~Gf~~~~~~~~~  240 (250)
T PRK00517        204 KPGGRLILSGILE---------------------EQADEVLE-AYEEAGFTLDEVLERG  240 (250)
T ss_pred             CCCcEEEEEECcH---------------------hhHHHHHH-HHHHCCCEEEEEEEeC
Confidence            9999999974310                     01123333 7889999998877763

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.45  E-value=1.9e-12  Score=112.65  Aligned_cols=125  Identities=17%  Similarity=0.164  Sum_probs=93.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.+++.++..+|+++|+|+.+++.|++++..                                
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--------------------------------   77 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--------------------------------   77 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            577899999999999999999988777999999999999999988765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|....   ..+.||+|++....         ..+..++..+.+.|+|||.++
T Consensus        78 ----------------~~~-~~i~~~~~d~~~~---~~~~~D~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~lv  128 (187)
T PRK08287         78 ----------------FGC-GNIDIIPGEAPIE---LPGKADAIFIGGSG---------GNLTAIIDWSLAHLHPGGRLV  128 (187)
T ss_pred             ----------------hCC-CCeEEEecCchhh---cCcCCCEEEECCCc---------cCHHHHHHHHHHhcCCCeEEE
Confidence                            222 2477777776321   23579999986543         234678899999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      +.....                     -...+..+ ++++.||..+++
T Consensus       129 ~~~~~~---------------------~~~~~~~~-~l~~~g~~~~~~  154 (187)
T PRK08287        129 LTFILL---------------------ENLHSALA-HLEKCGVSELDC  154 (187)
T ss_pred             EEEecH---------------------hhHHHHHH-HHHHCCCCcceE
Confidence            853210                     01123333 788999986664

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.45  E-value=2.4e-12  Score=119.99  Aligned_cols=108  Identities=25%  Similarity=0.410  Sum_probs=82.3

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .+.....++.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+.++..                          
T Consensus       152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~--------------------------  204 (288)
T TIGR00406       152 WLEDLDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAEL--------------------------  204 (288)
T ss_pred             HHHhhcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH--------------------------
Confidence            3444456889999999999999988766 4556899999999999999998765                          


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                            +++...+.+...+...   ...++||+|+++...         +.+..++.++.++|+
T Consensus       205 ----------------------n~~~~~~~~~~~~~~~---~~~~~fDlVvan~~~---------~~l~~ll~~~~~~Lk  250 (288)
T TIGR00406       205 ----------------------NQVSDRLQVKLIYLEQ---PIEGKADVIVANILA---------EVIKELYPQFSRLVK  250 (288)
T ss_pred             ----------------------cCCCcceEEEeccccc---ccCCCceEEEEecCH---------HHHHHHHHHHHHHcC
Confidence                                  3333345555554322   235689999997654         345688999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      |||+++++.
T Consensus       251 pgG~li~sg  259 (288)
T TIGR00406       251 PGGWLILSG  259 (288)
T ss_pred             CCcEEEEEe
Confidence            999999964

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.45  E-value=1.7e-12  Score=103.76  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.++..+|+++|+|+.+++.++.++...                               
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------   66 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF-------------------------------   66 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh-------------------------------
Confidence            4578999999999999999999887779999999999999999887651                               


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                       ++ .++.+...|.....+....+||+|++....         .....++..+.+.|+|||.++
T Consensus        67 -----------------~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~li  119 (124)
T TIGR02469        67 -----------------GV-SNIVIVEGDAPEALEDSLPEPDRVFIGGSG---------GLLQEILEAIWRRLRPGGRIV  119 (124)
T ss_pred             -----------------CC-CceEEEeccccccChhhcCCCCEEEECCcc---------hhHHHHHHHHHHHcCCCCEEE
Confidence                             11 236677776543222234689999986543         345689999999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       120 ~~~  122 (124)
T TIGR02469       120 LNA  122 (124)
T ss_pred             EEe
Confidence            863

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.45  E-value=2e-13  Score=107.17  Aligned_cols=97  Identities=28%  Similarity=0.499  Sum_probs=76.0

Q ss_pred             EEEecCCCChhhHHHHhHc---CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           66 CLDIGCNSGIITIQIAQKF---NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        66 vLDiGcG~G~~~~~la~~~---~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      |||+|||+|..+..++..+   +..+++|+|+|+.+++.+++....                                  
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~----------------------------------   46 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE----------------------------------   46 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----------------------------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----------------------------------
Confidence            7999999999999999886   236999999999999999987553                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                    .+.  .+.+.+.|+.+ ++...++||+|+|. .+++|+    .++.+..+++++.++|+|||
T Consensus        47 --------------~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~~~~~~----~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   47 --------------DGP--KVRFVQADARD-LPFSDGKFDLVVCSGLSLHHL----SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --------------TTT--TSEEEESCTTC-HHHHSSSEEEEEE-TTGGGGS----SHHHHHHHHHHHHHTEEEEE
T ss_pred             --------------cCC--ceEEEECCHhH-CcccCCCeeEEEEcCCccCCC----CHHHHHHHHHHHHHHhCCCC
Confidence                          112  58889999976 55566799999995 447554    46788999999999999998

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.45  E-value=6.8e-13  Score=117.54  Aligned_cols=114  Identities=17%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|..+..+++.++..+|+|+|+|+++++.|..++..                                 
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~---------------------------------   86 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE---------------------------------   86 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH---------------------------------
Confidence            57899999999999999999988777999999999999999987654                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCC--chHHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWG--DDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~--~~~~~~~l~~~~~~LkpgG  217 (290)
                                     .++ .++.+.+.|+.+.++  .+.+.||+|++.....|......  ......+++++.++|+|||
T Consensus        87 ---------------~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG  150 (202)
T PRK00121         87 ---------------EGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG  150 (202)
T ss_pred             ---------------cCC-CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCC
Confidence                           223 357888888733233  35678999999766554321100  0124788999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       151 ~l~i~~~  157 (202)
T PRK00121        151 EIHFATD  157 (202)
T ss_pred             EEEEEcC
Confidence            9999643

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=1.3e-12  Score=121.96  Aligned_cols=154  Identities=22%  Similarity=0.259  Sum_probs=103.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|++|||||||+|.++..++.. ++..|+|+|.++..+.....--.-                                
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~--------------------------------  160 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHF--------------------------------  160 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHH--------------------------------
Confidence            57899999999999999998876 456899999988765554332111                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+....+.+.. ...+.++. .+.||+|+|..|+.|.      .+....|.++...|+|||.|+
T Consensus       161 ----------------lg~~~~~~~lp-lgvE~Lp~-~~~FDtVF~MGVLYHr------r~Pl~~L~~Lk~~L~~gGeLv  216 (315)
T PF08003_consen  161 ----------------LGQDPPVFELP-LGVEDLPN-LGAFDTVFSMGVLYHR------RSPLDHLKQLKDSLRPGGELV  216 (315)
T ss_pred             ----------------hCCCccEEEcC-cchhhccc-cCCcCEEEEeeehhcc------CCHHHHHHHHHHhhCCCCEEE
Confidence                            00011122221 22233455 5789999999999443      678899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCc-hhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYP-KEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++....+.....-+....+....++.+.| ..-...+++++||+.++++..
T Consensus       217 LETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  217 LETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             EEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence            976543332222222222333455666655 344455899999999999877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.44  E-value=1e-12  Score=115.67  Aligned_cols=140  Identities=13%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++.....                                 
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~---------------------------------   74 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR---------------------------------   74 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            5679999999999999999885  45899999999999999876543                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++  .+.+...|+.. .+. .++||+|+|..++++++    .+....+++++.++|+|||++++
T Consensus        75 ---------------~~~--~v~~~~~d~~~-~~~-~~~fD~I~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        75 ---------------ENL--PLRTDAYDINA-AAL-NEDYDFIFSTVVFMFLQ----AGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             ---------------hCC--CceeEeccchh-ccc-cCCCCEEEEecccccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence                           222  14555556533 222 35799999999986553    35678999999999999999666


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      .....    ... .   ......+..+.+.+..+ ++.  +|+++....
T Consensus       132 ~~~~~----~~~-~---~~~~~~~~~~~~~el~~-~f~--~~~~~~~~e  169 (195)
T TIGR00477       132 VAAMD----TAD-Y---PCHMPFSFTFKEDELRQ-YYA--DWELLKYNE  169 (195)
T ss_pred             EEecc----cCC-C---CCCCCcCccCCHHHHHH-HhC--CCeEEEeec
Confidence            42110    000 0   00001123466667766 443  688887763

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.43  E-value=7.2e-12  Score=112.20  Aligned_cols=151  Identities=20%  Similarity=0.330  Sum_probs=101.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  ..+++++|+++.+++.++.++..                                
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~--------------------------------   92 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALE--------------------------------   92 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHH--------------------------------
Confidence            46789999999999999988875  35899999999999999887543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+.  .+.+...++.+......+.||+|+|..++++.      .+...++..+.+.|+|||.++
T Consensus        93 ----------------~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~  148 (233)
T PRK05134         93 ----------------SGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV------PDPASFVRACAKLVKPGGLVF  148 (233)
T ss_pred             ----------------cCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhcc------CCHHHHHHHHHHHcCCCcEEE
Confidence                            111  35666666654221234789999999888644      356789999999999999999


Q ss_pred             EeeCCCchhhhhh------hhhhhh-hccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNR------RVSETT-ATNFQNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~------~~~~~~-~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +....-.......      ...... ........ +.++++.. ++.++||++++..+
T Consensus       149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~v~~~~  205 (233)
T PRK05134        149 FSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAA-WLRQAGLEVQDITG  205 (233)
T ss_pred             EEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHH-HHHHCCCeEeeeee
Confidence            9754211100000      000000 00011112 34455655 89999999998754

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.42  E-value=8.5e-12  Score=114.32  Aligned_cols=152  Identities=20%  Similarity=0.255  Sum_probs=101.9

Q ss_pred             HHHhhhcCC-Ccccccccccccccccc--CCCCCchh------hHHhhhhc---cCCCcEEEecCCCChhhHHHHhHcCC
Q 047406           19 QQLKKRKGK-DVFPFGNYKNYYGYRIG--QGLNEDPR------FKVLKKEW---FEGKDCLDIGCNSGIITIQIAQKFNC   86 (290)
Q Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~------l~~l~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~   86 (290)
                      ...++.++. .+|+.| +..|++..+.  .++.. |+      ++.+....   ..+.+|||+|||+|.++..++...+.
T Consensus        33 ~~~rr~~~~Pl~yi~g-~~~f~g~~~~v~~~vf~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~  110 (251)
T TIGR03704        33 MVDRRVAGLPLEHVLG-WAEFCGLRIAVDPGVFV-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDG  110 (251)
T ss_pred             HHHHHHcCCCHHHhcc-cCeEcCeEEEECCCCcC-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCC
Confidence            333444444 999999 6888876552  22222 22      22222221   12458999999999999999988777


Q ss_pred             ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEe
Q 047406           87 RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFK  166 (290)
Q Consensus        87 ~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  166 (290)
                      .+|+++|+|+.+++.|+.++..                                                .+    +.+.
T Consensus       111 ~~v~~vDis~~al~~A~~N~~~------------------------------------------------~~----~~~~  138 (251)
T TIGR03704       111 IELHAADIDPAAVRCARRNLAD------------------------------------------------AG----GTVH  138 (251)
T ss_pred             CEEEEEECCHHHHHHHHHHHHH------------------------------------------------cC----CEEE
Confidence            7999999999999999998764                                                11    3567


Q ss_pred             ecccccCCCC-CCCceeEEEEchhh---------------h--hhhhcCCchH---HHHHHHHHHhhcCCCcEEEEeeC
Q 047406          167 QENFVHGRDS-PEKYYDAILCLSVT---------------K--WIHLNWGDDG---LITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       167 ~~d~~~~~~~-~~~~fD~I~~~~vl---------------~--~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      +.|+.+..+. ..+.||+|+++.-.               +  ...++.+.++   ++.++..+.++|+|||.++++..
T Consensus       139 ~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       139 EGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             EeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            7776553221 13579999996321               0  1223333333   46889999999999999999865

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.42  E-value=4.3e-12  Score=111.57  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=84.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++.+..                                 
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---------------------------------   85 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---------------------------------   85 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence            6789999999999999999988764 589999999999998877532                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                        ....+.+...|+.+ .+.+.+.||+|++..++++.      .+...++.++.+.|+|||+++
T Consensus        86 ------------------~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l~  140 (223)
T TIGR01934        86 ------------------LPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRNV------TDIQKALREMYRVLKPGGRLV  140 (223)
T ss_pred             ------------------cCCCceEEecchhc-CCCCCCcEEEEEEeeeeCCc------ccHHHHHHHHHHHcCCCcEEE
Confidence                              12347788888766 34455789999998888644      457889999999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       141 ~~~  143 (223)
T TIGR01934       141 ILE  143 (223)
T ss_pred             EEE
Confidence            843

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.42  E-value=5.5e-12  Score=109.03  Aligned_cols=134  Identities=20%  Similarity=0.250  Sum_probs=96.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++...+  +|+++|+|+.+++.++.++..                                
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~--------------------------------   63 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL--------------------------------   63 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            4668999999999999999888643  899999999999999998764                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh----------hcC-----CchHHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH----------LNW-----GDDGLITL  205 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~----------l~~-----~~~~~~~~  205 (290)
                                      .+.  .+.+...|+.+.   ..++||+|+++...+...          ..+     +...+..+
T Consensus        64 ----------------~~~--~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (179)
T TIGR00537        64 ----------------NNV--GLDVVMTDLFKG---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRF  122 (179)
T ss_pred             ----------------cCC--ceEEEEcccccc---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHH
Confidence                            222  367778887553   235899999986542111          000     11225789


Q ss_pred             HHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          206 FMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       206 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.++.++|+|||.+++.....                     -...++.. ++++.||....+...
T Consensus       123 l~~~~~~Lk~gG~~~~~~~~~---------------------~~~~~~~~-~l~~~gf~~~~~~~~  166 (179)
T TIGR00537       123 LDELPEILKEGGRVQLIQSSL---------------------NGEPDTFD-KLDERGFRYEIVAER  166 (179)
T ss_pred             HHhHHHhhCCCCEEEEEEecc---------------------CChHHHHH-HHHhCCCeEEEEEEe
Confidence            999999999999999964310                     01234444 788999987776655

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=3.8e-12  Score=118.43  Aligned_cols=138  Identities=16%  Similarity=0.226  Sum_probs=97.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.++.++..                                 
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~---------------------------------  164 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEK---------------------------------  164 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            4569999999999999999885  45899999999999999887654                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++  .+.+...|+... + ..++||+|+|..++++++    .+....++.++.++|+|||++++
T Consensus       165 ---------------~~l--~v~~~~~D~~~~-~-~~~~fD~I~~~~vl~~l~----~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        165 ---------------ENL--NIRTGLYDINSA-S-IQEEYDFILSTVVLMFLN----RERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             ---------------cCC--ceEEEEechhcc-c-ccCCccEEEEcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEE
Confidence                           233  366667776542 2 257899999999987653    45788999999999999999766


Q ss_pred             eeC-CCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          222 EPQ-PWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ... ....+.         ...-....+.+.++.+ ++  .+|++++..
T Consensus       222 v~~~~~~~~~---------~~~p~~~~~~~~el~~-~~--~~~~i~~~~  258 (287)
T PRK12335        222 VCAMDTEDYP---------CPMPFSFTFKEGELKD-YY--QDWEIVKYN  258 (287)
T ss_pred             EEecccccCC---------CCCCCCcccCHHHHHH-Hh--CCCEEEEEe
Confidence            422 100000         0001123466667766 34  459988774

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.39  E-value=7e-12  Score=110.36  Aligned_cols=107  Identities=17%  Similarity=0.317  Sum_probs=83.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.+++.++... +..+|+++|+++.+++.+++++..                              
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~------------------------------   87 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK------------------------------   87 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            4678999999999999999988765 346899999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++..++.+...|..+..+...+.||.|++...         ...+..++..+.++|+|||.
T Consensus        88 ------------------~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---------~~~~~~~l~~~~~~LkpgG~  140 (198)
T PRK00377         88 ------------------FGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---------SEKLKEIISASWEIIKKGGR  140 (198)
T ss_pred             ------------------hCCCCCeEEEEechhhhHhhcCCCCCEEEECCC---------cccHHHHHHHHHHHcCCCcE
Confidence                              233345777777775533333468999997432         24567889999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       141 lv~~~  145 (198)
T PRK00377        141 IVIDA  145 (198)
T ss_pred             EEEEe
Confidence            99853

>PRK04266 fibrillarin; Provisional

Probab=99.39  E-value=1.5e-11  Score=111.25  Aligned_cols=139  Identities=13%  Similarity=0.106  Sum_probs=93.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++...+...|+|+|+++.+++.+.+.+..                                
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------------------------------  118 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------------------------------  118 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------------------------------
Confidence            588999999999999999999887645899999999999987765433                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                         ..++.+..+|..+..  ....+.||+|++....        .+....++.++.++|+|||.
T Consensus       119 -------------------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~--------p~~~~~~L~~~~r~LKpGG~  171 (226)
T PRK04266        119 -------------------RKNIIPILADARKPERYAHVVEKVDVIYQDVAQ--------PNQAEIAIDNAEFFLKDGGY  171 (226)
T ss_pred             -------------------cCCcEEEECCCCCcchhhhccccCCEEEECCCC--------hhHHHHHHHHHHHhcCCCcE
Confidence                               124666777764310  1113569999964221        12234568999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++.. +|.+.+...          ...... ++.. ..++++||+.++....
T Consensus       172 lvI~v-~~~~~d~~~----------~~~~~~-~~~~-~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        172 LLLAI-KARSIDVTK----------DPKEIF-KEEI-RKLEEGGFEILEVVDL  211 (226)
T ss_pred             EEEEE-ecccccCcC----------CHHHHH-HHHH-HHHHHcCCeEEEEEcC
Confidence            99962 232111100          000111 2233 4789999999988776

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.39  E-value=1.1e-11  Score=108.54  Aligned_cols=151  Identities=16%  Similarity=0.235  Sum_probs=96.2

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+.+.+.++.+|||+|||+|.++..++... ...++|+|+|+.+++.++..                           
T Consensus         4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---------------------------   55 (194)
T TIGR02081         4 LESILNLIPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---------------------------   55 (194)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---------------------------
Confidence            45566666788999999999999998887654 44789999999998887531                           


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                                                   .+.+.+.|+.+.. +.++++||+|+|..+++|+      .+...+++++.+
T Consensus        56 -----------------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~------~d~~~~l~e~~r  100 (194)
T TIGR02081        56 -----------------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT------RNPEEILDEMLR  100 (194)
T ss_pred             -----------------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC------cCHHHHHHHHHH
Confidence                                         2456666665433 2456789999999999876      356778888877


Q ss_pred             hcCCCcEEEEeeCCCchhhhhhhh------h--hhhhc---ccccccc-CchhHHHHHHHHcCCeeeEecc
Q 047406          212 LLRPGGIFVLEPQPWVSYEKNRRV------S--ETTAT---NFQNIKL-YPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       212 ~LkpgG~l~i~~~~~~~~~~~~~~------~--~~~~~---~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      .++   .+++..+.+.........      .  .....   +-.+..+ ...++.+ +++++||++++...
T Consensus       101 ~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-ll~~~Gf~v~~~~~  167 (194)
T TIGR02081       101 VGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFED-LCGELNLRILDRAA  167 (194)
T ss_pred             hCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHH-HHHHCCCEEEEEEE
Confidence            654   445544433222111000      0  00000   1112233 3445554 99999999987543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.38  E-value=3.5e-12  Score=113.43  Aligned_cols=103  Identities=17%  Similarity=0.296  Sum_probs=81.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..+.++.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+.++.                              
T Consensus        39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------------------   88 (204)
T TIGR03587        39 NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------------------   88 (204)
T ss_pred             HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------------------
Confidence            34567889999999999999999887666799999999999999976421                              


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                              .+.+.+.|+.+  +.++++||+|+|..+++|+.    .+.+..++.++.+++  ++
T Consensus        89 ------------------------~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~----p~~~~~~l~el~r~~--~~  136 (204)
T TIGR03587        89 ------------------------NINIIQGSLFD--PFKDNFFDLVLTKGVLIHIN----PDNLPTAYRELYRCS--NR  136 (204)
T ss_pred             ------------------------CCcEEEeeccC--CCCCCCEEEEEECChhhhCC----HHHHHHHHHHHHhhc--Cc
Confidence                                    24566777655  45678999999999996542    467889999999997  45


Q ss_pred             EEEEe
Q 047406          218 IFVLE  222 (290)
Q Consensus       218 ~l~i~  222 (290)
                      ++++.
T Consensus       137 ~v~i~  141 (204)
T TIGR03587       137 YILIA  141 (204)
T ss_pred             EEEEE
Confidence            66663

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.38  E-value=8.7e-13  Score=117.62  Aligned_cols=104  Identities=24%  Similarity=0.413  Sum_probs=90.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +..+|.|+|||+|..+..+++++|...|+|+|-|++|++.|...+                                   
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------------------------------   74 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------------------------------   74 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------------------------
Confidence            457999999999999999999999999999999999999996632                                   


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                         .++.|...|..+-  .|+.+.|+++++.++||+      ++-..+|.++...|.|||.|.+
T Consensus        75 -------------------p~~~f~~aDl~~w--~p~~~~dllfaNAvlqWl------pdH~~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          75 -------------------PDATFEEADLRTW--KPEQPTDLLFANAVLQWL------PDHPELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             -------------------CCCceecccHhhc--CCCCccchhhhhhhhhhc------cccHHHHHHHHHhhCCCceEEE
Confidence                               2488999998773  355789999999999999      3557899999999999999999


Q ss_pred             eeCCCc
Q 047406          222 EPQPWV  227 (290)
Q Consensus       222 ~~~~~~  227 (290)
                      +.+.+.
T Consensus       128 QmPdN~  133 (257)
T COG4106         128 QMPDNL  133 (257)
T ss_pred             ECCCcc
Confidence            877653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.38  E-value=1.7e-12  Score=114.56  Aligned_cols=102  Identities=26%  Similarity=0.473  Sum_probs=80.5

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .++||+|||.|.++..||.+  +.+++++|+|+.+++.|+..+..                                   
T Consensus        45 ~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~-----------------------------------   87 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG-----------------------------------   87 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred             ceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence            68999999999999999998  67999999999999999986543                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                                      ..++.+.+.++.+.  .|.+.||+|+++.++.|+.   +.+++..++.++...|+|||.|++.+
T Consensus        88 ----------------~~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen   88 ----------------LPHVEWIQADVPEF--WPEGRFDLIVLSEVLYYLD---DAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             -----------------SSEEEEES-TTT-----SS-EEEEEEES-GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----------------CCCeEEEECcCCCC--CCCCCeeEEEEehHhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence                            23689999998764  3678999999999997663   23678999999999999999999965

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.38  E-value=8.4e-12  Score=113.73  Aligned_cols=152  Identities=18%  Similarity=0.265  Sum_probs=108.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC------ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC------RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~------~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      ..++++||++||+|-++..+....+.      .+|+.+|+||++|..+++....                          
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~--------------------------  152 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK--------------------------  152 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh--------------------------
Confidence            46799999999999999988877665      6899999999999999986543                          


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCc--ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFD--IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                            ..+..  ...+..+|..+ +|+++.+||+..+.+.+..+      .+.++.+++.+|+
T Consensus       153 ----------------------~~l~~~~~~~w~~~dAE~-LpFdd~s~D~yTiafGIRN~------th~~k~l~EAYRV  203 (296)
T KOG1540|consen  153 ----------------------RPLKASSRVEWVEGDAED-LPFDDDSFDAYTIAFGIRNV------THIQKALREAYRV  203 (296)
T ss_pred             ----------------------cCCCcCCceEEEeCCccc-CCCCCCcceeEEEecceecC------CCHHHHHHHHHHh
Confidence                                  22332  37899999876 78999999999998887644      3678999999999


Q ss_pred             cCCCcEEEEeeCCCch------h------hhhhhhhhhhhc---cc-----cccccCchhHHHHHHHHcCCeeeE
Q 047406          213 LRPGGIFVLEPQPWVS------Y------EKNRRVSETTAT---NF-----QNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~------~------~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      |||||++.+-.-+-+.      +      .-...+.+++..   .|     ...++.+.+..+.+.+.+||..+.
T Consensus       204 LKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  204 LKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             cCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence            9999999983211100      0      000011111111   11     122466666666689999999886

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.38  E-value=2e-11  Score=108.26  Aligned_cols=152  Identities=21%  Similarity=0.347  Sum_probs=100.8

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+|||+|||+|.++..+++..  ..++++|+++.+++.++.++..                                 
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~---------------------------------   89 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKK---------------------------------   89 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence            47899999999999999887753  3699999999999999886654                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .+. ..+.+...|+.+......++||+|++..+++++      .+...++.++.++|+|||.+++
T Consensus        90 ---------------~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i  147 (224)
T TIGR01983        90 ---------------DPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFF  147 (224)
T ss_pred             ---------------cCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEE
Confidence                           111 136677777655321224789999999988755      4667899999999999999998


Q ss_pred             eeCCCchhhhhhhh--hhhhh-----cccccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRV--SETTA-----TNFQNIKL-YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ..............  .+...     .......+ .+.++.+ +++++||++++..+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~G~~i~~~~~~  204 (224)
T TIGR01983       148 STINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTS-WLESAGLRVKDVKGL  204 (224)
T ss_pred             EecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHH-HHHHcCCeeeeeeeE
Confidence            75432110000000  00000     00111122 3445555 889999999887644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.37  E-value=1.3e-11  Score=108.60  Aligned_cols=152  Identities=18%  Similarity=0.302  Sum_probs=110.4

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.|...+.+|.+|||+|||.|.+...+.... ..+.+|+|++++.+..+.++                           
T Consensus         4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r---------------------------   55 (193)
T PF07021_consen    4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR---------------------------   55 (193)
T ss_pred             HHHHHHHcCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc---------------------------
Confidence            44566667899999999999999998887754 56899999999988877652                           


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                                                   .+.+.++|+.+.+. .++++||.|+++.+++.+      ..+..+|.++.+
T Consensus        56 -----------------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~------~~P~~vL~EmlR  100 (193)
T PF07021_consen   56 -----------------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV------RRPDEVLEEMLR  100 (193)
T ss_pred             -----------------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhH------hHHHHHHHHHHH
Confidence                                         46788888877654 688999999999999866      356778777765


Q ss_pred             hcCCCcEEEEeeCCCchhhhhhh--------hhhhhhc---cccccccCc-hhHHHHHHHHcCCeeeEeccC
Q 047406          212 LLRPGGIFVLEPQPWVSYEKNRR--------VSETTAT---NFQNIKLYP-KEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       212 ~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~-~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +   |...+++.+++..+.....        ++..+-.   +-+++++-+ .+|.+ +.++.|+++++-..-
T Consensus       101 V---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~-lc~~~~i~I~~~~~~  168 (193)
T PF07021_consen  101 V---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED-LCRELGIRIEERVFL  168 (193)
T ss_pred             h---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH-HHHHCCCEEEEEEEE
Confidence            5   6778888887654433221        1222222   224555544 56655 999999999976543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK06922 hypothetical protein; Provisional

Probab=99.37  E-value=7.6e-12  Score=127.26  Aligned_cols=115  Identities=16%  Similarity=0.317  Sum_probs=91.6

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||+|||+|..+..+++.++..+++|+|+|+.+++.|+++...                              
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~------------------------------  464 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN------------------------------  464 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------------------------------
Confidence            34578999999999999999999888888999999999999999876432                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhh--c-----CCchHHHHHHHHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHL--N-----WGDDGLITLFMRI  209 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l--~-----~~~~~~~~~l~~~  209 (290)
                                        .+  .++.+.++|..+ ++  .++++||+|+++.++||+.-  .     ++.+.+..+++++
T Consensus       465 ------------------~g--~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI  523 (677)
T PRK06922        465 ------------------EG--RSWNVIKGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSA  523 (677)
T ss_pred             ------------------cC--CCeEEEEcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHH
Confidence                              11  246677778765 33  45678999999999986521  1     2346789999999


Q ss_pred             HhhcCCCcEEEEeeC
Q 047406          210 WKLLRPGGIFVLEPQ  224 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~  224 (290)
                      +++|+|||.+++...
T Consensus       524 ~RVLKPGGrLII~D~  538 (677)
T PRK06922        524 YEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHcCCCcEEEEEeC
Confidence            999999999999754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.36  E-value=7.1e-12  Score=121.19  Aligned_cols=112  Identities=19%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +.+|||+|||+|.+++.+++.+|..+|+++|+|+.+++.|+.++....                                
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~--------------------------------  276 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM--------------------------------  276 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------------------------------
Confidence            369999999999999999999888899999999999999999876510                                


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    .+....+.+...|.....  +..+||+|+|+...|+.+. ..++...+++..+.++|+|||.|+++
T Consensus       277 --------------~~~~~~v~~~~~D~l~~~--~~~~fDlIlsNPPfh~~~~-~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        277 --------------PEALDRCEFMINNALSGV--EPFRFNAVLCNPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             --------------cccCceEEEEEccccccC--CCCCEEEEEECcCcccCcc-CCHHHHHHHHHHHHHhcccCCEEEEE
Confidence                          001125788888876532  3468999999877764431 23345578999999999999999997


Q ss_pred             e
Q 047406          223 P  223 (290)
Q Consensus       223 ~  223 (290)
                      .
T Consensus       340 ~  340 (378)
T PRK15001        340 A  340 (378)
T ss_pred             E
Confidence            5

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.36  E-value=3.4e-12  Score=119.28  Aligned_cols=137  Identities=18%  Similarity=0.256  Sum_probs=92.1

Q ss_pred             CCcEEEecCCCChhhHHHHhH----cC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc---
Q 047406           63 GKDCLDIGCNSGIITIQIAQK----FN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG---  131 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~----~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  131 (290)
                      ..+||.+||++|.-++.||..    .+    ..+|+|+|||+.+++.|+..++..-.....+.+.-   .-+|.+.+   
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~---~ryF~~~~~~~  192 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQL---QRYFMRGTGPH  192 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHH---HHHcccccCCC
Confidence            369999999999655544442    22    25799999999999999998765322211111111   11222211   


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                      .+.++.                  ...+...+.|.+.|+.+....+.+.||+|+|.+++.|+    +.+...+++.++.+
T Consensus       193 ~~~~~v------------------~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF----~~~~~~~vl~~l~~  250 (287)
T PRK10611        193 EGLVRV------------------RQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF----DKTTQERILRRFVP  250 (287)
T ss_pred             CceEEE------------------ChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC----CHHHHHHHHHHHHH
Confidence            111111                  13455679999999987322235789999999999443    56788999999999


Q ss_pred             hcCCCcEEEEeeC
Q 047406          212 LLRPGGIFVLEPQ  224 (290)
Q Consensus       212 ~LkpgG~l~i~~~  224 (290)
                      .|+|||+|++.+.
T Consensus       251 ~L~pgG~L~lG~s  263 (287)
T PRK10611        251 LLKPDGLLFAGHS  263 (287)
T ss_pred             HhCCCcEEEEeCc
Confidence            9999999999653

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.36  E-value=1.5e-11  Score=109.35  Aligned_cols=150  Identities=20%  Similarity=0.304  Sum_probs=97.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+.+...                                
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~--------------------------------  107 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPE--------------------------------  107 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            467899999999999999988763  4799999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++...+.+...|+.    ...+.||+|+|..+++++    ..+....++..+.+.+++++++.
T Consensus       108 ----------------~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~l~~~----~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        108 ----------------AGLAGNITFEVGDLE----SLLGRFDTVVCLDVLIHY----PQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             ----------------cCCccCcEEEEcCch----hccCCcCEEEEcchhhcC----CHHHHHHHHHHHHhhcCCeEEEE
Confidence                            222245788888842    235789999999998543    34677889999988776555444


Q ss_pred             EeeCCCchhhh-hhhhhhhhhc--cccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEK-NRRVSETTAT--NFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.  +...... ...+...+..  ...... +...++.. ++.++||++++....
T Consensus       164 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  215 (230)
T PRK07580        164 FA--PYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRR-ALAAAGFKVVRTERI  215 (230)
T ss_pred             EC--CccHHHHHHHHhccccCCccCCCCccccCHHHHHH-HHHHCCCceEeeeec
Confidence            32  1111111 0111111100  111122 33344555 889999998887543

>PLN02672 methionine S-methyltransferase

Probab=99.35  E-value=1.7e-11  Score=131.12  Aligned_cols=130  Identities=24%  Similarity=0.353  Sum_probs=90.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.+++.+++.++..+|+|+|+|+.+++.|+.|+........                |  ..      
T Consensus       118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~----------------~--~~------  173 (1082)
T PLN02672        118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDD----------------G--LP------  173 (1082)
T ss_pred             CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccc----------------c--cc------
Confidence            35689999999999999999998877999999999999999999875210000                0  00      


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch--------------hhh------------hhhh
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS--------------VTK------------WIHL  195 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~--------------vl~------------~~~l  195 (290)
                               ..+.....+.+++.|.+.|+.+........||+|+|+.              +.+            ++.+
T Consensus       174 ---------~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL  244 (1082)
T PLN02672        174 ---------VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCAL  244 (1082)
T ss_pred             ---------ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccc
Confidence                     00000012334689999998774322123699999951              111            2344


Q ss_pred             cC---CchHH---HHHHHHHHhhcCCCcEEEEeeC
Q 047406          196 NW---GDDGL---ITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       196 ~~---~~~~~---~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ..   +.+++   ++++.+..++|+|||.++++.+
T Consensus       245 ~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG  279 (1082)
T PLN02672        245 QGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG  279 (1082)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            33   25555   6889999999999999999987

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.35  E-value=1.3e-11  Score=121.89  Aligned_cols=106  Identities=20%  Similarity=0.297  Sum_probs=85.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.+...                                    
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~------------------------------------   78 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESI------------------------------------   78 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHH------------------------------------
Confidence            56799999999999999999873  4899999999999876541                                    


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeeccccc-CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVH-GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                     .+...++.+.+.|+.+ ..+.+.++||+|+|..+++|+.    ++.+..++.++.++|+|||+++
T Consensus        79 ---------------~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~----~~~~~~~l~~~~r~Lk~gG~l~  139 (475)
T PLN02336         79 ---------------NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLS----DKEVENLAERMVKWLKVGGYIF  139 (475)
T ss_pred             ---------------hccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCC----HHHHHHHHHHHHHhcCCCeEEE
Confidence                           1112357888888864 2455678999999999997663    4567899999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       140 ~~d~  143 (475)
T PLN02336        140 FRES  143 (475)
T ss_pred             EEec
Confidence            9654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.35  E-value=3.1e-11  Score=105.69  Aligned_cols=147  Identities=21%  Similarity=0.235  Sum_probs=107.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.++||||||+|++++.++...|..+|+++|-++++++..+.|...+                              
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------------------------------   81 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------------------------------   81 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------------------------------
Confidence            36889999999999999999998778889999999999999999998873                              


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                        + .+++.+..++.-+.++... .||.|+....          ..+..+++.++..|+|||.+
T Consensus        82 ------------------g-~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg----------~~i~~ile~~~~~l~~ggrl  131 (187)
T COG2242          82 ------------------G-VDNLEVVEGDAPEALPDLP-SPDAIFIGGG----------GNIEEILEAAWERLKPGGRL  131 (187)
T ss_pred             ------------------C-CCcEEEEeccchHhhcCCC-CCCEEEECCC----------CCHHHHHHHHHHHcCcCCeE
Confidence                              2 3568888888766544332 7999996332          57789999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCC-eeeEeccC-CCCCCCCCCCC--cceeee
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGF-RTVEDIGS-GGLSSSKTGFN--RPIFLF  288 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf-~~v~~~~~-~~~~~~~~~~~--~~~~~~  288 (290)
                      +...-.                      +-...-.-..+++.|| +++++..+ +....+.+.|.  .|+++.
T Consensus       132 V~nait----------------------lE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~~~~nPv~i~  182 (187)
T COG2242         132 VANAIT----------------------LETLAKALEALEQLGGREIVQVQISRGKPLGGGTMFRPVNPVFII  182 (187)
T ss_pred             EEEeec----------------------HHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEeecCCCEEEE
Confidence            995321                      1111112226889999 77766544 22233344443  465543

>PRK05785 hypothetical protein; Provisional

Probab=99.34  E-value=9.6e-12  Score=112.18  Aligned_cols=92  Identities=13%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+++++.|+..                                   
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------------------------------   93 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------------------------------   93 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------------------------------
Confidence            457899999999999999998876 45899999999999998652                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                            ..+.+.|+.+ +|.++++||+|+|..+++|+      ++....++++.++|+|.+
T Consensus        94 ----------------------~~~~~~d~~~-lp~~d~sfD~v~~~~~l~~~------~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         94 ----------------------DDKVVGSFEA-LPFRDKSFDVVMSSFALHAS------DNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ----------------------cceEEechhh-CCCCCCCEEEEEecChhhcc------CCHHHHHHHHHHHhcCce
Confidence                                  1234566655 57778999999999999765      467899999999999953

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=112.62  Aligned_cols=112  Identities=20%  Similarity=0.238  Sum_probs=91.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+|||+|||+|.+++++|++.+..+|+++|+++.+.+.|++++..                                
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--------------------------------   90 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--------------------------------   90 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--------------------------------
Confidence            346899999999999999999998888999999999999999999876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhh----------------hhhhcCCchHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTK----------------WIHLNWGDDGLI  203 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~----------------~~~l~~~~~~~~  203 (290)
                                      +.+.+++++.+.|+.+.... ...+||+|+|+.-..                |.    ..-+++
T Consensus        91 ----------------n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e----~~~~le  150 (248)
T COG4123          91 ----------------NPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE----ITLDLE  150 (248)
T ss_pred             ----------------CcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh----hcCCHH
Confidence                            56777899999999874333 234699999963221                11    122467


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+++...++|+|||.+++.++
T Consensus       151 ~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         151 DLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             HHHHHHHHHccCCCEEEEEec
Confidence            999999999999999999866

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.34  E-value=2e-11  Score=118.28  Aligned_cols=102  Identities=24%  Similarity=0.421  Sum_probs=83.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++..                                
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~--------------------------------  212 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG--------------------------------  212 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc--------------------------------
Confidence            5789999999999999999988764 4899999999999999885422                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                        +  .+.+...|+.+.    .++||.|++..+++|+    +......+++++.++|+|||+++
T Consensus       213 ------------------l--~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv----g~~~~~~~l~~i~r~LkpGG~lv  264 (383)
T PRK11705        213 ------------------L--PVEIRLQDYRDL----NGQFDRIVSVGMFEHV----GPKNYRTYFEVVRRCLKPDGLFL  264 (383)
T ss_pred             ------------------C--eEEEEECchhhc----CCCCCEEEEeCchhhC----ChHHHHHHHHHHHHHcCCCcEEE
Confidence                              1  256677776542    4689999999988765    24567899999999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       265 l~~  267 (383)
T PRK11705        265 LHT  267 (383)
T ss_pred             EEE
Confidence            964

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.32  E-value=7.2e-12  Score=99.91  Aligned_cols=112  Identities=23%  Similarity=0.268  Sum_probs=84.4

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      |.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.++..                                  
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~----------------------------------   45 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR----------------------------------   45 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH----------------------------------
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH----------------------------------
Confidence            5689999999999999998886 67999999999999999998766                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhc--CCchHHHHHHHHHHhhcCCCcEE
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLN--WGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~--~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                    .++...+.+...|+.+.. ..+..+||+|+++.-.....-+  ...+....+++++.++|+|||.+
T Consensus        46 --------------~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~  111 (117)
T PF13659_consen   46 --------------NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL  111 (117)
T ss_dssp             --------------CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred             --------------ccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence                          344456899999987742 3456899999997554211000  01124578899999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       112 ~~~~  115 (117)
T PF13659_consen  112 VFIT  115 (117)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9854

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.32  E-value=4e-11  Score=113.46  Aligned_cols=153  Identities=18%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+.+....+.                              
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~------------------------------  191 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALA------------------------------  191 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhccc------------------------------
Confidence            5789999999999999999885  45899999999999999987654100                              


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                    .......+.|...|+.+    ..+.||+|+|..+++|+    .++....++..+.+ +.++|+++.
T Consensus       192 --------------~~~~~~~~~f~~~Dl~~----l~~~fD~Vv~~~vL~H~----p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        192 --------------ALPPEVLPKFEANDLES----LSGKYDTVTCLDVLIHY----PQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             --------------ccccccceEEEEcchhh----cCCCcCEEEEcCEEEec----CHHHHHHHHHHHHh-hcCCEEEEE
Confidence                          00011246777777643    24789999999998543    23455667777765 455555443


Q ss_pred             eeCCCchhhhhhhhhhhhhcc--cccccc-CchhHHHHHHHHcCCeeeEecc
Q 047406          222 EPQPWVSYEKNRRVSETTATN--FQNIKL-YPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ..+....+.......+.+...  .....+ .++++.+ +++++||+++....
T Consensus       249 ~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~-lL~~AGf~v~~~~~  299 (315)
T PLN02585        249 FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER-ALKKAGWKVARREM  299 (315)
T ss_pred             eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH-HHHHCCCEEEEEEE
Confidence            222211111111111111110  011123 3455554 89999999876543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=3e-11  Score=107.19  Aligned_cols=103  Identities=17%  Similarity=0.273  Sum_probs=81.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++..                               
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-------------------------------  119 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-------------------------------  119 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            4778999999999999999888764 35899999999999999988765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+..+ ...+||+|++...+.++            .+.+.+.|+|||+|
T Consensus       120 -----------------~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~------------~~~l~~~L~~gG~l  169 (205)
T PRK13944        120 -----------------LGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAASTI------------PSALVRQLKDGGVL  169 (205)
T ss_pred             -----------------cCCCCcEEEEECCcccCCc-cCCCccEEEEccCcchh------------hHHHHHhcCcCcEE
Confidence                             2333457888889876433 34689999998776432            24678999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       170 vi~~~  174 (205)
T PRK13944        170 VIPVE  174 (205)
T ss_pred             EEEEc
Confidence            98543

>PRK14968 putative methyltransferase; Provisional

Probab=99.31  E-value=8.2e-11  Score=101.05  Aligned_cols=136  Identities=21%  Similarity=0.304  Sum_probs=94.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..  ..+++++|+|+.+++.+++++..                                
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~--------------------------------   67 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKL--------------------------------   67 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            47789999999999999999887  46999999999999999887754                                


Q ss_pred             HHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhh----------hhhc--C---CchHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKW----------IHLN--W---GDDGLIT  204 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~----------~~l~--~---~~~~~~~  204 (290)
                                      .++.. .+.+...|+.+.  .+...||+|+++.....          .+..  .   +...+..
T Consensus        68 ----------------~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (188)
T PRK14968         68 ----------------NNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDR  129 (188)
T ss_pred             ----------------cCCCCcceEEEecccccc--ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHH
Confidence                            12211 266777887663  23458999998643210          0000  0   1233577


Q ss_pred             HHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          205 LFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +++++.++|+|||.+++.....                     ...+... .++.++||+++....
T Consensus       130 ~i~~~~~~Lk~gG~~~~~~~~~---------------------~~~~~l~-~~~~~~g~~~~~~~~  173 (188)
T PRK14968        130 FLDEVGRYLKPGGRILLLQSSL---------------------TGEDEVL-EYLEKLGFEAEVVAE  173 (188)
T ss_pred             HHHHHHHhcCCCeEEEEEEccc---------------------CCHHHHH-HHHHHCCCeeeeeee
Confidence            8999999999999998864311                     0112333 378899998775543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.31  E-value=4.5e-11  Score=104.85  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++.++..                                
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~--------------------------------   86 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR--------------------------------   86 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999999998776667999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|..+.++.....+|.++...          ......++.++.++|+|||.++
T Consensus        87 ----------------~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~----------~~~~~~~l~~~~~~LkpgG~li  139 (196)
T PRK07402         87 ----------------FGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG----------GRPIKEILQAVWQYLKPGGRLV  139 (196)
T ss_pred             ----------------hCC-CCeEEEECchHHHHhhCCCCCCEEEEEC----------CcCHHHHHHHHHHhcCCCeEEE
Confidence                            222 2477777776542222223456665421          1345788999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       140 ~~~~  143 (196)
T PRK07402        140 ATAS  143 (196)
T ss_pred             EEee
Confidence            9754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.31  E-value=2.3e-11  Score=107.45  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=81.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.++||+|||.|..+..+|.+  +..|+++|+|+.+++.+...+..                                
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~--------------------------------   74 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE--------------------------------   74 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh--------------------------------
Confidence            35689999999999999999997  56899999999999998775543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++  .|.....|+.+. . ..+.||+|++..++++++    .+....++.++...++|||+++
T Consensus        75 ----------------~~l--~i~~~~~Dl~~~-~-~~~~yD~I~st~v~~fL~----~~~~~~i~~~m~~~~~pGG~~l  130 (192)
T PF03848_consen   75 ----------------EGL--DIRTRVADLNDF-D-FPEEYDFIVSTVVFMFLQ----RELRPQIIENMKAATKPGGYNL  130 (192)
T ss_dssp             ----------------TT---TEEEEE-BGCCB-S--TTTEEEEEEESSGGGS-----GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------cCc--eeEEEEecchhc-c-ccCCcCEEEEEEEeccCC----HHHHHHHHHHHHhhcCCcEEEE
Confidence                            233  378888887653 2 246899999988887664    4677899999999999999998


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      ++.
T Consensus       131 i~~  133 (192)
T PF03848_consen  131 IVT  133 (192)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            853

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.30  E-value=2.8e-11  Score=115.75  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+.++..                                  
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----------------------------------  242 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----------------------------------  242 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence            4589999999999999999988878999999999999999998765                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    +++.  ..+...|....   ..++||+|+|+..+|+. +....+....++.++.+.|+|||.|++.
T Consensus       243 --------------n~l~--~~~~~~D~~~~---~~~~fDlIvsNPPFH~g-~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        243 --------------NGLE--GEVFASNVFSD---IKGRFDMIISNPPFHDG-IQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             --------------cCCC--CEEEEcccccc---cCCCccEEEECCCccCC-ccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence                          2221  34556665442   35789999999887642 1223356689999999999999999997


Q ss_pred             eCCCc
Q 047406          223 PQPWV  227 (290)
Q Consensus       223 ~~~~~  227 (290)
                      ...+.
T Consensus       303 an~~l  307 (342)
T PRK09489        303 ANAFL  307 (342)
T ss_pred             EeCCC
Confidence            65433

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.28  E-value=2.4e-11  Score=106.86  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ...++||||||+|.++..+|+.+|..+++|+|+++.+++.|..++..                                 
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~---------------------------------   62 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK---------------------------------   62 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---------------------------------
Confidence            45799999999999999999999888999999999999999887765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG  217 (290)
                                     .++ .++.+.+.|+.+..  ..+.+.+|.|+++....|..-.....  ....++..+.++|+|||
T Consensus        63 ---------------~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG  126 (194)
T TIGR00091        63 ---------------LGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG  126 (194)
T ss_pred             ---------------hCC-CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence                           233 26889999986521  12346899999876554431100000  11578999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .|++...
T Consensus       127 ~l~~~td  133 (194)
T TIGR00091       127 VIHFKTD  133 (194)
T ss_pred             EEEEEeC
Confidence            9999754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK06202 hypothetical protein; Provisional

Probab=99.28  E-value=4.5e-11  Score=107.45  Aligned_cols=103  Identities=22%  Similarity=0.233  Sum_probs=74.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      .++.+|||+|||+|.++..++...    +..+|+|+|+|+.+++.|+.....                            
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----------------------------  110 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----------------------------  110 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----------------------------
Confidence            456799999999999988887643    245899999999999999875321                            


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                          .    .+.+...+... ++.++++||+|+|+.++||+.    ++....++.++.++++  
T Consensus       111 --------------------~----~~~~~~~~~~~-l~~~~~~fD~V~~~~~lhh~~----d~~~~~~l~~~~r~~~--  159 (232)
T PRK06202        111 --------------------P----GVTFRQAVSDE-LVAEGERFDVVTSNHFLHHLD----DAEVVRLLADSAALAR--  159 (232)
T ss_pred             --------------------C----CCeEEEEeccc-ccccCCCccEEEECCeeecCC----hHHHHHHHHHHHHhcC--
Confidence                                1    13333333322 233557899999999998773    3456789999999998  


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |.+++.
T Consensus       160 ~~~~i~  165 (232)
T PRK06202        160 RLVLHN  165 (232)
T ss_pred             eeEEEe
Confidence            445553

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.24  E-value=5.6e-11  Score=103.71  Aligned_cols=136  Identities=22%  Similarity=0.312  Sum_probs=100.8

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||+|||+|.+...|++.......+|+|+|+.+++.|+.-++.                                   
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~-----------------------------------  113 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER-----------------------------------  113 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh-----------------------------------
Confidence            399999999999999999886555689999999999998775544                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCC--chHHHHHHHHHHhhcCCCcEEEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG--DDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~--~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                   .+..+.|.|.+.|+.+. ....+.||+|+=-.++.-+.|..+  ...+.-.+..+.++|+|||+++|
T Consensus       114 -------------~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI  179 (227)
T KOG1271|consen  114 -------------DGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI  179 (227)
T ss_pred             -------------cCCCcceeEEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence                         45555699999999884 445688999987666543433321  11223557788999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ..-+                      ++.++..+ .+++-||.....+..
T Consensus       180 tSCN----------------------~T~dELv~-~f~~~~f~~~~tvp~  206 (227)
T KOG1271|consen  180 TSCN----------------------FTKDELVE-EFENFNFEYLSTVPT  206 (227)
T ss_pred             EecC----------------------ccHHHHHH-HHhcCCeEEEEeecc
Confidence            5432                      55577777 577788887776655

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.23  E-value=1.8e-10  Score=103.21  Aligned_cols=119  Identities=14%  Similarity=0.088  Sum_probs=81.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||.|..+..+|.+  +.+|+|+|+|+.+++.+......   .                     ..     
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~---~---------------------~~-----   81 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGL---T---------------------PT-----   81 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCC---C---------------------cc-----
Confidence            47789999999999999999986  56899999999999976331100   0                     00     


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                              ...++.....-...+.+.+.|+.+......+.||.|+-..+++  |+  ..+.....+..+.++|+|||+++
T Consensus        82 --------~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~--~l--~~~~R~~~~~~l~~lLkpgG~~l  149 (213)
T TIGR03840        82 --------VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALI--AL--PEEMRQRYAAHLLALLPPGARQL  149 (213)
T ss_pred             --------eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhc--cC--CHHHHHHHHHHHHHHcCCCCeEE
Confidence                    0000000000123589999999874222246799999988774  43  24556789999999999999866


Q ss_pred             Ee
Q 047406          221 LE  222 (290)
Q Consensus       221 i~  222 (290)
                      +.
T Consensus       150 l~  151 (213)
T TIGR03840       150 LI  151 (213)
T ss_pred             EE
Confidence            64

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.23  E-value=1.3e-10  Score=110.25  Aligned_cols=135  Identities=19%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||+|||+|.+++..+..  ...++|+|+|+.++..|+.++..                              
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~------------------------------  226 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEH------------------------------  226 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence            4578899999999999998886553  45899999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHhhcCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                        .++.. +.+...|+.+ ++.+.+.||+|+|..-..   ........+....++..+.++|+|
T Consensus       227 ------------------~g~~~-i~~~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~  286 (329)
T TIGR01177       227 ------------------YGIED-FFVKRGDATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS  286 (329)
T ss_pred             ------------------hCCCC-CeEEecchhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence                              22222 6788888876 455567899999953210   000000012357899999999999


Q ss_pred             CcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          216 GGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       216 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ||.+++..+..                        .++.+ +++.+|| ++..+..
T Consensus       287 gG~lv~~~~~~------------------------~~~~~-~~~~~g~-i~~~~~~  316 (329)
T TIGR01177       287 EGWIVYAVPTR------------------------IDLES-LAEDAFR-VVKRFEV  316 (329)
T ss_pred             CcEEEEEEcCC------------------------CCHHH-HHhhcCc-chheeee
Confidence            99999865421                        12333 6888999 7776664

This family is found exclusively in the Archaea.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.22  E-value=1.3e-11  Score=113.50  Aligned_cols=178  Identities=19%  Similarity=0.168  Sum_probs=110.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|.++||||||+-......|..+ ..+|+..|.++..++..+++++.         + .+++|.|+.++.+.+|.....
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~---------~-~a~DWs~~~~~v~~lEg~~~~  123 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRK---------E-GAFDWSPFWKYVCELEGKREK  123 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-----------TS--THHHHHHHHHHTTSSSG
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCC---------C-CCCCccHHHHHHHhccCCcch
Confidence            356799999999987755544332 34899999999999999999876         5 899999999999988853322


Q ss_pred             HHHHHHhhhcCCCccccCcCcce-eEeecccccCCCCCC-----CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIV-SFKQENFVHGRDSPE-----KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~-----~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                      ..+ ++.          .+...| .+...|..+.-|...     .+||+|++.+++...  .-+.+.....++++.++||
T Consensus       124 ~~e-~e~----------~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a--~~d~~~y~~al~ni~~lLk  190 (256)
T PF01234_consen  124 WEE-KEE----------KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA--CKDLDEYRRALRNISSLLK  190 (256)
T ss_dssp             HHH-HHH----------HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH---SSHHHHHHHHHHHHTTEE
T ss_pred             hhh-HHH----------HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH--cCCHHHHHHHHHHHHHHcC
Confidence            211 111          122222 356667666433322     359999999999644  3456677899999999999


Q ss_pred             CCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          215 PGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       215 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      |||.|++...--      ..........|+.+.+. +++.+..++++||.+++..
T Consensus       191 pGG~Lil~~~l~------~t~Y~vG~~~F~~l~l~-ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  191 PGGHLILAGVLG------STYYMVGGHKFPCLPLN-EEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             EEEEEEEEEESS-------SEEEETTEEEE---B--HHHHHHHHHHTTEEEEEEE
T ss_pred             CCcEEEEEEEcC------ceeEEECCEecccccCC-HHHHHHHHHHcCCEEEecc
Confidence            999999953211      11111111224444444 4455558999999988776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.22  E-value=1.1e-10  Score=104.14  Aligned_cols=103  Identities=24%  Similarity=0.278  Sum_probs=80.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||||||+|..+..++...+ ..+|+++|+++.+++.|+.++..                              
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------------------------  124 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------------------------  124 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            35789999999999999999998764 24699999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ +++.+...|..+..+ ...+||+|++.....            .+...+.+.|+|||+
T Consensus       125 ------------------~g~-~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~------------~~~~~~~~~L~~gG~  172 (215)
T TIGR00080       125 ------------------LGL-DNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP------------KIPEALIDQLKEGGI  172 (215)
T ss_pred             ------------------CCC-CCeEEEECCcccCCc-ccCCCCEEEEcCCcc------------cccHHHHHhcCcCcE
Confidence                              233 358888888876422 346899999865542            233567889999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++...
T Consensus       173 lv~~~~  178 (215)
T TIGR00080       173 LVMPVG  178 (215)
T ss_pred             EEEEEc
Confidence            999644

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.22  E-value=2.1e-10  Score=102.41  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=87.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++..+. ..|+|+|+++.         ..                              
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~------------------------------   89 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP------------------------------   89 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC------------------------------
Confidence            467899999999999999999888643 58999999871         00                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhhhhhhcCCc-----hHHHHHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTKWIHLNWGD-----DGLITLF  206 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~~~~l~~~~-----~~~~~~l  206 (290)
                                          + .++.+.++|+.+..       +...++||+|+|....+|.....-+     .....++
T Consensus        90 --------------------~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L  148 (209)
T PRK11188         90 --------------------I-VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELAL  148 (209)
T ss_pred             --------------------C-CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHH
Confidence                                1 13678888887621       1345789999997665542210000     0125789


Q ss_pred             HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHH--cCCeeeEeccC
Q 047406          207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDK--IGFRTVEDIGS  271 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~Gf~~v~~~~~  271 (290)
                      +.+.++|+|||.|++..                        +..+.+.+ ++..  ..|..++++.+
T Consensus       149 ~~~~~~LkpGG~~vi~~------------------------~~~~~~~~-~l~~l~~~f~~v~~~Kp  190 (209)
T PRK11188        149 DMCRDVLAPGGSFVVKV------------------------FQGEGFDE-YLREIRSLFTKVKVRKP  190 (209)
T ss_pred             HHHHHHcCCCCEEEEEE------------------------ecCcCHHH-HHHHHHhCceEEEEECC
Confidence            99999999999999953                        22333444 3343  58999998877

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.21  E-value=1.3e-10  Score=103.71  Aligned_cols=103  Identities=22%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||||||+|..+..+++..+. .+|+++|+++++++.|++++..                              
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------------------------  123 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------------------------  123 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            358899999999999999998887543 5899999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ .++.+...|....+ .+..+||+|++....+            .+...+.+.|+|||.
T Consensus       124 ------------------~g~-~~v~~~~gd~~~~~-~~~~~fD~I~~~~~~~------------~~~~~l~~~LkpgG~  171 (212)
T PRK13942        124 ------------------LGY-DNVEVIVGDGTLGY-EENAPYDRIYVTAAGP------------DIPKPLIEQLKDGGI  171 (212)
T ss_pred             ------------------cCC-CCeEEEECCcccCC-CcCCCcCEEEECCCcc------------cchHHHHHhhCCCcE
Confidence                              222 35889999986643 3457899999866542            223467778999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++...
T Consensus       172 lvi~~~  177 (212)
T PRK13942        172 MVIPVG  177 (212)
T ss_pred             EEEEEc
Confidence            999644

>PRK14967 putative methyltransferase; Provisional

Probab=99.20  E-value=3.2e-10  Score=101.55  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=82.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++.++..                               
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~-------------------------------   81 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALL-------------------------------   81 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            356789999999999999998875 445899999999999999988765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh----------hcC-----CchHHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH----------LNW-----GDDGLIT  204 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~----------l~~-----~~~~~~~  204 (290)
                                       .++  .+.+...|+.+.  .+.+.||+|+|+.-....+          ..|     +...+..
T Consensus        82 -----------------~~~--~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (223)
T PRK14967         82 -----------------AGV--DVDVRRGDWARA--VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDR  140 (223)
T ss_pred             -----------------hCC--eeEEEECchhhh--ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHH
Confidence                             222  366777887653  2457899999963211000          000     1123567


Q ss_pred             HHHHHHhhcCCCcEEEEeeCCC
Q 047406          205 LFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      +++++.++|+|||++++.....
T Consensus       141 ~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        141 LCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             HHHHHHHhcCCCcEEEEEEecc
Confidence            8899999999999999965443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.1e-10  Score=108.91  Aligned_cols=109  Identities=18%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +.+|||+|||.|.+++.+++..|..+++.+|+|..+++.|+.++..                                  
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----------------------------------  204 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----------------------------------  204 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----------------------------------
Confidence            4499999999999999999999988999999999999999999876                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    +++... .+...|..+.   ..++||+|+|+.-+|- ...-...-..+++....+.|++||.|.+.
T Consensus       205 --------------N~~~~~-~v~~s~~~~~---v~~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         205 --------------NGVENT-EVWASNLYEP---VEGKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             --------------cCCCcc-EEEEeccccc---ccccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence                          333322 5666665543   2349999999887651 00001122358999999999999999997


Q ss_pred             eC
Q 047406          223 PQ  224 (290)
Q Consensus       223 ~~  224 (290)
                      ..
T Consensus       266 an  267 (300)
T COG2813         266 AN  267 (300)
T ss_pred             Ec
Confidence            65

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.19  E-value=3.3e-10  Score=103.83  Aligned_cols=142  Identities=19%  Similarity=0.249  Sum_probs=93.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ...++||||.|.|.++..++..+.  +|+++|+|+.|....++.                                    
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------------------------------------  135 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------------------------------------  135 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------------------------------------
Confidence            346899999999999999998765  799999999986554441                                    


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                      +    ......+-   +...+.+||+|.|.++|..+      +.+..+|+++++.|+|+|++++
T Consensus       136 ----------------g----~~vl~~~~---w~~~~~~fDvIscLNvLDRc------~~P~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  136 ----------------G----FTVLDIDD---WQQTDFKFDVISCLNVLDRC------DRPLTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             ----------------C----CeEEehhh---hhccCCceEEEeehhhhhcc------CCHHHHHHHHHHHhCCCCEEEE
Confidence                            1    11222111   12234689999999999877      5789999999999999999999


Q ss_pred             e-eCCCchhhhhhh-----hhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 E-PQPWVSYEKNRR-----VSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      . .-||..|-+...     ..+.+.-.-....-.-..+. ..++.+||+++.....
T Consensus       187 AvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~tr~  241 (265)
T PF05219_consen  187 AVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERWTRL  241 (265)
T ss_pred             EEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEEecc
Confidence            3 344544433221     11111100000011112344 3788999999887654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.18  E-value=4e-10  Score=84.54  Aligned_cols=103  Identities=22%  Similarity=0.356  Sum_probs=80.7

Q ss_pred             cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406           65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE  144 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (290)
                      +++|+|||+|..+..++. .+..+++++|+++.++..++.....                                    
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------   43 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA------------------------------------   43 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc------------------------------------
Confidence            589999999999999887 4567999999999999988752211                                    


Q ss_pred             HHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          145 KKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                   .....+.+...|+.+.......+||+|++..++++.     ......+++.+.+.|+|+|.+++.
T Consensus        44 -------------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-----~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          44 -------------LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-----VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -------------ccccceEEEEcChhhhccccCCceEEEEEccceeeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                         122357788888876432245789999999887542     357789999999999999999985

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03438 probable methyltransferase

Probab=99.17  E-value=2.9e-10  Score=106.66  Aligned_cols=112  Identities=17%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+.++.+|||+|||+|..+..+++..+ ..+++++|+|+++++.|..++...                            
T Consensus        60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~----------------------------  111 (301)
T TIGR03438        60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD----------------------------  111 (301)
T ss_pred             hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh----------------------------
Confidence            345778999999999999999988765 468999999999999998876541                            


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC----ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK----YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~----~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                          .....+.+.++|+.+..+.+..    ...++++...+.++    ..+....+|+++.+.|
T Consensus       112 --------------------~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~----~~~e~~~~L~~i~~~L  167 (301)
T TIGR03438       112 --------------------YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF----TPEEAVAFLRRIRQLL  167 (301)
T ss_pred             --------------------CCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC----CHHHHHHHHHHHHHhc
Confidence                                0112467788888764322222    22334434455433    3567889999999999


Q ss_pred             CCCcEEEEe
Q 047406          214 RPGGIFVLE  222 (290)
Q Consensus       214 kpgG~l~i~  222 (290)
                      +|||.|++.
T Consensus       168 ~pgG~~lig  176 (301)
T TIGR03438       168 GPGGGLLIG  176 (301)
T ss_pred             CCCCEEEEe
Confidence            999999983

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.16  E-value=1.4e-10  Score=106.98  Aligned_cols=96  Identities=22%  Similarity=0.325  Sum_probs=74.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC---ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC---RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~---~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ...+|||+|||+|.++..+++..+.   ..++|+|+|+.+++.|.+..                                
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------------------------------  132 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------------------------------  132 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------------------------------
Confidence            4478999999999999999887653   37899999999999986531                                


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                            ..+.+...|..+ ++.++++||+|++....             ..+.++.++|+|||+
T Consensus       133 ----------------------~~~~~~~~d~~~-lp~~~~sfD~I~~~~~~-------------~~~~e~~rvLkpgG~  176 (272)
T PRK11088        133 ----------------------PQVTFCVASSHR-LPFADQSLDAIIRIYAP-------------CKAEELARVVKPGGI  176 (272)
T ss_pred             ----------------------CCCeEEEeeccc-CCCcCCceeEEEEecCC-------------CCHHHHHhhccCCCE
Confidence                                  136677778765 56677899999985432             135788999999999


Q ss_pred             EEEeeCC
Q 047406          219 FVLEPQP  225 (290)
Q Consensus       219 l~i~~~~  225 (290)
                      +++..+.
T Consensus       177 li~~~p~  183 (272)
T PRK11088        177 VITVTPG  183 (272)
T ss_pred             EEEEeCC
Confidence            9997653

>PTZ00146 fibrillarin; Provisional

Probab=99.16  E-value=9e-10  Score=103.04  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..++...+ ...|+++|+++.+++........                              
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------------------------------  179 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------------------------------  179 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------------------------
Confidence            46889999999999999999998864 34899999998776555543221                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           ..++.+...|....  +..+...+|+|++....        .++...++.++.+.|+||
T Consensus       180 ---------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~--------pdq~~il~~na~r~LKpG  230 (293)
T PTZ00146        180 ---------------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ--------PDQARIVALNAQYFLKNG  230 (293)
T ss_pred             ---------------------cCCCEEEECCccChhhhhcccCCCCEEEEeCCC--------cchHHHHHHHHHHhccCC
Confidence                                 12466777776542  12233579999986532        234556677899999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhH----HHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEF----QEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ll~~~Gf~~v~~~~~  271 (290)
                      |.|++... +.+               ......+++.    .+ .|+++||+.++.+..
T Consensus       231 G~~vI~ik-a~~---------------id~g~~pe~~f~~ev~-~L~~~GF~~~e~v~L  272 (293)
T PTZ00146        231 GHFIISIK-ANC---------------IDSTAKPEVVFASEVQ-KLKKEGLKPKEQLTL  272 (293)
T ss_pred             CEEEEEEe-ccc---------------cccCCCHHHHHHHHHH-HHHHcCCceEEEEec
Confidence            99999421 111               1112222332    23 689999999888776

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=2.8e-10  Score=101.15  Aligned_cols=150  Identities=17%  Similarity=0.158  Sum_probs=101.8

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..+|++|||+|..-...-. -|..+|+++|.++.+-+.+.+.++.                                   
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E-----------------------------------  121 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAE-----------------------------------  121 (252)
T ss_pred             cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhh-----------------------------------
Confidence            4689999999987444222 2456999999999999999887654                                   


Q ss_pred             HHHhhhcCCCccccCcCccee-EeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          144 EKKAISRNCSPAERNLFDIVS-FKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                   . -+..+. |...+..+.-+.+++++|.|+|..++  |+.    +++.+.|.++.++|+|||++++-
T Consensus       122 -------------~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL--CSv----e~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  122 -------------K-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL--CSV----EDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             -------------c-cCcceEEEEeechhcCcccccCCeeeEEEEEEE--ecc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence                         1 112344 67777666333578999999999998  443    68899999999999999999994


Q ss_pred             eCCCchhhhhhhhhhh-----hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQPWVSYEKNRRVSET-----TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .+.-..|....+....     +....++..++.+...  +|+.+-|+.++....
T Consensus       182 EHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e--~Leda~f~~~~~kr~  233 (252)
T KOG4300|consen  182 EHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGE--LLEDAEFSIDSCKRF  233 (252)
T ss_pred             ecccccchHHHHHHHHHhchhhheeccceEEehhHHH--Hhhhcccccchhhcc
Confidence            4333233332222222     2223344456666554  578899987766544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.13  E-value=9.8e-11  Score=105.44  Aligned_cols=139  Identities=21%  Similarity=0.341  Sum_probs=94.6

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .++||+|||+|..+..+-..  ...++|+|||++|++.|...-                                     
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg-------------------------------------  167 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKG-------------------------------------  167 (287)
T ss_pred             ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhcc-------------------------------------
Confidence            69999999999988887655  448999999999999987621                                     


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                     +.+.+  .+.+....++ ....+||+|..-.|+.|+      -.++.++--+..+|+|||.|.|+
T Consensus       168 ---------------~YD~L--~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl------G~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         168 ---------------LYDTL--YVAEAVLFLEDLTQERFDLIVAADVLPYL------GALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             ---------------chHHH--HHHHHHHHhhhccCCcccchhhhhHHHhh------cchhhHHHHHHHhcCCCceEEEE
Confidence                           11100  1111111111 234789999999999777      36889999999999999999996


Q ss_pred             eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .-.......   +.......|    -.++.+++.++...||+++++-..
T Consensus       225 vE~l~~~~~---f~l~ps~Ry----AH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         225 VETLPDDGG---FVLGPSQRY----AHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             ecccCCCCC---eecchhhhh----ccchHHHHHHHHhcCceEEEeecc
Confidence            432111100   111111112    356888888999999999887543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.12  E-value=6.6e-10  Score=99.96  Aligned_cols=118  Identities=13%  Similarity=0.090  Sum_probs=81.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||.|..+..||++  +.+|+|+|+|+.+++.+......       ....                   . 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l-------~~~~-------------------~-   86 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGL-------TPQT-------------------R-   86 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCC-------Cccc-------------------c-
Confidence            46789999999999999999986  56899999999999986431100       0000                   0 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                ............+.+.+.|+.+..+...+.||+|+-..+++.+    ..+.....+..+.++|+|||+++
T Consensus        87 ----------~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255         87 ----------QSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             ----------ccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEE
Confidence                      0000001113468899999987432233689999998887433    24566899999999999999755


Q ss_pred             E
Q 047406          221 L  221 (290)
Q Consensus       221 i  221 (290)
                      +
T Consensus       153 l  153 (218)
T PRK13255        153 L  153 (218)
T ss_pred             E
Confidence            5

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.12  E-value=1.5e-09  Score=112.73  Aligned_cols=147  Identities=18%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..+.++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+.|+..                             
T Consensus       534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~-----------------------------  583 (702)
T PRK11783        534 GQMAKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFAL-----------------------------  583 (702)
T ss_pred             HHhcCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence            34457899999999999999998874 555899999999999999999876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCCCCCCceeEEEEchhhh----hh-hhcCCchHHHHHHHHHHh
Q 047406          138 VTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDSPEKYYDAILCLSVTK----WI-HLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~----~~-~l~~~~~~~~~~l~~~~~  211 (290)
                                         +++. ..+.+.+.|..+.+.....+||+|++..-.-    .. ...-...+...++..+.+
T Consensus       584 -------------------ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~  644 (702)
T PRK11783        584 -------------------NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR  644 (702)
T ss_pred             -------------------hCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence                               3443 4688999997653222246899999953210    00 000012455788999999


Q ss_pred             hcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCC
Q 047406          212 LLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSS  276 (290)
Q Consensus       212 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~  276 (290)
                      +|+|||+++++...                  .+  +.   ....++.++||.+..+...+.++.
T Consensus       645 lL~~gG~l~~~~~~------------------~~--~~---~~~~~~~~~g~~~~~i~~~~~~~D  686 (702)
T PRK11783        645 LLRPGGTLYFSNNK------------------RG--FK---MDEEGLAKLGLKAEEITAKTLPPD  686 (702)
T ss_pred             HcCCCCEEEEEeCC------------------cc--CC---hhHHHHHhCCCeEEEEecCCCCCC
Confidence            99999999986431                  11  11   113367889999777765544433

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.11  E-value=4.7e-10  Score=100.54  Aligned_cols=105  Identities=21%  Similarity=0.338  Sum_probs=83.1

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ..-|||||||+|..+..+...  .-.++|+|||+.|++.|...  .                                  
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~--e----------------------------------   92 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER--E----------------------------------   92 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh--h----------------------------------
Confidence            567999999999988887654  45789999999999999872  1                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC-----CchHHHHHHHHHHhhcCCCc
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW-----GDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~-----~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      +  .-++..+|+-+.+|+.++.||-+++...+||+-...     ...-+..+|..++.+|++|+
T Consensus        93 ----------------~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~  154 (270)
T KOG1541|consen   93 ----------------L--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGA  154 (270)
T ss_pred             ----------------h--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCc
Confidence                            0  034677777788999999999999999999963221     22334678889999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      ..+++.
T Consensus       155 raV~Qf  160 (270)
T KOG1541|consen  155 RAVLQF  160 (270)
T ss_pred             eeEEEe
Confidence            999974

>PHA03411 putative methyltransferase; Provisional

Probab=99.11  E-value=2e-09  Score=99.91  Aligned_cols=135  Identities=10%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||+|||+|.++..++.+.+..+|+++|+|+.+++.++.+.                                  
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------------------------------  108 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------------------------------  108 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------------------------------
Confidence            3457999999999999998888765679999999999999887642                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhh---------hhcCCc---hH--HHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWI---------HLNWGD---DG--LITLF  206 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~---------~l~~~~---~~--~~~~l  206 (290)
                                          ..+.+...|+.+. . ....||+|+++.-..+.         ....+.   +.  +..++
T Consensus       109 --------------------~~v~~v~~D~~e~-~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l  166 (279)
T PHA03411        109 --------------------PEAEWITSDVFEF-E-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKF  166 (279)
T ss_pred             --------------------cCCEEEECchhhh-c-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHH
Confidence                                1367788888763 2 24689999996554321         111111   11  35677


Q ss_pred             HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406          207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      .....+|+|+|.+++.-.      .         ..+-|..+.++++.. +++.+||....
T Consensus       167 ~~v~~~L~p~G~~~~~ys------s---------~~~y~~sl~~~~y~~-~l~~~g~~~~~  211 (279)
T PHA03411        167 ADVGYFIVPTGSAGFAYS------G---------RPYYDGTMKSNKYLK-WSKQTGLVTYA  211 (279)
T ss_pred             hhhHheecCCceEEEEEe------c---------cccccccCCHHHHHH-HHHhcCcEecC
Confidence            888889999997777311      1         112244577888877 89999997543

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.11  E-value=2e-10  Score=104.04  Aligned_cols=100  Identities=17%  Similarity=0.321  Sum_probs=73.2

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..+||+|||+|..++.+|..+.  +|+|+|+|+.+|+.|+++-..                                   
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~-----------------------------------   77 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPV-----------------------------------   77 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCc-----------------------------------
Confidence            3899999999988787777754  899999999999998875221                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc-EEEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG-IFVL  221 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG-~l~i  221 (290)
                                   ........+...+..+ +-.++.+.|+|+|...+||+.       +.++++++.++|+++| ++++
T Consensus        78 -------------~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~Aqa~HWFd-------le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   78 -------------TYCHTPSTMSSDEMVD-LLGGEESVDLITAAQAVHWFD-------LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             -------------ccccCCcccccccccc-ccCCCcceeeehhhhhHHhhc-------hHHHHHHHHHHcCCCCCEEEE
Confidence                         1111112222223322 233478999999999999994       6899999999999877 6555

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.09  E-value=7.9e-10  Score=100.36  Aligned_cols=110  Identities=21%  Similarity=0.355  Sum_probs=86.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..++.++...+ ..+|+++|+++++++.|++++..                               
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-------------------------------  115 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-------------------------------  115 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5678999999999998888887654 46999999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++.+.+.+..+|..+.++.     +.++||+|++-         ..++....++..+.++|+
T Consensus       116 -----------------~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiD---------a~k~~y~~~~~~~~~ll~  169 (234)
T PLN02781        116 -----------------AGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVD---------ADKPNYVHFHEQLLKLVK  169 (234)
T ss_pred             -----------------cCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEEC---------CCHHHHHHHHHHHHHhcC
Confidence                             44555688999888763221     24689999963         223556788999999999


Q ss_pred             CCcEEEEeeCCCc
Q 047406          215 PGGIFVLEPQPWV  227 (290)
Q Consensus       215 pgG~l~i~~~~~~  227 (290)
                      |||++++...-|.
T Consensus       170 ~GG~ii~dn~l~~  182 (234)
T PLN02781        170 VGGIIAFDNTLWF  182 (234)
T ss_pred             CCeEEEEEcCCcC
Confidence            9999998655453

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.09  E-value=9.2e-10  Score=106.71  Aligned_cols=111  Identities=17%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+..+||||||+|.++..+|+..|...++|+|+++.+++.|...+..                                 
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~---------------------------------  168 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL---------------------------------  168 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            45799999999999999999999988999999999999999887654                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCch---HHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDD---GLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~---~~~~~l~~~~~~LkpgG  217 (290)
                                     .++ .++.+.+.|.... ...+++.+|.|++++...|..   ..+   ....++..+.++|+|||
T Consensus       169 ---------------~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~K---krHRRlv~~~fL~e~~RvLkpGG  229 (390)
T PRK14121        169 ---------------LNL-KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDK---KPHRRVISEDFLNEALRVLKPGG  229 (390)
T ss_pred             ---------------cCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccc---cchhhccHHHHHHHHHHHcCCCc
Confidence                           333 3588888887542 134678999999876554421   000   12578999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .+.+.+.
T Consensus       230 ~l~l~TD  236 (390)
T PRK14121        230 TLELRTD  236 (390)
T ss_pred             EEEEEEE
Confidence            9999664

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.08  E-value=1.7e-09  Score=95.98  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..++...  .+++++|+++.+++.|++++..                                
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~--------------------------------  122 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQ--------------------------------  122 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            577899999999999998887764  3899999999999999988765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++. ++.+...|..+..+ ..++||+|++....++            +...+.+.|+|||.++
T Consensus       123 ----------------~~~~-~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~------------~~~~l~~~L~~gG~lv  172 (212)
T PRK00312        123 ----------------LGLH-NVSVRHGDGWKGWP-AYAPFDRILVTAAAPE------------IPRALLEQLKEGGILV  172 (212)
T ss_pred             ----------------CCCC-ceEEEECCcccCCC-cCCCcCEEEEccCchh------------hhHHHHHhcCCCcEEE
Confidence                            2222 37888888765332 3478999999765532            2356788999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       173 ~~~~  176 (212)
T PRK00312        173 APVG  176 (212)
T ss_pred             EEEc
Confidence            9654

>PRK04457 spermidine synthase; Provisional

Probab=99.07  E-value=4.4e-10  Score=103.70  Aligned_cols=112  Identities=16%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++..+|..+|+++|+++.+++.|+.++..                                
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------------------------------  112 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------------------------------  112 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------------------------------
Confidence            456899999999999999999988888999999999999999986532                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+...++.+...|..+.......+||+|++...-. .... ..-....++.++.++|+|||+++
T Consensus       113 ----------------~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~-~~~~-~~l~t~efl~~~~~~L~pgGvlv  174 (262)
T PRK04457        113 ----------------PENGERFEVIEADGAEYIAVHRHSTDVILVDGFDG-EGII-DALCTQPFFDDCRNALSSDGIFV  174 (262)
T ss_pred             ----------------CCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCC-CCCc-cccCcHHHHHHHHHhcCCCcEEE
Confidence                            22234688888887654333346899999742100 0000 00112689999999999999999


Q ss_pred             Ee
Q 047406          221 LE  222 (290)
Q Consensus       221 i~  222 (290)
                      +.
T Consensus       175 in  176 (262)
T PRK04457        175 VN  176 (262)
T ss_pred             EE
Confidence            95

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.05  E-value=9.7e-10  Score=99.60  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             cEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           65 DCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +||+||||.|....-+.+..+.  ..|+++|.||.+++..+++..-                                  
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~----------------------------------  119 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY----------------------------------  119 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----------------------------------
Confidence            8999999999887777787776  6899999999999998886432                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                    .  ...+.....|+...   .+...+++|.|.+.+++.=+    +.+.+...+.++.++|+|||.+
T Consensus       120 --------------~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi----~pek~~~a~~nl~~llKPGG~l  179 (264)
T KOG2361|consen  120 --------------D--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI----HPEKMQSVIKNLRTLLKPGGSL  179 (264)
T ss_pred             --------------c--hhhhcccceeccchhccCCCCcCccceEEEEEEEecc----ChHHHHHHHHHHHHHhCCCcEE
Confidence                          0  01222233333321   23456899999999998433    4578899999999999999999


Q ss_pred             EEeeCCCchhhhhh-----hhhhhhhcccc--ccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNR-----RVSETTATNFQ--NIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..-..-...+.+     .+.+...-.-+  ...+.+++..+.++.++||..++....
T Consensus       180 lfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~  238 (264)
T KOG2361|consen  180 LFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD  238 (264)
T ss_pred             EEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence            99532111111111     11111111112  224666777777999999998876544

>PRK00811 spermidine synthase; Provisional

Probab=99.04  E-value=1.7e-09  Score=100.82  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +.+.+||+||||+|..+..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~------------------------------  124 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA------------------------------  124 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc------------------------------
Confidence            45689999999999999998876556699999999999999999765410                              


Q ss_pred             HHHHHHhhhcCCCccccCc--CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNL--FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg  216 (290)
                                      .+.  ..++.+...|....+....++||+|++-..-.+.    ....  ...++..+.+.|+||
T Consensus       125 ----------------~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~----~~~~l~t~ef~~~~~~~L~~g  184 (283)
T PRK00811        125 ----------------GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVG----PAEGLFTKEFYENCKRALKED  184 (283)
T ss_pred             ----------------cccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCC----chhhhhHHHHHHHHHHhcCCC
Confidence                            111  2358888888776443456789999985432211    1112  267889999999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      |++++...
T Consensus       185 Gvlv~~~~  192 (283)
T PRK00811        185 GIFVAQSG  192 (283)
T ss_pred             cEEEEeCC
Confidence            99999643

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.04  E-value=1.2e-09  Score=97.99  Aligned_cols=147  Identities=17%  Similarity=0.140  Sum_probs=94.1

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      -.++||.|+|-|+++..+.... ...|-.+|.++.-++.|+..+..                                  
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~----------------------------------  100 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGK----------------------------------  100 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC----------------------------------
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcc----------------------------------
Confidence            4689999999999998775544 34899999999999999875321                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                     +......+.+..+.+.. ...+.||+|+|-+++-|+    .++++..+|.++...|+|+|++++-
T Consensus       101 ---------------~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL----TD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  101 ---------------DNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL----TDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ---------------GGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS-----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------cCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC----CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence                           11223556666655432 234799999998777433    5899999999999999999999994


Q ss_pred             eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ...-.       ........-++.-.++++....++++||+++++...+
T Consensus       161 EN~~~-------~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  161 ENVSS-------SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             EEEES-------SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             ecCCC-------CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence            32100       0001112223333445555555999999999998877

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=1.3e-09  Score=98.37  Aligned_cols=99  Identities=23%  Similarity=0.361  Sum_probs=82.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+..+|+|||+|+|.++..+++.+|..+++..|+ |.+++.++.                                    
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------------------------------  141 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------------------------------  141 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------------------------------------
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------------------------------------
Confidence            4557899999999999999999999999999999 888877765                                    


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC--cE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG--GI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg--G~  218 (290)
                                         .+++.+..+|+.+  +.|.  +|+|+..+++|    +|++++...+|+++.+.|+||  |.
T Consensus       142 -------------------~~rv~~~~gd~f~--~~P~--~D~~~l~~vLh----~~~d~~~~~iL~~~~~al~pg~~g~  194 (241)
T PF00891_consen  142 -------------------ADRVEFVPGDFFD--PLPV--ADVYLLRHVLH----DWSDEDCVKILRNAAAALKPGKDGR  194 (241)
T ss_dssp             -------------------TTTEEEEES-TTT--CCSS--ESEEEEESSGG----GS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred             -------------------ccccccccccHHh--hhcc--ccceeeehhhh----hcchHHHHHHHHHHHHHhCCCCCCe
Confidence                               1369999999985  3343  99999999986    577899999999999999999  99


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      |+|..
T Consensus       195 llI~e  199 (241)
T PF00891_consen  195 LLIIE  199 (241)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99954

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.02  E-value=2.7e-09  Score=101.73  Aligned_cols=122  Identities=16%  Similarity=0.318  Sum_probs=80.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||-|.-..-.... ....++|+||++.+++.|+..........+.                          
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~--------------------------  114 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNS--------------------------  114 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT---------------------------
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhcccccc--------------------------
Confidence            7899999999999876666553 3458999999999999999987442110000                          


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                   ..........|...|....     .+....+||+|.|-+.+||..-  ..+..+.+|.++..+|+||
T Consensus       115 -------------~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~G  179 (331)
T PF03291_consen  115 -------------KQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPG  179 (331)
T ss_dssp             -------------HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEE
T ss_pred             -------------ccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCC
Confidence                         0011122355666665432     2222369999999999987632  4555678999999999999


Q ss_pred             cEEEEeeCC
Q 047406          217 GIFVLEPQP  225 (290)
Q Consensus       217 G~l~i~~~~  225 (290)
                      |+++...+.
T Consensus       180 G~FIgT~~d  188 (331)
T PF03291_consen  180 GYFIGTTPD  188 (331)
T ss_dssp             EEEEEEEE-
T ss_pred             CEEEEEecC
Confidence            999996653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.01  E-value=7.8e-09  Score=96.19  Aligned_cols=157  Identities=18%  Similarity=0.240  Sum_probs=115.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...+||||.||.|....-.....+.  .+|...|+|+..++..++.+..                               
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-------------------------------  183 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-------------------------------  183 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            4579999999999988887777775  6999999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       .++.+.+.|.+.|..+.  +......+++++.+.+...+.   +.+-....+..+.+++.|||
T Consensus       184 -----------------~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~---Dn~lv~~sl~gl~~al~pgG  243 (311)
T PF12147_consen  184 -----------------RGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFP---DNDLVRRSLAGLARALEPGG  243 (311)
T ss_pred             -----------------cCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCC---cHHHHHHHHHHHHHHhCCCc
Confidence                             66767679999998874  223345679999988875442   33445778999999999999


Q ss_pred             EEEEeeCCCchhhh--hhhhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          218 IFVLEPQPWVSYEK--NRRVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       218 ~l~i~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +++...+||..-.+  ++.++..-. ..| .++..++.....|++.+||+.++...
T Consensus       244 ~lIyTgQPwHPQle~IAr~LtsHr~g~~W-vMRrRsq~EmD~Lv~~aGF~K~~q~I  298 (311)
T PF12147_consen  244 YLIYTGQPWHPQLEMIARVLTSHRDGKAW-VMRRRSQAEMDQLVEAAGFEKIDQRI  298 (311)
T ss_pred             EEEEcCCCCCcchHHHHHHHhcccCCCce-EEEecCHHHHHHHHHHcCCchhhhee
Confidence            99999999977554  222222111 122 23445555556699999999665433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=1.3e-08  Score=93.89  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=104.9

Q ss_pred             HHHHhhhcCCCcccccccccccccccc--CCCCCc-----hhhHHhh-----hhccCCCcEEEecCCCChhhHHHHhHcC
Q 047406           18 AQQLKKRKGKDVFPFGNYKNYYGYRIG--QGLNED-----PRFKVLK-----KEWFEGKDCLDIGCNSGIITIQIAQKFN   85 (290)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~l~~l~-----~~~~~~~~vLDiGcG~G~~~~~la~~~~   85 (290)
                      ....|.++-..+|++| ...|-+..+.  +++...     ++.+.+.     .++..+..+||+|||+|+++..++...+
T Consensus        93 ~~~~R~~r~PlQYIlg-~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~  171 (328)
T KOG2904|consen   93 ACLQRYKRMPLQYILG-SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP  171 (328)
T ss_pred             HHHHHHhcCChhheec-cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC
Confidence            3344555556899999 3455443321  222111     1122222     2335566899999999999999999888


Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeE
Q 047406           86 CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSF  165 (290)
Q Consensus        86 ~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  165 (290)
                      ...|+++|.|+.++..|.+|+.+                                                ..+...+.+
T Consensus       172 ~~~v~AiD~S~~Ai~La~eN~qr------------------------------------------------~~l~g~i~v  203 (328)
T KOG2904|consen  172 QCTVTAIDVSKAAIKLAKENAQR------------------------------------------------LKLSGRIEV  203 (328)
T ss_pred             CceEEEEeccHHHHHHHHHHHHH------------------------------------------------HhhcCceEE
Confidence            88999999999999999999877                                                334445555


Q ss_pred             e----ecccccCCCCCCCceeEEEEchhh---------h--------hhhhcCCchHH---HHHHHHHHhhcCCCcEEEE
Q 047406          166 K----QENFVHGRDSPEKYYDAILCLSVT---------K--------WIHLNWGDDGL---ITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       166 ~----~~d~~~~~~~~~~~fD~I~~~~vl---------~--------~~~l~~~~~~~---~~~l~~~~~~LkpgG~l~i  221 (290)
                      .    ..|.....+...+++|+++|+.-.         +        -..|+++.++.   ..++.-..+.|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            5    334433344566899999995211         0        13445544444   5677778899999999999


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      +..
T Consensus       284 e~~  286 (328)
T KOG2904|consen  284 ELV  286 (328)
T ss_pred             Eec
Confidence            754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.98  E-value=6.4e-09  Score=102.03  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||+|||+|..+..+++..+..+|+++|+++.+++.++.++..                                
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r--------------------------------  284 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKR--------------------------------  284 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            478999999999999999999887766999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEc------hhhhhh-hhc--CCc-------hHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCL------SVTKWI-HLN--WGD-------DGLI  203 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~------~vl~~~-~l~--~~~-------~~~~  203 (290)
                                      .++...+.+.+.|...... .+..+||.|++-      .+++.. .+-  +..       ..+.
T Consensus       285 ----------------~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~  348 (426)
T TIGR00563       285 ----------------LGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS  348 (426)
T ss_pred             ----------------cCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence                            2222224445555443111 134679999962      222100 000  111       1257


Q ss_pred             HHHHHHHhhcCCCcEEEEeeCCC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      .+|..++++|+|||.|++++-.+
T Consensus       349 ~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       349 EILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCC
Confidence            89999999999999999976533

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=9.4e-09  Score=101.32  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..++... +...|+++|+++.+++.++.++..                               
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-------------------------------  297 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR-------------------------------  297 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            567899999999999999999876 456899999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh-------hhhh--cCCch-------HHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK-------WIHL--NWGDD-------GLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~-------~~~l--~~~~~-------~~~  203 (290)
                                       .++. ++.+...|+.+......+.||+|++..-..       +-..  .+...       .+.
T Consensus       298 -----------------~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~  359 (444)
T PRK14902        298 -----------------LGLT-NIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL  359 (444)
T ss_pred             -----------------cCCC-eEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence                             3333 388888888653211126799999742110       0000  01111       235


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .++..++++|+|||.++.++-
T Consensus       360 ~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        360 EILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             HHHHHHHHHcCCCCEEEEEcC
Confidence            789999999999999998653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.98  E-value=1.1e-08  Score=94.20  Aligned_cols=115  Identities=19%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .+|.+|||+|||+|..+..+++.++. ..|+++|+++.+++.++.++..                               
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-------------------------------  118 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-------------------------------  118 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-------------------------------
Confidence            57899999999999999999887753 4899999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch------hhhh---hhhcCCc-------hHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS------VTKW---IHLNWGD-------DGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~------vl~~---~~l~~~~-------~~~~  203 (290)
                                       .++ .++.+...|... .+...+.||.|++..      ++..   ....|..       ..+.
T Consensus       119 -----------------~g~-~~v~~~~~D~~~-~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~  179 (264)
T TIGR00446       119 -----------------CGV-LNVAVTNFDGRV-FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK  179 (264)
T ss_pred             -----------------cCC-CcEEEecCCHHH-hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence                             223 247777777654 222345699999731      1100   0001111       2346


Q ss_pred             HHHHHHHhhcCCCcEEEEeeCC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      .+|..++++|+|||+|+.++-.
T Consensus       180 ~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       180 ELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHHHHHHhcCCCCEEEEEeCC
Confidence            7999999999999999997653

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.97  E-value=7.3e-09  Score=102.11  Aligned_cols=103  Identities=22%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.+|...  .+|+|+|+|+.+++.|+.++..                                
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~--------------------------------  341 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR--------------------------------  341 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999999998874  5899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      .++ .++.+...|+.+...   .....||+|++..--         .+...++..+.+ ++|++
T Consensus       342 ----------------~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr---------~g~~~~~~~l~~-~~~~~  394 (443)
T PRK13168        342 ----------------NGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR---------AGAAEVMQALAK-LGPKR  394 (443)
T ss_pred             ----------------cCC-CceEEEEeChHHhhhhhhhhcCCCCEEEECcCC---------cChHHHHHHHHh-cCCCe
Confidence                            233 248899998865321   234579999974332         223455555555 68999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++++.
T Consensus       395 ivyvSCn  401 (443)
T PRK13168        395 IVYVSCN  401 (443)
T ss_pred             EEEEEeC
Confidence            9999865

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.97  E-value=3.9e-09  Score=90.16  Aligned_cols=55  Identities=9%  Similarity=0.183  Sum_probs=47.6

Q ss_pred             cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          161 DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                      .++++.++|..+ ++.++++||+|++..+++|+      .+...++++++++|+|||.+++.
T Consensus        26 ~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~------~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232         26 KCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNV------VDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CceEEEEechhh-CCCCCCCeeEEEecchhhcC------CCHHHHHHHHHHHcCcCeEEEEE
Confidence            358999999876 67778899999999999766      46789999999999999999874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.3e-09  Score=92.88  Aligned_cols=101  Identities=21%  Similarity=0.280  Sum_probs=80.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|..+..||+...  +|+.+|..+...+.|++++..                               
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~-------------------------------  116 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLET-------------------------------  116 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHH-------------------------------
Confidence            36899999999999999999998744  999999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++. ++.+.+.|....++. ..+||.|++.....        .-+    ..+...|+|||++
T Consensus       117 -----------------lg~~-nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa~--------~vP----~~Ll~QL~~gGrl  165 (209)
T COG2518         117 -----------------LGYE-NVTVRHGDGSKGWPE-EAPYDRIIVTAAAP--------EVP----EALLDQLKPGGRL  165 (209)
T ss_pred             -----------------cCCC-ceEEEECCcccCCCC-CCCcCEEEEeeccC--------CCC----HHHHHhcccCCEE
Confidence                             3443 399999999886543 48999999865542        112    3456677999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++-.+
T Consensus       166 v~PvG  170 (209)
T COG2518         166 VIPVG  170 (209)
T ss_pred             EEEEc
Confidence            99554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=1.3e-08  Score=100.04  Aligned_cols=111  Identities=21%  Similarity=0.307  Sum_probs=82.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||+|||+|..+..++...+..+|+++|+|+.+++.++.++..                                
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~--------------------------------  290 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR--------------------------------  290 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            578999999999999999999887656899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchh------------hhhhhhcCCc-------h
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSV------------TKWIHLNWGD-------D  200 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~v------------l~~~~l~~~~-------~  200 (290)
                                      .++  .+.+...|..+... ....+||.|++..-            ++|.   +..       .
T Consensus       291 ----------------~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~---~~~~~l~~l~~  349 (427)
T PRK10901        291 ----------------LGL--KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWL---RRPEDIAALAA  349 (427)
T ss_pred             ----------------cCC--CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCcccccc---CCHHHHHHHHH
Confidence                            222  25677777754211 12467999995321            1111   011       2


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          201 GLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+..++..++++|+|||++++++-
T Consensus       350 ~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        350 LQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeC
Confidence            346899999999999999998754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=1.1e-08  Score=100.76  Aligned_cols=119  Identities=20%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..+|.+|||+|||+|..+..++..++ ...|+++|+|+.+++.++.++..                              
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------------------------  284 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------------------------  284 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            35789999999999999999998764 45899999999999999998876                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhh---hhhh------hcCCc-------hHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT---KWIH------LNWGD-------DGL  202 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl---~~~~------l~~~~-------~~~  202 (290)
                                        .++. ++.+...|.........++||.|++-.-+   ..+.      ..+..       ..+
T Consensus       285 ------------------~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q  345 (431)
T PRK14903        285 ------------------LKLS-SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQ  345 (431)
T ss_pred             ------------------cCCC-eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHH
Confidence                              2332 37788888754211234679999972111   0000      00011       235


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeCCCc
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQPWV  227 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~~~~  227 (290)
                      .++|.++++.|+|||++++++-.+.
T Consensus       346 ~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        346 LRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCC
Confidence            7889999999999999999876443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=1.6e-08  Score=99.74  Aligned_cols=111  Identities=22%  Similarity=0.261  Sum_probs=83.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .+|.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++.++..                               
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-------------------------------  297 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA-------------------------------  297 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5788999999999999998887654 34899999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc----h--hh------hhhhhcCCc-------h
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL----S--VT------KWIHLNWGD-------D  200 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~----~--vl------~~~~l~~~~-------~  200 (290)
                                       .++ .++.+...|..+. + +..+||+|++-    .  ++      .|.   +..       .
T Consensus       298 -----------------~g~-~~v~~~~~Da~~~-~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~---~~~~~~~~l~~  354 (445)
T PRK14904        298 -----------------LGI-TIIETIEGDARSF-S-PEEQPDAILLDAPCTGTGVLGRRAELRWK---LTPEKLAELVG  354 (445)
T ss_pred             -----------------hCC-CeEEEEeCccccc-c-cCCCCCEEEEcCCCCCcchhhcCcchhhc---CCHHHHHHHHH
Confidence                             233 2478888887653 2 34689999962    1  11      111   111       2


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          201 GLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      .+..++..++++|+|||++++++-.
T Consensus       355 ~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        355 LQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            3457999999999999999997653

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.94  E-value=4.7e-09  Score=91.46  Aligned_cols=106  Identities=17%  Similarity=0.256  Sum_probs=71.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      ..+.++.+|||+|||+|.++..++..+. ..+|+++|+|+.+         .                            
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~----------------------------   70 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P----------------------------   70 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c----------------------------
Confidence            4457889999999999999999888763 4579999999843         1                            


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhh----hhh-hcCCchHHHH
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTK----WIH-LNWGDDGLIT  204 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~----~~~-l~~~~~~~~~  204 (290)
                                             ...+.+.+.|+.+..       ..+.++||+|+|....+    |.. ..-..+.+..
T Consensus        71 -----------------------~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~  127 (188)
T TIGR00438        71 -----------------------IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVEL  127 (188)
T ss_pred             -----------------------CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHH
Confidence                                   012556666654410       12346799999854321    110 0000123478


Q ss_pred             HHHHHHhhcCCCcEEEEee
Q 047406          205 LFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~  223 (290)
                      ++..+.++|+|||.+++..
T Consensus       128 ~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       128 ALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HHHHHHHHccCCCEEEEEE
Confidence            9999999999999999963

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.94  E-value=9.5e-09  Score=97.65  Aligned_cols=102  Identities=16%  Similarity=0.183  Sum_probs=77.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++..+. ..|+++|+++.+++.|+.++..                              
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------------------------  127 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------------------------  127 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            357789999999999999999987653 3699999999999999988765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ +++.+...|..... ....+||+|++...+.            .+...+.+.|+|||.
T Consensus       128 ------------------~g~-~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g~~------------~ip~~~~~~LkpgG~  175 (322)
T PRK13943        128 ------------------LGI-ENVIFVCGDGYYGV-PEFAPYDVIFVTVGVD------------EVPETWFTQLKEGGR  175 (322)
T ss_pred             ------------------cCC-CcEEEEeCChhhcc-cccCCccEEEECCchH------------HhHHHHHHhcCCCCE
Confidence                              222 34778888876532 2236799999865442            223456788999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       176 Lvv~~  180 (322)
T PRK13943        176 VIVPI  180 (322)
T ss_pred             EEEEe
Confidence            98853

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.91  E-value=1.1e-08  Score=92.19  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...++|||||++.|.-++.||...+ +.+++.+|++++..+.|++++..                               
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-------------------------------  106 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-------------------------------  106 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            5779999999999999999999988 66899999999999999999987                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEee-cccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQ-ENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       .++.+.+.... +|..+.+. ...++||+|+.         +.++..-...+..+.++|+|||
T Consensus       107 -----------------ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI---------DadK~~yp~~le~~~~lLr~GG  160 (219)
T COG4122         107 -----------------AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI---------DADKADYPEYLERALPLLRPGG  160 (219)
T ss_pred             -----------------cCCcceEEEEecCcHHHHHHhccCCCccEEEE---------eCChhhCHHHHHHHHHHhCCCc
Confidence                             34445566666 57666433 34689999994         4456667899999999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      ++++..
T Consensus       161 liv~DN  166 (219)
T COG4122         161 LIVADN  166 (219)
T ss_pred             EEEEee
Confidence            999953

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=2e-08  Score=98.88  Aligned_cols=115  Identities=19%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .+|.+|||+|||+|..+..+++.+++ ..|+++|+++.+++.++.++..                               
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r-------------------------------  299 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR-------------------------------  299 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-------------------------------
Confidence            57899999999999999999987653 5899999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEch------hhhh-hhh--cCCch-------
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLS------VTKW-IHL--NWGDD-------  200 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~------vl~~-~~l--~~~~~-------  200 (290)
                                       .++. ++.+...|..+...   ...+.||.|++..      +++. -..  .+...       
T Consensus       300 -----------------~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~  361 (434)
T PRK14901        300 -----------------LGLK-SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAP  361 (434)
T ss_pred             -----------------cCCC-eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHH
Confidence                             2332 47788888765211   2246899999731      2110 000  01111       


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          201 GLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+.+++.+++++|+|||+++.++-
T Consensus       362 ~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        362 LQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeC
Confidence            257899999999999999998653

>PLN02476 O-methyltransferase

Probab=98.90  E-value=1.3e-08  Score=94.85  Aligned_cols=110  Identities=18%  Similarity=0.306  Sum_probs=87.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...++||||||++|..++.+|...+ ...|+++|.+++.++.|+.++..                               
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~-------------------------------  165 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL-------------------------------  165 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5678999999999999999988765 34799999999999999999887                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++.+.+.+..+|..+.++.     ..++||+|+.         +..+......++.+.++|+
T Consensus       166 -----------------aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFI---------Da~K~~Y~~y~e~~l~lL~  219 (278)
T PLN02476        166 -----------------AGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFV---------DADKRMYQDYFELLLQLVR  219 (278)
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEE---------CCCHHHHHHHHHHHHHhcC
Confidence                             44555788888887663321     1368999994         4445667889999999999


Q ss_pred             CCcEEEEeeCCCc
Q 047406          215 PGGIFVLEPQPWV  227 (290)
Q Consensus       215 pgG~l~i~~~~~~  227 (290)
                      |||++++..--|.
T Consensus       220 ~GGvIV~DNvL~~  232 (278)
T PLN02476        220 VGGVIVMDNVLWH  232 (278)
T ss_pred             CCcEEEEecCccC
Confidence            9999999655443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.90  E-value=1.2e-08  Score=91.11  Aligned_cols=109  Identities=24%  Similarity=0.371  Sum_probs=86.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...++||||||++|.-++.+|...| ..+|+.+|++++..+.|+.++..                               
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~-------------------------------   92 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK-------------------------------   92 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh-------------------------------
Confidence            5678999999999999999998776 46999999999999999999887                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++.++|++..+|..+.++     ...++||+|+.         +..+......+..+.++|+
T Consensus        93 -----------------ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFi---------Da~K~~y~~y~~~~~~ll~  146 (205)
T PF01596_consen   93 -----------------AGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFI---------DADKRNYLEYFEKALPLLR  146 (205)
T ss_dssp             -----------------TTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEE---------ESTGGGHHHHHHHHHHHEE
T ss_pred             -----------------cCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEE---------cccccchhhHHHHHhhhcc
Confidence                             3444578899888865322     12368999994         4455667788999999999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||++++..--|
T Consensus       147 ~ggvii~DN~l~  158 (205)
T PF01596_consen  147 PGGVIIADNVLW  158 (205)
T ss_dssp             EEEEEEEETTTG
T ss_pred             CCeEEEEccccc
Confidence            999999965444

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.89  E-value=6.2e-09  Score=93.21  Aligned_cols=103  Identities=20%  Similarity=0.278  Sum_probs=76.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||||||+|..+..++...+.. +|+++|+++..++.|+.++...+                            
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----------------------------  121 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----------------------------  121 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----------------------------
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----------------------------
Confidence            5799999999999999999999876543 69999999999999999987621                            


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                          + .++.+..+|....++. ..+||.|++.....            .+=..+.+.|++||+
T Consensus       122 --------------------~-~nv~~~~gdg~~g~~~-~apfD~I~v~~a~~------------~ip~~l~~qL~~gGr  167 (209)
T PF01135_consen  122 --------------------I-DNVEVVVGDGSEGWPE-EAPFDRIIVTAAVP------------EIPEALLEQLKPGGR  167 (209)
T ss_dssp             --------------------T-HSEEEEES-GGGTTGG-G-SEEEEEESSBBS------------S--HHHHHTEEEEEE
T ss_pred             --------------------c-CceeEEEcchhhcccc-CCCcCEEEEeeccc------------hHHHHHHHhcCCCcE
Confidence                                1 2688999998775433 46899999976652            112457777899999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      |++-..
T Consensus       168 LV~pi~  173 (209)
T PF01135_consen  168 LVAPIG  173 (209)
T ss_dssp             EEEEES
T ss_pred             EEEEEc
Confidence            999554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.88  E-value=5.3e-08  Score=94.96  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||+|||+|.+++..+. .++.+|+++|+|+.+++.|++++..                              
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~------------------------------  265 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVEL------------------------------  265 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            345789999999999999887554 3456999999999999999999876                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCC---CCCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHh
Q 047406          139 TAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD---SPEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~  211 (290)
                                        +++. ..+++.++|..+.+.   ...++||+|++..-.-   --.+.-...+...++....+
T Consensus       266 ------------------Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~  327 (396)
T PRK15128        266 ------------------NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ  327 (396)
T ss_pred             ------------------cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence                              3443 358899999876321   1245799999863320   00000011345677778899


Q ss_pred             hcCCCcEEEEe
Q 047406          212 LLRPGGIFVLE  222 (290)
Q Consensus       212 ~LkpgG~l~i~  222 (290)
                      +|+|||++++.
T Consensus       328 lLk~gG~lv~~  338 (396)
T PRK15128        328 LLNPGGILLTF  338 (396)
T ss_pred             HcCCCeEEEEE
Confidence            99999999973

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.87  E-value=1.1e-08  Score=88.58  Aligned_cols=113  Identities=21%  Similarity=0.259  Sum_probs=74.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ....++.+|||+|||+|..++.++...+..+|+.+|.++ .++..+.|+....                           
T Consensus        41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~---------------------------   92 (173)
T PF10294_consen   41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG---------------------------   92 (173)
T ss_dssp             GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------------------------
T ss_pred             hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc---------------------------
Confidence            345788999999999999999988875677999999988 9999988876511                           


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC---CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR---DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                         ......+.+...|+-+..   .....+||+|++..++.      ..+....+++.+.++|+
T Consensus        93 -------------------~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y------~~~~~~~L~~tl~~ll~  147 (173)
T PF10294_consen   93 -------------------SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLY------DEELFEPLVRTLKRLLK  147 (173)
T ss_dssp             --------------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-------GGGHHHHHHHHHHHBT
T ss_pred             -------------------ccccccccCcEEEecCcccccccccccCCEEEEecccc------hHHHHHHHHHHHHHHhC
Confidence                               012335777777775521   01236899999999983      34677899999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      |+|.+++..
T Consensus       148 ~~~~vl~~~  156 (173)
T PF10294_consen  148 PNGKVLLAY  156 (173)
T ss_dssp             T-TTEEEEE
T ss_pred             CCCEEEEEe
Confidence            999977754

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.9e-08  Score=91.88  Aligned_cols=104  Identities=22%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|+|+|+|||.++..||... +..+|+..|+.++.++.|++|+..+                             
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-----------------------------  142 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-----------------------------  142 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------------------------
Confidence            5789999999999999999999644 4469999999999999999999873                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                         ++.+.+.+...|..+..  .+..||+|+.           +.+++...+..++++|+|||.
T Consensus       143 -------------------~l~d~v~~~~~Dv~~~~--~~~~vDav~L-----------Dmp~PW~~le~~~~~Lkpgg~  190 (256)
T COG2519         143 -------------------GLGDRVTLKLGDVREGI--DEEDVDAVFL-----------DLPDPWNVLEHVSDALKPGGV  190 (256)
T ss_pred             -------------------ccccceEEEeccccccc--cccccCEEEE-----------cCCChHHHHHHHHHHhCCCcE
Confidence                               34445888888987742  2348999993           346788999999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++-.+
T Consensus       191 ~~~y~P  196 (256)
T COG2519         191 VVVYSP  196 (256)
T ss_pred             EEEEcC
Confidence            999655

>TIGR00417 speE spermidine synthase

Probab=98.84  E-value=2.7e-08  Score=91.91  Aligned_cols=113  Identities=18%  Similarity=0.147  Sum_probs=79.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+||+||||+|..+..+++..+..+++++|+++.+++.|+.++....                               
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~-------------------------------  120 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA-------------------------------  120 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-------------------------------
Confidence            4569999999999999888776545689999999999999998764310                               


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~l  219 (290)
                                    ..--..++.+...|....+....++||+|++.....+.    ....  ...+++.+.+.|+|||++
T Consensus       121 --------------~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~----~~~~l~~~ef~~~~~~~L~pgG~l  182 (270)
T TIGR00417       121 --------------GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVG----PAETLFTKEFYELLKKALNEDGIF  182 (270)
T ss_pred             --------------ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCC----cccchhHHHHHHHHHHHhCCCcEE
Confidence                          00001246666677655333335789999985432110    1112  367889999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       183 v~~~  186 (270)
T TIGR00417       183 VAQS  186 (270)
T ss_pred             EEcC
Confidence            9963

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.84  E-value=2.7e-08  Score=88.47  Aligned_cols=107  Identities=11%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.++.+. +.+|+++|+++.+++.++.++..                                
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~--------------------------------   98 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLAT--------------------------------   98 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999998654443 46999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~LkpgG~  218 (290)
                                      .++ .++.+...|+.+.++....+||+|++..-..       ..-...++..+..  +|.|+++
T Consensus        99 ----------------~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~i  154 (199)
T PRK10909         99 ----------------LKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEAL  154 (199)
T ss_pred             ----------------hCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcE
Confidence                            222 2478888887664332345799999865421       1122344555544  4799999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++++.
T Consensus       155 v~ve~~  160 (199)
T PRK10909        155 IYVESE  160 (199)
T ss_pred             EEEEec
Confidence            999865

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.84  E-value=4.2e-08  Score=90.03  Aligned_cols=107  Identities=19%  Similarity=0.240  Sum_probs=79.1

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+.+|.+|+|.|+|+|.++..|+... |..+|+..|+.++..+.|+++++.                             
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-----------------------------   87 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-----------------------------   87 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-----------------------------
Confidence            45799999999999999999999654 456999999999999999999887                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc-C
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL-R  214 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L-k  214 (290)
                                         .++.+++.+...|.... .+ ..+..+|.|+.-           .+++...+..+.+.| +
T Consensus        88 -------------------~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----------lp~Pw~~i~~~~~~L~~  137 (247)
T PF08704_consen   88 -------------------HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD-----------LPDPWEAIPHAKRALKK  137 (247)
T ss_dssp             -------------------TTCCTTEEEEES-GGCG--STT-TTSEEEEEEE-----------SSSGGGGHHHHHHHE-E
T ss_pred             -------------------cCCCCCceeEecceecccccccccCcccEEEEe-----------CCCHHHHHHHHHHHHhc
Confidence                               34556788999998642 21 123679999941           244556778899999 8


Q ss_pred             CCcEEEEeeC
Q 047406          215 PGGIFVLEPQ  224 (290)
Q Consensus       215 pgG~l~i~~~  224 (290)
                      |||.+++-.+
T Consensus       138 ~gG~i~~fsP  147 (247)
T PF08704_consen  138 PGGRICCFSP  147 (247)
T ss_dssp             EEEEEEEEES
T ss_pred             CCceEEEECC
Confidence            9999999655

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.82  E-value=2e-08  Score=94.80  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+|..  ..+|+|+|+|+.+++.|++++..                                 
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~---------------------------------  217 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAE---------------------------------  217 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence            5789999999999999999885  35899999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++ .++.|.+.|+.+......+.||+|++..--         .++...+.+....+.|++++++
T Consensus       218 ---------------~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr---------~G~~~~~~~~l~~~~~~~ivyv  272 (315)
T PRK03522        218 ---------------LGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR---------RGIGKELCDYLSQMAPRFILYS  272 (315)
T ss_pred             ---------------cCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC---------CCccHHHHHHHHHcCCCeEEEE
Confidence                           334 358899999865322233579999986331         1222222233344789999999


Q ss_pred             eeCC
Q 047406          222 EPQP  225 (290)
Q Consensus       222 ~~~~  225 (290)
                      ++.|
T Consensus       273 sc~p  276 (315)
T PRK03522        273 SCNA  276 (315)
T ss_pred             ECCc
Confidence            8764

>PLN02366 spermidine synthase

Probab=98.82  E-value=3.5e-08  Score=93.27  Aligned_cols=118  Identities=21%  Similarity=0.233  Sum_probs=83.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||+||||.|..+..+++..+..+|+.+|+++.+++.|++++....                              
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~------------------------------  139 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA------------------------------  139 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc------------------------------
Confidence            46789999999999999998876444689999999999999999765310                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg  216 (290)
                                      ..+ ..++.+...|....+.. +.++||+|++-..-.+.    ....  -..++..+.++|+||
T Consensus       140 ----------------~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pg  199 (308)
T PLN02366        140 ----------------VGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG----PAQELFEKPFFESVARALRPG  199 (308)
T ss_pred             ----------------cccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCC
Confidence                            111 23688899997553222 35689999984322110    0111  257899999999999


Q ss_pred             cEEEEeeC-CCch
Q 047406          217 GIFVLEPQ-PWVS  228 (290)
Q Consensus       217 G~l~i~~~-~~~~  228 (290)
                      |+++.+.. +|..
T Consensus       200 Gvlv~q~~s~~~~  212 (308)
T PLN02366        200 GVVCTQAESMWLH  212 (308)
T ss_pred             cEEEECcCCcccc
Confidence            99988544 3543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.79  E-value=3.6e-08  Score=84.57  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..  +.+++++|+|+.+++.+++++..                                
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--------------------------------   57 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--------------------------------   57 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--------------------------------
Confidence            46789999999999999999887  45899999999999999876421                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+...|+.+ ++.+...||.|+++.-.+     ...+.+..++...  .+.++|+++
T Consensus        58 -------------------~~~v~ii~~D~~~-~~~~~~~~d~vi~n~Py~-----~~~~~i~~~l~~~--~~~~~~~l~  110 (169)
T smart00650       58 -------------------ADNLTVIHGDALK-FDLPKLQPYKVVGNLPYN-----ISTPILFKLLEEP--PAFRDAVLM  110 (169)
T ss_pred             -------------------CCCEEEEECchhc-CCccccCCCEEEECCCcc-----cHHHHHHHHHhcC--CCcceEEEE
Confidence                               1357888999877 344445699999864432     1123333443321  244888888


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      ++.
T Consensus       111 ~q~  113 (169)
T smart00650      111 VQK  113 (169)
T ss_pred             EEH
Confidence            863

>PRK03612 spermidine synthase; Provisional

Probab=98.77  E-value=4e-08  Score=98.90  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHH--HHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHL--RKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      +++++|||+|||+|..+..+++. +. .+|+++|+|+++++.++++.  ....                           
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~---------------------------  347 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALN---------------------------  347 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhh---------------------------
Confidence            45689999999999999988874 54 69999999999999999842  2100                           


Q ss_pred             hhhHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          138 VTAAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                        ...+ ..++++...|..+......++||+|++...-.+.. .-..---..+++.+.++|+||
T Consensus       348 ------------------~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~-~~~~L~t~ef~~~~~~~L~pg  408 (521)
T PRK03612        348 ------------------GGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNP-ALGKLYSVEFYRLLKRRLAPD  408 (521)
T ss_pred             ------------------ccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCc-chhccchHHHHHHHHHhcCCC
Confidence                              0011 23578888887764333457899999864321100 000001146889999999999


Q ss_pred             cEEEEee
Q 047406          217 GIFVLEP  223 (290)
Q Consensus       217 G~l~i~~  223 (290)
                      |+++++.
T Consensus       409 G~lv~~~  415 (521)
T PRK03612        409 GLLVVQS  415 (521)
T ss_pred             eEEEEec
Confidence            9999964

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.77  E-value=7e-08  Score=86.93  Aligned_cols=166  Identities=17%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             hhhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           51 PRFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        51 ~~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      |.|..+...  ..++.+||..|||.|.-...||.+  +.+|+|+|+|+.+++.+.+....          .+.....   
T Consensus        24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~----------~~~~~~~---   88 (218)
T PF05724_consen   24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNL----------EPTVTSV---   88 (218)
T ss_dssp             HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTT----------EEECTTC---
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhcc----------CCCcccc---
Confidence            445444333  456779999999999999999987  46999999999999998442110          0000000   


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                              ......-..+|++.++|+.+..+...++||+|+=...+  +.+  ..+.-.+..++
T Consensus        89 ------------------------~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l--~Al--pp~~R~~Ya~~  140 (218)
T PF05724_consen   89 ------------------------GGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFL--CAL--PPEMRERYAQQ  140 (218)
T ss_dssp             ------------------------TTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSST--TTS---GGGHHHHHHH
T ss_pred             ------------------------cceeeecCCceEEEEcccccCChhhcCCceEEEEeccc--ccC--CHHHHHHHHHH
Confidence                                    00000112468999999988433333689999988777  333  35566799999


Q ss_pred             HHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          209 IWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       209 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.++|+|||.+++...   .|...       ...-+...+.++++.+ ++. .+|++..+...
T Consensus       141 l~~ll~p~g~~lLi~l---~~~~~-------~~~GPPf~v~~~ev~~-l~~-~~f~i~~l~~~  191 (218)
T PF05724_consen  141 LASLLKPGGRGLLITL---EYPQG-------EMEGPPFSVTEEEVRE-LFG-PGFEIEELEEE  191 (218)
T ss_dssp             HHHCEEEEEEEEEEEE---ES-CS-------CSSSSS----HHHHHH-HHT-TTEEEEEEEEE
T ss_pred             HHHHhCCCCcEEEEEE---EcCCc-------CCCCcCCCCCHHHHHH-Hhc-CCcEEEEEecc
Confidence            9999999999544321   01110       0111222345555555 566 89987766543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PHA03412 putative methyltransferase; Provisional

Probab=98.75  E-value=7.4e-08  Score=87.76  Aligned_cols=103  Identities=10%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC---CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN---CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~---~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.+|||+|||+|.++..++.+++   ..+|+++|+++.+++.|+.+..                               
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------------------------------   97 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------------------------------   97 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------------------------------
Confidence            468999999999999999887643   4589999999999999987532                               


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhhh---cCCchHHHHHHHHHHhh
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIHL---NWGDDGLITLFMRIWKL  212 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~l---~~~~~~~~~~l~~~~~~  212 (290)
                                             .+.+...|+.+. + ..++||+|+|+.-..   .-+.   .-+..-...++..+.++
T Consensus        98 -----------------------~~~~~~~D~~~~-~-~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L  152 (241)
T PHA03412         98 -----------------------EATWINADALTT-E-FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI  152 (241)
T ss_pred             -----------------------CCEEEEcchhcc-c-ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH
Confidence                                   266778888652 2 246899999974321   0000   00122346788899886


Q ss_pred             cCCCcEEEE
Q 047406          213 LRPGGIFVL  221 (290)
Q Consensus       213 LkpgG~l~i  221 (290)
                      +++|+ +++
T Consensus       153 l~~G~-~IL  160 (241)
T PHA03412        153 ARQGT-FII  160 (241)
T ss_pred             cCCCE-EEe
Confidence            66655 455

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.74  E-value=3.8e-08  Score=92.66  Aligned_cols=124  Identities=18%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      |.....++..++++|||-|.-.+-..+. +-..++|+||.+-+++.|+...+.+-..                       
T Consensus       111 I~~y~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r-----------------------  166 (389)
T KOG1975|consen  111 INLYTKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNR-----------------------  166 (389)
T ss_pred             HHHHhccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhh-----------------------
Confidence            3344578899999999999877665543 3348999999999999999988763210                       


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                             .             ........|..+|....     ++..+.+||+|.|-+++||..-  ..+..+.++.++.
T Consensus       167 -------~-------------~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe--tee~ar~~l~Nva  224 (389)
T KOG1975|consen  167 -------F-------------KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE--TEESARIALRNVA  224 (389)
T ss_pred             -------h-------------hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeec--cHHHHHHHHHHHH
Confidence                   0             01112356777775441     3223334999999999875421  4566689999999


Q ss_pred             hhcCCCcEEEEeeCC
Q 047406          211 KLLRPGGIFVLEPQP  225 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~  225 (290)
                      ++|+|||+++-..|+
T Consensus       225 ~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  225 KCLKPGGVFIGTIPD  239 (389)
T ss_pred             hhcCCCcEEEEecCc
Confidence            999999999997654

>PRK01581 speE spermidine synthase; Validated

Probab=98.72  E-value=1.3e-07  Score=91.15  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+||+||||+|..+..+++..+..+|+++|+|+.+++.|+......                 ...           
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~-----------------~~~-----------  200 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELV-----------------SLN-----------  200 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccc-----------------hhc-----------
Confidence            4568999999999998888777544569999999999999999621110                 000           


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                     ...+ ..++.+...|..+.+....+.||+|++-..-..... ...---..++..+.+.|+|||++
T Consensus       201 ---------------~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~  264 (374)
T PRK01581        201 ---------------KSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATEL-LSTLYTSELFARIATFLTEDGAF  264 (374)
T ss_pred             ---------------cccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccc-hhhhhHHHHHHHHHHhcCCCcEE
Confidence                           0011 236888888887644445578999998521100000 00001157889999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       265 V~Qs  268 (374)
T PRK01581        265 VCQS  268 (374)
T ss_pred             EEec
Confidence            9864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.72  E-value=5.6e-08  Score=92.36  Aligned_cols=47  Identities=26%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+.++||||||+|.+...++...+.++++|+|+|+.+++.|+.++..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~  160 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA  160 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            45799999999999888888887788999999999999999999876

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.71  E-value=2.3e-07  Score=89.79  Aligned_cols=103  Identities=18%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||++||+|.+++.++..  ..+|+|+|+|+.+++.|+.++..                                
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~--------------------------------  277 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQM--------------------------------  277 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            35689999999999999998864  46899999999999999998865                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH-HHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL-ITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~-~~~l~~~~~~LkpgG~l  219 (290)
                                      .++ .++.|...|+.+........||+|++..--         .++ ..++..+. .++|++++
T Consensus       278 ----------------~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr---------~G~~~~~l~~l~-~~~p~~iv  330 (374)
T TIGR02085       278 ----------------LGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR---------RGIGKELCDYLS-QMAPKFIL  330 (374)
T ss_pred             ----------------cCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC---------CCCcHHHHHHHH-hcCCCeEE
Confidence                            333 258899999865322122459999975332         111 34444443 47999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++++.
T Consensus       331 yvsc~  335 (374)
T TIGR02085       331 YSSCN  335 (374)
T ss_pred             EEEeC
Confidence            99865

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.70  E-value=2.4e-07  Score=88.27  Aligned_cols=157  Identities=22%  Similarity=0.277  Sum_probs=103.6

Q ss_pred             CCchhhHHh---hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhch
Q 047406           48 NEDPRFKVL---KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASR  124 (290)
Q Consensus        48 ~~~~~l~~l---~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  124 (290)
                      ..+|++.-.   .+...+|..+||--||||.+.+.. ..++ .+++|+|++..+++-|+.|+..                
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEa-gl~G-~~viG~Did~~mv~gak~Nl~~----------------  241 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEA-GLMG-ARVIGSDIDERMVRGAKINLEY----------------  241 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhh-hhcC-ceEeecchHHHHHhhhhhhhhh----------------
Confidence            334555433   344578999999999999999984 4444 5899999999999999999876                


Q ss_pred             hhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeec-ccccCCCCCCCceeEEEEchh------hhhhhhcC
Q 047406          125 VEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQE-NFVHGRDSPEKYYDAILCLSV------TKWIHLNW  197 (290)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~fD~I~~~~v------l~~~~l~~  197 (290)
                                                      .++. ...+... |... +|.+...+|.|+|-.-      .+-..+  
T Consensus       242 --------------------------------y~i~-~~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~~~~l--  285 (347)
T COG1041         242 --------------------------------YGIE-DYPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIKGEGL--  285 (347)
T ss_pred             --------------------------------hCcC-ceeEEEeccccc-CCCCCCccceEEecCCCCcccccccccH--
Confidence                                            1111 2323333 6655 5666667999999211      100000  


Q ss_pred             CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCC
Q 047406          198 GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSS  277 (290)
Q Consensus       198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~  277 (290)
                       ++-..++|+.+.++|++||++++..+                          ..... .+...||.++..+... .+  
T Consensus       286 -~~Ly~~~le~~~evLk~gG~~vf~~p--------------------------~~~~~-~~~~~~f~v~~~~~~~-~H--  334 (347)
T COG1041         286 -DELYEEALESASEVLKPGGRIVFAAP--------------------------RDPRH-ELEELGFKVLGRFTMR-VH--  334 (347)
T ss_pred             -HHHHHHHHHHHHHHhhcCcEEEEecC--------------------------Ccchh-hHhhcCceEEEEEEEe-ec--
Confidence             13357899999999999999999532                          11112 4667999999888773 12  


Q ss_pred             CCCCCcceeeecC
Q 047406          278 KTGFNRPIFLFRK  290 (290)
Q Consensus       278 ~~~~~~~~~~~~k  290 (290)
                       ....|.|.++++
T Consensus       335 -~sLtR~i~v~~~  346 (347)
T COG1041         335 -GSLTRVIYVVRK  346 (347)
T ss_pred             -CceEEEEEEEec
Confidence             223456666553

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.70  E-value=1.6e-07  Score=92.19  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|+.++..                                
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~--------------------------------  336 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAEL--------------------------------  336 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHH--------------------------------
Confidence            45689999999999999999886  34899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchH-HHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDG-LITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~-~~~~l~~~~~~Lkpg  216 (290)
                                      .++ .++.|...|+.+.++   .....||+|++..--         .+ ...+++.+. .++|+
T Consensus       337 ----------------~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---------~G~~~~~l~~l~-~l~~~  389 (431)
T TIGR00479       337 ----------------NGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---------KGCAAEVLRTII-ELKPE  389 (431)
T ss_pred             ----------------hCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---------CCCCHHHHHHHH-hcCCC
Confidence                            222 358899999765221   223579999964321         12 234455544 48899


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      +++++++.
T Consensus       390 ~ivyvsc~  397 (431)
T TIGR00479       390 RIVYVSCN  397 (431)
T ss_pred             EEEEEcCC
Confidence            99999754

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.69  E-value=1.1e-07  Score=84.18  Aligned_cols=112  Identities=24%  Similarity=0.311  Sum_probs=80.1

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..+||||||.|.+.+.+|+.+|...++|+|++...+..+...+..                                   
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-----------------------------------   63 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-----------------------------------   63 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----------------------------------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----------------------------------
Confidence            389999999999999999999999999999999999999887765                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCcEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG~l  219 (290)
                                   .++ .++.+.+.|....+  -.+++++|.|+..+-=-|..-...+.  -...++..+.++|+|||.+
T Consensus        64 -------------~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l  129 (195)
T PF02390_consen   64 -------------RGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL  129 (195)
T ss_dssp             -------------HTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred             -------------hcc-cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence                         222 46888988876621  12458899999865543331100000  1158899999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      .+.+.
T Consensus       130 ~~~TD  134 (195)
T PF02390_consen  130 YFATD  134 (195)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.68  E-value=1.4e-07  Score=86.60  Aligned_cols=110  Identities=19%  Similarity=0.325  Sum_probs=86.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...++|||||++.|.-++.+|...+ ..+|+.+|++++..+.|+.++..                               
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-------------------------------  126 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-------------------------------  126 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            3567999999999999999887764 45899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                       .++.+.|++..++..+.++.      ..++||+|+.         +.++..-...+..+.++|
T Consensus       127 -----------------ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFi---------DadK~~Y~~y~~~~l~ll  180 (247)
T PLN02589        127 -----------------AGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFV---------DADKDNYINYHKRLIDLV  180 (247)
T ss_pred             -----------------CCCCCceEEEeccHHHHHHHHHhccccCCcccEEEe---------cCCHHHhHHHHHHHHHhc
Confidence                             44556788988887764322      1368999995         334556678888999999


Q ss_pred             CCCcEEEEeeCCCc
Q 047406          214 RPGGIFVLEPQPWV  227 (290)
Q Consensus       214 kpgG~l~i~~~~~~  227 (290)
                      +|||++++..--|.
T Consensus       181 ~~GGviv~DNvl~~  194 (247)
T PLN02589        181 KVGGVIGYDNTLWN  194 (247)
T ss_pred             CCCeEEEEcCCCCC
Confidence            99999999655454

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.67  E-value=1.7e-07  Score=82.56  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.++||++||+|.+++.++.+ ++.+|+++|.++.+++.+++++..                                
T Consensus        48 ~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~--------------------------------   94 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLAL--------------------------------   94 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            47899999999999999998876 445899999999999999999876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~Lkp  215 (290)
                                      .++..++.+...|....+.   .....||+|+.-.-       +.......++..+.+  +|++
T Consensus        95 ----------------~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP-------y~~~~~~~~l~~l~~~~~l~~  151 (189)
T TIGR00095        95 ----------------LKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP-------FFNGALQALLELCENNWILED  151 (189)
T ss_pred             ----------------hCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC-------CCCCcHHHHHHHHHHCCCCCC
Confidence                            2233357778888754221   11234788886322       222333455555543  6899


Q ss_pred             CcEEEEeeC
Q 047406          216 GGIFVLEPQ  224 (290)
Q Consensus       216 gG~l~i~~~  224 (290)
                      +|++++++.
T Consensus       152 ~~iiv~E~~  160 (189)
T TIGR00095       152 TVLIVVEED  160 (189)
T ss_pred             CeEEEEEec
Confidence            999999765

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.66  E-value=2.9e-07  Score=83.47  Aligned_cols=119  Identities=14%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+||+.|||.|..+..||..  +.+|+|+|+|+.+++.+.+....       .++        +...+..        
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~-------~~~--------~~~~~~~--------   97 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTI-------NYE--------VIHGNDY--------   97 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCC-------Ccc--------eeccccc--------
Confidence            5689999999999999999986  55899999999999988552110       000        0000000        


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                    ...-...+++.++|+.+..+  ...+.||+|+=...+  +++  ..+.-.+.+..+.++|+|||.+
T Consensus        98 --------------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~--~Al--pp~~R~~Y~~~l~~lL~pgg~l  159 (226)
T PRK13256         98 --------------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAY--IAL--PNDLRTNYAKMMLEVCSNNTQI  159 (226)
T ss_pred             --------------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhH--hcC--CHHHHHHHHHHHHHHhCCCcEE
Confidence                          00012358999999988422  223689999998888  444  3455579999999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       160 lll~  163 (226)
T PRK13256        160 LLLV  163 (226)
T ss_pred             EEEE
Confidence            8853

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.63  E-value=3.9e-07  Score=88.64  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|++||++-|-||.+++..|. .++.+|+++|+|..++++|++|+..                                
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~L--------------------------------  262 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAEL--------------------------------  262 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHh--------------------------------
Confidence            3499999999999999998655 4666999999999999999999987                                


Q ss_pred             HHHHHHhhhcCCCccccCcC-cceeEeecccccCCCC---CCCceeEEEEchhhhhhhh-----cCCchHHHHHHHHHHh
Q 047406          141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHL-----NWGDDGLITLFMRIWK  211 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l-----~~~~~~~~~~l~~~~~  211 (290)
                                      +++. ..+.+++.|..+.+..   ...+||+|+.-.-.  +.-     .-...+...++..+.+
T Consensus       263 ----------------Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~  324 (393)
T COG1092         263 ----------------NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPS--FARSKKQEFSAQRDYKDLNDLALR  324 (393)
T ss_pred             ----------------cCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcc--cccCcccchhHHHHHHHHHHHHHH
Confidence                            4443 4578999998774322   33589999983111  000     0012455789999999


Q ss_pred             hcCCCcEEEEee
Q 047406          212 LLRPGGIFVLEP  223 (290)
Q Consensus       212 ~LkpgG~l~i~~  223 (290)
                      +|+|||++++..
T Consensus       325 iL~pgG~l~~~s  336 (393)
T COG1092         325 LLAPGGTLVTSS  336 (393)
T ss_pred             HcCCCCEEEEEe
Confidence            999999999964

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.61  E-value=9.8e-07  Score=76.99  Aligned_cols=116  Identities=24%  Similarity=0.283  Sum_probs=75.6

Q ss_pred             hhhccCCCcEEEecCCCChhhHHHHhHcCCce---------EEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhh
Q 047406           57 KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRS---------ILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEV  127 (290)
Q Consensus        57 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~---------i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  127 (290)
                      ...+.++..+||.-||+|.+.+..+.......         ++|+|+++.+++.|+.|+..                   
T Consensus        23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-------------------   83 (179)
T PF01170_consen   23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-------------------   83 (179)
T ss_dssp             HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-------------------
T ss_pred             HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-------------------
Confidence            34567889999999999999988777665545         89999999999999999876                   


Q ss_pred             hhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh-hhhhcCC-chHHHHH
Q 047406          128 IEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK-WIHLNWG-DDGLITL  205 (290)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~-~~~l~~~-~~~~~~~  205 (290)
                                                   .++...+.+.+.|+.+ ++...+.+|.|+|..-.- .+..... ..-...+
T Consensus        84 -----------------------------ag~~~~i~~~~~D~~~-l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~  133 (179)
T PF01170_consen   84 -----------------------------AGVEDYIDFIQWDARE-LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQF  133 (179)
T ss_dssp             -----------------------------TT-CGGEEEEE--GGG-GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHH
T ss_pred             -----------------------------cccCCceEEEecchhh-cccccCCCCEEEECcchhhhccCHHHHHHHHHHH
Confidence                                         3344568899999877 444567999999952210 0000000 0112567


Q ss_pred             HHHHHhhcCCCcEEEE
Q 047406          206 FMRIWKLLRPGGIFVL  221 (290)
Q Consensus       206 l~~~~~~LkpgG~l~i  221 (290)
                      ++++.+++++..++++
T Consensus       134 ~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen  134 LRELKRVLKPRAVFLT  149 (179)
T ss_dssp             HHHHHCHSTTCEEEEE
T ss_pred             HHHHHHHCCCCEEEEE
Confidence            8888888999444444

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=9.6e-07  Score=77.31  Aligned_cols=134  Identities=22%  Similarity=0.368  Sum_probs=94.8

Q ss_pred             CCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ..-|+|||||+|.++..+++... ..-..++|++|.+++..+..++.+                                
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n--------------------------------   91 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN--------------------------------   91 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc--------------------------------
Confidence            57899999999999999988765 345779999999999988887652                                


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch----------hhhhhhhcC-----CchHHHHHH
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS----------VTKWIHLNW-----GDDGLITLF  206 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~----------vl~~~~l~~-----~~~~~~~~l  206 (290)
                                      ..  .++..+.|+...+.  .++.|+++.+.          ..+|+...|     |.+-..+++
T Consensus        92 ----------------~~--~~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll  151 (209)
T KOG3191|consen   92 ----------------RV--HIDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLL  151 (209)
T ss_pred             ----------------CC--ccceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHH
Confidence                            11  36677777766432  26778777641          123555555     344457899


Q ss_pred             HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      .++-.+|+|.|.+++..-               .      .-.+++... .+++-||.......
T Consensus       152 ~~v~~iLSp~Gv~Ylv~~---------------~------~N~p~ei~k-~l~~~g~~~~~~~~  193 (209)
T KOG3191|consen  152 PQVPDILSPRGVFYLVAL---------------R------ANKPKEILK-ILEKKGYGVRIAMQ  193 (209)
T ss_pred             hhhhhhcCcCceEEeeeh---------------h------hcCHHHHHH-HHhhcccceeEEEE
Confidence            999999999999999532               0      123455666 67888888665544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.60  E-value=2.6e-07  Score=87.84  Aligned_cols=110  Identities=21%  Similarity=0.332  Sum_probs=79.3

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      +.++++++|||+|||+|++++..|+. +..+|+++|-|.-+ +.|.+.+..                             
T Consensus        56 ~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~-----------------------------  104 (346)
T KOG1499|consen   56 KHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKD-----------------------------  104 (346)
T ss_pred             hhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHh-----------------------------
Confidence            34689999999999999999987765 57799999987644 888776655                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         +++.+.+++.++...+- ..|....|+|+|-+.-.|+-.   ..-+..++-.=-+.|+|||
T Consensus       105 -------------------N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~Ll~---EsMldsVl~ARdkwL~~~G  161 (346)
T KOG1499|consen  105 -------------------NGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYFLLY---ESMLDSVLYARDKWLKEGG  161 (346)
T ss_pred             -------------------cCccceEEEeecceEEE-ecCccceeEEeehhhhHHHHH---hhhhhhhhhhhhhccCCCc
Confidence                               66667788888887662 345688999999555443321   1223444444456799999


Q ss_pred             EEEE
Q 047406          218 IFVL  221 (290)
Q Consensus       218 ~l~i  221 (290)
                      .++=
T Consensus       162 ~i~P  165 (346)
T KOG1499|consen  162 LIYP  165 (346)
T ss_pred             eEcc
Confidence            8764

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2.1e-07  Score=81.90  Aligned_cols=74  Identities=26%  Similarity=0.403  Sum_probs=60.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...|.+|+|+|||+|++++..+. +++..|+|+|+|+++++.++.|...                               
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~-------------------------------   90 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE-------------------------------   90 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh-------------------------------
Confidence            35788999999999999998655 5667999999999999999998764                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS  188 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~  188 (290)
                                         +..++.|...|..+    ..+++|.++++.
T Consensus        91 -------------------l~g~v~f~~~dv~~----~~~~~dtvimNP  116 (198)
T COG2263          91 -------------------LLGDVEFVVADVSD----FRGKFDTVIMNP  116 (198)
T ss_pred             -------------------hCCceEEEEcchhh----cCCccceEEECC
Confidence                               33468999999866    346788888753

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.53  E-value=4.6e-07  Score=80.73  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ....++.+|+|+.||.|.+++.+|+...+..|+++|++|.+++..+.+++.                             
T Consensus        97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l-----------------------------  147 (200)
T PF02475_consen   97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL-----------------------------  147 (200)
T ss_dssp             TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH-----------------------------
T ss_pred             hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH-----------------------------
Confidence            345789999999999999999999865677899999999999999999887                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         +.+...+....+|..+..+  ...+|.|++...-          ....++..+..++++||
T Consensus       148 -------------------Nkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~----------~~~~fl~~~~~~~~~~g  196 (200)
T PF02475_consen  148 -------------------NKVENRIEVINGDAREFLP--EGKFDRVIMNLPE----------SSLEFLDAALSLLKEGG  196 (200)
T ss_dssp             -------------------TT-TTTEEEEES-GGG-----TT-EEEEEE--TS----------SGGGGHHHHHHHEEEEE
T ss_pred             -------------------cCCCCeEEEEcCCHHHhcC--ccccCEEEECChH----------HHHHHHHHHHHHhcCCc
Confidence                               5566678899999887533  6889999975331          22356778999999999


Q ss_pred             EEE
Q 047406          218 IFV  220 (290)
Q Consensus       218 ~l~  220 (290)
                      ++-
T Consensus       197 ~ih  199 (200)
T PF02475_consen  197 IIH  199 (200)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.52  E-value=7.6e-07  Score=80.79  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=85.1

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..+||||||.|.+.+.+|+..|...++|+|+....+..|.+.+..                                   
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----------------------------------   94 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----------------------------------   94 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----------------------------------
Confidence            589999999999999999999999999999999999999987765                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCcEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG~l  219 (290)
                                   .++. ++.+.+.|....+  -.++++.|-|+.++-=-|.---..+.  ....++..+.+.|+|||.|
T Consensus        95 -------------~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l  160 (227)
T COG0220          95 -------------LGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVL  160 (227)
T ss_pred             -------------cCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEE
Confidence                         3343 6888888876632  23456899999765543321000000  1258899999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      .+.+.
T Consensus       161 ~~aTD  165 (227)
T COG0220         161 HFATD  165 (227)
T ss_pred             EEEec
Confidence            99764

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.51  E-value=2.6e-07  Score=81.09  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.++||+-||||.+++..+.+ ++.+|+.+|.|+.++...++|+....                              
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~------------------------------   89 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG------------------------------   89 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT------------------------------
T ss_pred             cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC------------------------------
Confidence            58999999999999999996665 56799999999999999999998732                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchH-HHHHHHHHH--hhcC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDG-LITLFMRIW--KLLR  214 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~-~~~~l~~~~--~~Lk  214 (290)
                                        ..+.+.....|....+.   ....+||+|+.-.       ++.... ...++..+.  .+|+
T Consensus        90 ------------------~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP-------PY~~~~~~~~~l~~l~~~~~l~  144 (183)
T PF03602_consen   90 ------------------LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP-------PYAKGLYYEELLELLAENNLLN  144 (183)
T ss_dssp             -------------------GGGEEEEESSHHHHHHHHHHCTS-EEEEEE---------STTSCHHHHHHHHHHHHTTSEE
T ss_pred             ------------------CCcceeeeccCHHHHHHhhcccCCCceEEEECC-------CcccchHHHHHHHHHHHCCCCC
Confidence                              22346677777544221   1357899999642       233344 367777777  7899


Q ss_pred             CCcEEEEeeC
Q 047406          215 PGGIFVLEPQ  224 (290)
Q Consensus       215 pgG~l~i~~~  224 (290)
                      ++|++++++.
T Consensus       145 ~~~~ii~E~~  154 (183)
T PF03602_consen  145 EDGLIIIEHS  154 (183)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCEEEEEEec
Confidence            9999999864

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.50  E-value=6.8e-07  Score=85.04  Aligned_cols=144  Identities=23%  Similarity=0.239  Sum_probs=98.9

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ...+|+|.|.|.++..+..+||.  |-+++.+..-+-.+..++.                                    
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~------------------------------------  220 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA------------------------------------  220 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc------------------------------------
Confidence            68999999999999999998874  6677776666555544321                                    


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                                       ..+++.-+|+.+..|.    -|+|++-+++|    +|++++...+|++|+..|+|+|.+++..
T Consensus       221 -----------------~gV~~v~gdmfq~~P~----~daI~mkWiLh----dwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  221 -----------------PGVEHVAGDMFQDTPK----GDAIWMKWILH----DWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             -----------------CCcceecccccccCCC----cCeEEEEeecc----cCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                             1377888888876433    36999877775    6789999999999999999999999954


Q ss_pred             CCCchhhhhh-------h-hhhhhhccc-cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          224 QPWVSYEKNR-------R-VSETTATNF-QNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       224 ~~~~~~~~~~-------~-~~~~~~~~~-~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .....-....       . ......... .+...+..+|+. ++.++||....+...
T Consensus       276 ~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~-l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  276 NVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQA-LLPEEGFPVCMVALT  331 (342)
T ss_pred             ccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHh-cchhhcCceeEEEec
Confidence            4222100000       0 000111111 133456677777 899999998887665

>PLN02823 spermine synthase

Probab=98.50  E-value=7.5e-07  Score=85.22  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||.||+|.|..+..+++..+..+|+++|+++.+++.|+.++...                               
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~-------------------------------  150 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVN-------------------------------  150 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccc-------------------------------
Confidence            3557999999999999998887655668999999999999999875320                               


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCC-chH--HHHHHH-HHHhhcCC
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG-DDG--LITLFM-RIWKLLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~-~~~--~~~~l~-~~~~~Lkp  215 (290)
                                     ...+ ..++.+...|.+..+....++||+|++-..-.+   ..+ ...  -..+++ .+.+.|+|
T Consensus       151 ---------------~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~---~~~~~~~Lyt~eF~~~~~~~~L~p  212 (336)
T PLN02823        151 ---------------REAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPV---EGGPCYQLYTKSFYERIVKPKLNP  212 (336)
T ss_pred             ---------------cccccCCceEEEEChhHHHHhhCCCCccEEEecCCCcc---ccCcchhhccHHHHHHHHHHhcCC
Confidence                           0011 246888888877754445678999997421000   000 011  146777 78999999


Q ss_pred             CcEEEEeeC
Q 047406          216 GGIFVLEPQ  224 (290)
Q Consensus       216 gG~l~i~~~  224 (290)
                      ||++++...
T Consensus       213 ~Gvlv~q~~  221 (336)
T PLN02823        213 GGIFVTQAG  221 (336)
T ss_pred             CcEEEEecc
Confidence            999998654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.48  E-value=6.3e-07  Score=88.78  Aligned_cols=105  Identities=16%  Similarity=0.201  Sum_probs=73.8

Q ss_pred             CCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           63 GKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +..|+|||||+|.+....++..    ...+|+++|-++.++...+..+..                              
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~------------------------------  236 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA------------------------------  236 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH------------------------------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh------------------------------
Confidence            4689999999999977655432    245999999999988777665444                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        +++.+.|++..+|+.+ ...| .+.|+|+|    .|+...+..+-...+|....+.|+|||+
T Consensus       237 ------------------n~w~~~V~vi~~d~r~-v~lp-ekvDIIVS----ElLGsfg~nEl~pE~Lda~~rfLkp~Gi  292 (448)
T PF05185_consen  237 ------------------NGWGDKVTVIHGDMRE-VELP-EKVDIIVS----ELLGSFGDNELSPECLDAADRFLKPDGI  292 (448)
T ss_dssp             ------------------TTTTTTEEEEES-TTT-SCHS-S-EEEEEE-------BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred             ------------------cCCCCeEEEEeCcccC-CCCC-CceeEEEE----eccCCccccccCHHHHHHHHhhcCCCCE
Confidence                              5666789999999987 3333 58999998    3333223345567788899999999988


Q ss_pred             EEE
Q 047406          219 FVL  221 (290)
Q Consensus       219 l~i  221 (290)
                      ++=
T Consensus       293 ~IP  295 (448)
T PF05185_consen  293 MIP  295 (448)
T ss_dssp             EES
T ss_pred             EeC
Confidence            763

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.42  E-value=2.3e-06  Score=77.66  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=35.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVAD  101 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~  101 (290)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            47789999999999999999886 56689999999988866

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.40  E-value=8.1e-08  Score=95.00  Aligned_cols=51  Identities=27%  Similarity=0.554  Sum_probs=40.3

Q ss_pred             cCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCc
Q 047406          172 HGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWV  227 (290)
Q Consensus       172 ~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  227 (290)
                      ..+|+|+..||+|.|..++    +.|...+ .-+|-++.|+|+|||+++++.+|-.
T Consensus       173 ~rLPfp~~~fDmvHcsrc~----i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  173 QRLPFPSNAFDMVHCSRCL----IPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             ccccCCccchhhhhccccc----ccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence            3478899999999998887    3453433 3588899999999999999887643

; GO: 0008168 methyltransferase activity

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.8e-06  Score=77.20  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=86.4

Q ss_pred             hhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCc--eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh
Q 047406           52 RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCR--SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE  129 (290)
Q Consensus        52 ~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~--~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (290)
                      .++.|...+.+|...||+|+|+|.++..++....+.  ...|+|.-++.++.+++++.....+    .+-..+.      
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~----~e~~~~~------  141 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT----SESSSKL------  141 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC----chhhhhh------
Confidence            366777778899999999999999999888655433  3399999999999999999873211    0000000      


Q ss_pred             ccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                                                   -...+.+..+|.+.. .....+||.|+|-...            ..+.+++
T Consensus       142 -----------------------------~~~~l~ivvGDgr~g-~~e~a~YDaIhvGAaa------------~~~pq~l  179 (237)
T KOG1661|consen  142 -----------------------------KRGELSIVVGDGRKG-YAEQAPYDAIHVGAAA------------SELPQEL  179 (237)
T ss_pred             -----------------------------ccCceEEEeCCcccc-CCccCCcceEEEccCc------------cccHHHH
Confidence                                         012467778888774 3345899999986443            3445667


Q ss_pred             HhhcCCCcEEEEeeC
Q 047406          210 WKLLRPGGIFVLEPQ  224 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~  224 (290)
                      ...|+|||.+++-..
T Consensus       180 ~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  180 LDQLKPGGRLLIPVG  194 (237)
T ss_pred             HHhhccCCeEEEeec
Confidence            778899999999543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.37  E-value=1.4e-06  Score=81.53  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=78.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...|++|||+-|=+|.+++..+ ..++.+|+++|.|..++++++.|+..                               
T Consensus       121 ~~~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~l-------------------------------  168 (286)
T PF10672_consen  121 YAKGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAAL-------------------------------  168 (286)
T ss_dssp             HCTTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHH-------------------------------
T ss_pred             HcCCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            3678999999999999999854 45666899999999999999999887                               


Q ss_pred             hHHHHHHhhhcCCCccccCcC-cceeEeecccccCCCC--CCCceeEEEEchhh---hhhhhcCCchHHHHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS--PEKYYDAILCLSVT---KWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl---~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                       +++. +.+.|.+.|..+.+..  ..++||+|++-.-.   .-..+   ..+...++..+.++|
T Consensus       169 -----------------Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~---~~~y~~L~~~a~~ll  228 (286)
T PF10672_consen  169 -----------------NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDL---ERDYKKLLRRAMKLL  228 (286)
T ss_dssp             -----------------TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEH---HHHHHHHHHHHHHTE
T ss_pred             -----------------cCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHhc
Confidence                             4443 4688999998663211  23689999993111   00001   145578899999999


Q ss_pred             CCCcEEEEe
Q 047406          214 RPGGIFVLE  222 (290)
Q Consensus       214 kpgG~l~i~  222 (290)
                      +|||+|++.
T Consensus       229 ~~gG~l~~~  237 (286)
T PF10672_consen  229 KPGGLLLTC  237 (286)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence            999998874

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.36  E-value=3.4e-06  Score=79.25  Aligned_cols=65  Identities=22%  Similarity=0.381  Sum_probs=49.2

Q ss_pred             cccCCCCCchh-hHHhhh--hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           42 RIGQGLNEDPR-FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        42 ~~~~~~~~~~~-l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++|+...++. ++.+..  ...++.+|||||||+|.++..+++.  +.+++++|+|+.+++.+++++..
T Consensus        13 ~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~   80 (294)
T PTZ00338         13 KFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQN   80 (294)
T ss_pred             CCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHh
Confidence            44556655544 333332  2357789999999999999999886  45899999999999999987654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.31  E-value=6.9e-06  Score=72.28  Aligned_cols=100  Identities=22%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406           65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE  144 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (290)
                      +++|||+|.|-.++-+|-.+|..+++.+|.....+...+.-+..                                    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~------------------------------------   94 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE------------------------------------   94 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH------------------------------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH------------------------------------
Confidence            89999999999999999999999999999999988888776655                                    


Q ss_pred             HHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          145 KKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                                  .++. ++.+.+....+  ......||+|+++.+.          .+..++.-+..++++||.+++--+
T Consensus        95 ------------L~L~-nv~v~~~R~E~--~~~~~~fd~v~aRAv~----------~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen   95 ------------LGLS-NVEVINGRAEE--PEYRESFDVVTARAVA----------PLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             ------------HT-S-SEEEEES-HHH--TTTTT-EEEEEEESSS----------SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ------------hCCC-CEEEEEeeecc--cccCCCccEEEeehhc----------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence                        3443 57788877766  3456899999999885          456788889999999999999655


Q ss_pred             C
Q 047406          225 P  225 (290)
Q Consensus       225 ~  225 (290)
                      +
T Consensus       150 ~  150 (184)
T PF02527_consen  150 P  150 (184)
T ss_dssp             S
T ss_pred             C
Confidence            3

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.30  E-value=5.9e-06  Score=79.71  Aligned_cols=44  Identities=30%  Similarity=0.566  Sum_probs=39.2

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      +.++||++||+|.+++.++...  .+|+|+|+|+.+++.|+.|+..
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~  250 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAA  250 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHH
Confidence            3579999999999999888763  4899999999999999998876

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.30  E-value=1.2e-05  Score=80.27  Aligned_cols=118  Identities=20%  Similarity=0.211  Sum_probs=82.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..+|.+|||+++++|.=+..+|+.++. ..|++.|+++..++....++...                             
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~-----------------------------  161 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC-----------------------------  161 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Confidence            358899999999999999999998754 48999999999999999998773                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEE----chh--hhh---hhhcCCc-------hHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC----LSV--TKW---IHLNWGD-------DGL  202 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~----~~v--l~~---~~l~~~~-------~~~  202 (290)
                                         ++ .++.+...|...........||.|++    +..  +..   .-..|..       .-+
T Consensus       162 -------------------G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ  221 (470)
T PRK11933        162 -------------------GV-SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQ  221 (470)
T ss_pred             -------------------CC-CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHH
Confidence                               22 23555666654311122357999994    311  100   0001222       234


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeCCC
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      .++|...+++|+|||+|+.++-..
T Consensus       222 ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        222 RELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             HHHHHHHHHHcCCCcEEEEECCCC
Confidence            799999999999999999876543

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.30  E-value=4.8e-06  Score=74.77  Aligned_cols=89  Identities=19%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             eEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE-----EEEeeCCCchhhhhhhh
Q 047406          164 SFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI-----FVLEPQPWVSYEKNRRV  235 (290)
Q Consensus       164 ~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~  235 (290)
                      .+.+.||++. |.   +.+.||+|+|+-||.+++   +..+--+++.++.+.|+|+|.     |++..| ..|.      
T Consensus        86 ~I~qqDFm~r-plp~~~~e~FdvIs~SLVLNfVP---~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP-~~Cv------  154 (219)
T PF11968_consen   86 GILQQDFMER-PLPKNESEKFDVISLSLVLNFVP---DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP-LPCV------  154 (219)
T ss_pred             CceeeccccC-CCCCCcccceeEEEEEEEEeeCC---CHHHHHHHHHHHHHHhCCCCccCcceEEEEeC-chHh------
Confidence            4567788873 33   357899999999997764   234456999999999999999     888654 2232      


Q ss_pred             hhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          236 SETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                              .+.++...+....++...||..++....
T Consensus       155 --------~NSRy~~~~~l~~im~~LGf~~~~~~~~  182 (219)
T PF11968_consen  155 --------TNSRYMTEERLREIMESLGFTRVKYKKS  182 (219)
T ss_pred             --------hcccccCHHHHHHHHHhCCcEEEEEEec
Confidence                    2223333333344899999999887655

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.29  E-value=4e-06  Score=81.55  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +.+|||++||+|..++.++...+..+|+++|+++.+++.++.|+..                                  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----------------------------------  103 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----------------------------------  103 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence            3689999999999999998877656899999999999999999876                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    +++. .+.+...|....+.. ...||+|++..-        +.  ...++......++++|+++++
T Consensus       104 --------------N~~~-~~~v~~~Da~~~l~~-~~~fD~V~lDP~--------Gs--~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        104 --------------NGLE-NEKVFNKDANALLHE-ERKFDVVDIDPF--------GS--PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --------------hCCC-ceEEEhhhHHHHHhh-cCCCCEEEECCC--------CC--cHHHHHHHHHHhcCCCEEEEE
Confidence                          2222 355777776442221 356999996321        11  245677777888999999997


Q ss_pred             eC
Q 047406          223 PQ  224 (290)
Q Consensus       223 ~~  224 (290)
                      ..
T Consensus       158 At  159 (382)
T PRK04338        158 AT  159 (382)
T ss_pred             ec
Confidence            43

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.26  E-value=2.7e-06  Score=80.83  Aligned_cols=133  Identities=22%  Similarity=0.372  Sum_probs=88.8

Q ss_pred             cccccccccc-CCCCCch-h-----hHHh-hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           35 YKNYYGYRIG-QGLNEDP-R-----FKVL-KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        35 ~~~~~~~~~~-~~~~~~~-~-----l~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      |-.||+|... |+..++- |     -.++ ....+.++.|||+|||+|+++...|+. +..+|++++.| ++.+.|++-+
T Consensus       142 YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv  219 (517)
T KOG1500|consen  142 YFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLV  219 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHH
Confidence            5577887764 3333331 1     1112 123467899999999999999886664 66799999985 5778888866


Q ss_pred             HHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEE
Q 047406          107 RKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC  186 (290)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~  186 (290)
                      ..                                                +++.++|.+..+...+ ... ++..|+|++
T Consensus       220 ~~------------------------------------------------N~~~~rItVI~GKiEd-ieL-PEk~DviIS  249 (517)
T KOG1500|consen  220 AS------------------------------------------------NNLADRITVIPGKIED-IEL-PEKVDVIIS  249 (517)
T ss_pred             hc------------------------------------------------CCccceEEEccCcccc-ccC-chhccEEEe
Confidence            54                                                5677889998888765 233 367999998


Q ss_pred             chhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       187 ~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                      -..- ++-.+   +.+....-...+.|+|.|.++=..
T Consensus       250 EPMG-~mL~N---ERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  250 EPMG-YMLVN---ERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             ccch-hhhhh---HHHHHHHHHHHhhcCCCCcccCcc
Confidence            4332 11121   334444445668999999988643

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=2.6e-06  Score=77.31  Aligned_cols=151  Identities=17%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .-..++|||||-|.+...+..+. .-+++-+|-|-.+++.++..                                    
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~------------------------------------  114 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA------------------------------------  114 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc------------------------------------
Confidence            34689999999999999887763 44899999999999888652                                    


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                      +             .+++  .......|-. .+++.+.++|+|+++..+||.      .++...+.+|...|||+|.|+-
T Consensus       115 q-------------dp~i--~~~~~v~DEE-~Ldf~ens~DLiisSlslHW~------NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  115 Q-------------DPSI--ETSYFVGDEE-FLDFKENSVDLIISSLSLHWT------NDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             C-------------CCce--EEEEEecchh-cccccccchhhhhhhhhhhhh------ccCchHHHHHHHhcCCCccchh
Confidence            0             0122  2344444432 256778999999999999998      4678889999999999999987


Q ss_pred             eeCCC-chhhhh--hhhhhhhhcc--ccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPW-VSYEKN--RRVSETTATN--FQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~-~~~~~~--~~~~~~~~~~--~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.-.- .-|+-.  -.+.+.-+..  -+|+. +..-.-.-.+|.++||....+-.+
T Consensus       173 smlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD  228 (325)
T KOG2940|consen  173 SMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD  228 (325)
T ss_pred             HHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence            42111 011111  1111221111  12221 111122233899999998776555

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.25  E-value=6e-06  Score=75.85  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             cCCCCCchh-hHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           44 GQGLNEDPR-FKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        44 ~~~~~~~~~-l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      +|+...++. ++.+...  ..++.+|||||||+|.++..+++.  +.+++++|+++.+++.++.++
T Consensus         8 GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~   71 (258)
T PRK14896          8 GQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDE   71 (258)
T ss_pred             CccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHh
Confidence            444455544 3333332  357789999999999999999987  458999999999999988754

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.25  E-value=1.1e-05  Score=72.98  Aligned_cols=116  Identities=18%  Similarity=0.360  Sum_probs=87.0

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      +..+.+. ...++++|||.=+|.-+..+|...|. .+|+++|+++++.+.+...+..                       
T Consensus        65 l~~li~~-~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-----------------------  120 (237)
T KOG1663|consen   65 LQMLIRL-LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-----------------------  120 (237)
T ss_pred             HHHHHHH-hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------------------
Confidence            3334444 46789999999999988888888875 4899999999999999776655                       


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLF  206 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l  206 (290)
                                               .+....|.+.++...+.++     ...+.||+++.         +.+++.-...+
T Consensus       121 -------------------------agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv---------DadK~nY~~y~  166 (237)
T KOG1663|consen  121 -------------------------AGVDHKITFIEGPALESLDELLADGESGTFDFAFV---------DADKDNYSNYY  166 (237)
T ss_pred             -------------------------ccccceeeeeecchhhhHHHHHhcCCCCceeEEEE---------ccchHHHHHHH
Confidence                                     3455678888887766422     14588999994         33344556889


Q ss_pred             HHHHhhcCCCcEEEEeeCCC
Q 047406          207 MRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~  226 (290)
                      .++.+++++||++++.---|
T Consensus       167 e~~l~Llr~GGvi~~DNvl~  186 (237)
T KOG1663|consen  167 ERLLRLLRVGGVIVVDNVLW  186 (237)
T ss_pred             HHHHhhcccccEEEEecccc
Confidence            99999999999999954333

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=9.6e-06  Score=80.08  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=79.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +++++||+=||.|.+++.+|+.  ..+|+|+|+++++++.|+.++..                                 
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~---------------------------------  337 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA---------------------------------  337 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH---------------------------------
Confidence            5689999999999999999975  55999999999999999999886                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                     +++.+ +.|...+..+..+..  ...+|.|+.         |-...++..-+.+....++|..++
T Consensus       338 ---------------n~i~N-~~f~~~~ae~~~~~~~~~~~~d~Vvv---------DPPR~G~~~~~lk~l~~~~p~~Iv  392 (432)
T COG2265         338 ---------------NGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVV---------DPPRAGADREVLKQLAKLKPKRIV  392 (432)
T ss_pred             ---------------cCCCc-EEEEeCCHHHHhhhccccCCCCEEEE---------CCCCCCCCHHHHHHHHhcCCCcEE
Confidence                           45544 888888876643332  257899995         223345554444555667899999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++++.
T Consensus       393 YVSCN  397 (432)
T COG2265         393 YVSCN  397 (432)
T ss_pred             EEeCC
Confidence            99865

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.24  E-value=9.2e-06  Score=72.75  Aligned_cols=114  Identities=15%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +....|.|+|||.+.++..+..   ...|...|+-+.                                           
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-------------------------------------------  104 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-------------------------------------------  104 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------------------------------------------
T ss_pred             CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------------------------------------------
Confidence            5567999999999998755432   246999998430                                           


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                           +-.+..+|+.+ .|.+++..|++++.-.|  +.     -+...++.+.+|+|+|||.|.
T Consensus       105 ---------------------n~~Vtacdia~-vPL~~~svDv~VfcLSL--MG-----Tn~~~fi~EA~RvLK~~G~L~  155 (219)
T PF05148_consen  105 ---------------------NPRVTACDIAN-VPLEDESVDVAVFCLSL--MG-----TNWPDFIREANRVLKPGGILK  155 (219)
T ss_dssp             ---------------------STTEEES-TTS--S--TT-EEEEEEES-----S-----S-HHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------------CCCEEEecCcc-CcCCCCceeEEEEEhhh--hC-----CCcHHHHHHHHheeccCcEEE
Confidence                                 12255677755 68888999999987666  32     356789999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      |..-               .+.+.    ..+.|.+ .+.+.||+...--
T Consensus       156 IAEV---------------~SRf~----~~~~F~~-~~~~~GF~~~~~d  184 (219)
T PF05148_consen  156 IAEV---------------KSRFE----NVKQFIK-ALKKLGFKLKSKD  184 (219)
T ss_dssp             EEEE---------------GGG-S-----HHHHHH-HHHCTTEEEEEEE
T ss_pred             EEEe---------------cccCc----CHHHHHH-HHHHCCCeEEecc
Confidence            9531               11111    3466777 7899999988643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.24  E-value=4.5e-06  Score=77.32  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++.+|||+|||+|.++..+++..+  +|+|+|+|+.+++.++++
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~   83 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAET   83 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHh
Confidence            5778999999999999999999843  899999999999998764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.24  E-value=1.8e-05  Score=70.80  Aligned_cols=122  Identities=17%  Similarity=0.239  Sum_probs=86.2

Q ss_pred             EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHH
Q 047406           66 CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEK  145 (290)
Q Consensus        66 vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (290)
                      |+||||--|.+++.+.+...+..++++|+++.-++.|+.++..                                     
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-------------------------------------   43 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-------------------------------------   43 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-------------------------------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------------
Confidence            6899999999999999987667899999999999999999887                                     


Q ss_pred             HhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          146 KAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       146 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                                 .++.+.+++..+|.++.++. .+..|.|+...+        |.....+++++....++..-.|++++..
T Consensus        44 -----------~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM--------GG~lI~~ILe~~~~~~~~~~~lILqP~~  103 (205)
T PF04816_consen   44 -----------YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM--------GGELIIEILEAGPEKLSSAKRLILQPNT  103 (205)
T ss_dssp             -----------TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE---------HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred             -----------cCCcccEEEEECCcccccCC-CCCCCEEEEecC--------CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence                       45667899999998774322 223688776444        2355678888888888777789997651


Q ss_pred             CchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          226 WVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                                              .....+.+|.+.||.+++.
T Consensus       104 ------------------------~~~~LR~~L~~~gf~I~~E  122 (205)
T PF04816_consen  104 ------------------------HAYELRRWLYENGFEIIDE  122 (205)
T ss_dssp             -------------------------HHHHHHHHHHTTEEEEEE
T ss_pred             ------------------------ChHHHHHHHHHCCCEEEEe
Confidence                                    1233444788899987744

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.23  E-value=2.8e-06  Score=77.11  Aligned_cols=144  Identities=19%  Similarity=0.314  Sum_probs=96.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|.+|||..+|-|..++..+++ ++..|+.++.+|+.++.|.-|-+.                                
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwS--------------------------------  179 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWS--------------------------------  179 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCC--------------------------------
Confidence            46899999999999999886664 566999999999999998876443                                


Q ss_pred             HHHHHHhhhcCCCccccCcC-cceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                      .++. ..+....+|..+.. ..++.+||+|+--.--  +++. +.---+.+.++++++|+|||.
T Consensus       180 ----------------r~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR--fS~A-geLYseefY~El~RiLkrgGr  240 (287)
T COG2521         180 ----------------RELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR--FSLA-GELYSEEFYRELYRILKRGGR  240 (287)
T ss_pred             ----------------ccccccccEEecccHHHHHhcCCccccceEeeCCCc--cchh-hhHhHHHHHHHHHHHcCcCCc
Confidence                            2222 24788888877643 2356789999963211  2111 111126899999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++--.+.             ....|.... .+....+ .|++.||.+|+....
T Consensus       241 lFHYvG~-------------Pg~ryrG~d-~~~gVa~-RLr~vGF~~v~~~~~  278 (287)
T COG2521         241 LFHYVGN-------------PGKRYRGLD-LPKGVAE-RLRRVGFEVVKKVRE  278 (287)
T ss_pred             EEEEeCC-------------CCcccccCC-hhHHHHH-HHHhcCceeeeeehh
Confidence            9984331             011111111 1233334 789999998766543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.20  E-value=9.9e-06  Score=75.78  Aligned_cols=112  Identities=20%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ++||-||.|.|..+..+.+..+..+++.+||++..++.|++.+....                                 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~---------------------------------  124 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS---------------------------------  124 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc---------------------------------
Confidence            69999999999999999998776799999999999999999865410                                 


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i  221 (290)
                                  ......++.....|..+-.......||+|++-..=. .   ...+.+  ..+++.+.++|+++|+++.
T Consensus       125 ------------~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp-~---gp~~~Lft~eFy~~~~~~L~~~Gi~v~  188 (282)
T COG0421         125 ------------GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDP-V---GPAEALFTEEFYEGCRRALKEDGIFVA  188 (282)
T ss_pred             ------------cccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCC-C---CcccccCCHHHHHHHHHhcCCCcEEEE
Confidence                        011135678888887764444445899999743310 0   011111  6899999999999999999


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      +..
T Consensus       189 q~~  191 (282)
T COG0421         189 QAG  191 (282)
T ss_pred             ecC
Confidence            743

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.19  E-value=5e-07  Score=80.70  Aligned_cols=93  Identities=22%  Similarity=0.357  Sum_probs=70.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +..++||+|.|.|.++..++..+.  +|+++++|..+....++.-.                                  
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y----------------------------------  155 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY----------------------------------  155 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC----------------------------------
Confidence            357999999999999999988765  68999999988877665211                                  


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC-CcEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP-GGIFV  220 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp-gG~l~  220 (290)
                                      ++...+     ++.+    .+-+||+|.|.+++..+      .+.-.+++.++.+|.| .|.++
T Consensus       156 ----------------nVl~~~-----ew~~----t~~k~dli~clNlLDRc------~~p~kLL~Di~~vl~psngrvi  204 (288)
T KOG3987|consen  156 ----------------NVLTEI-----EWLQ----TDVKLDLILCLNLLDRC------FDPFKLLEDIHLVLAPSNGRVI  204 (288)
T ss_pred             ----------------ceeeeh-----hhhh----cCceeehHHHHHHHHhh------cChHHHHHHHHHHhccCCCcEE
Confidence                            111112     2221    23469999999999866      4668999999999999 88777


Q ss_pred             E
Q 047406          221 L  221 (290)
Q Consensus       221 i  221 (290)
                      +
T Consensus       205 v  205 (288)
T KOG3987|consen  205 V  205 (288)
T ss_pred             E
Confidence            7

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.17  E-value=3.9e-05  Score=71.35  Aligned_cols=180  Identities=16%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ..+||--|||-|+++..+|..  +..+.|.|.|--|+-...--+...       .....+.-.|++..=+...    +..
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~-------~~~~~~~I~Pf~~~~sn~~----~~~  123 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHC-------SQPNQFTIYPFVHSFSNQK----SRE  123 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHccc-------CCCCcEEEecceecccCCC----CHH
Confidence            479999999999999999997  458999999998876665543221       0111222224443222111    111


Q ss_pred             HHHHhhhcCCCc----cccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          143 EEKKAISRNCSP----AERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       143 ~~~~~~~~~~~~----~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                      +  -.++..+-+    .......++....+||.+....+  .+.||+|++.+-+.      ....+.+.++.|.++||||
T Consensus       124 d--qlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID------TA~Ni~~Yi~tI~~lLkpg  195 (270)
T PF07942_consen  124 D--QLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID------TAENIIEYIETIEHLLKPG  195 (270)
T ss_pred             H--hCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee------chHHHHHHHHHHHHHhccC
Confidence            1  011111111    11222457889999998854443  47999999875542      2366789999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      | +.|..+|..--..  ...   ..+-..+.+.-++..+ ++++.||++++.-.
T Consensus       196 G-~WIN~GPLlyh~~--~~~---~~~~~sveLs~eEi~~-l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  196 G-YWINFGPLLYHFE--PMS---IPNEMSVELSLEEIKE-LIEKLGFEIEKEES  242 (270)
T ss_pred             C-EEEecCCccccCC--CCC---CCCCcccCCCHHHHHH-HHHHCCCEEEEEEE
Confidence            9 5555554321000  000   0011125677777777 78899999886533

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.16  E-value=9.9e-06  Score=77.90  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=39.5

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      +.++||++||+|.+++.++...  .+|+|+|+++.+++.|++++..
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~  241 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA  241 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH
Confidence            4579999999999999988874  4899999999999999998876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04148 hypothetical protein; Provisional

Probab=98.14  E-value=2.3e-05  Score=65.69  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=65.2

Q ss_pred             CCCcEEEecCCCCh-hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGI-ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~-~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ++.+++|||||+|. ++..|++.  +..|+++|+++.+++.++..                                   
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------------------------------   58 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------------------------------   58 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------------------------------
Confidence            45789999999996 88777764  45999999999998888663                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                           .+.+...|+.+.....-..+|+|++...-         .++..-+.++.+.+  |.-++
T Consensus        59 ---------------------~~~~v~dDlf~p~~~~y~~a~liysirpp---------~el~~~~~~la~~~--~~~~~  106 (134)
T PRK04148         59 ---------------------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP---------RDLQPFILELAKKI--NVPLI  106 (134)
T ss_pred             ---------------------CCeEEECcCCCCCHHHHhcCCEEEEeCCC---------HHHHHHHHHHHHHc--CCCEE
Confidence                                 25678888876433334679999986543         45555555555544  44456


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +.+
T Consensus       107 i~~  109 (134)
T PRK04148        107 IKP  109 (134)
T ss_pred             EEc
Confidence            643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.14  E-value=9.4e-06  Score=74.37  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||-|.|..+..+.+..+..+|+++|+++.+++.|++.+.....                             
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~-----------------------------  125 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE-----------------------------  125 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-----------------------------
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-----------------------------
Confidence            467999999999999999988765456999999999999999997654110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC-ceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK-YYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG  217 (290)
                                      .--..++.+...|....+..... .||+|+.-..-...    ....  -..+++.+.++|+|||
T Consensus       126 ----------------~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~----~~~~l~t~ef~~~~~~~L~~~G  185 (246)
T PF01564_consen  126 ----------------GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDG----PAPNLFTREFYQLCKRRLKPDG  185 (246)
T ss_dssp             ----------------TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTS----CGGGGSSHHHHHHHHHHEEEEE
T ss_pred             ----------------ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCC----CcccccCHHHHHHHHhhcCCCc
Confidence                            01123688888887663333334 89999973221000    0111  2688999999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      ++++..
T Consensus       186 v~v~~~  191 (246)
T PF01564_consen  186 VLVLQA  191 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999964

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.13  E-value=5e-06  Score=71.84  Aligned_cols=74  Identities=26%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..|+|+.||.|..++++|+.+  .+|+++|+++..++.|+.|++.                                   
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~v-----------------------------------   43 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEV-----------------------------------   43 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-----------------------------------
T ss_pred             CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHH-----------------------------------
Confidence            369999999999999999984  4899999999999999999876                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCC-CCC-ceeEEEEc
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEK-YYDAILCL  187 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~-~fD~I~~~  187 (290)
                                   .+..++|.+..+|+.+.... ... .+|+|++.
T Consensus        44 -------------YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen   44 -------------YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             -------------TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             -------------cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence                         44456799999999874222 111 28999984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.12  E-value=3.5e-05  Score=70.39  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=38.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .++.+|||+|||+|.++..+++..+  .++++|+|+.+++.++.+.
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~   71 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLL   71 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHh
Confidence            5678999999999999999998853  6999999999999887643

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.12  E-value=2.6e-05  Score=68.72  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      .++.+...+|.++||+-+|||++++..+.+ ++.+++.+|.|..++...++|+..                         
T Consensus        35 Nil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~-------------------------   88 (187)
T COG0742          35 NILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKA-------------------------   88 (187)
T ss_pred             HhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHH-------------------------
Confidence            344331367899999999999999996665 566999999999999999999876                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC--ceeEEEEchhhhhhhhcCCchHH--HHHHHH-
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK--YYDAILCLSVTKWIHLNWGDDGL--ITLFMR-  208 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~-  208 (290)
                                             .++.....+...|....+.....  +||+|+.-.-.       .....  ...+.. 
T Consensus        89 -----------------------l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy-------~~~l~~~~~~~~~~  138 (187)
T COG0742          89 -----------------------LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY-------AKGLLDKELALLLL  138 (187)
T ss_pred             -----------------------hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC-------ccchhhHHHHHHHH
Confidence                                   22334466666666543222333  49999964332       21222  222233 


Q ss_pred             -HHhhcCCCcEEEEeeC
Q 047406          209 -IWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       209 -~~~~LkpgG~l~i~~~  224 (290)
                       -...|+|+|.++++..
T Consensus       139 ~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         139 EENGWLKPGALIVVEHD  155 (187)
T ss_pred             HhcCCcCCCcEEEEEeC
Confidence             3466999999999865

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.10  E-value=1.9e-05  Score=79.47  Aligned_cols=114  Identities=20%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+..+||||||.|.++..+|..+|...++|+|++...+..+...+..                                 
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~---------------------------------  393 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE---------------------------------  393 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---------------------------------
Confidence            35789999999999999999999999999999999988888775543                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGI  218 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~  218 (290)
                                     .++ .++.+...|+... ...+.+++|.|+.++-=-|..-...+.-  ...++..+.+.|+|||.
T Consensus       394 ---------------~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~  457 (506)
T PRK01544        394 ---------------QNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN  457 (506)
T ss_pred             ---------------cCC-CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence                           233 2455555554321 1235678999998765444211000111  15889999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +.+.+.
T Consensus       458 i~~~TD  463 (506)
T PRK01544        458 LVFASD  463 (506)
T ss_pred             EEEEcC
Confidence            999654

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.06  E-value=9.1e-06  Score=78.54  Aligned_cols=109  Identities=24%  Similarity=0.415  Sum_probs=88.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      -...++..++|+|||.|.....++- +....++|+|.++..+..+......                             
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~-----------------------------  155 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKK-----------------------------  155 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHH-----------------------------
Confidence            3346778999999999999998876 4556899999999988888776654                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         ..+.+...+...|+.+ .++++..||.+.++.+.+|.      .....++.++++.++|||
T Consensus       156 -------------------~~l~~k~~~~~~~~~~-~~fedn~fd~v~~ld~~~~~------~~~~~~y~Ei~rv~kpGG  209 (364)
T KOG1269|consen  156 -------------------AYLDNKCNFVVADFGK-MPFEDNTFDGVRFLEVVCHA------PDLEKVYAEIYRVLKPGG  209 (364)
T ss_pred             -------------------HHhhhhcceehhhhhc-CCCCccccCcEEEEeecccC------CcHHHHHHHHhcccCCCc
Confidence                               2334456667778877 47888999999999999544      578999999999999999


Q ss_pred             EEEEe
Q 047406          218 IFVLE  222 (290)
Q Consensus       218 ~l~i~  222 (290)
                      +++..
T Consensus       210 ~~i~~  214 (364)
T KOG1269|consen  210 LFIVK  214 (364)
T ss_pred             eEEeH
Confidence            99994

>PRK00536 speE spermidine synthase; Provisional

Probab=98.04  E-value=3.3e-05  Score=71.58  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||=||.|.|..+..+.+. +. +|+.+|||+.+++.+++++..+..                             
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~-----------------------------  119 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHE-----------------------------  119 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHH-----------------------------
Confidence            46689999999999999999886 43 999999999999999997665210                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                  .+.    ..++.+.. .+.+   ...++||+|++-...           -...++.+.+.|+|||+++
T Consensus       120 ------------~~~----DpRv~l~~-~~~~---~~~~~fDVIIvDs~~-----------~~~fy~~~~~~L~~~Gi~v  168 (262)
T PRK00536        120 ------------VKN----NKNFTHAK-QLLD---LDIKKYDLIICLQEP-----------DIHKIDGLKRMLKEDGVFI  168 (262)
T ss_pred             ------------hhc----CCCEEEee-hhhh---ccCCcCCEEEEcCCC-----------ChHHHHHHHHhcCCCcEEE
Confidence                        000    11233332 1211   123689999974221           1467788999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      .+..
T Consensus       169 ~Qs~  172 (262)
T PRK00536        169 SVAK  172 (262)
T ss_pred             ECCC
Confidence            9543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.03  E-value=3.3e-05  Score=72.26  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-------CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-------NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-------~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      .++.+|+|.+||+|.+...+....       ...+++|+|+++.++..|..++..++.                      
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~----------------------  102 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI----------------------  102 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH----------------------
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc----------------------
Confidence            456789999999999988876632       456899999999999999887654210                      


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhh---hhh--h----cC------
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTK---WIH--L----NW------  197 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~---~~~--l----~~------  197 (290)
                                               -.....+...|........ ...||+|+++.-.-   |..  +    .|      
T Consensus       103 -------------------------~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~  157 (311)
T PF02384_consen  103 -------------------------DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPP  157 (311)
T ss_dssp             -------------------------HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSS
T ss_pred             -------------------------ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCC
Confidence                                     0112345666655432222 47899999963221   100  0    00      


Q ss_pred             CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          198 GDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ....-..++..+.+.|++||.+++..+
T Consensus       158 ~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  158 KSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             TTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccchhhhhHHHHHhhcccccceeEEec
Confidence            011223577889999999999877544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=7.9e-06  Score=69.41  Aligned_cols=47  Identities=30%  Similarity=0.540  Sum_probs=40.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|+.++|+|||.|-++...+. +....|+|+||+|++++.+..|+..
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeE   93 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEE   93 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHH
Confidence            5899999999999999865444 4566899999999999999998765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.01  E-value=6.3e-05  Score=78.53  Aligned_cols=116  Identities=21%  Similarity=0.271  Sum_probs=77.9

Q ss_pred             hc-cCCCcEEEecCCCChhhHHHHhHc------------C------------------------------CceEEEEeCC
Q 047406           59 EW-FEGKDCLDIGCNSGIITIQIAQKF------------N------------------------------CRSILGIDID   95 (290)
Q Consensus        59 ~~-~~~~~vLDiGcG~G~~~~~la~~~------------~------------------------------~~~i~g~Dis   95 (290)
                      .| .++..++|.+||+|.+.+..|...            +                              ...|+|+|++
T Consensus       186 ~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did  265 (702)
T PRK11783        186 GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDID  265 (702)
T ss_pred             CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECC
Confidence            45 567899999999999988876521            0                              1269999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-
Q 047406           96 SNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-  174 (290)
Q Consensus        96 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-  174 (290)
                      +.+++.|+.|+..                                                .++.+.+.+.+.|+.+.. 
T Consensus       266 ~~av~~A~~N~~~------------------------------------------------~g~~~~i~~~~~D~~~~~~  297 (702)
T PRK11783        266 PRVIQAARKNARR------------------------------------------------AGVAELITFEVKDVADLKN  297 (702)
T ss_pred             HHHHHHHHHHHHH------------------------------------------------cCCCcceEEEeCChhhccc
Confidence            9999999999887                                                445556889999987631 


Q ss_pred             CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC---CCcEEEEeeC
Q 047406          175 DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR---PGGIFVLEPQ  224 (290)
Q Consensus       175 ~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~  224 (290)
                      +...++||+|+|+.-.  ..--....++..++..+...++   +|+.+++-.+
T Consensus       298 ~~~~~~~d~IvtNPPY--g~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        298 PLPKGPTGLVISNPPY--GERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             ccccCCCCEEEECCCC--cCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            1123579999997332  1000122344555555444444   8888877443

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.99  E-value=0.00014  Score=73.33  Aligned_cols=47  Identities=21%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC--------CceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN--------CRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~--------~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ...+|||.+||+|.+...++...+        ...++|+|+++.++..++.++..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~   85 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE   85 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence            346999999999999988877653        14789999999999999988755

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.97  E-value=6.8e-05  Score=69.17  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             eEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccc
Q 047406          164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNF  243 (290)
Q Consensus       164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~  243 (290)
                      .+..+|+.+ .|.++++.|++++.-.|  +.     .++..++.++.++|+|||.++|..-               .+.|
T Consensus       213 ~V~~cDm~~-vPl~d~svDvaV~CLSL--Mg-----tn~~df~kEa~RiLk~gG~l~IAEv---------------~SRf  269 (325)
T KOG3045|consen  213 RVIACDMRN-VPLEDESVDVAVFCLSL--MG-----TNLADFIKEANRILKPGGLLYIAEV---------------KSRF  269 (325)
T ss_pred             ceeeccccC-CcCccCcccEEEeeHhh--hc-----ccHHHHHHHHHHHhccCceEEEEeh---------------hhhc
Confidence            456677776 68888999998876555  32     4678999999999999999999431               1112


Q ss_pred             cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          244 QNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       244 ~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ..    -..|.+ .+.+.||.+.+....
T Consensus       270 ~d----v~~f~r-~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  270 SD----VKGFVR-ALTKLGFDVKHKDVS  292 (325)
T ss_pred             cc----HHHHHH-HHHHcCCeeeehhhh
Confidence            11    133666 789999998766554

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=0.00012  Score=65.96  Aligned_cols=99  Identities=22%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +.+++|||+|.|-.++-+|-.+|..+++-+|-....+...+.-...                                  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e----------------------------------  113 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE----------------------------------  113 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----------------------------------
Confidence            6899999999999999999888988999999988887777664443                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                    .++ +++.+.+....+..+.... ||+|.|+.+.          .+..+++-+..++++||.++.
T Consensus       114 --------------L~L-~nv~i~~~RaE~~~~~~~~-~D~vtsRAva----------~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         114 --------------LGL-ENVEIVHGRAEEFGQEKKQ-YDVVTSRAVA----------SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             --------------hCC-CCeEEehhhHhhccccccc-CcEEEeehcc----------chHHHHHHHHHhcccCCcchh
Confidence                          333 2477777766553222112 9999998874          467788889999999998765

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.94  E-value=7.1e-05  Score=66.93  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=67.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++...+|||||.|....+.|...++...+|+|+.+...+.|.......-..       ...       .         
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~-------~~~-------~---------   96 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR-------MKH-------Y---------   96 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH-------HHH-------C---------
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH-------HHH-------h---------
Confidence            45788999999999999999888888878999999999998888766542110       000       0         


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       ..-...+.+.++|+.+.-  ...-...|+|++++.+  +     ++++..-+.+....|++|-
T Consensus        97 -----------------g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F-----~~~l~~~L~~~~~~lk~G~  152 (205)
T PF08123_consen   97 -----------------GKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--F-----DPDLNLALAELLLELKPGA  152 (205)
T ss_dssp             -----------------TB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T------HHHHHHHHHHHTTS-TT-
T ss_pred             -----------------hcccccceeeccCccccHhHhhhhcCCCEEEEeccc--c-----CHHHHHHHHHHHhcCCCCC
Confidence                             001235778888887620  0001346999999886  2     2455555577778888876


Q ss_pred             EEEE
Q 047406          218 IFVL  221 (290)
Q Consensus       218 ~l~i  221 (290)
                      .++-
T Consensus       153 ~IIs  156 (205)
T PF08123_consen  153 RIIS  156 (205)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.94  E-value=0.00016  Score=68.82  Aligned_cols=117  Identities=12%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      |...+.++.+++|+|||+|.-+..|...+.    ...++++|+|.+.|+.+...+..                       
T Consensus        70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-----------------------  126 (319)
T TIGR03439        70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-----------------------  126 (319)
T ss_pred             HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-----------------------
Confidence            344456788999999999987666555442    35799999999999999887762                       


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcC-cceeEeecccccC---CCC--CCCceeEEEEchhhhhhhhcCCchHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHG---RDS--PEKYYDAILCLSVTKWIHLNWGDDGLITL  205 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~---~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~  205 (290)
                                               .... -.+.-..+|+.+.   ++.  ......+++.....  +. |+..+....+
T Consensus       127 -------------------------~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSs--iG-Nf~~~ea~~f  178 (319)
T TIGR03439       127 -------------------------GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSS--IG-NFSRPEAAAF  178 (319)
T ss_pred             -------------------------ccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCcc--cc-CCCHHHHHHH
Confidence                                     0111 1245577777653   111  12346777776543  22 4566788899


Q ss_pred             HHHHHh-hcCCCcEEEEee
Q 047406          206 FMRIWK-LLRPGGIFVLEP  223 (290)
Q Consensus       206 l~~~~~-~LkpgG~l~i~~  223 (290)
                      |+++.+ .|+|||.|++..
T Consensus       179 L~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       179 LAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             HHHHHHhhCCCCCEEEEec
Confidence            999999 999999999954

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.93  E-value=5.4e-05  Score=72.51  Aligned_cols=105  Identities=21%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ....+|.+|+|.-+|-|.+++.+|.. +..+|+++|++|.+++..++|++.                             
T Consensus       184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~L-----------------------------  233 (341)
T COG2520         184 ELVKEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRL-----------------------------  233 (341)
T ss_pred             hhhcCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHh-----------------------------
Confidence            33467999999999999999998886 444599999999999999999987                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         +.+...+....+|..... ...+.+|-|++....          .....+....+++++||
T Consensus       234 -------------------N~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p~----------~a~~fl~~A~~~~k~~g  283 (341)
T COG2520         234 -------------------NKVEGRVEPILGDAREVA-PELGVADRIIMGLPK----------SAHEFLPLALELLKDGG  283 (341)
T ss_pred             -------------------cCccceeeEEeccHHHhh-hccccCCEEEeCCCC----------cchhhHHHHHHHhhcCc
Confidence                               555566889999987742 222789999975442          33566777888899999


Q ss_pred             EEEEe
Q 047406          218 IFVLE  222 (290)
Q Consensus       218 ~l~i~  222 (290)
                      ++-+.
T Consensus       284 ~iHyy  288 (341)
T COG2520         284 IIHYY  288 (341)
T ss_pred             EEEEE
Confidence            88884

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=8e-05  Score=67.82  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=96.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|+++|.++-.+.++ ++..|+|+|..-..+.+-..+                                   
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~-----------------------------------  121 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN-----------------------------------  121 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc-----------------------------------
Confidence            68899999999999999998875 566999999988777665432                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                        -.+.+.+...|++...+. -.+..|+++|--..  +       .+..+|..+..+++|++.+
T Consensus       122 ------------------d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF--I-------SL~~iLp~l~~l~~~~~~~  174 (245)
T COG1189         122 ------------------DPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF--I-------SLKLILPALLLLLKDGGDL  174 (245)
T ss_pred             ------------------CCcEEEEecCChhhCCHHHcccCCCeEEEEeeh--h-------hHHHHHHHHHHhcCCCceE
Confidence                              122356666676653221 12478999984433  2       3578899999999999888


Q ss_pred             EEeeCCCchhhhhhhhhh---hhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCcceeeec
Q 047406          220 VLEPQPWVSYEKNRRVSE---TTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFR  289 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~  289 (290)
                      +.-.-|  .++-.+..-.   ..+. .......-..+.. ++...||.+..++.+  +-....|-...+..++
T Consensus       175 v~LvKP--QFEagr~~v~kkGvv~d-~~~~~~v~~~i~~-~~~~~g~~~~gl~~S--pi~G~~GNiE~l~~~~  241 (245)
T COG1189         175 VLLVKP--QFEAGREQVGKKGVVRD-PKLHAEVLSKIEN-FAKELGFQVKGLIKS--PIKGGKGNIEFLLLLK  241 (245)
T ss_pred             EEEecc--hhhhhhhhcCcCceecC-cchHHHHHHHHHH-HHhhcCcEEeeeEcc--CccCCCCcEeeeeeee
Confidence            773211  1111111110   0000 0000111123333 667789999999988  4444444233444443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.93  E-value=3.1e-05  Score=68.64  Aligned_cols=117  Identities=21%  Similarity=0.295  Sum_probs=83.8

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      +++..|++|||+|+|+|..++..+. .+...|+++|++|...+...-|+..                             
T Consensus        75 PetVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~a-----------------------------  124 (218)
T COG3897          75 PETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAA-----------------------------  124 (218)
T ss_pred             ccccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhh-----------------------------
Confidence            4567899999999999999887554 4566899999998887777766554                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         ++.  .+.+...|...    .+..+|+|+...+.      ++..-..+++. +...+...|
T Consensus       125 -------------------ngv--~i~~~~~d~~g----~~~~~Dl~LagDlf------y~~~~a~~l~~-~~~~l~~~g  172 (218)
T COG3897         125 -------------------NGV--SILFTHADLIG----SPPAFDLLLAGDLF------YNHTEADRLIP-WKDRLAEAG  172 (218)
T ss_pred             -------------------ccc--eeEEeeccccC----CCcceeEEEeecee------cCchHHHHHHH-HHHHHHhCC
Confidence                               221  47777777643    45779999998775      22333344444 777777788


Q ss_pred             EEEEeeCCCchhhhhhhhh
Q 047406          218 IFVLEPQPWVSYEKNRRVS  236 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~  236 (290)
                      ..++...|++.+....++.
T Consensus       173 ~~vlvgdp~R~~lpk~~l~  191 (218)
T COG3897         173 AAVLVGDPGRAYLPKKRLE  191 (218)
T ss_pred             CEEEEeCCCCCCCchhhhh
Confidence            8888888888776655543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.92  E-value=0.00012  Score=70.81  Aligned_cols=117  Identities=23%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCC--------------------------------c-------eEEEEeCCH
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNC--------------------------------R-------SILGIDIDS   96 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------~-------~i~g~Dis~   96 (290)
                      ..+.|.++..++|.-||+|.+++..|....+                                .       .++|+|+|+
T Consensus       185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            4566888899999999999999998776531                                1       277999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC
Q 047406           97 NRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS  176 (290)
Q Consensus        97 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  176 (290)
                      .+++.|+.|++.                                                .++.+.|.|.+.|+.. +..
T Consensus       265 r~i~~Ak~NA~~------------------------------------------------AGv~d~I~f~~~d~~~-l~~  295 (381)
T COG0116         265 RHIEGAKANARA------------------------------------------------AGVGDLIEFKQADATD-LKE  295 (381)
T ss_pred             HHHHHHHHHHHh------------------------------------------------cCCCceEEEEEcchhh-CCC
Confidence            999999999987                                                5567789999999976 333


Q ss_pred             CCCceeEEEEchhhhhhhhcCCchH-H----HHHHHHHHhhcCCCcEEEEeeC
Q 047406          177 PEKYYDAILCLSVTKWIHLNWGDDG-L----ITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       177 ~~~~fD~I~~~~vl~~~~l~~~~~~-~----~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      +...+|+|+|+.---   .-.+.+. .    ..+...+.+.++-.+.+++...
T Consensus       296 ~~~~~gvvI~NPPYG---eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         296 PLEEYGVVISNPPYG---ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             CCCcCCEEEeCCCcc---hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            337899999963321   0112221 2    2333445566677777777543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.91  E-value=4.7e-05  Score=65.67  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSN   97 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~   97 (290)
                      .+.+|||+||++|.++..++++. +...|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            34899999999999999988875 3469999999764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.91  E-value=9.2e-05  Score=71.91  Aligned_cols=101  Identities=14%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             CcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      .+|||+.||+|..++.++.+. +..+|+++|+++.+++.++.|+..                                  
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----------------------------------   91 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----------------------------------   91 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence            589999999999999999874 346899999999999999999876                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    +++ .++.+...|....+......||+|..-.        ++  ....++..+.+.++++|++++.
T Consensus        92 --------------N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP--------fG--s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        92 --------------NSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP--------FG--TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             --------------hCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC--------CC--CcHHHHHHHHHhcccCCEEEEE
Confidence                          222 1366777776553222235799998532        12  1246788889999999999997


Q ss_pred             e
Q 047406          223 P  223 (290)
Q Consensus       223 ~  223 (290)
                      .
T Consensus       147 a  147 (374)
T TIGR00308       147 A  147 (374)
T ss_pred             e
Confidence            4

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.88  E-value=0.00035  Score=63.01  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      .|+..+...+..+.+++||||--|.++..+.+..++..+++.|+++.-++.|..++..                      
T Consensus         5 ~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~----------------------   62 (226)
T COG2384           5 KRLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK----------------------   62 (226)
T ss_pred             HHHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh----------------------
Confidence            5677777788889999999999999999999988888999999999999999998876                      


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                                .++.+.++...+|....+ .+++.+|+|+...+        |......++++-.
T Consensus        63 --------------------------~~l~~~i~vr~~dgl~~l-~~~d~~d~ivIAGM--------GG~lI~~ILee~~  107 (226)
T COG2384          63 --------------------------NNLSERIDVRLGDGLAVL-ELEDEIDVIVIAGM--------GGTLIREILEEGK  107 (226)
T ss_pred             --------------------------cCCcceEEEeccCCcccc-CccCCcCEEEEeCC--------cHHHHHHHHHHhh
Confidence                                      567777888888886532 23457898886433        2345578888888


Q ss_pred             hhcCCCcEEEEeeC
Q 047406          211 KLLRPGGIFVLEPQ  224 (290)
Q Consensus       211 ~~LkpgG~l~i~~~  224 (290)
                      +-|+.=-.+++++.
T Consensus       108 ~~l~~~~rlILQPn  121 (226)
T COG2384         108 EKLKGVERLILQPN  121 (226)
T ss_pred             hhhcCcceEEECCC
Confidence            87775567788654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.86  E-value=7.6e-05  Score=70.34  Aligned_cols=45  Identities=24%  Similarity=0.269  Sum_probs=32.5

Q ss_pred             CCcEEEecCCCChh-hHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGII-TIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        63 ~~~vLDiGcG~G~~-~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..++||||||...+ .+.-++. .+++++|+||++.+++.|+.++..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~  148 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVER  148 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHH
T ss_pred             ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHh
Confidence            56899999998765 4444444 478999999999999999999887

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.85  E-value=0.00015  Score=67.38  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=71.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ...+|||+|||+|..+..+...++ ..+++++|.|+.+++.++.-+...                               
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-------------------------------   81 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-------------------------------   81 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-------------------------------
Confidence            557999999999988777767666 348999999999999888754431                               


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .... ..........+..+.  .+.|+|++.++|  ..+.  +.....+++++++.+.+ =+++
T Consensus        82 ----------------~~~~-~~~~~~~~~~~~~~~--~~~DLvi~s~~L--~EL~--~~~r~~lv~~LW~~~~~-~LVl  137 (274)
T PF09243_consen   82 ----------------PNNR-NAEWRRVLYRDFLPF--PPDDLVIASYVL--NELP--SAARAELVRSLWNKTAP-VLVL  137 (274)
T ss_pred             ----------------cccc-cchhhhhhhcccccC--CCCcEEEEehhh--hcCC--chHHHHHHHHHHHhccC-cEEE
Confidence                            0000 000000011111111  234999999999  4443  36678999999998877 4444


Q ss_pred             EeeCCCchh
Q 047406          221 LEPQPWVSY  229 (290)
Q Consensus       221 i~~~~~~~~  229 (290)
                      ++++.-..+
T Consensus       138 VEpGt~~Gf  146 (274)
T PF09243_consen  138 VEPGTPAGF  146 (274)
T ss_pred             EcCCChHHH
Confidence            455543333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.0004  Score=66.95  Aligned_cols=116  Identities=21%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+|.+|||+.+++|.=+.++|+.+.+  ..|+++|+|+..++..+.++...                             
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-----------------------------  205 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-----------------------------  205 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-----------------------------
Confidence            58899999999999999999998864  34699999999999999998873                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCC-CCceeEEEEc------hhh------hhhh----hcCCch
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSP-EKYYDAILCL------SVT------KWIH----LNWGDD  200 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~-~~~fD~I~~~------~vl------~~~~----l~~~~~  200 (290)
                                         ++.. +.....|..... ..+ .++||.|++-      .++      .|--    +..-..
T Consensus       206 -------------------G~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~  265 (355)
T COG0144         206 -------------------GVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAK  265 (355)
T ss_pred             -------------------CCCc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHH
Confidence                               2322 445555543211 112 2359999982      121      1110    000013


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          201 GLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      -+.++|...+++|+|||.|+.++-.
T Consensus       266 lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         266 LQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEccC
Confidence            3579999999999999999997653

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00049  Score=61.54  Aligned_cols=100  Identities=20%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|+|+|+.+|.++..+++..+. ..|+|+|+.|                                          
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p------------------------------------------   80 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP------------------------------------------   80 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc------------------------------------------
Confidence            467899999999999999998887664 3599999976                                          


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC-------CCCCCCceeEEEEchh--------hhhhhhcCCchHHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-------RDSPEKYYDAILCLSV--------TKWIHLNWGDDGLI  203 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~fD~I~~~~v--------l~~~~l~~~~~~~~  203 (290)
                                        ......+.+.+.|+.+.       ......++|+|+|-..        .++...   .....
T Consensus        81 ------------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~---~~L~~  139 (205)
T COG0293          81 ------------------MKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARS---MYLCE  139 (205)
T ss_pred             ------------------cccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHH---HHHHH
Confidence                              22233488889998773       1113345799998211        111100   12224


Q ss_pred             HHHHHHHhhcCCCcEEEEe
Q 047406          204 TLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~  222 (290)
                      ..+.-....|+|||.+++.
T Consensus       140 ~a~~~a~~vL~~~G~fv~K  158 (205)
T COG0293         140 LALEFALEVLKPGGSFVAK  158 (205)
T ss_pred             HHHHHHHHeeCCCCeEEEE
Confidence            5666677899999999994

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.78  E-value=3.5e-05  Score=72.60  Aligned_cols=46  Identities=20%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .++..++|.+||.|.++..++...+ ...|+|+|.|+.+++.|++.+
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L   64 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL   64 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence            4678999999999999999999875 568999999999999998754

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.77  E-value=0.00066  Score=51.92  Aligned_cols=103  Identities=21%  Similarity=0.341  Sum_probs=66.1

Q ss_pred             EEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406           66 CLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE  144 (290)
Q Consensus        66 vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (290)
                      ++|+|||+|... .++...+. ..++++|+++.++..+......                                    
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------   94 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG------------------------------------   94 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh------------------------------------
Confidence            999999999876 33443332 3788999999998884332210                                    


Q ss_pred             HHhhhcCCCccccCcCcceeEeeccccc-CCCCCC-CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          145 KKAISRNCSPAERNLFDIVSFKQENFVH-GRDSPE-KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~-~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                   .....+.+...+... ..+... ..||++.+....+|.      . ....+..+.+.++|+|.+++.
T Consensus        95 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~-~~~~~~~~~~~l~~~g~~~~~  154 (257)
T COG0500          95 -------------AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL------P-PAKALRELLRVLKPGGRLVLS  154 (257)
T ss_pred             -------------cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcC------C-HHHHHHHHHHhcCCCcEEEEE
Confidence                         000004566666544 134444 479999433333222      1 688999999999999999996


Q ss_pred             eCC
Q 047406          223 PQP  225 (290)
Q Consensus       223 ~~~  225 (290)
                      ...
T Consensus       155 ~~~  157 (257)
T COG0500         155 DLL  157 (257)
T ss_pred             ecc
Confidence            543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.72  E-value=0.00022  Score=68.65  Aligned_cols=43  Identities=28%  Similarity=0.553  Sum_probs=37.5

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++||+-||.|.+++.+|..  ..+|+|+|+++.+++.|+.++..
T Consensus       198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~  240 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL  240 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH
Confidence            38999999999999999987  45899999999999999999876

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.66  E-value=6.9e-05  Score=69.80  Aligned_cols=109  Identities=19%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             CchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           49 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        49 ~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      ..|+...+......+..++|+|||.|-.+..    .|...+.|+|++...+..++..                       
T Consensus        32 ~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~-----------------------   84 (293)
T KOG1331|consen   32 PWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS-----------------------   84 (293)
T ss_pred             ccHHHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC-----------------------
Confidence            3366666666667899999999999976432    3556899999998777766541                       


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcce-eEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIV-SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM  207 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~  207 (290)
                                                       +. .....|.++ +|..+.+||.+++..++||+.-   ..--..+++
T Consensus        85 ---------------------------------~~~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT---~~RR~~~l~  127 (293)
T KOG1331|consen   85 ---------------------------------GGDNVCRADALK-LPFREESFDAALSIAVIHHLST---RERRERALE  127 (293)
T ss_pred             ---------------------------------CCceeehhhhhc-CCCCCCccccchhhhhhhhhhh---HHHHHHHHH
Confidence                                             12 456667766 6778899999999999998852   233468999


Q ss_pred             HHHhhcCCCcEEEE
Q 047406          208 RIWKLLRPGGIFVL  221 (290)
Q Consensus       208 ~~~~~LkpgG~l~i  221 (290)
                      ++.+.|+|||...+
T Consensus       128 e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  128 ELLRVLRPGGNALV  141 (293)
T ss_pred             HHHHHhcCCCceEE
Confidence            99999999999777

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.62  E-value=0.00062  Score=63.55  Aligned_cols=106  Identities=18%  Similarity=0.195  Sum_probs=63.8

Q ss_pred             CcEEEecCCCChhhH-HHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           64 KDCLDIGCNSGIITI-QIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~-~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+|+=||||+=-++. .+++.. ....|.++|+|+.+++.+++-+..                                 
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~---------------------------------  168 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS---------------------------------  168 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------------------------------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---------------------------------
Confidence            599999999865444 444443 355799999999999999886652                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                    ..++...+.|...|..+. ......||+|+.....     .-..+...+++.++.+.++||..+++
T Consensus       169 --------------~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lAalV-----g~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  169 --------------DLGLSKRMSFITADVLDV-TYDLKEYDVVFLAALV-----GMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             ----------------HH-SSEEEEES-GGGG--GG----SEEEE-TT------S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             --------------cccccCCeEEEecchhcc-ccccccCCEEEEhhhc-----ccccchHHHHHHHHHhhCCCCcEEEE
Confidence                          134566799999998663 2234689999975443     11234678999999999999999999


Q ss_pred             e
Q 047406          222 E  222 (290)
Q Consensus       222 ~  222 (290)
                      .
T Consensus       229 R  229 (276)
T PF03059_consen  229 R  229 (276)
T ss_dssp             E
T ss_pred             e
Confidence            5

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00051  Score=63.56  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=47.5

Q ss_pred             cccCCCCCchh-hHHhhh--hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           42 RIGQGLNEDPR-FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        42 ~~~~~~~~~~~-l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      +++|+...+.. ++.+..  ...++.+|||||+|.|.+|..|++.  +..|+++++|+..++..+...
T Consensus         7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~   72 (259)
T COG0030           7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERF   72 (259)
T ss_pred             CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhc
Confidence            45566666644 232222  2345789999999999999999998  458999999999999888753

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.54  E-value=0.00034  Score=64.97  Aligned_cols=68  Identities=18%  Similarity=0.371  Sum_probs=51.3

Q ss_pred             ccccccCCCCCchhh-HHh--hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           39 YGYRIGQGLNEDPRF-KVL--KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        39 ~~~~~~~~~~~~~~l-~~l--~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      +.-.++|....++.. +.|  .+.+.+...|||+|.|+|.++..|.+.  +..|++++++|.++....+...+
T Consensus        32 fnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~g  102 (315)
T KOG0820|consen   32 FNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQG  102 (315)
T ss_pred             cccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcC
Confidence            344556666666543 222  344578899999999999999999887  56999999999999988876543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.00011  Score=63.45  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..|.+||++|.| +|..++++|...+..+|..+|-++.+++..++.....                              
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n------------------------------   77 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN------------------------------   77 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc------------------------------
Confidence            578899999999 4667777788778889999999999988877754320                              


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecc-cccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQEN-FVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                              +       -..+. .+.+...+ ..+........||.|+|...+  + +   ++.-..+.+.|+.+|+|.|.
T Consensus        78 --------~-------~s~~t-sc~vlrw~~~~aqsq~eq~tFDiIlaADCl--F-f---dE~h~sLvdtIk~lL~p~g~  135 (201)
T KOG3201|consen   78 --------M-------ASSLT-SCCVLRWLIWGAQSQQEQHTFDIILAADCL--F-F---DEHHESLVDTIKSLLRPSGR  135 (201)
T ss_pred             --------c-------ccccc-eehhhHHHHhhhHHHHhhCcccEEEeccch--h-H---HHHHHHHHHHHHHHhCcccc
Confidence                    0       01111 12222222 212222234589999998877  2 1   35567889999999999888


Q ss_pred             EEEe
Q 047406          219 FVLE  222 (290)
Q Consensus       219 l~i~  222 (290)
                      .++.
T Consensus       136 Al~f  139 (201)
T KOG3201|consen  136 ALLF  139 (201)
T ss_pred             eeEe
Confidence            6664

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.52  E-value=0.00051  Score=59.75  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=75.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..|.-|||+|.|+|-++..+..+.- +.+++++++|++-+....+...                                
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------------------------------   94 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------------------------------   94 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------------------------
Confidence            4678999999999999999887653 4589999999999887766322                                


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                            ...+..+|..+.    .......||.|+|.--+    +++..+.-..+++++...|.+
T Consensus        95 ----------------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl----l~~P~~~~iaile~~~~rl~~  148 (194)
T COG3963          95 ----------------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL----LNFPMHRRIAILESLLYRLPA  148 (194)
T ss_pred             ----------------------CccccccchhhHHHHHhhcCCCeeeeEEecccc----ccCcHHHHHHHHHHHHHhcCC
Confidence                                  233444444431    11245679999996444    344556778999999999999


Q ss_pred             CcEEEE
Q 047406          216 GGIFVL  221 (290)
Q Consensus       216 gG~l~i  221 (290)
                      ||.++.
T Consensus       149 gg~lvq  154 (194)
T COG3963         149 GGPLVQ  154 (194)
T ss_pred             CCeEEE
Confidence            999887

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.49  E-value=0.0027  Score=57.53  Aligned_cols=137  Identities=19%  Similarity=0.249  Sum_probs=84.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+||-+|.++|.....++.--+ ...|+|++.|+...+....-...                              
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~------------------------------  120 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK------------------------------  120 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc------------------------------
Confidence            36889999999999988777776654 45899999999877666543332                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           ..+|-..-.|....  +...-+..|+|++-=..        .++.+-++.++...|++|
T Consensus       121 ---------------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ--------p~Qa~I~~~Na~~fLk~g  171 (229)
T PF01269_consen  121 ---------------------RPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQ--------PDQARIAALNARHFLKPG  171 (229)
T ss_dssp             ---------------------STTEEEEES-TTSGGGGTTTS--EEEEEEE-SS--------TTHHHHHHHHHHHHEEEE
T ss_pred             ---------------------CCceeeeeccCCChHHhhcccccccEEEecCCC--------hHHHHHHHHHHHhhccCC
Confidence                                 23566777777652  11123589999973221        255567778888999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchh-HHH--HHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKE-FQE--ILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ll~~~Gf~~v~~~~~  271 (290)
                      |.+++..-       ++....         .-.+++ |.+  ..|++.||++.+.+.-
T Consensus       172 G~~~i~iK-------a~siD~---------t~~p~~vf~~e~~~L~~~~~~~~e~i~L  213 (229)
T PF01269_consen  172 GHLIISIK-------ARSIDS---------TADPEEVFAEEVKKLKEEGFKPLEQITL  213 (229)
T ss_dssp             EEEEEEEE-------HHHH-S---------SSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred             cEEEEEEe-------cCcccC---------cCCHHHHHHHHHHHHHHcCCChheEecc
Confidence            99999531       111100         011111 111  1577789999988766

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.0022  Score=59.69  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.||.+|+|.|+|+|+++-.+++.... .+++..|+.+...+.|++.++.+                             
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----------------------------  153 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----------------------------  153 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----------------------------
Confidence            479999999999999999998887643 48999999999999999988763                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         ++.+++.+..-|.-.. ....+..+|.|+.---           .+...+-.++.+|+.+|
T Consensus       154 -------------------gi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP-----------aPw~AiPha~~~lk~~g  203 (314)
T KOG2915|consen  154 -------------------GIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLP-----------APWEAIPHAAKILKDEG  203 (314)
T ss_pred             -------------------CCCcceEEEEeecccCCccccccccceEEEcCC-----------ChhhhhhhhHHHhhhcC
Confidence                               3566777777776553 1222577899985322           23334455667888777


Q ss_pred             EEEE
Q 047406          218 IFVL  221 (290)
Q Consensus       218 ~l~i  221 (290)
                      .-++
T Consensus       204 ~r~c  207 (314)
T KOG2915|consen  204 GRLC  207 (314)
T ss_pred             ceEE
Confidence            4444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.43  E-value=0.00073  Score=62.72  Aligned_cols=150  Identities=18%  Similarity=0.158  Sum_probs=79.0

Q ss_pred             CcEEEecCCCC--hhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           64 KDCLDIGCNSG--IITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        64 ~~vLDiGcG~G--~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ...||||||-=  ...=.+|+. .|..+|+-+|.+|-++..++..+...                               
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-------------------------------  118 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-------------------------------  118 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------------------------------
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------------------------------
Confidence            47999999932  233334443 46779999999999999888865430                               


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC---CCC-------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDS-------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                        -.....+.+.|+++.   +..       ...+.=.++...++||+.   ++++...++..+.
T Consensus       119 ------------------~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~---D~~dp~~iv~~l~  177 (267)
T PF04672_consen  119 ------------------PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVP---DDDDPAGIVARLR  177 (267)
T ss_dssp             ------------------TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS----CGCTHHHHHHHHH
T ss_pred             ------------------CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCC---CccCHHHHHHHHH
Confidence                              011266777777662   110       113344667778888774   4578899999999


Q ss_pred             hhcCCCcEEEEeeCCCchh-hhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406          211 KLLRPGGIFVLEPQPWVSY-EKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      ..|.||.+|++++...... .....+............+.+.+.++.++.  ||++++
T Consensus       178 d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  178 DALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             CCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred             HhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence            9999999999987643211 111223333333333344555444444554  777654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.42  E-value=4.3e-05  Score=60.13  Aligned_cols=100  Identities=23%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             EEecCCCChhhHHHHhHcCCc---eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           67 LDIGCNSGIITIQIAQKFNCR---SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        67 LDiGcG~G~~~~~la~~~~~~---~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ||+||..|..+..+++.....   +++++|..+. .+.+...++.                                   
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-----------------------------------   44 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-----------------------------------   44 (106)
T ss_dssp             --------------------------EEEESS------------------------------------------------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------------------------------
Confidence            689999998888887755432   6999999986 2222222211                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                   .++..++.+...+..+.++.- .+++|+|+.-..-       ..+.....+..+.+.|+|||++++.
T Consensus        45 -------------~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H-------~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   45 -------------AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH-------SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES----------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -------------cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-------CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                         233446888888876532222 3789999963221       1245677889999999999999884

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.42  E-value=0.00049  Score=64.30  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=79.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+.+++|.=+..+++.+. ...|++.|+++..+...+.++...+                             
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----------------------------  134 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----------------------------  134 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----------------------------
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----------------------------
Confidence            5789999999999999999999887 4589999999999999999887632                             


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEc------------hhhhhhhhcC----CchHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCL------------SVTKWIHLNW----GDDGL  202 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~------------~vl~~~~l~~----~~~~~  202 (290)
                                         .. .+.....|.....+. ....||.|++-            ....|..-..    -...+
T Consensus       135 -------------------~~-~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q  194 (283)
T PF01189_consen  135 -------------------VF-NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQ  194 (283)
T ss_dssp             --------------------S-SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHH
T ss_pred             -------------------Cc-eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHH
Confidence                               22 344444554442111 22358999881            1111210000    01234


Q ss_pred             HHHHHHHHhhc----CCCcEEEEeeC
Q 047406          203 ITLFMRIWKLL----RPGGIFVLEPQ  224 (290)
Q Consensus       203 ~~~l~~~~~~L----kpgG~l~i~~~  224 (290)
                      .++|.++.+.+    +|||+++.++-
T Consensus       195 ~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  195 REILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             HHHHHHHHHhhcccccCCCeEEEEec
Confidence            79999999999    99999999764

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.40  E-value=0.00064  Score=55.87  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=40.1

Q ss_pred             cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ++||+|||.|..+..+++..+..+|+++|.++.+.+.++.++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~   44 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL   44 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence            58999999999999999987767899999999999999998765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.29  E-value=0.00017  Score=65.18  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ....|+|..||.|..+++.|..++  .|+++|+||.-+.-|+.|++-                                 
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei---------------------------------  138 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV---------------------------------  138 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee---------------------------------
Confidence            567899999999999999999855  799999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILC  186 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~  186 (290)
                                     .++.++|.|.++|+++.   ++.....+|+|+.
T Consensus       139 ---------------YGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen  139 ---------------YGVPDRITFICGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             ---------------ecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence                           56677899999999873   4444455677775

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.23  E-value=0.0023  Score=61.52  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      +.+|+++|||||++|.++..++++  +..|+++|.++
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~  243 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP  243 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh
Confidence            357899999999999999999887  34999999654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.15  E-value=0.001  Score=58.98  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             hhhHHhhhhc--cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           51 PRFKVLKKEW--FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        51 ~~l~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      +|+..+...+  .....+.|+|+|+|+++...|..  ..+|++++.+|...+.|++|+..                    
T Consensus        19 eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v--------------------   76 (252)
T COG4076          19 ERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV--------------------   76 (252)
T ss_pred             HHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC--------------------
Confidence            5555543322  23478999999999998875554  55899999999999999887532                    


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                                  ++ ..++++..+|..+ +.+  ...|+|+|-.. .-.-   -.+.+..++..
T Consensus        77 ----------------------------~g-~~n~evv~gDA~~-y~f--e~ADvvicEml-DTaL---i~E~qVpV~n~  120 (252)
T COG4076          77 ----------------------------PG-DVNWEVVVGDARD-YDF--ENADVVICEML-DTAL---IEEKQVPVINA  120 (252)
T ss_pred             ----------------------------CC-CcceEEEeccccc-ccc--cccceeHHHHh-hHHh---hcccccHHHHH
Confidence                                        22 3468899999877 333  56799998321 1000   13556788888


Q ss_pred             HHhhcCCCcEEEE
Q 047406          209 IWKLLRPGGIFVL  221 (290)
Q Consensus       209 ~~~~LkpgG~l~i  221 (290)
                      +...|+.++.++=
T Consensus       121 vleFLr~d~tiiP  133 (252)
T COG4076         121 VLEFLRYDPTIIP  133 (252)
T ss_pred             HHHHhhcCCcccc
Confidence            8889999988765

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.0019  Score=64.57  Aligned_cols=46  Identities=26%  Similarity=0.503  Sum_probs=41.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..++.++|+-||||.++..+|+.  ..+|+|+++++++++.|++++..
T Consensus       382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~  427 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI  427 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh
Confidence            67789999999999999999886  45899999999999999998764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.00  E-value=0.0066  Score=50.61  Aligned_cols=48  Identities=23%  Similarity=0.320  Sum_probs=41.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+..+|+|+|||.|.++..++..+    +..+|+++|.++..++.+......
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~   75 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK   75 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence            456899999999999999998822    466999999999999999887665

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.02  Score=51.34  Aligned_cols=136  Identities=17%  Similarity=0.150  Sum_probs=88.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+||=+|..+|.-...++.-.+...|+|++.|+........-+..                                
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------------------------------  122 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------------------------------  122 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------------------------------
Confidence            688999999999998888888776656799999999888776654433                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                         ..++-....|....  +..-=+..|+|++--.        ..++.+-+..+...-|+++|.
T Consensus       123 -------------------R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA--------Qp~Qa~I~~~Na~~FLk~~G~  175 (231)
T COG1889         123 -------------------RPNIIPILEDARKPEKYRHLVEKVDVIYQDVA--------QPNQAEILADNAEFFLKKGGY  175 (231)
T ss_pred             -------------------CCCceeeecccCCcHHhhhhcccccEEEEecC--------CchHHHHHHHHHHHhcccCCe
Confidence                               23455666666542  1111245888886322        124446667788889999998


Q ss_pred             EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHH---HHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEI---LLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ll~~~Gf~~v~~~~~  271 (290)
                      +++..-       ++..         ..+-.+++..+.   -|+..||++.+.+.-
T Consensus       176 ~~i~iK-------ArSI---------dvT~dp~~vf~~ev~kL~~~~f~i~e~~~L  215 (231)
T COG1889         176 VVIAIK-------ARSI---------DVTADPEEVFKDEVEKLEEGGFEILEVVDL  215 (231)
T ss_pred             EEEEEE-------eecc---------cccCCHHHHHHHHHHHHHhcCceeeEEecc
Confidence            877421       1100         001122222221   477899999998876

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.92  E-value=0.006  Score=55.25  Aligned_cols=105  Identities=20%  Similarity=0.242  Sum_probs=75.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|.|||.||-|-|++...+ |+.+...=+-++..|++++.-+.+.+.                                
T Consensus       100 tkggrvLnVGFGMgIidT~i-Qe~~p~~H~IiE~hp~V~krmr~~gw~--------------------------------  146 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFI-QEAPPDEHWIIEAHPDVLKRMRDWGWR--------------------------------  146 (271)
T ss_pred             hCCceEEEeccchHHHHHHH-hhcCCcceEEEecCHHHHHHHHhcccc--------------------------------
Confidence            67899999999999998876 445666678899999999988876443                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                        ...++....+-+.+..+ .+++.||-|+---...   +   -+++..+...+.++|||+|++
T Consensus       147 ------------------ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e---~---yEdl~~~hqh~~rLLkP~gv~  202 (271)
T KOG1709|consen  147 ------------------EKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE---L---YEDLRHFHQHVVRLLKPEGVF  202 (271)
T ss_pred             ------------------cccceEEEecchHhhhccccccCcceeEeechhh---H---HHHHHHHHHHHhhhcCCCceE
Confidence                              12345455554444322 2567899998632211   1   167888899999999999999


Q ss_pred             EEe
Q 047406          220 VLE  222 (290)
Q Consensus       220 ~i~  222 (290)
                      -+-
T Consensus       203 Syf  205 (271)
T KOG1709|consen  203 SYF  205 (271)
T ss_pred             EEe
Confidence            873

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.92  E-value=0.0056  Score=59.26  Aligned_cols=114  Identities=11%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.-.++|-+|.|.|.....+.+ +| ..+|+-+|++|.+++.++.+.....   .                         
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~---~-------------------------  338 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRA---L-------------------------  338 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhh---h-------------------------
Confidence            3447899999999999999866 56 5599999999999999986543300   0                         


Q ss_pred             hHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH-----HHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL-----ITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~-----~~~l~~~~~~L  213 (290)
                                     .+... ..++.+...|..+-+....+.||+|+.-.-      +-..+..     ..+..-+.+.|
T Consensus       339 ---------------N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l  397 (508)
T COG4262         339 ---------------NQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHL  397 (508)
T ss_pred             ---------------ccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC------CCCCcchhhhhhHHHHHHHHHhc
Confidence                           00111 235777888876644455678999996210      0001111     46778889999


Q ss_pred             CCCcEEEEeeC
Q 047406          214 RPGGIFVLEPQ  224 (290)
Q Consensus       214 kpgG~l~i~~~  224 (290)
                      +++|+++++.+
T Consensus       398 ~e~Gl~VvQag  408 (508)
T COG4262         398 AETGLMVVQAG  408 (508)
T ss_pred             CcCceEEEecC
Confidence            99999999643

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.88  E-value=0.027  Score=51.62  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ....|++||-+|=..- .++.+|....+.+|+.+|+++..++..+.....                              
T Consensus        41 gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~------------------------------   89 (243)
T PF01861_consen   41 GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEE------------------------------   89 (243)
T ss_dssp             T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH------------------------------
T ss_pred             CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH------------------------------
Confidence            3468999999984443 344445445567999999999999998887665                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                        .++  .+.....|+++.+|.. .+.||++++-..       |..+++.-++++....|+..|
T Consensus        90 ------------------~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-------yT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen   90 ------------------EGL--PIEAVHYDLRDPLPEELRGKFDVFFTDPP-------YTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             ------------------HT----EEEE---TTS---TTTSS-BSEEEE----------SSHHHHHHHHHHHHHTB-STT
T ss_pred             ------------------cCC--ceEEEEecccccCCHHHhcCCCEEEeCCC-------CCHHHHHHHHHHHHHHhCCCC
Confidence                              233  3889999999876653 589999998433       345788899999999999766


Q ss_pred             -EEEEeeCCCchhhhhhhhhhhhhccccccccCc---hhHHHHHHHHcCCeeeEeccC
Q 047406          218 -IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP---KEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 -~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                       ..+++.....                    ..+   .++++ ++-+.||.+.+++..
T Consensus       143 ~~gy~~~~~~~--------------------~s~~~~~~~Q~-~l~~~gl~i~dii~~  179 (243)
T PF01861_consen  143 CAGYFGFTHKE--------------------ASPDKWLEVQR-FLLEMGLVITDIIPD  179 (243)
T ss_dssp             -EEEEEE-TTT----------------------HHHHHHHHH-HHHTS--EEEEEEEE
T ss_pred             ceEEEEEecCc--------------------CcHHHHHHHHH-HHHHCCcCHHHHHhh
Confidence             5566433111                    011   13444 455899988877654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.79  E-value=0.011  Score=52.79  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+++|.+|+|+-.|.|.++..++...+. ..|++.-..+...-.....-+.         .                   
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~---------~-------------------   96 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRL---------N-------------------   96 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhh---------h-------------------
Confidence            4578999999999999999999887653 2555554333211111110000         0                   


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhc-CCchHHHHHHHHHHhhcCCC
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN-WGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~-~~~~~~~~~l~~~~~~Lkpg  216 (290)
                       +++++              ....+.+........ +. +.+..|+++....-|-+|.- .......++...+.+.||||
T Consensus        97 -~~~~e--------------~~~aN~e~~~~~~~A-~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG  159 (238)
T COG4798          97 -AAARE--------------PVYANVEVIGKPLVA-LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG  159 (238)
T ss_pred             -hhhhh--------------hhhhhhhhhCCcccc-cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence             00000              001122222222222 12 34556666654333222211 12456688999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      |++.++.+.-   ......++...    -.++.+....+ ..+++||+..-
T Consensus       160 Gv~~V~dH~a---~pG~~~~dt~~----~~ri~~a~V~a-~veaaGFkl~a  202 (238)
T COG4798         160 GVYLVEDHRA---DPGSGLSDTIT----LHRIDPAVVIA-EVEAAGFKLEA  202 (238)
T ss_pred             cEEEEEeccc---cCCCChhhhhh----hcccChHHHHH-HHHhhcceeee
Confidence            9999965411   11111111111    11345555555 68899998663

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.77  E-value=0.012  Score=55.79  Aligned_cols=180  Identities=13%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ..+||--|||.|.++..||-...  .+-|-+.|--|+-...--+.. ...      .-.+.--|++---+-.-      .
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~-~~~------~nq~~IYPfIh~~sn~~------~  215 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNY-CKQ------ENQFTIYPFIHQYSNSL------S  215 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHh-hcc------CCcEEEEeeeecccccc------c
Confidence            46899999999999999998754  455667766665444332211 000      01111112221111000      0


Q ss_pred             HHHHhhhcCCCcc----ccCcCcceeEeecccccCCCC--CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          143 EEKKAISRNCSPA----ERNLFDIVSFKQENFVHGRDS--PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       143 ~~~~~~~~~~~~~----~~~~~~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                      .+-.-++.+..+.    .+......+...+||++-.+.  ..+.||+|+..+-+.      ........++.+.++|+||
T Consensus       216 ~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID------Ta~NileYi~tI~~iLk~G  289 (369)
T KOG2798|consen  216 RDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID------TAHNILEYIDTIYKILKPG  289 (369)
T ss_pred             cccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee------chHHHHHHHHHHHHhccCC
Confidence            0000011111111    122223344466888874333  346799999864432      3356788899999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      |+.+=..|-.-.+....     ...+-..+.+..++..+ +++.-||++++.-
T Consensus       290 GvWiNlGPLlYHF~d~~-----g~~~~~siEls~edl~~-v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  290 GVWINLGPLLYHFEDTH-----GVENEMSIELSLEDLKR-VASHRGFEVEKER  336 (369)
T ss_pred             cEEEeccceeeeccCCC-----CCcccccccccHHHHHH-HHHhcCcEEEEee
Confidence            98765333111111000     00122245566677777 7889999988664

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.76  E-value=0.018  Score=56.61  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIV  110 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~  110 (290)
                      .+|.||||+.+-+|.=+..+|..+.+. .|++.|.+...+.....++..++
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG  290 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG  290 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC
Confidence            588999999999999888888887653 78999999999999999988754

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.68  E-value=0.014  Score=52.52  Aligned_cols=47  Identities=26%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ....+.|||||.|.+.+.++..+|+..|+|.+|--.+-+..+..+..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A  106 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA  106 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHH
Confidence            44679999999999999999999999999999988888888877765

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.64  E-value=0.0086  Score=54.13  Aligned_cols=152  Identities=13%  Similarity=0.126  Sum_probs=74.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch-hh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK-NV  138 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  138 (290)
                      .+.++||-.||+|.+.-.+.-..+.  ..|+|.||++++++.|++|+.....++...-.+.......  .+|..+.. -.
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e--~~~kps~~eAl  128 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE--QYGKPSHAEAL  128 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--HH--HHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH--HcCCchHHHHH
Confidence            3469999999999887777666554  3899999999999999999976554444432222221111  11111110 00


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC----CCCCceeEEEEc----hhhhhhhhcCCchHHHHHHHHHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD----SPEKYYDAILCL----SVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~fD~I~~~----~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                      -||.. -..+    -.+.... ......+.|..+..+    ......|+|+.-    ....|-.- .+.....++|..+.
T Consensus       129 ~sA~R-L~~~----l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~-~~~~p~~~ml~~l~  201 (246)
T PF11599_consen  129 ESADR-LRER----LAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE-GSGGPVAQMLNSLA  201 (246)
T ss_dssp             HHHHH-HHHH----HHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS----HHHHHHHHHHHH
T ss_pred             HHHHH-HHHH----HHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCC-CCCCcHHHHHHHHH
Confidence            00000 0000    0001111 125666777655211    122346999872    33444421 13355689999999


Q ss_pred             hhcCCCcEEEEe
Q 047406          211 KLLRPGGIFVLE  222 (290)
Q Consensus       211 ~~LkpgG~l~i~  222 (290)
                      .+|-++.+++++
T Consensus       202 ~vLp~~sVV~v~  213 (246)
T PF11599_consen  202 PVLPERSVVAVS  213 (246)
T ss_dssp             CCS-TT-EEEEE
T ss_pred             hhCCCCcEEEEe
Confidence            999666666663

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.56  E-value=0.091  Score=52.88  Aligned_cols=49  Identities=22%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIV  110 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~  110 (290)
                      +..+|+|..||+|......+....    ...++|.|+++.....|+.++-.++
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg  238 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG  238 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence            567999999999988777666553    2579999999999999999887743

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.44  E-value=0.0099  Score=54.69  Aligned_cols=43  Identities=21%  Similarity=0.395  Sum_probs=37.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++..|+|||+|.|.++..|+...  .+++++|+++..++..+..
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~   71 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKER   71 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHH
Confidence            378999999999999999999874  6999999999888777763

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.43  E-value=0.011  Score=55.92  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++..++|.-+|.|..+..++...+...|+|+|.++.+++.+++.+..
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            467899999999999999999887667999999999999999987654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.20  E-value=0.021  Score=48.21  Aligned_cols=85  Identities=22%  Similarity=0.291  Sum_probs=52.7

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEee
Q 047406           88 SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQ  167 (290)
Q Consensus        88 ~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  167 (290)
                      +|+|.||-+.+++.++..+..                                                .++.+++.+..
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~------------------------------------------------~~~~~~v~li~   32 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEE------------------------------------------------AGLEDRVTLIL   32 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHH------------------------------------------------TT-GSGEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHh------------------------------------------------cCCCCcEEEEE
Confidence            589999999999999998876                                                22333466655


Q ss_pred             cccccCCC-CCCCceeEEEEchhhhhhhhcCCchH-------HHHHHHHHHhhcCCCcEEEEeeC
Q 047406          168 ENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDG-------LITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       168 ~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+-.+... .+.+++|+++.+...    |..++..       -...++.+.++|+|||++.+..-
T Consensus        33 ~sHe~l~~~i~~~~v~~~iFNLGY----LPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y   93 (140)
T PF06962_consen   33 DSHENLDEYIPEGPVDAAIFNLGY----LPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY   93 (140)
T ss_dssp             S-GGGGGGT--S--EEEEEEEESB-----CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CCHHHHHhhCccCCcCEEEEECCc----CCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence            54333111 122578988865332    2334332       35788999999999999999643

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.028  Score=56.08  Aligned_cols=115  Identities=14%  Similarity=0.180  Sum_probs=80.0

Q ss_pred             hhhhccCCC-cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           56 LKKEWFEGK-DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        56 l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      |.++..+-. ++|-+|||+-.+...+-.. +...|+.+|+|+-+++........                          
T Consensus        41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~--------------------------   93 (482)
T KOG2352|consen   41 IMKYLSPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK--------------------------   93 (482)
T ss_pred             HHHhhchhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc--------------------------
Confidence            334434444 9999999999888876543 445899999999888776552110                          


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC----CchHHHHHHHHHH
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW----GDDGLITLFMRIW  210 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~----~~~~~~~~l~~~~  210 (290)
                                              ...-+.+...|... +.+++.+||+|+--..++.+-.+-    ........+..+.
T Consensus        94 ------------------------~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVs  148 (482)
T KOG2352|consen   94 ------------------------ERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVS  148 (482)
T ss_pred             ------------------------CCcceEEEEecchh-ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHH
Confidence                                    12236777777766 577889999999987776432211    1123457889999


Q ss_pred             hhcCCCcEEEEe
Q 047406          211 KLLRPGGIFVLE  222 (290)
Q Consensus       211 ~~LkpgG~l~i~  222 (290)
                      ++|+|||+++..
T Consensus       149 rvl~~~gk~~sv  160 (482)
T KOG2352|consen  149 RVLAPGGKYISV  160 (482)
T ss_pred             HHhccCCEEEEE
Confidence            999999997774

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.95  E-value=0.032  Score=54.40  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+.++||.=+|+|.=++..+.+.+ ...|++-|+|+++++..+.|+..                               
T Consensus        48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~-------------------------------   96 (377)
T PF02005_consen   48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL-------------------------------   96 (377)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-------------------------------
T ss_pred             cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-------------------------------
Confidence            3456999999999999999998854 45899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          140 AAQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                       +++.. .+.+...|....+......||+|=.       .- +|  ....++....+.++.||+
T Consensus        97 -----------------N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-------DP-fG--Sp~pfldsA~~~v~~gGl  149 (377)
T PF02005_consen   97 -----------------NGLEDERIEVSNMDANVLLYSRQERFDVIDL-------DP-FG--SPAPFLDSALQAVKDGGL  149 (377)
T ss_dssp             -----------------CT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----------SS----HHHHHHHHHHEEEEEE
T ss_pred             -----------------ccccCceEEEehhhHHHHhhhccccCCEEEe-------CC-CC--CccHhHHHHHHHhhcCCE
Confidence                             44444 4667666654422224578999874       11 12  235788899999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      |.+..
T Consensus       150 l~vTa  154 (377)
T PF02005_consen  150 LCVTA  154 (377)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99954

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.87  E-value=0.058  Score=48.00  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=29.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeC
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDI   94 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Di   94 (290)
                      +.++.+|||+||.+|+++...-++. |..-|.|+|+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl  102 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL  102 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence            4678999999999999988877766 5567999998

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.83  E-value=0.014  Score=52.32  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      +..+.-++ +...|+|+|.-.|.-++.+|..+    +..+|+|+|++-.........                       
T Consensus        24 ~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e-----------------------   79 (206)
T PF04989_consen   24 YQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE-----------------------   79 (206)
T ss_dssp             HHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG-----------------------
T ss_pred             HHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh-----------------------
Confidence            44555553 56899999999997776665433    456999999954222111000                       


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLI  203 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~  203 (290)
                                                 .-.+..+|++.++|..+.     .......++-++.....+|.+     +...
T Consensus        80 ---------------------------~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~-----~hvl  127 (206)
T PF04989_consen   80 ---------------------------SHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH-----EHVL  127 (206)
T ss_dssp             ---------------------------G----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS---------SSHH
T ss_pred             ---------------------------hccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH-----HHHH
Confidence                                       011235789999987652     111112233333222322222     5567


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ..|+....++++|++++++..
T Consensus       128 ~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  128 AELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             HHHHHHHHT--TT-EEEETSH
T ss_pred             HHHHHhCccCCCCCEEEEEec
Confidence            888889999999999999643

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.76  E-value=0.049  Score=52.35  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             hccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        59 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ...+|.+|+-+|+| .|..++++|+.+. .+|+++|.|++-++.|++-
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence            35789999999998 3478999999777 7999999999999999873

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.73  E-value=0.042  Score=50.65  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=35.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ++..+|+|||||-=-++.......+...++|+||++..++.....+..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~  151 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV  151 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            456899999999887777665555567999999999999999887655

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.044  Score=52.98  Aligned_cols=112  Identities=15%  Similarity=0.256  Sum_probs=63.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +...++||+|.|+|.-...+-..+|.. +++-++.|+..-+....-...                               
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n-------------------------------  160 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN-------------------------------  160 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-------------------------------
Confidence            345789999999998877666666643 566677776444333322111                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                  ..+      ........|+... ++. ..+.|++++...-+  ++ +.....+...++.+|.++.|||
T Consensus       161 ------------v~t------~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eL--l~-d~~ek~i~~~ie~lw~l~~~gg  219 (484)
T COG5459         161 ------------VST------EKTDWRASDVTEDRLSLPAADLYTLAIVLDEL--LP-DGNEKPIQVNIERLWNLLAPGG  219 (484)
T ss_pred             ------------ccc------ccCCCCCCccchhccCCCccceeehhhhhhhh--cc-ccCcchHHHHHHHHHHhccCCC
Confidence                        000      0111112222211 122 23567777665544  22 2233344569999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .|+|..+
T Consensus       220 ~lVivEr  226 (484)
T COG5459         220 HLVIVER  226 (484)
T ss_pred             eEEEEeC
Confidence            9999543

>PRK10742 putative methyltransferase; Provisional

Probab=95.53  E-value=0.047  Score=50.37  Aligned_cols=46  Identities=15%  Similarity=0.081  Sum_probs=39.9

Q ss_pred             cCCC--cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGK--DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|.  +|||+-+|+|..+..++.. ++ +|+++|-++......+.++..
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~-G~-~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASV-GC-RVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHH
Confidence            4666  8999999999999998876 44 699999999999999888776

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.42  E-value=0.092  Score=48.41  Aligned_cols=110  Identities=19%  Similarity=0.174  Sum_probs=70.8

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ...||++|+|+|..++..|.. ....+..+|+ +..+...+.+......                               
T Consensus        87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~-~~~~~~L~~~~~~~~~-------------------------------  133 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL-LGAEVVLTDL-PKVVENLKFNRDKNNI-------------------------------  133 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH-hcceeccCCc-hhhHHHHHHhhhhhhh-------------------------------
Confidence            346999999999888876664 3458999998 5555555554322100                               


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCC--CCCc-eeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS--PEKY-YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~-fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                  +.+++...+.....++.+....  .... +|+|+...+.      +.......++.-+..+|..++++
T Consensus       134 ------------~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvv------y~~~~~e~Lv~tla~ll~~~~~i  195 (248)
T KOG2793|consen  134 ------------ALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVV------YEEESFEGLVKTLAFLLAKDGTI  195 (248)
T ss_pred             ------------hhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeee------ecCCcchhHHHHHHHHHhcCCeE
Confidence                        0022222455666666553211  1233 8999998886      23466788888899999999977


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       196 ~l~~  199 (248)
T KOG2793|consen  196 FLAY  199 (248)
T ss_pred             EEEE
Confidence            7754

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.32  E-value=0.093  Score=49.42  Aligned_cols=44  Identities=16%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++.+||-.|||. |..++++|+..+...|+++|.+++.++.+++
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            4688999999874 5677778887766579999999998888765

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.30  E-value=0.21  Score=48.47  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=38.8

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCc----eEEEEeCCHHHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCR----SILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~----~i~g~Dis~~~l~~a~~~~  106 (290)
                      .+.++.+|||+...+|.=+.++.+..-+.    .|++=|+++..+......+
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~  203 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL  203 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence            35789999999999999887777654433    7899999998888877765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.11  E-value=0.033  Score=50.98  Aligned_cols=47  Identities=23%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ++.++||||.|.-.+--.+-.+.-.++.+|+|+|+.+++.|+..+..
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~  124 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISA  124 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHc
Confidence            56789999999775533333332357999999999999999998765

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=94.96  E-value=0.24  Score=51.42  Aligned_cols=78  Identities=17%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhh
Q 047406          162 IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT  239 (290)
Q Consensus       162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  239 (290)
                      .+++..+|+.+.++.....+|+++.-.-.-    . ..+.+  ..+|+++.++++|||+++-                  
T Consensus       148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP----~-~np~~W~~~~~~~l~~~~~~~~~~~t------------------  204 (662)
T PRK01747        148 TLDLWFGDANELLPQLDARADAWFLDGFAP----A-KNPDMWSPNLFNALARLARPGATLAT------------------  204 (662)
T ss_pred             EEEEEecCHHHHHHhccccccEEEeCCCCC----c-cChhhccHHHHHHHHHHhCCCCEEEE------------------
Confidence            466777887765443345699999632110    0 01222  6899999999999999987                  


Q ss_pred             hccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          240 ATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       240 ~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                              ++....++.-|..+||++.+.-+
T Consensus       205 --------~t~a~~vr~~l~~~GF~v~~~~~  227 (662)
T PRK01747        205 --------FTSAGFVRRGLQEAGFTVRKVKG  227 (662)
T ss_pred             --------eehHHHHHHHHHHcCCeeeecCC
Confidence                    33455566678889998766533

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.70  E-value=0.092  Score=50.31  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++.+|+-+|||+ |..++.+++.++...|+++|.+++.++.|++.
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            3445899999998 88889999999888999999999999999873

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.43  E-value=0.26  Score=49.95  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=37.3

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++.+|+-+|||. |..++..|+.+++ .|+++|.+++.++.++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes  206 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES  206 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4688999999997 7778888888776 79999999999998876

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=93.87  E-value=0.9  Score=42.13  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=33.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .+++|+.||.|..+.-+.+. +...++++|+++.+++..+.|.
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~   42 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANF   42 (275)
T ss_pred             CcEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhC
Confidence            37999999999998877654 3346789999999988877754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.85  E-value=0.26  Score=48.25  Aligned_cols=57  Identities=14%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             eecccccCCCCCCCceeEEEEchhhhhhhh-----------cCC---------c------------hHHHHHHHHHHhhc
Q 047406          166 KQENFVHGRDSPEKYYDAILCLSVTKWIHL-----------NWG---------D------------DGLITLFMRIWKLL  213 (290)
Q Consensus       166 ~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l-----------~~~---------~------------~~~~~~l~~~~~~L  213 (290)
                      ..+.|... -+|.++.|+++|...+||+.-           .|.         .            .++..+|+.=.+-|
T Consensus       149 vpGSFY~R-LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~EL  227 (386)
T PLN02668        149 VPGSFYRR-LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEM  227 (386)
T ss_pred             cCcccccc-ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455542 457899999999999999751           010         0            12234444445669


Q ss_pred             CCCcEEEEee
Q 047406          214 RPGGIFVLEP  223 (290)
Q Consensus       214 kpgG~l~i~~  223 (290)
                      .|||.+++..
T Consensus       228 vpGG~mvl~~  237 (386)
T PLN02668        228 KRGGAMFLVC  237 (386)
T ss_pred             ccCcEEEEEE
Confidence            9999999964

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.80  E-value=0.16  Score=44.16  Aligned_cols=42  Identities=26%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|..|||.-||+|..+....+.  +++.+|+|+++..++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            68899999999999987764433  5789999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.39  E-value=0.19  Score=45.93  Aligned_cols=85  Identities=13%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||.-+|-|.-+..+|.. ++ +|+++|-||-........+...... .                    +        
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G~-~V~~lErspvia~Ll~dGL~r~~~~-~--------------------~--------  125 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-GC-KVTGLERSPVIAALLKDGLKRAQQD-P--------------------E--------  125 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHS-T--------------------T--------
T ss_pred             CEEEECCCcchHHHHHHHcc-CC-eEEEEECCHHHHHHHHHHHHHHHhC-c--------------------H--------
Confidence            38999999999999988864 44 8999999998877777766652110 0                    0        


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhh
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT  190 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl  190 (290)
                       +          ......+|++...|..+.+..+..+||+|++-.+.
T Consensus       126 -~----------~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  126 -L----------LAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMF  161 (234)
T ss_dssp             -T----------HHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S-
T ss_pred             -h----------HHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCC
Confidence             0          01112469999999888666667899999985554

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.38  E-value=0.25  Score=46.75  Aligned_cols=117  Identities=16%  Similarity=0.105  Sum_probs=78.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..+++|-||-|.|.+....+++-..-+|.-+|++...++..++....+.                              
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la------------------------------  169 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA------------------------------  169 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh------------------------------
Confidence            45689999999999988887776222378999999999999999876531                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                 |+    --..++....+|....+. ...++||+|+.-..=- + ...-.-=+...+..+.+.|++||++
T Consensus       170 -----------~g----y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdp-v-gpa~~lf~~~~~~~v~~aLk~dgv~  232 (337)
T KOG1562|consen  170 -----------CG----YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDP-V-GPACALFQKPYFGLVLDALKGDGVV  232 (337)
T ss_pred             -----------cc----cCCCceEEEeccHHHHHHHhccCCceEEEEecCCc-c-chHHHHHHHHHHHHHHHhhCCCcEE
Confidence                       11    112346666667544322 2468999999731100 0 0000011367888899999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       233 ~~q~e  237 (337)
T KOG1562|consen  233 CTQGE  237 (337)
T ss_pred             EEecc
Confidence            99654

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=93.23  E-value=0.059  Score=46.75  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             eEeecccccCCCCCCCceeEEEEchhhhhhhhc--C---CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN--W---GDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~--~---~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ++...||...+..-.++||++.|..++++..|-  +   +..+=.+.+.++.++|||||.|++..|
T Consensus        47 si~p~df~~~~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   47 SILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             cccHHHHHHHHHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            344455554333345789999999888764432  1   122225778889999999999999765

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.20  E-value=0.48  Score=45.39  Aligned_cols=30  Identities=13%  Similarity=0.019  Sum_probs=17.8

Q ss_pred             eEeecccccCCCCCCCceeEEEEchhhhhhh
Q 047406          164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIH  194 (290)
Q Consensus       164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~  194 (290)
                      .-..+.|... -.|.++.|+++|...+||+.
T Consensus        92 ~gvpgSFy~r-LfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   92 SGVPGSFYGR-LFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             EEEES-TTS---S-TT-EEEEEEES-TTB-S
T ss_pred             EecCchhhhc-cCCCCceEEEEEechhhhcc
Confidence            3345666653 45789999999999999964

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.70  E-value=0.62  Score=43.34  Aligned_cols=43  Identities=12%  Similarity=0.071  Sum_probs=33.1

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      .++.++|-+|||. |..++++|+.++...|+++|.+++.++.|.
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~  186 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT  186 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence            4677899999875 677788888877766888999887766554

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.67  E-value=0.2  Score=50.27  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+.+|||.=|++|.-++..|.+.++. +|++-|.++.+++..+.++..                               
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~-------------------------------  156 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL-------------------------------  156 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh-------------------------------
Confidence            567899999999999999999988754 899999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                       +...+.++....|....   .+.....||+|=.       .-+ |.  .-.+|....+.++.|
T Consensus       157 -----------------N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL-------DPy-Gs--~s~FLDsAvqav~~g  209 (525)
T KOG1253|consen  157 -----------------NGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL-------DPY-GS--PSPFLDSAVQAVRDG  209 (525)
T ss_pred             -----------------cCchhhcccccchHHHHHHhccccccccceEec-------CCC-CC--ccHHHHHHHHHhhcC
Confidence                             22333455555554331   2234578999873       212 22  246778888999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      |+|.+..-
T Consensus       210 GLL~vT~T  217 (525)
T KOG1253|consen  210 GLLCVTCT  217 (525)
T ss_pred             CEEEEEec
Confidence            99999543

>PRK11524 putative methyltransferase; Provisional

Probab=92.66  E-value=0.32  Score=45.25  Aligned_cols=46  Identities=24%  Similarity=0.170  Sum_probs=39.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|..|||.-||||.-++. |.+. +++.+|+|++++.++.|...+..
T Consensus       207 ~~GD~VLDPF~GSGTT~~A-A~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAV-AKAS-GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHH-HHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence            6899999999999998776 4433 67899999999999999998754

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.64  E-value=0.072  Score=46.05  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          173 GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       173 ~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      ..++.+.+.|+|+|..++.|+.+    +.....++.+++.|+|||+|-+..+.
T Consensus        40 e~~F~dns~d~iyaeHvlEHlt~----~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          40 ESMFEDNSVDAIYAEHVLEHLTY----DEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             hccCCCcchHHHHHHHHHHHHhH----HHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            35667789999999999977654    56678899999999999999996543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=92.39  E-value=0.32  Score=48.46  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=36.5

Q ss_pred             cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      -+||||+|+|.++++.+.. ++.+|++++.-..+.+.|++-..+
T Consensus        69 ~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~k  111 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHK  111 (636)
T ss_pred             EEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhc
Confidence            5899999999998886665 466899999999999999886655

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.26  E-value=0.73  Score=44.82  Aligned_cols=46  Identities=24%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..+|+|.=+|+|+=++.+|.+.+...++.-|+||++++..+.|++.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~   98 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL   98 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh
Confidence            6899999999999999999988776899999999999999999876

>PRK13699 putative methylase; Provisional

Probab=92.14  E-value=0.47  Score=42.94  Aligned_cols=47  Identities=19%  Similarity=0.096  Sum_probs=39.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      -.+|..|||.-||+|..+....+ . ..+.+|+|+++...+.+.+.+..
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~-~-~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQ-S-GRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHH-c-CCCEEEEecCHHHHHHHHHHHHH
Confidence            35889999999999998776443 3 56899999999999999888765

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=92.13  E-value=0.2  Score=47.64  Aligned_cols=55  Identities=22%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      +.++.+..  .++...+|.--|.|.++..+++..+..+++|+|.|+.+++.|.+.+.
T Consensus        11 Evl~~L~~--~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~   65 (310)
T PF01795_consen   11 EVLEALNP--KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK   65 (310)
T ss_dssp             HHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred             HHHHhhCc--CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence            34444432  47789999999999999999998888899999999999999987554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.77  E-value=0.58  Score=44.59  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+|. |..+.++|+..+...|+++|.++..++.++.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            45788999999764 5667777777665479999999988887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.65  E-value=0.79  Score=43.40  Aligned_cols=45  Identities=27%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|||. |..++++|+..+...|+++|.++..++.++.
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            45788999998864 5667778887765469999999988887754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=91.62  E-value=0.8  Score=43.21  Aligned_cols=44  Identities=9%  Similarity=0.062  Sum_probs=33.2

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhH-cCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQK-FNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|.+||-+|||. |..++++++. ++..+|+++|.++..++.++.
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            5689999999875 4555666665 455689999999988877654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.52  E-value=0.43  Score=45.84  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||.+|||. |..++.+|+..+..+++++|.+++.++.++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            35688999999988 8888999998875569999999988887766

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.41  E-value=0.86  Score=45.07  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=34.2

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|++|+-+|||. |......++.++. +|+.+|.++..++.|..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM  243 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence            5799999999997 6666666666665 89999999988777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.34  E-value=0.34  Score=46.43  Aligned_cols=47  Identities=21%  Similarity=0.283  Sum_probs=42.6

Q ss_pred             hhccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           58 KEWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+..|.+||-+|+|+ |..+...|+.+++.+|+.+|+++..++.|++
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            3457889999999997 8888888999999999999999999999988

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.33  E-value=0.21  Score=50.28  Aligned_cols=53  Identities=15%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             cccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          168 ENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       168 ~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                      .|+-+..++-+..||+|....++.   ..-..-.+..++-++-|+|+|+|.++|..
T Consensus       415 hDWCE~fsTYPRTYDLlHA~~lfs---~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  415 HDWCEAFSTYPRTYDLLHADGLFS---LYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             cchhhccCCCCcchhheehhhhhh---hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            355555566678999999987763   11234457899999999999999999964

; GO: 0008168 methyltransferase activity

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.13  E-value=0.85  Score=41.69  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++.+||-.|+|. |..++++|+..+...|+++|.++..++.++.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~  163 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS  163 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4688999998864 5666777777765559999999988877765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.03  E-value=0.17  Score=40.50  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=27.0

Q ss_pred             CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           73 SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        73 ~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .|..++++|+..+ .+|+++|.++..++.+++
T Consensus         2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~   32 (130)
T PF00107_consen    2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKE   32 (130)
T ss_dssp             HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence            4778899999888 799999999999888866

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.98  E-value=1.4  Score=41.61  Aligned_cols=43  Identities=7%  Similarity=0.147  Sum_probs=32.6

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeC---CHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDI---DSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Di---s~~~l~~a~~  104 (290)
                      .++.+||-+|+|. |.++.++|+..+. +|++++.   ++..++.+++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence            4788999999875 6677888887765 7999986   6777666654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PHA01634 hypothetical protein

Probab=90.60  E-value=0.63  Score=39.11  Aligned_cols=47  Identities=4%  Similarity=-0.031  Sum_probs=41.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..+++|+|||.+.|.-++.++.+ ++..|++++.++...+..+.+++.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhh
Confidence            57899999999999999988775 566999999999999999888765

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=90.05  E-value=5.6  Score=36.70  Aligned_cols=152  Identities=12%  Similarity=0.071  Sum_probs=84.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..|+.+|||-=.-...+... +...++=+|. |++++.-++.+...+                                 
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~---------------------------------  127 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELG---------------------------------  127 (260)
T ss_pred             cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcC---------------------------------
Confidence            46999999976655554321 1345666665 556655555444311                                 


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                   .....+..+...|+.+.+       .......-++++-.++.|+    ..+....+|..+.+...||
T Consensus       128 -------------~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL----~~~~v~~ll~~i~~~~~~g  190 (260)
T TIGR00027       128 -------------AEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYL----TEEAVDALLAFIAELSAPG  190 (260)
T ss_pred             -------------CCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcC----CHHHHHHHHHHHHHhCCCC
Confidence                         001223455555554211       1122456688887887555    4678899999999999899


Q ss_pred             cEEEEeeCCCchhhh----hhhhhhhhh-cccc--ccccCchhHHHHHHHHcCCeeeEe
Q 047406          217 GIFVLEPQPWVSYEK----NRRVSETTA-TNFQ--NIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       217 G~l~i~~~~~~~~~~----~~~~~~~~~-~~~~--~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      +.+++....-.....    ......... ....  ...+.+++..+ +|...||+..+.
T Consensus       191 s~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gw~~~~~  248 (260)
T TIGR00027       191 SRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAE-WLAERGWRASEH  248 (260)
T ss_pred             cEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHH-HHHHCCCeeecC
Confidence            999996422110000    011111111 1111  11244555555 899999998876

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=89.86  E-value=0.72  Score=44.66  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVAD  101 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~  101 (290)
                      ...+|.-|.|--.|+|++.+..| +++ +-|+|+||+-.++..
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa-~FG-a~viGtDIDyr~vra  245 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAA-HFG-AYVIGTDIDYRTVRA  245 (421)
T ss_pred             ccCCCCEEecCccccCceeeehh-hhc-ceeeccccchheeec
Confidence            35799999999999999988744 454 489999998766653

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=89.78  E-value=0.25  Score=40.05  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=24.5

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeC
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI   94 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Di   94 (290)
                      ....+|||||+|.+...|.++  +..-+|+|+
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            457999999999998888776  446688887

; GO: 0008168 methyltransferase activity

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.72  E-value=2.6  Score=39.61  Aligned_cols=44  Identities=14%  Similarity=-0.031  Sum_probs=33.8

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|+|. |..++++|+..+. +|++++.+++.++.+++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~  207 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA  207 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence            46788999999763 5566777787664 79999999988777765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=89.64  E-value=1.5  Score=40.37  Aligned_cols=44  Identities=25%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||..|+|. |..++.+|+..+ .+|++++.++...+.++.
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH
Confidence            45678899988763 677788888765 469999999887766643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.41  E-value=1.2  Score=41.48  Aligned_cols=44  Identities=18%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|.+||-+|+|. |..++++|+.++...|+++|.+++.++.++.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~  206 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA  206 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            5688999998764 5566777777765459999999888777644

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=89.30  E-value=0.52  Score=38.89  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhh
Q 047406          162 IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT  239 (290)
Q Consensus       162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  239 (290)
                      .+.+..+|..+.++.....+|+|+--.-..     -..+++  ..+++++.++++|||++..                  
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-----~~nPelWs~e~~~~l~~~~~~~~~l~T------------------   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSP-----AKNPELWSEELFKKLARLSKPGGTLAT------------------   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-T-----TTSGGGSSHHHHHHHHHHEEEEEEEEE------------------
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCC-----cCCcccCCHHHHHHHHHHhCCCcEEEE------------------
Confidence            466777777654333347899999632210     011222  5899999999999999887                  


Q ss_pred             hccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          240 ATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       240 ~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                              +.....++..|..+||.+.+.-+-
T Consensus        89 --------ys~a~~Vr~~L~~aGF~v~~~~g~  112 (124)
T PF05430_consen   89 --------YSSAGAVRRALQQAGFEVEKVPGF  112 (124)
T ss_dssp             --------S--BHHHHHHHHHCTEEEEEEE-S
T ss_pred             --------eechHHHHHHHHHcCCEEEEcCCC
Confidence                    333445566899999998877655

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=89.02  E-value=9.2  Score=35.77  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      ..+.+.+|+|+|+..=+..+...+.    ....+.+|+|...+......+..-                           
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~---------------------------  129 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE---------------------------  129 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh---------------------------
Confidence            4568999999999866655544333    358899999999887665544330                           


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc--hhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL--SVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~--~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                         .+++  .+.-..+|+...+..+++.-.-++|.  ..+    =++..+....++.++...|+
T Consensus       130 -------------------y~~l--~v~~l~~~~~~~La~~~~~~~Rl~~flGStl----GN~tp~e~~~Fl~~l~~a~~  184 (321)
T COG4301         130 -------------------YPGL--EVNALCGDYELALAELPRGGRRLFVFLGSTL----GNLTPGECAVFLTQLRGALR  184 (321)
T ss_pred             -------------------CCCC--eEeehhhhHHHHHhcccCCCeEEEEEecccc----cCCChHHHHHHHHHHHhcCC
Confidence                               0111  23344455443322333444444442  222    13345677899999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      ||-++.+..
T Consensus       185 pGd~~LlGv  193 (321)
T COG4301         185 PGDYFLLGV  193 (321)
T ss_pred             CcceEEEec
Confidence            999999943

>PLN02740 Alcohol dehydrogenase-like

Probab=88.64  E-value=1.3  Score=42.39  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=35.8

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.+++
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            346788999999864 5667777887765579999999988888754

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.59  E-value=2.6  Score=39.13  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=32.3

Q ss_pred             CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ++.+||-.|||. |..+..+|+..+...+++++.++...+.++.
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~  208 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA  208 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            678899988875 6677778887654478999988877765443

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=88.46  E-value=2.2  Score=40.01  Aligned_cols=45  Identities=20%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+|. |..++++|+..+...++++|.+++.++.++.
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~  209 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE  209 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            35678999998763 5677778887766569999999887776654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.93  E-value=4.1  Score=35.21  Aligned_cols=45  Identities=22%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..+.+|+|+|.|.+-...++.. ...-+|++++|-.+..++-+...
T Consensus        73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R  117 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWR  117 (199)
T ss_pred             CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHH
Confidence            3689999999999988877653 35679999999999988887766

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=87.81  E-value=1.9  Score=41.04  Aligned_cols=48  Identities=23%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++...+|.--|.|.++..+...++.. +++|+|-||.+++.|++.+..
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            467899999999999999999998744 699999999999999997755

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.23  E-value=2.9  Score=36.63  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      .++.+||..|+|+ |.....+++..+ .+|++++.++...+.++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~  175 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAK  175 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence            5788999999986 666677777665 68999999987766653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=86.39  E-value=3.3  Score=38.80  Aligned_cols=44  Identities=36%  Similarity=0.559  Sum_probs=33.6

Q ss_pred             cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++.+||-.|+|+ |..++++|+..+...|++++.+++.++.++.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  203 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS  203 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            5688999998865 5677777887765458999999988777643

>PLN02827 Alcohol dehydrogenase-like

Probab=86.25  E-value=2  Score=41.25  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|+|. |..++++|+..+...|+++|.++..++.++.
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            46789999998764 5666777777765568999999988777644

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=86.05  E-value=0.61  Score=43.75  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVA  100 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~  100 (290)
                      ...+++|||+|||+|..++...... ..++...|++.+.++
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR  153 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence            3678999999999999888876653 358899999988873

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=85.63  E-value=1.6  Score=44.42  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             CcEEEecCCCChhhHHH---HhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           64 KDCLDIGCNSGIITIQI---AQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~l---a~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .+|+-+|.|-|-+.-..   |.... ..++++++-+|.++-..+..  .                               
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~--n-------------------------------  415 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR--N-------------------------------  415 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh--c-------------------------------
Confidence            46889999999554332   22221 34899999999998777652  1                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      -..+.+.+.....|++. ++.|....|++++- .|   .-.++.+--..+|..+-+.|+|+|+.
T Consensus       416 ----------------~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSE-LL---GSFGDNELSPECLDG~q~fLkpdgIs  474 (649)
T KOG0822|consen  416 ----------------FECWDNRVTIISSDMRK-WNAPREQADIIVSE-LL---GSFGDNELSPECLDGAQKFLKPDGIS  474 (649)
T ss_pred             ----------------hhhhcCeeEEEeccccc-cCCchhhccchHHH-hh---ccccCccCCHHHHHHHHhhcCCCceE
Confidence                            03345569999999987 56555789998862 22   11222333378999999999999877


Q ss_pred             EE
Q 047406          220 VL  221 (290)
Q Consensus       220 ~i  221 (290)
                      +=
T Consensus       475 IP  476 (649)
T KOG0822|consen  475 IP  476 (649)
T ss_pred             cc
Confidence            64

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=85.39  E-value=2.6  Score=42.40  Aligned_cols=48  Identities=17%  Similarity=0.110  Sum_probs=42.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..+..+|-+|-|+|.++..+...+|..++++++++|.+++.|..+...
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f  341 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF  341 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence            456789999999999999998888888999999999999999998754

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=84.85  E-value=3.8  Score=38.95  Aligned_cols=44  Identities=18%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             ccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|...  |.++++||+..+. .++++--+++..+.++.
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~  185 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE  185 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh
Confidence            46789999999554  5799999998876 66777777766665444

>PRK10083 putative oxidoreductase; Provisional

Probab=84.72  E-value=4.7  Score=37.32  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=31.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhH-cCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQK-FNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..++.+||-.|+|. |..+.++|+. ++...++++|.+++..+.++.
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~  204 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE  204 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            35688999999653 3455556664 465568899998888777654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.93  E-value=2.4  Score=41.54  Aligned_cols=57  Identities=16%  Similarity=0.008  Sum_probs=39.3

Q ss_pred             CCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           47 LNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        47 ~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .-+||+.+.-.=.+.++.+||-|.+|......+ +... +.+|++||+||..+...+-.
T Consensus        20 ~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~-P~~I~aVDlNp~Q~aLleLK   76 (380)
T PF11899_consen   20 CWEDPRVDMEALNIGPDDRVLTITSAGCNALDY-LLAG-PKRIHAVDLNPAQNALLELK   76 (380)
T ss_pred             ccCCcHHHHHHhCCCCCCeEEEEccCCchHHHH-HhcC-CceEEEEeCCHHHHHHHHHH
Confidence            568888776444557899999996554444444 4433 46999999999887655433

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.71  E-value=8.8  Score=34.32  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..++.++|-.|||. |..++.+|+.++...|++++.+++.++.+++
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~  140 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA  140 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence            35678899988875 6677777887765349999998887765554

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.54  E-value=2  Score=39.53  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             CcEEEecCCCChhhHHHHhHcCC---------ceEEEEeCCH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNC---------RSILGIDIDS   96 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~---------~~i~g~Dis~   96 (290)
                      .|++|+...+|+++..++++.-.         ..|+++|+-+
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~   84 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP   84 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence            78999999999999998876532         1399999854

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=82.88  E-value=4.7  Score=37.12  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.++.+||-.|+|. |..++.+|+..+...|++++-+++..+.+.
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~  201 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK  201 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            35678999998653 566677777766544889998887766653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.79  E-value=19  Score=27.95  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=24.9

Q ss_pred             CCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406           71 CNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        71 cG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~  104 (290)
                      ||.|.++..+++.+.  ...|+.+|.+++.++.+..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~   39 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE   39 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence            666777777776553  3479999999998777765

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=82.78  E-value=5.7  Score=36.97  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +++|.+||-+|.++|.--..+....+ .--||+++.|+.+=.....-+.+                              
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------------------------------  203 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------------------------------  203 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------------------------------
Confidence            47899999999999976555554433 34689999988654433322211                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC--CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS--PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           ..+|-.+..|.+.....  .-.-.|+|++- +-       ..++.+-+.-+....|++|
T Consensus       204 ---------------------RtNiiPIiEDArhP~KYRmlVgmVDvIFaD-va-------qpdq~RivaLNA~~FLk~g  254 (317)
T KOG1596|consen  204 ---------------------RTNIIPIIEDARHPAKYRMLVGMVDVIFAD-VA-------QPDQARIVALNAQYFLKNG  254 (317)
T ss_pred             ---------------------cCCceeeeccCCCchheeeeeeeEEEEecc-CC-------CchhhhhhhhhhhhhhccC
Confidence                                 22466666777652100  11235666642 11       1234455566788889999


Q ss_pred             cEEEEee
Q 047406          217 GIFVLEP  223 (290)
Q Consensus       217 G~l~i~~  223 (290)
                      |-++++.
T Consensus       255 Ghfvisi  261 (317)
T KOG1596|consen  255 GHFVISI  261 (317)
T ss_pred             CeEEEEE
Confidence            9999964

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=82.65  E-value=5.4  Score=37.90  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+|. |..++++|+.++...|+++|.+++.++.++.
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            46788999998764 5666777777765479999999988877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=82.59  E-value=6.1  Score=36.48  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             CcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          160 FDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       160 ~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+++.++.+.|.+.++. +..++-++..-..+     +   +.-...|..++..|.|||++++..-
T Consensus       156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----Y---esT~~aLe~lyprl~~GGiIi~DDY  213 (248)
T PF05711_consen  156 DDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----Y---ESTKDALEFLYPRLSPGGIIIFDDY  213 (248)
T ss_dssp             STTEEEEES-HHHHCCC-TT--EEEEEE---S-----H---HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             cccEEEECCcchhhhccCCCccEEEEEEeccc-----h---HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence            35789999999776554 23333333321111     1   3457889999999999999999643

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=82.17  E-value=6.5  Score=36.40  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.++.+||-.|+|. |..++.+|+..+...+++++.++...+.++
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~  209 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK  209 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35678898877653 667777888776447888888876665554

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PTZ00357 methyltransferase; Provisional

Probab=81.43  E-value=6.4  Score=41.67  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             cEEEecCCCChhhHHH---HhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           65 DCLDIGCNSGIITIQI---AQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        65 ~vLDiGcG~G~~~~~l---a~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .|+-+|+|-|-+....   ++..+ ..+|+++|-++.++.....+...                                
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N--------------------------------  750 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAN--------------------------------  750 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhc--------------------------------
Confidence            5899999999543322   22222 34899999997765554443211                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----------CCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----------EKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----------~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                       .++|.+.       ..-....++++..|++. +..+           -+.+|+|++= .|   .-.++.+--..+|.-+
T Consensus       751 -~eeW~n~-------~~~~G~~VtII~sDMR~-W~~pe~~~s~~~P~~~gKaDIVVSE-LL---GSFGDNELSPECLDGa  817 (1072)
T PTZ00357        751 -DPEWTQL-------AYTFGHTLEVIVADGRT-IATAAENGSLTLPADFGLCDLIVSE-LL---GSLGDNELSPECLEAF  817 (1072)
T ss_pred             -ccccccc-------cccCCCeEEEEeCcccc-cccccccccccccccccccceehHh-hh---cccccccCCHHHHHHH
Confidence             0011110       00012347888889887 2221           1369999972 22   1112233336888888


Q ss_pred             HhhcCC----CcE
Q 047406          210 WKLLRP----GGI  218 (290)
Q Consensus       210 ~~~Lkp----gG~  218 (290)
                      .+.||+    +|+
T Consensus       818 QrfLKdiqhsdGI  830 (1072)
T PTZ00357        818 HAQLEDIQLSRGI  830 (1072)
T ss_pred             HHhhhhhcccccc
Confidence            888887    787

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=81.43  E-value=1  Score=44.74  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=42.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ...+|..|.|+-||.|-+++-++++  ...|++-|++|+++++.+.++..
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~l  293 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKL  293 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccc
Confidence            4578999999999999998887776  35999999999999999998754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=81.30  E-value=5.7  Score=37.39  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|||. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            45788999999965 6677778887765 79999999988877754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=80.90  E-value=15  Score=34.85  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|++|+-+| -.-..++.+|--.-+-+|..+||++..+..-++-+..                                
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee--------------------------------  197 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE--------------------------------  197 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH--------------------------------
Confidence            4667899998 3333333332221234899999999998888776554                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC---
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG---  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg---  216 (290)
                                      .++ ++++....|+++.+|. ....||+++.-..-       .-+++..++++=-..|+.-   
T Consensus       198 ----------------~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe-------Ti~alk~FlgRGI~tLkg~~~a  253 (354)
T COG1568         198 ----------------LGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPPE-------TIKALKLFLGRGIATLKGEGCA  253 (354)
T ss_pred             ----------------hCc-cchhheeehhcccChHHHHhhCCeeecCchh-------hHHHHHHHHhccHHHhcCCCcc
Confidence                            222 3477788888875443 24689999974332       1146677777777777765   


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |++.+.
T Consensus       254 GyfgiT  259 (354)
T COG1568         254 GYFGIT  259 (354)
T ss_pred             ceEeee
Confidence            777774

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=80.79  E-value=6.7  Score=37.18  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=34.1

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+|. |..++.+|+.++...|+++|.++..++.++.
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~  227 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE  227 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            35788999998763 5566777887765579999999888777754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08293 PTGR2 Prostaglandin reductase

Probab=80.68  E-value=7  Score=36.26  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           64 KDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        64 ~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+||-.|+  |.|..++++|+.++...|++++-+++..+.+..
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~  198 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS  198 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            78998886  356788888888765479999998877666654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=80.25  E-value=7.9  Score=36.63  Aligned_cols=43  Identities=19%  Similarity=0.197  Sum_probs=34.0

Q ss_pred             ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|.+||-.|+ | .|..++++|+..+. +|++++.+++.++.++
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLK  200 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            467889999998 3 57788888888764 7999999888776664

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=80.11  E-value=3.9  Score=41.63  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=33.8

Q ss_pred             CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ++.+|+-+|+|. |..+..++..+++ .|+++|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            457999999997 5677777777665 69999999998777765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
3g07_A	292	Methyltransferase Domain Of Human Bicoid-Interactin		8e-47

>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting Protein 3 Homolog (Drosophila) Length = 292

Iteration: 1
 Score =  183 bits (465), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 159/287 (55%), Gaps = 30/287 (10%)
Query: 24  RKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQK 83
           +K +  F +GNY  YYGYR      ED R +VLK EWF G+D LD+GCN G +T+ IA K
Sbjct: 10  KKQQRKFQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACK 67
Query: 84  FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE------------VIEKG 131
           +     +G+DIDS  +  A    R+ +R   +E+ R     +E             + K 
Sbjct: 68  WGPSRXVGLDIDSRLIHSA----RQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123
Query: 132 DGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYDAI 184
                ++TA++    A       A+ ++F + V F   N+V  RD      +PE  YD +
Sbjct: 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPE--YDVV 181
Query: 185 LCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQ 244
           LCLS+TKW+HLNWGD+GL   F RI++ LRPGGI VLEPQPW SY K + ++ET   N+ 
Sbjct: 182 LCLSLTKWVHLNWGDEGLKRXFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY 241
Query: 245 NIKLYPKEFQEILLDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
            I+L P++F   L    +GF + E + +    ++  GF RP++LF K
Sbjct: 242 RIQLKPEQFSSYLTSPDVGFSSYELVATP--HNTSKGFQRPVYLFHK 286

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	6e-80
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-07
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	5e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	6e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	7e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	8e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	3e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	6e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-05
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	4e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	4e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	5e-05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	5e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	5e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	5e-05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	7e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	7e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	8e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	9e-05
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	9e-05
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	1e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-04
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-04
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	2e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-04
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	3e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	6e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	7e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	8e-04

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score =  242 bits (619), Expect = 6e-80
 Identities = 102/283 (36%), Positives = 146/283 (51%), Gaps = 18/283 (6%)

Query: 22  KKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIA 81
             +K +  F +GNY  YYGYR      ED R +VLK EWF G+D LD+GCN G +T+ IA
Sbjct: 8   GFKKQQRKFQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIA 65

Query: 82  QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASR-----VEVIEKGDGLEK 136
            K+    ++G+DIDS  +  A  ++R  +  E     +           E          
Sbjct: 66  CKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125

Query: 137 NVTAAQEEKKAISRNCSPA----ERNLFDIVSFKQENFVHGRDSP----EKYYDAILCLS 188
              +    +  I+    P          + V F   N+V  RD         YD +LCLS
Sbjct: 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS 185

Query: 189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL 248
           +TKW+HLNWGD+GL  +F RI++ LRPGGI VLEPQPW SY K + ++ET   N+  I+L
Sbjct: 186 LTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL 245

Query: 249 YPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
            P++F   L    +GF + E + +    ++  GF RP++LF K
Sbjct: 246 KPEQFSSYLTSPDVGFSSYELVATPH--NTSKGFQRPVYLFHK 286

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 75/231 (32%)

Query: 55  VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEH 114
            +     E  D LD+G  +G+++  + +K+   +   +D+    +  A            
Sbjct: 37  SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIA------------ 84

Query: 115 NEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR 174
            + R     +V+ IE                               D   +         
Sbjct: 85  -KNRFRGNLKVKYIEA------------------------------DYSKYD-------- 105

Query: 175 DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV-------------- 220
              E+ YD ++       +     D+    L+ R + +L+  GIF+              
Sbjct: 106 --FEEKYDMVVSALSIHHLE----DEDKKELYKRSYSILKESGIFINADLVHGETAFIEN 159

Query: 221 LEPQPWVSYEKNRRVS-ETTATNFQNIKL---YPKEFQEILLDKIGFRTVE 267
           L    W  Y +N  ++ E  A  ++  KL        Q   L + GFR V 
Sbjct: 160 LNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVS 210

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 56/160 (35%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
            G   LD+GC  G   +++A   + R + GI I   +V  A                   
Sbjct: 61  SGDRVLDVGCGIGKPAVRLATARDVR-VTGISISRPQVNQA---------NARATAAG-L 109

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
           A+RV      D ++                  P E   FD V +  E+  H  D      
Sbjct: 110 ANRVTF-SYADAMDL-----------------PFEDASFDAV-WALESLHHMPDRG---- 146

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
                                      + ++LRPGG   +
Sbjct: 147 ----------------------RALREMARVLRPGGTVAI 164

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 22/188 (11%), Positives = 45/188 (23%), Gaps = 31/188 (16%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
                D+G  +G   + +A +     +   +        A        R+       A +
Sbjct: 37  ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFA-------RRSLELPDNAAFS 89

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYD 182
           +R+EV+E  D   +     +                 F  V         G         
Sbjct: 90  ARIEVLE-ADVTLRAKARVEAGLPDEH----------FHHVIMNPPYNDAGDRRTPDALK 138

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATN 242
           A               +            ++  GG   L  +P    E    +     + 
Sbjct: 139 AEAHAM---------TEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE----IIAACGSR 185

Query: 243 FQNIKLYP 250
           F  +++  
Sbjct: 186 FGGLEITL 193

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 45/208 (21%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
           EG   LD+GC +G      ++       ++G+D+  N++  A                R 
Sbjct: 83  EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA----------------RK 126

Query: 121 NASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY 180
                     G     NV       K    N + AE       S                
Sbjct: 127 YVEYHAEKFFGSPSRSNV----RFLKGFIENLATAEPEGVPDSSV--------------- 167

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG-IFVLEPQPWVSYEKNRRVSETT 239
            D ++   V      N   +  + LF  I ++LR GG ++  +        +  +     
Sbjct: 168 -DIVISNCV-----CNLSTN-KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL 220

Query: 240 ATNFQNIKLYPKEFQEILLDKIGFRTVE 267
                   LY ++F+  L+ + GFR V 
Sbjct: 221 YGECLGGALYLEDFRR-LVAEAGFRDVR 247

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 64/209 (30%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
           E    LDIG   G   + I +K+      GIDI SN V  A                R +
Sbjct: 55  ENSKVLDIGSGLGGGCMYINEKYGAH-THGIDICSNIVNMA--------------NERVS 99

Query: 122 AS-RVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVH-GRDSPEK 179
            + ++   E  D L K                     N FD++ + ++  +    ++  K
Sbjct: 100 GNNKIIF-EANDILTK-----------------EFPENNFDLI-YSRDAILALSLENKNK 140

Query: 180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239
            +                          + +K L+P G  ++    + + EK     E  
Sbjct: 141 LFQ-------------------------KCYKWLKPTGTLLIT--DYCATEKENWDDEFK 173

Query: 240 ATNFQNI-KLYPKEFQEILLDKIGFRTVE 267
               Q    L   E    +L    F+ V 
Sbjct: 174 EYVKQRKYTLITVEEYADILTACNFKNVV 202

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 28/227 (12%), Positives = 50/227 (22%), Gaps = 78/227 (34%)

Query: 62  EGKDCLDIGCNSGIITIQIAQK--FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRR 119
            G     + C      + +        + ++GID D   +  A                 
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGA----------------T 160

Query: 120 ANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSP 177
             A+          L   +T                                        
Sbjct: 161 RLAAG-------HALAGQIT------------------------------LHRQDAWKLD 183

Query: 178 -EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL----------EPQPW 226
             + YD +    +         D  +  L+ R W+ L+PGG  V              PW
Sbjct: 184 TREGYDLLTSNGL---NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPW 240

Query: 227 VSYEKNRRVSETTATNFQNI------KLYPKEFQEILLDKIGFRTVE 267
                +    +     F  +       L         L++ GF  + 
Sbjct: 241 DMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR 287

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 24/170 (14%), Positives = 42/170 (24%), Gaps = 57/170 (33%)

Query: 52  RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVR 111
           +      E  +     DIGC +G  T+ +A     + I GID+  + +            
Sbjct: 36  KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQ-ITGIDLFPDFIEIF--------- 85

Query: 112 TEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFV 171
                    NA                                 + N  D V     +  
Sbjct: 86  -------NENA--------------------------------VKANCADRVKGITGSM- 105

Query: 172 HGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
                  +  D I           N G +  +  + +    L+ GG   +
Sbjct: 106 DNLPFQNEELDLIWSEGAI----YNIGFERGMNEWSK---YLKKGGFIAV 148

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 49/159 (30%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
             K  +D+GC  G +   + +  +   I G+D+  + +  A   L+     E   KR   
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR--- 85

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
                                                    +S  Q + V+ RD     Y
Sbjct: 86  -----------------------------------------ISLFQSSLVY-RDKRFSGY 103

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220
           DA   + V    HL+  ++ L      +++  RP  + V
Sbjct: 104 DAATVIEV--IEHLD--ENRLQAFEKVLFEFTRPQTVIV 138

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 49/158 (31%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
            +  +D+GC  G +   + +      I G+D+    +  A   L ++    +  +R    
Sbjct: 30  ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWER---- 85

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYD 182
                                                   +   Q    + +D     YD
Sbjct: 86  ----------------------------------------LQLIQGALTY-QDKRFHGYD 104

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220
           A   + V + +        L      +++  +P  + V
Sbjct: 105 AATVIEVIEHL----DLSRLGAFERVLFEFAQPKIVIV 138

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 58/159 (36%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
             + L+IGC +G  T ++A    C+ +  ID+                            
Sbjct: 52  VSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVM--------------------------- 82

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYD 182
                        + +  A +  K  S             +S+   + +  + S  + +D
Sbjct: 83  ------------PRAIGRACQRTKRWSH------------ISWAATDIL--QFSTAELFD 116

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
            I+   V  ++        + T    + K+L PGG  V 
Sbjct: 117 LIVVAEVLYYLE---DMTQMRTAIDNMVKMLAPGGHLVF 152

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 22/161 (13%), Positives = 40/161 (24%), Gaps = 57/161 (35%)

Query: 61  FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
            E     DIGC +G  T+ +A     + + G+D  S  +                     
Sbjct: 45  TEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIF----------------NR 87

Query: 121 NASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY 180
           NA                                 +  L + V+    +         + 
Sbjct: 88  NA--------------------------------RQSGLQNRVTGIVGSM-DDLPFRNEE 114

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
            D I           N G +  +  + +    L+ GG   +
Sbjct: 115 LDLIWSEGAI----YNIGFERGLNEWRK---YLKKGGYLAV 148

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 56/160 (35%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
                LD+G   G     + +KF    I  ++I   +              E+N +    
Sbjct: 82  RQAKGLDLGAGYGGAARFLVRKFGVS-IDCLNIAPVQNKRN---------EEYNNQAGL- 130

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
           A  + V + G  LE                  P E N +D + + Q+ F+H   SP+K  
Sbjct: 131 ADNITV-KYGSFLEI-----------------PCEDNSYDFI-WSQDAFLH---SPDKL- 167

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
                                  +F    ++L+P G+  +
Sbjct: 168 ----------------------KVFQECARVLKPRGVMAI 185

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 63/214 (29%)

Query: 61  FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
                C+DIG   G ++I +A++ +   I  +D   +    A                  
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIA----------------LK 84

Query: 121 NASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY 180
           N +          L   +   Q +   I     P E N  D++                 
Sbjct: 85  NIAD-------ANLNDRIQIVQGDVHNI-----PIEDNYADLIVS---RGS--------- 120

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL-------EPQPWVSYEKNR 233
                       +   W D  + T F  I+++L+ GG   +       E +  +S E  R
Sbjct: 121 ------------VF-FWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIR 165

Query: 234 RVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE 267
           +  +    N +NI     E  + +LD+IG  + E
Sbjct: 166 KNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 22/159 (13%), Positives = 40/159 (25%), Gaps = 54/159 (33%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
               +D  C +G  T  ++Q F    ++G+D+  + +  A               +   A
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIA--------------AKENTA 100

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYD 182
           + +      DGL                   P +                         D
Sbjct: 101 ANISY-RLLDGLV------------------PEQAAQIHSEIG----------------D 125

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
           A + +      H     +    L   +  LL   G   L
Sbjct: 126 ANIYMRTG--FHH-IPVEKRELLGQSLRILLGKQGAMYL 161

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/213 (12%), Positives = 51/213 (23%), Gaps = 69/213 (32%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
              + L+ G  +G +T ++      R++ GI+        A               +   
Sbjct: 45  SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIA---------------KEKL 87

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
                + E GD                                           S     
Sbjct: 88  PKEFSITE-GD----------------------FLSFEVP-------------TS----I 107

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE---PQPWVSYEKNRRVSET 238
           D I+       +     DD       +  +LL  GG  V          +Y+K    ++ 
Sbjct: 108 DTIVSTYAFHHLT----DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQ 163

Query: 239 TATNFQNIKLYPKEFQEI-----LLDKIGFRTV 266
              +     L  + +  I     + +  GF   
Sbjct: 164 RGFHQLANDLQTEYYTRIPVMQTIFENNGFHVT 196

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 38/249 (15%), Positives = 66/249 (26%), Gaps = 74/249 (29%)

Query: 32  FGNYKNYYGYRIGQGLNEDPRFKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
           F  Y      R  +GL     +  LKK    F  K  LD+GC  G   I  A+    + +
Sbjct: 14  FEQYSQMP--RSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKV 70

Query: 90  LGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAIS 149
           LGID+    + +A              KR+  +  V                        
Sbjct: 71  LGIDLSERMLTEA--------------KRKTTSPVVCYE--------------------- 95

Query: 150 RNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI 209
                 E                        Y+ +L         L++       +  ++
Sbjct: 96  --QKAIEDIAI----------------EPDAYNVVLSSLA-----LHYIAS-FDDICKKV 131

Query: 210 WKLLRPGGIFVL---------EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDK 260
           +  L+  G F+          + +     ++           + N  +    F    + K
Sbjct: 132 YINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQK 191

Query: 261 IGFRTVEDI 269
              RTV   
Sbjct: 192 Y-HRTVTTY 199

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 50  DPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
             R + +     +G   LD+G +   + I + Q   C   +  ++ +     A       
Sbjct: 9   SKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSA------- 61

Query: 110 VRTEHNEKRRANASRVEVIEKGDGLE 135
                N       S+++V    +GL 
Sbjct: 62  ---LKNVSEHGLTSKIDVRL-ANGLS 83

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 62/156 (39%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
            D+GC  G  T  +  ++    I GID D + +  A                        
Sbjct: 38  YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----------------ADRLPNTN 81

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
             +                               D+ ++K          P +  D +  
Sbjct: 82  FGKA------------------------------DLATWK----------PAQKADLLYA 101

Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222
            +V       W  D  + +  ++   L  GG+  ++
Sbjct: 102 NAV-----FQWVPD-HLAVLSQLMDQLESGGVLAVQ 131

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 71/217 (32%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
           + +  LD+GC  G +   +A +      +G+D D   V  A               R A 
Sbjct: 52  QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAA---------------RAAG 94

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
           A  V +                           AE  +     +                
Sbjct: 95  AGEVHLASYAQL---------------------AEAKVPVGKDY---------------- 117

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE-PQPWVSYEKNRRVS---- 236
           D I          L   D  +I L   +  LL PGG  V++   PW   + + +      
Sbjct: 118 DLICANFA-----LLHQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREE 170

Query: 237 --ETTATNFQNIKLYPKEFQEI--LLDKIGFRTVEDI 269
                A ++Q +  Y +        LD  G R +  +
Sbjct: 171 SFAGFAGDWQPMPWYFRTLASWLNALDMAGLR-LVSL 206

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 66/168 (39%)

Query: 56  LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHN 115
           +++   +     D+G  SGI+ I  A K   +S+L  DI     +               
Sbjct: 54  IERAMVKPLTVADVGTGSGILAI-AAHKLGAKSVLATDISD--ES--------------- 95

Query: 116 EKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD 175
                                 +TAA+E       N   A  N    ++ ++ + +   D
Sbjct: 96  ----------------------MTAAEE-------N---AALNGIYDIALQKTSLLADVD 123

Query: 176 SPEKYYDAILC--LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
                +D I+   L+           + L+ L  ++   L   G  + 
Sbjct: 124 GK---FDLIVANILA-----------EILLDLIPQLDSHLNEDGQVIF 157

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 50  DPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
             R + +     + +   DIG +   +     +       +  ++       A   +   
Sbjct: 9   SKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV--- 65

Query: 110 VRTEHNEKRRANASRVEVIEKGDGLE 135
                  +      +++V + G+GL 
Sbjct: 66  -------RSSGLTEQIDVRK-GNGLA 83

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 17/68 (25%)

Query: 61  FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
             G+  +D G  +GI+    +      S+   DID + +  A                + 
Sbjct: 50  IGGRSVIDAGTGNGILAC-GSYLLGAESVTAFDIDPDAIETA----------------KR 92

Query: 121 NASRVEVI 128
           N   V  +
Sbjct: 93  NCGGVNFM 100

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 31/161 (19%), Positives = 45/161 (27%), Gaps = 59/161 (36%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
            G   LD+G  SG +    A+        GID+ S   A A              KRRA 
Sbjct: 36  PGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQA--------------KRRA- 79

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKY 180
                                             E  + + V F   +          + 
Sbjct: 80  ---------------------------------EELGVSERVHFIHNDA---AGYVANEK 103

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
            D   C+  T WI    G          + + L+PGGI ++
Sbjct: 104 CDVAACVGAT-WI---AGG--FAGAEELLAQSLKPGGIMLI 138

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 75/221 (33%)

Query: 67  LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
           L++   +G  T  ++       +  +D  +  +A+A                R     VE
Sbjct: 51  LELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEA---------------GRHGLDNVE 93

Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
             +                               D+  +          +P++ +DA+  
Sbjct: 94  FRQ------------------------------QDLFDW----------TPDRQWDAVFF 113

Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTA------ 240
                    +  DD     +  +   + PGG+              ++            
Sbjct: 114 AHWL----AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169

Query: 241 ----TNFQNIKLY--PKEFQEILLDKIGFR-TVEDIGSGGL 274
                +F+ +K++  P E  E  L  +G+  +V+++  G L
Sbjct: 170 LQDGRSFRIVKVFRSPAELTE-RLTALGWSCSVDEVHPGFL 209

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
               +D+   +GII + ++ +   + I+G++I       A          + +       
Sbjct: 50  KGKIIDLCSGNGIIPLLLSTRTKAK-IVGVEIQERLADMA----------KRSVAYNQLE 98

Query: 123 SRVEVIE 129
            ++E+IE
Sbjct: 99  DQIEIIE 105

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 26/208 (12%), Positives = 45/208 (21%), Gaps = 64/208 (30%)

Query: 60  WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRR 119
                  LD G   G IT  +  K        ++   + +             E  ++  
Sbjct: 91  GHGTSRALDCGAGIGRITKNLLTKLYAT-TDLLEPVKHML-------------EEAKREL 136

Query: 120 ANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK 179
           A     + I                        +  E                    P  
Sbjct: 137 AGMPVGKFI-----------------------LASMETATL----------------PPN 157

Query: 180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239
            YD I+     +W  +   D   +  F    + L P G            E         
Sbjct: 158 TYDLIVI----QWTAIYLTDADFVKFFKHCQQALTPNGYIFF-------KENCSTGDRFL 206

Query: 240 ATNFQNIKLYPKEFQEILLDKIGFRTVE 267
                +         + L ++ G R V+
Sbjct: 207 VDKEDSSLTRSDIHYKRLFNESGVRVVK 234

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 63/186 (33%)

Query: 39  YGYRIGQGLNEDPRFKVLKKEWFEGKDC--LDIGCNSGIITIQIAQKFNCRSILGIDIDS 96
               +G  ++ +   +VL + W  G D   LD+G  +G  T  +A       I G++  +
Sbjct: 16  AEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL--GHQIEGLEPAT 73

Query: 97  NRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAE 156
             V  A                R     V     G                         
Sbjct: 74  RLVELA----------------RQTHPSVTFHH-GT------------------------ 92

Query: 157 RNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216
             + D+                K +  +L       IH+  G+  L    + +   +  G
Sbjct: 93  --ITDL------------SDSPKRWAGLLAWYS--LIHMGPGE--LPDALVALRMAVEDG 134

Query: 217 GIFVLE 222
           G  ++ 
Sbjct: 135 GGLLMS 140

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 50  DPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
             R +++     +G   LD+G +   + I++ ++   +S +  ++       A       
Sbjct: 3   SKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSA------- 55

Query: 110 VRTEHNEKRRANASRVEVIEKGDGLE 135
                N +      +++V    +GL 
Sbjct: 56  ---VKNVEAHGLKEKIQVRL-ANGLA 77

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 32/151 (21%)

Query: 154 PAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL 213
            A  +  + +     N +         +DA+            + ++ +I++  R+ + +
Sbjct: 222 TAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM----SQFLDCFSEEEVISILTRVAQSI 277

Query: 214 RPGG-IFVLEPQPWVSYEKNRRVSETTATNFQNIKLY-------------PKEFQEILLD 259
                ++++E         +R+  ET +     I LY               +     ++
Sbjct: 278 GKDSKVYIMETLW------DRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIR-CIE 330

Query: 260 KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
             G    E   + GL  S       I   R 
Sbjct: 331 NAGLEVEEIQDNIGLGHS-------ILQCRL 354

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 65/225 (28%)

Query: 52  RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVR 111
           RF     E    K  LD G    +  + I  +   +   GI+I   ++  A         
Sbjct: 13  RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLKKA--------- 62

Query: 112 TEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFV 171
              + +     +    I KGD  +                           + FK E+  
Sbjct: 63  ENFSRENNFKLN----ISKGDIRK---------------------------LPFKDESM- 90

Query: 172 HGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE--PQPWVSY 229
                       +         H+   D  +      I ++L+PGG+  +         Y
Sbjct: 91  ----------SFVYSYGTI--FHMRKND--VKEAIDEIKRVLKPGGLACINFLTTKDERY 136

Query: 230 EKNRRVSETTATNFQN----IKLY--PKEFQEILLDKIGFRTVED 268
            K  ++ E      +     I  Y   +E  +     +     ED
Sbjct: 137 NKGEKIGEGEFLQLERGEKVIHSYVSLEEADK-YFKDMKVLFKED 180

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/211 (10%), Positives = 47/211 (22%), Gaps = 69/211 (32%)

Query: 67  LDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRV 125
           +D+    G    Q+ ++       +    D     D                      RV
Sbjct: 184 IDLAGGHGTYLAQVLRRHPQLTGQI---WDLPTTRD---------AARKTIHAHDLGGRV 231

Query: 126 EVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAIL 185
           E  E  +                                      +  R+      D ++
Sbjct: 232 EFFE-KN-------------------------------------LLDARNFEGGAADVVM 253

Query: 186 CLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG-IFVLEPQPWVSYEKNRRVSETTA---- 240
                      +       +      L++PGG + +L      +   +R     +A    
Sbjct: 254 L----NDCLHYFDAREAREVIGHAAGLVKPGGALLILTM----TMNDDRVTPALSADFSL 305

Query: 241 ---TNFQNIKLY-PKEFQEILLDKIGFRTVE 267
               N  + +L+        ++   G    E
Sbjct: 306 HMMVNTNHGELHPTPWIAG-VVRDAGLAVGE 335

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 60/160 (37%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRAN 121
           +    +D+GC +G +T+++A +   R +  ID +   ++           TE N +R   
Sbjct: 33  KNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAIS----------TTEMNLQRHGL 80

Query: 122 ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYY 181
              V ++E GD                      A   L  I                   
Sbjct: 81  GDNVTLME-GD----------------------APEALCKIPDI---------------- 101

Query: 182 DAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
           D  +                L  +   I   L+PGG  ++
Sbjct: 102 DIAVV---------GGSGGELQEILRIIKDKLKPGGRIIV 132

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/189 (14%), Positives = 47/189 (24%), Gaps = 60/189 (31%)

Query: 34  NYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGID 93
           NY   +      G +     +++      G   LD GC  G I   ++++     +LG D
Sbjct: 18  NYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQG--HDVLGTD 75

Query: 94  IDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCS 153
           +D   +  A                + +      +  GD                     
Sbjct: 76  LDPILIDYA----------------KQDFPEARWVV-GDL-------------------- 98

Query: 154 PAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL 213
                                   E  +D I+         L   +DG       I + L
Sbjct: 99  ---SVD---------------QISETDFDLIVSAGNVMG-FLA--EDGREPALANIHRAL 137

Query: 214 RPGGIFVLE 222
              G  V+ 
Sbjct: 138 GADGRAVIG 146

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 26/160 (16%), Positives = 42/160 (26%), Gaps = 49/160 (30%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
                +D GC SG +   +       ++I+G+DI    +A A   L          K   
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHV-----KLNKEAC 775

Query: 121 NASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY 180
           N     + +           +  E                              DS    
Sbjct: 776 NVKSATLYD----------GSILE-----------------------------FDSRLHD 796

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220
            D   CL V    H+   +D       ++  L  P  + V
Sbjct: 797 VDIGTCLEV--IEHME--EDQACEFGEKVLSLFHPKLLIV 832

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 65/165 (39%)

Query: 63  GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA 122
           G+  LD+GC +G +T +IAQ      +LG D  +  +  A                R N 
Sbjct: 58  GEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKA----------------RQNY 99

Query: 123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYD 182
             +      D                        RN                   +K  D
Sbjct: 100 PHLHFDV-ADA-----------------------RNF----------------RVDKPLD 119

Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE-PQPW 226
           A+   ++  W+               I + L+ GG FV E     
Sbjct: 120 AVFSNAMLHWV------KEPEAAIASIHQALKSGGRFVAEFGGKG 158

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 62/183 (33%)

Query: 41  YRIGQGLNEDPRFKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNR 98
            R  +GL+    +  L+       G   +D+GC  G       +      +LG+D+    
Sbjct: 20  GRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKM 78

Query: 99  VADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERN 158
           +A A              +     + +                           +  ++ 
Sbjct: 79  LARA--------------RAAGPDTGITYE-----------------------RADLDKL 101

Query: 159 LFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218
                             P+  +D            L++ +D +  LF  + + L PGG 
Sbjct: 102 HL----------------PQDSFDLAYSSLA-----LHYVED-VARLFRTVHQALSPGGH 139

Query: 219 FVL 221
           FV 
Sbjct: 140 FVF 142

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 6   MENKVEEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWF---- 61
           + ++V++++  +  +       ++        Y+  R       D   K+ ++ WF    
Sbjct: 3   LGSEVKKKKNKKKNKKVNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTP 62

Query: 62  ---------------EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106
                          +    +D  C  G  TIQ A       ++ IDID  ++A A  + 
Sbjct: 63  EKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNA 120

Query: 107 R 107
            
Sbjct: 121 E 121

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADA 102
            G   L+ GC  G  T+ +A+      I  IDI    +  A
Sbjct: 37  PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 50/161 (31%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
           E K  +D+GC  G  T+Q+AQ+      I+G D+ +  +  A                  
Sbjct: 36  ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA------------------ 77

Query: 121 NASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY 180
                         E     + +  K +S   S ++             F+      ++ 
Sbjct: 78  --------------EVIKEGSPDTYKNVSFKISSSD----------DFKFLGADSVDKQK 113

Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221
            D I  +    W                 +  LR  G   +
Sbjct: 114 IDMITAVECAHWFDFE-------KFQRSAYANLRKDGTIAI 147

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 52/192 (27%)

Query: 35  YKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
           ++ Y G    +          L ++       LD+ C +G+ +I + ++    S+  +D 
Sbjct: 31  WQLYIGDTRSRTAEYKAWLLGLLRQ-HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDA 87

Query: 95  DSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSP 154
               +  A               +     R E                            
Sbjct: 88  SDKMLKYA--------------LKERWNRRKEP--------------------------- 106

Query: 155 AERNLFDIVSFKQENFVHG--RDSPEKYYDAILCL--SVTKWIHLNWGDDGLITLFMRIW 210
                FD    ++ N++           +DA++CL  S                    I 
Sbjct: 107 ----AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIA 162

Query: 211 KLLRPGGIFVLE 222
            ++RPGG+ V++
Sbjct: 163 SMVRPGGLLVID 174

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 64/219 (29%)

Query: 54  KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTE 113
            +++    E    LD+ C +G       ++F      G+++  + +  A           
Sbjct: 32  DLVRSRTPEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHA----------- 78

Query: 114 HNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG 173
                R       + +                               D+  F        
Sbjct: 79  -----RKRLPDATLHQG------------------------------DMRDF-------- 95

Query: 174 RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNR 233
                + + A++ +  +  +      + L        + L PGG+ V+EP  +     + 
Sbjct: 96  --RLGRKFSAVVSMFSS--VGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADG 151

Query: 234 RVSETTATN----FQNIKLYPKEFQEILLDKIGFRTVED 268
            VS             +    +E     ++         
Sbjct: 152 WVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPG 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.97
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.78
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.75
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.74
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.73
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.72
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.72
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.71
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.71
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.7
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.7
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.7
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.7
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.7
3ocj_A	305	Putative exported protein; structural genomics, PS	99.7
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.7
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.7
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.69
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.69
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.68
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.68
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.68
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.68
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.67
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.67
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.67
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.67
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.66
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.66
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.65
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.65
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.64
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.64
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.64
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.64
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.64
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.64
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.63
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.63
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.63
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.63
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.62
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.62
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.62
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.62
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.62
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.62
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.62
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.61
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.6
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.6
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.59
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.59
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.59
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.59
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.58
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.57
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.57
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.57
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.57
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.57
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.57
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.57
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.56
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.56
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.56
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.55
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.55
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.54
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.54
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.54
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.54
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.53
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.53
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.53
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.53
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.52
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.52
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.52
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.52
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.52
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.52
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.51
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.51
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.5
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.5
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.5
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.49
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.49
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.49
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.48
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.47
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.45
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.45
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.45
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.44
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.44
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.43
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.43
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.43
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.42
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.42
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.42
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.41
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.41
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.41
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.41
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.4
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.4
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.4
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.4
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.39
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.38
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.38
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.37
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.37
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.37
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.37
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.36
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.36
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.35
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.35
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.35
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.35
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.35
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.34
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.34
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.33
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.33
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.33
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.33
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.33
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.32
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.32
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.31
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.31
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.31
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.3
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.3
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.3
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.3
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.29
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.29
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.29
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.29
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.29
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.28
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.27
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.27
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.27
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.27
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.26
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.25
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.25
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.25
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.25
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.24
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.24
2o07_A	304	Spermidine synthase; structural genomics, structur	99.24
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.23
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.22
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.22
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.21
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.2
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.2
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.2
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.2
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.19
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.19
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.19
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.19
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.18
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.18
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.17
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.15
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.15
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.14
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.14
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.14
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.13
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.12
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.12
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.11
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.11
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.1
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.08
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.07
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.07
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.06
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.06
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.05
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.05
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.02
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.02
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.01
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.99
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.98
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.94
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.93
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.92
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.92
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.9
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.87
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.86
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.86
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.85
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.85
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.85
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.83
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.82
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.81
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.77
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.74
3lkd_A	542	Type I restriction-modification system methyltrans	98.67
3khk_A	544	Type I restriction-modification system methylation	98.66
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.66
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.62
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.61
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.61
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.61
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.59
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.58
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.45
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.44
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.42
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.41
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.4
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.37
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.37
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.36
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.33
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.3
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.26
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.24
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.21
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.11
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.1
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.07
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.07
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.95
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.87
3ufb_A	530	Type I restriction-modification system methyltran	97.86
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.79
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.76
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.72
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.62
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.44
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.44
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.42
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.31
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.27
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.12
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.09
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.48
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.16
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.1
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.04
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.01
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.01
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.79
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.61
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.52
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.42
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.35
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.11
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.98
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.87
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.82
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.8
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.7
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.64
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.59
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.47
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.41
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.37
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.36
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.32
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.26
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.17
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.15
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.12
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.1
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.04
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.93
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.9
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.9
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.76
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.7
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.4
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.79
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.75
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.71
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.68
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	92.63
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	92.55
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.41
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.24
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.08
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.61
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	91.55
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.43
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.41
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.28
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.27
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.2
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.16
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	90.92
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	90.73
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.43
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.4
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.05
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.99
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	89.22
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	89.14
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	88.93
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	88.26
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	88.05
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	88.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	87.81
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	87.3
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	87.25
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.16
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	86.97
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.69
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	86.43
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	86.3
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	85.93
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	85.78
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	85.73
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	85.56
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	84.56
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	84.32
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	84.04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	83.85
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	83.19
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	81.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	81.64

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.97  E-value=4.8e-31  Score=242.48  Aligned_cols=257  Identities=40%  Similarity=0.751  Sum_probs=158.8

Q ss_pred             hhcCCCccccccccccccccccCCCCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406           23 KRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADA  102 (290)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a  102 (290)
                      .++....|.+|||..||+++...  ..++++..+.+.+.++.+|||||||+|.++..++..++..+|+|+|+|+.+++.|
T Consensus         9 ~~~~~~~f~~gny~~yy~~r~~~--~~~~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A   86 (292)
T 3g07_A            9 FKKQQRKFQYGNYCKYYGYRNPS--CEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSA   86 (292)
T ss_dssp             ---------------------------CGGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHH
T ss_pred             ccccchhcccCChhhhccccCCc--chhHHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            34455789999999999998744  7778888888888899999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHhhhhh-hhhhhhchhhhhhccCCcchhhhhHHH-HHHhhh-------------cCCCccccCcCcceeEee
Q 047406          103 YWHLRKIVRTEHNE-KRRANASRVEVIEKGDGLEKNVTAAQE-EKKAIS-------------RNCSPAERNLFDIVSFKQ  167 (290)
Q Consensus       103 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~i~~~~  167 (290)
                      ++++.......... .+-......+     .+ +++.+.... +....+             ............++.|.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~  160 (292)
T 3g07_A           87 RQNIRHYLSEELRLPPQTLEGDPGA-----EG-EEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVT  160 (292)
T ss_dssp             HHTC---------------------------------------------------------CCSSTTCCSSTTTTEEEEE
T ss_pred             HHHHHhhhhhhcccccccccccccc-----cc-ccccccccccccccchhhhccCccccccccccccccccccccceEEe
Confidence            99866532110000 0000000000     00 000000000 000000             000001122335799999


Q ss_pred             cccccCC----CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccc
Q 047406          168 ENFVHGR----DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNF  243 (290)
Q Consensus       168 ~d~~~~~----~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~  243 (290)
                      .|+....    +...+.||+|+|..+++|+|++|+++++..++.+++++|+|||+|++++++|.+|.....+...+..++
T Consensus       161 ~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~  240 (292)
T 3g07_A          161 GNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNY  240 (292)
T ss_dssp             CCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHH
T ss_pred             cccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhh
Confidence            9997632    234688999999999999999999999999999999999999999999999999988878887888888


Q ss_pred             cccccCchhHHHHHHHH--cCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          244 QNIKLYPKEFQEILLDK--IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       244 ~~~~~~~~~~~~~ll~~--~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                      ..+.+.+++|.. +|.+  +||+.++++..  ...+..+|.|++.+|+|
T Consensus       241 ~~~~~~p~~~~~-~L~~~~~GF~~~~~~~~--~~~~~~g~~r~i~~~~k  286 (292)
T 3g07_A          241 YRIQLKPEQFSS-YLTSPDVGFSSYELVAT--PHNTSKGFQRPVYLFHK  286 (292)
T ss_dssp             HHCCCCGGGHHH-HHTSTTTCCCEEEEC-------------CCCEEEEC
T ss_pred             hcEEEcHHHHHH-HHHhcCCCceEEEEecc--CCCCCCCccceEEEEEc
Confidence            888999999988 5666  99999999886  45567899999999997

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.78  E-value=2.1e-18  Score=156.73  Aligned_cols=112  Identities=17%  Similarity=0.278  Sum_probs=93.0

Q ss_pred             hhhccCCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           57 KKEWFEGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        57 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      ...+.+|.+|||||||+|..+..+++.++  +.+|+|+|+|+.+++.|++++..                          
T Consensus        65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~--------------------------  118 (261)
T 4gek_A           65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------------------------  118 (261)
T ss_dssp             HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT--------------------------
T ss_pred             HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh--------------------------
Confidence            34467899999999999999999998753  46899999999999999997654                          


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                            .+...++++.+.|+.+ +  +.+.||+|+|..+++|++    .++...+|++++++|+
T Consensus       119 ----------------------~~~~~~v~~~~~D~~~-~--~~~~~d~v~~~~~l~~~~----~~~~~~~l~~i~~~Lk  169 (261)
T 4gek_A          119 ----------------------YKAPTPVDVIEGDIRD-I--AIENASMVVLNFTLQFLE----PSERQALLDKIYQGLN  169 (261)
T ss_dssp             ----------------------SCCSSCEEEEESCTTT-C--CCCSEEEEEEESCGGGSC----HHHHHHHHHHHHHHEE
T ss_pred             ----------------------hccCceEEEeeccccc-c--cccccccceeeeeeeecC----chhHhHHHHHHHHHcC
Confidence                                  3344569999999876 3  346799999999998774    3566789999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      |||+|++..
T Consensus       170 pGG~lii~e  178 (261)
T 4gek_A          170 PGGALVLSE  178 (261)
T ss_dssp             EEEEEEEEE
T ss_pred             CCcEEEEEe
Confidence            999999954

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=1.2e-17  Score=147.91  Aligned_cols=153  Identities=17%  Similarity=0.185  Sum_probs=116.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|..+..+++..+. +|+|+|+|+.+++.|+.++..                               
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~-------------------------------   91 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVK-------------------------------   91 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            467889999999999999999998765 999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+.+.|+.+ ++.+.++||+|+|..+++|+       +...++.++.++|+|||++
T Consensus        92 -----------------~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~-------~~~~~l~~~~~~L~pgG~l  146 (257)
T 3f4k_A           92 -----------------ANCADRVKGITGSMDN-LPFQNEELDLIWSEGAIYNI-------GFERGMNEWSKYLKKGGFI  146 (257)
T ss_dssp             -----------------TTCTTTEEEEECCTTS-CSSCTTCEEEEEEESCSCCC-------CHHHHHHHHHTTEEEEEEE
T ss_pred             -----------------cCCCCceEEEECChhh-CCCCCCCEEEEEecChHhhc-------CHHHHHHHHHHHcCCCcEE
Confidence                             3445568999999955 56667899999999998654       3578999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....|............+...+.. .....++.+ +++++||++++....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~aGf~~v~~~~~  196 (257)
T 3f4k_A          147 AVSEASWFTSERPAEIEDFWMDAYPE-ISVIPTCID-KMERAGYTPTAHFIL  196 (257)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHCTT-CCBHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEEEeeccCCCChHHHHHHHHHhCCC-CCCHHHHHH-HHHHCCCeEEEEEEC
Confidence            99876554332222222223323332 234455555 899999999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.75  E-value=3.2e-17  Score=142.35  Aligned_cols=173  Identities=21%  Similarity=0.313  Sum_probs=117.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+.++..                                
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------   75 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI--------------------------------   75 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG--------------------------------
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            467899999999999999999877667999999999999999987643                                


Q ss_pred             HHHHHHhhhcCCCccccCcC----cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLF----DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                      .++.    .++.+.+.|+.. .+.+.++||+|+|..+++|+.    ++....+++++.++|+||
T Consensus        76 ----------------~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~~----~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A           76 ----------------DRLPEMQRKRISLFQSSLVY-RDKRFSGYDAATVIEVIEHLD----ENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             ----------------GGSCHHHHTTEEEEECCSSS-CCGGGTTCSEEEEESCGGGCC----HHHHHHHHHHHHTTTCCS
T ss_pred             ----------------hccccccCcceEEEeCcccc-cccccCCCCEEEEHHHHHhCC----HHHHHHHHHHHHHhhCCC
Confidence                            1111    258899999844 344567899999999997662    456689999999999999


Q ss_pred             cEEEEeeCCCchhhhh-hhhhhhhhcccc-ccccCchhHHH---HHHHHcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          217 GIFVLEPQPWVSYEKN-RRVSETTATNFQ-NIKLYPKEFQE---ILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~---~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                      |+++..+...  +... ..+......+.. ...+.++++.+   .+++++||++. ..+.|.. ....++...|-+|+|
T Consensus       135 G~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~-~~~~g~~-~~~~g~~~qi~~~~~  209 (219)
T 3jwg_A          135 TVIVSTPNKE--YNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR-FLQIGEI-DDEFGSPTQMGVFTL  209 (219)
T ss_dssp             EEEEEEEBGG--GGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE-EEEESCC-CTTSCCSEEEEEEEE
T ss_pred             EEEEEccchh--hhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE-EEecCCc-cccCCCCeEEEEEec
Confidence            9777654311  1000 001100111111 22356666652   47899999754 4433222 335677778888875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.74  E-value=2.6e-17  Score=141.20  Aligned_cols=150  Identities=23%  Similarity=0.339  Sum_probs=110.5

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+.++..                                   
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~-----------------------------------   88 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIAD-----------------------------------   88 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHH-----------------------------------
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence            49999999999999999987 666999999999999999998765                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                                   .++..++.+...|+.+ ++.+.++||+|+|..+++|+      ++...++.++.++|+|||.+++..
T Consensus        89 -------------~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A           89 -------------ANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGSVFFW------EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             -------------TTCTTTEEEEECBTTB-CSSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------ccccCceEEEEcCHHH-CCCCcccccEEEECchHhhc------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence                         3344568999999876 45667899999999999765      467889999999999999999976


Q ss_pred             CCCchhhhhhhhhhhhhcc---c-----cccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          224 QPWVSYEKNRRVSETTATN---F-----QNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~---~-----~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ......... .........   +     .+.. +.++++.+ +++++||+.+++...
T Consensus       149 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~v~~~~~  203 (219)
T 3dlc_A          149 GFGNKELRD-SISAEMIRKNPDWKEFNRKNISQENVERFQN-VLDEIGISSYEIILG  203 (219)
T ss_dssp             CCSSHHHHH-HHHHHHHHHCTTHHHHHHHHSSHHHHHHHHH-HHHHHTCSSEEEEEE
T ss_pred             ccCcHHHHH-HHHHHHHHhHHHHHhhhhhccccCCHHHHHH-HHHHcCCCeEEEEec
Confidence            433221111 111111100   0     1122 23355544 899999999888754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=2e-17  Score=148.22  Aligned_cols=153  Identities=18%  Similarity=0.161  Sum_probs=114.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+.++..                               
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~-------------------------------   91 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQ-------------------------------   91 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            467899999999999999999987 666999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+ .+.+.++||+|+|..+++++       +...++.++.++|+|||++
T Consensus        92 -----------------~~~~~~v~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~-------~~~~~l~~~~~~LkpgG~l  146 (267)
T 3kkz_A           92 -----------------SGLQNRVTGIVGSMDD-LPFRNEELDLIWSEGAIYNI-------GFERGLNEWRKYLKKGGYL  146 (267)
T ss_dssp             -----------------TTCTTTEEEEECCTTS-CCCCTTCEEEEEESSCGGGT-------CHHHHHHHHGGGEEEEEEE
T ss_pred             -----------------cCCCcCcEEEEcChhh-CCCCCCCEEEEEEcCCceec-------CHHHHHHHHHHHcCCCCEE
Confidence                             3445569999999966 56667899999999999654       3578999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....|............+...+.. .....++.+ +++++||++++....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~aGf~~v~~~~~  196 (267)
T 3kkz_A          147 AVSECSWFTDERPAEINDFWMDAYPE-IDTIPNQVA-KIHKAGYLPVATFIL  196 (267)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHCTT-CEEHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEEEeeecCCCChHHHHHHHHHhCCC-CCCHHHHHH-HHHHCCCEEEEEEEC
Confidence            99765443222222222222222222 123344544 899999999887654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.74  E-value=4.5e-17  Score=142.82  Aligned_cols=158  Identities=16%  Similarity=0.289  Sum_probs=114.7

Q ss_pred             hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      ..++.+...+.++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.++.+.                        
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------------------------   95 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG------------------------   95 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT------------------------
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc------------------------
Confidence            345566666778999999999999999999887  458999999999999887631                        


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                                  ...++.+...|+.+ .+.+.++||+|+|..+++|+      ++...++.++.
T Consensus        96 ----------------------------~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~  140 (242)
T 3l8d_A           96 ----------------------------EGPDLSFIKGDLSS-LPFENEQFEAIMAINSLEWT------EEPLRALNEIK  140 (242)
T ss_dssp             ----------------------------CBTTEEEEECBTTB-CSSCTTCEEEEEEESCTTSS------SCHHHHHHHHH
T ss_pred             ----------------------------ccCCceEEEcchhc-CCCCCCCccEEEEcChHhhc------cCHHHHHHHHH
Confidence                                        12358899999876 45667899999999999765      46679999999


Q ss_pred             hhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          211 KLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++|+|||++++..........................+.+.++.+ +++++||++++...
T Consensus       141 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~  199 (242)
T 3l8d_A          141 RVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQ-LVKEQGFKVVDGIG  199 (242)
T ss_dssp             HHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHH-HHHHTTEEEEEEEE
T ss_pred             HHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHH-HHHHcCCEEEEeec
Confidence            999999999997532222111112222222222222345556655 89999999988653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.74  E-value=1.3e-17  Score=147.64  Aligned_cols=151  Identities=20%  Similarity=0.259  Sum_probs=110.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|+.++..                                
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~--------------------------------   81 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEE--------------------------------   81 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh--------------------------------
Confidence            578899999999999999999876 45899999999999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+.+.|+.+. +. +++||+|+|..+++++      .+...++.++.++|+|||.++
T Consensus        82 ----------------~~~~~~v~~~~~d~~~~-~~-~~~fD~V~~~~~~~~~------~~~~~~l~~~~r~LkpgG~l~  137 (256)
T 1nkv_A           82 ----------------LGVSERVHFIHNDAAGY-VA-NEKCDVAACVGATWIA------GGFAGAEELLAQSLKPGGIML  137 (256)
T ss_dssp             ----------------TTCTTTEEEEESCCTTC-CC-SSCEEEEEEESCGGGT------SSSHHHHHHHTTSEEEEEEEE
T ss_pred             ----------------cCCCcceEEEECChHhC-Cc-CCCCCEEEECCChHhc------CCHHHHHHHHHHHcCCCeEEE
Confidence                            34445689999998763 44 6889999999998655      356889999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +..+.|............+.. ..+.. +...++.+ +++++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~aGf~~~~~~~  186 (256)
T 1nkv_A          138 IGEPYWRQLPATEEIAQACGV-SSTSDFLTLPGLVG-AFDDLGYDVVEMVL  186 (256)
T ss_dssp             EEEEEETTCCSSHHHHHTTTC-SCGGGSCCHHHHHH-HHHTTTBCCCEEEE
T ss_pred             EecCcccCCCChHHHHHHHhc-ccccccCCHHHHHH-HHHHCCCeeEEEEe
Confidence            976544322111111111111 11112 33445544 89999999887643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.73  E-value=5.7e-17  Score=142.02  Aligned_cols=133  Identities=20%  Similarity=0.307  Sum_probs=99.3

Q ss_pred             ccccccccccccCCCCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHh
Q 047406           33 GNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRT  112 (290)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~  112 (290)
                      ..+..+|+... .........+.+...+.++.+|||+|||+|.++..+++.   .+++|+|+|+.+++.|+.++..    
T Consensus         5 ~~~a~~yd~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~----   76 (243)
T 3d2l_A            5 EQFAYVYDELM-QDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME----   76 (243)
T ss_dssp             -CTTHHHHHHT-TTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhh-hcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh----
Confidence            34455555333 222233445566667778899999999999999998876   5899999999999999987654    


Q ss_pred             hhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhh
Q 047406          113 EHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTK  191 (290)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~  191 (290)
                                                                  .+  .++.+...|+.+ .+.+ ++||+|+|.. +++
T Consensus        77 --------------------------------------------~~--~~~~~~~~d~~~-~~~~-~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           77 --------------------------------------------TN--RHVDFWVQDMRE-LELP-EPVDAITILCDSLN  108 (243)
T ss_dssp             --------------------------------------------TT--CCCEEEECCGGG-CCCS-SCEEEEEECTTGGG
T ss_pred             --------------------------------------------cC--CceEEEEcChhh-cCCC-CCcCEEEEeCCchh
Confidence                                                        11  247888888876 3433 7899999986 776


Q ss_pred             hhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          192 WIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       192 ~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      |+.   ..++...++.++.++|+|||.+++..+
T Consensus       109 ~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A          109 YLQ---TEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             GCC---SHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcC---CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            552   346778999999999999999999543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.72  E-value=1.1e-16  Score=138.93  Aligned_cols=171  Identities=15%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+.++..                                
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------   75 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR--------------------------------   75 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT--------------------------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999999999877667999999999999999987543                                


Q ss_pred             HHHHHHhhhcCCCccccCcC----cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLF----DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                      .++.    .++.+.+.|+.. .+.+.++||+|+|..+++|+    .++....+++++.++|+||
T Consensus        76 ----------------~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~----~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A           76 ----------------LRLPRNQWERLQLIQGALTY-QDKRFHGYDAATVIEVIEHL----DLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             ----------------CCCCHHHHTTEEEEECCTTS-CCGGGCSCSEEEEESCGGGC----CHHHHHHHHHHHHTTTCCS
T ss_pred             ----------------hcCCcccCcceEEEeCCccc-ccccCCCcCEEeeHHHHHcC----CHHHHHHHHHHHHHHcCCC
Confidence                            1222    258899999744 34445789999999999766    2456789999999999999


Q ss_pred             cEEEEeeCCCchhhhhh-hhhhhhhccc-cccccCchhHHH---HHHHHcCCeeeEeccCCCCCCCCCCCCcceeee
Q 047406          217 GIFVLEPQPWVSYEKNR-RVSETTATNF-QNIKLYPKEFQE---ILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLF  288 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~---~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~  288 (290)
                      |++++.+..  .+...- .+........ ....+.++++.+   .+++++||++ ...+.|.. ....|+...|..|
T Consensus       135 G~li~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v-~~~~~g~~-~~~~g~~~q~~~~  207 (217)
T 3jwh_A          135 IVIVTTPNI--EYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV-QFQPIGEA-DPEVGSPTQMAVF  207 (217)
T ss_dssp             EEEEEEEBH--HHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE-EECCCSCC-CSSSCCSEEEEEE
T ss_pred             EEEEEccCc--ccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE-EEEecCCc-cCCCCchheeEee
Confidence            988876431  010000 0000011111 122356666652   4889999986 44544333 2234555555444

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.72  E-value=7.7e-17  Score=146.38  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..+++.++ .+|+|+|+|+.+++.|+..+..                                
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~--------------------------------  127 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQ--------------------------------  127 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHh--------------------------------
Confidence            6789999999999999999998764 4899999999999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+ ++.++++||+|+|..+++|+      .+...++.++.++|+|||+++
T Consensus       128 ----------------~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~  184 (297)
T 2o57_A          128 ----------------AGLADNITVKYGSFLE-IPCEDNSYDFIWSQDAFLHS------PDKLKVFQECARVLKPRGVMA  184 (297)
T ss_dssp             ----------------HTCTTTEEEEECCTTS-CSSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCCCcceEEEEcCccc-CCCCCCCEeEEEecchhhhc------CCHHHHHHHHHHHcCCCeEEE
Confidence                            3344568999999876 56667899999999999765      247899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +............................+.++.+ +++++||++++...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~  233 (297)
T 2o57_A          185 ITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRS-LAKECGLVTLRTFS  233 (297)
T ss_dssp             EEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHH-HHHHTTEEEEEEEE
T ss_pred             EEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHH-HHHHCCCeEEEEEE
Confidence            97543221111111111111111111224455555 89999999887754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.72  E-value=9.1e-17  Score=140.61  Aligned_cols=154  Identities=18%  Similarity=0.235  Sum_probs=108.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|+.++..                               
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------   90 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-------------------------------   90 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-------------------------------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-------------------------------
Confidence            3577999999999999999999998778999999999999999885422                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .   .++.+.+.|+.+ .+.+ ++||+|+|..+++|+.    ++....++.++.++|+|||.+
T Consensus        91 -----------------~---~~~~~~~~d~~~-~~~~-~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l  144 (234)
T 3dtn_A           91 -----------------N---LKVKYIEADYSK-YDFE-EKYDMVVSALSIHHLE----DEDKKELYKRSYSILKESGIF  144 (234)
T ss_dssp             -----------------C---TTEEEEESCTTT-CCCC-SCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------C---CCEEEEeCchhc-cCCC-CCceEEEEeCccccCC----HHHHHHHHHHHHHhcCCCcEE
Confidence                             1   158899999876 3444 8999999999997662    345568999999999999999


Q ss_pred             EEeeCCCchhhhhhh-----hhhh----------h---hccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRR-----VSET----------T---ATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~-----~~~~----------~---~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++.............     ....          .   .....+.. +..+++.+ +++++||+.++++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~aGF~~v~~~~~  214 (234)
T 3dtn_A          145 INADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLN-WLKEAGFRDVSCIYK  214 (234)
T ss_dssp             EEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             EEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHH-HHHHcCCCceeeeee
Confidence            996533211110000     0000          0   00111222 34445544 899999999988654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.71  E-value=2.5e-16  Score=140.37  Aligned_cols=150  Identities=12%  Similarity=0.226  Sum_probs=107.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+  +|+|+|+|+.+++.|+..+..                                
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~--------------------------------   81 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEG--------------------------------   81 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHh--------------------------------
Confidence            4788999999999999999988753  999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|+.+ ++.++++||+|+|..+++|+      .+...++.++.++|+|||.++
T Consensus        82 ----------------~~~-~~v~~~~~d~~~-l~~~~~~fD~V~~~~~l~~~------~d~~~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A           82 ----------------NGH-QQVEYVQGDAEQ-MPFTDERFHIVTCRIAAHHF------PNPASFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             ----------------TTC-CSEEEEECCC-C-CCSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCC-CceEEEEecHHh-CCCCCCCEEEEEEhhhhHhc------CCHHHHHHHHHHHcCCCCEEE
Confidence                            222 258899999866 56677899999999999876      356799999999999999999


Q ss_pred             EeeCCCchhhhhh---hhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNR---RVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +............   ....... ...+.. +...++.+ +++++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~  189 (260)
T 1vl5_A          138 LVDNSAPENDAFDVFYNYVEKER-DYSHHRAWKKSDWLK-MLEEAGFELEELHC  189 (260)
T ss_dssp             EEEEEBCSSHHHHHHHHHHHHHH-CTTCCCCCBHHHHHH-HHHHHTCEEEEEEE
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhc-CccccCCCCHHHHHH-HHHHCCCeEEEEEE
Confidence            9532111100000   0001111 111222 34455555 89999999876643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.71  E-value=1.2e-16  Score=141.72  Aligned_cols=102  Identities=21%  Similarity=0.379  Sum_probs=86.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|+....                                  
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~----------------------------------   88 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT----------------------------------   88 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC----------------------------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc----------------------------------
Confidence            688999999999999999988743 389999999999999887421                                  


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                        ..++.+...|+.+ .+.+.++||+|+|..+++|+      ++...+++++.++|+|||.+++
T Consensus        89 ------------------~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A           89 ------------------SPVVCYEQKAIED-IAIEPDAYNVVLSSLALHYI------ASFDDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             ------------------CTTEEEEECCGGG-CCCCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------------------cCCeEEEEcchhh-CCCCCCCeEEEEEchhhhhh------hhHHHHHHHHHHHcCCCcEEEE
Confidence                              2358899999876 46667899999999999766      4678999999999999999999


Q ss_pred             ee
Q 047406          222 EP  223 (290)
Q Consensus       222 ~~  223 (290)
                      ..
T Consensus       144 ~~  145 (253)
T 3g5l_A          144 SV  145 (253)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.71  E-value=2.3e-16  Score=141.58  Aligned_cols=153  Identities=21%  Similarity=0.271  Sum_probs=111.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++..+++|+|+|+.+++.|+.++..                                
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------------------   83 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK--------------------------------   83 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            578999999999999999999988778999999999999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|+.+ .+.+.++||+|+|..+++|+      .+...++.++.++|+|||+++
T Consensus        84 ----------------~~~-~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~  139 (276)
T 3mgg_A           84 ----------------NGI-KNVKFLQANIFS-LPFEDSSFDHIFVCFVLEHL------QSPEEALKSLKKVLKPGGTIT  139 (276)
T ss_dssp             ----------------TTC-CSEEEEECCGGG-CCSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCC-CCcEEEEccccc-CCCCCCCeeEEEEechhhhc------CCHHHHHHHHHHHcCCCcEEE
Confidence                            222 258899999876 46667899999999999766      346799999999999999999


Q ss_pred             EeeCCCchhhh---hhhhhhhhh------ccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEK---NRRVSETTA------TNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +..+.+.+...   .........      .......+...++.. +++++||+++++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~aGf~~v~~~~  197 (276)
T 3mgg_A          140 VIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYP-LLQESGFEKIRVEP  197 (276)
T ss_dssp             EEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHH-HHHHTTCEEEEEEE
T ss_pred             EEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHH-HHHHCCCCeEEEee
Confidence            97643322100   000000000      011111233455555 89999999887753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.71  E-value=1.9e-16  Score=136.95  Aligned_cols=145  Identities=15%  Similarity=0.137  Sum_probs=109.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+.++..                               
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------   84 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-------------------------------   84 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            577899999999999999999987 456999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++. ++.+...|+.+ .+.+.++||+|+|..+++++      ++...++.++.++|+|||.+
T Consensus        85 -----------------~~~~-~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l  139 (219)
T 3dh0_A           85 -----------------LGLK-NVEVLKSEENK-IPLPDNTVDFIFMAFTFHEL------SEPLKFLEELKRVAKPFAYL  139 (219)
T ss_dssp             -----------------HTCT-TEEEEECBTTB-CSSCSSCEEEEEEESCGGGC------SSHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCC-cEEEEeccccc-CCCCCCCeeEEEeehhhhhc------CCHHHHHHHHHHHhCCCeEE
Confidence                             2222 58899999866 45567889999999999765      35689999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..........         .......+..+++.. +++++||++++....
T Consensus       140 ~i~~~~~~~~~~---------~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  181 (219)
T 3dh0_A          140 AIIDWKKEERDK---------GPPPEEVYSEWEVGL-ILEDAGIRVGRVVEV  181 (219)
T ss_dssp             EEEEECSSCCSS---------SCCGGGSCCHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             EEEEeccccccc---------CCchhcccCHHHHHH-HHHHCCCEEEEEEee
Confidence            996422111100         000111234455555 899999999887654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.70  E-value=1.5e-16  Score=142.27  Aligned_cols=154  Identities=16%  Similarity=0.216  Sum_probs=111.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++..+..                                
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--------------------------------  106 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATA--------------------------------  106 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHh--------------------------------
Confidence            478899999999999999998876 46999999999999999987664                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+ ++.++++||+|+|..+++|+      .+...++.++.++|+|||.++
T Consensus       107 ----------------~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~  163 (273)
T 3bus_A          107 ----------------AGLANRVTFSYADAMD-LPFEDASFDAVWALESLHHM------PDRGRALREMARVLRPGGTVA  163 (273)
T ss_dssp             ----------------TTCTTTEEEEECCTTS-CCSCTTCEEEEEEESCTTTS------SCHHHHHHHHHTTEEEEEEEE
T ss_pred             ----------------cCCCcceEEEECcccc-CCCCCCCccEEEEechhhhC------CCHHHHHHHHHHHcCCCeEEE
Confidence                            3344568999999876 56667899999999999766      346899999999999999999


Q ss_pred             EeeCCCchh--hhhhhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSY--EKNRRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +....+...  .............+.+.. +..+++.+ +++++||++++....
T Consensus       164 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          164 IADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYES-DVRQAELVVTSTVDI  216 (273)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHHHTTCEEEEEEEC
T ss_pred             EEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHH-HHHHcCCeEEEEEEC
Confidence            965322110  000011111111222223 34455554 899999999876554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.70  E-value=1.3e-16  Score=146.91  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=112.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+.++..                               
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~-------------------------------  162 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARE-------------------------------  162 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            3578899999999999999999876 45899999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+ .+.+.+.||+|+|..+++|+       +...++.++.++|+|||++
T Consensus       163 -----------------~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~-------~~~~~l~~~~~~LkpgG~l  217 (312)
T 3vc1_A          163 -----------------LRIDDHVRSRVCNMLD-TPFDKGAVTASWNNESTMYV-------DLHDLFSEHSRFLKVGGRY  217 (312)
T ss_dssp             -----------------TTCTTTEEEEECCTTS-CCCCTTCEEEEEEESCGGGS-------CHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCceEEEECChhc-CCCCCCCEeEEEECCchhhC-------CHHHHHHHHHHHcCCCcEE
Confidence                             4455579999999976 46667899999999999755       1789999999999999999


Q ss_pred             EEeeCCCchhh-hhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYE-KNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++......... ........+...+..-....+++.+ +++++||++++...-
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          218 VTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLR-AMADNRLVPHTIVDL  269 (312)
T ss_dssp             EEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHH-HHHTTTEEEEEEEEC
T ss_pred             EEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHH-HHHHCCCEEEEEEeC
Confidence            99653222211 1111111111111111234455555 899999998877543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.70  E-value=1.4e-16  Score=139.11  Aligned_cols=146  Identities=18%  Similarity=0.263  Sum_probs=106.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+  +|+|+|+|+.+++.|+....                                 
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~---------------------------------   85 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK---------------------------------   85 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC---------------------------------
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh---------------------------------
Confidence            5788999999999999999988743  89999999999999987421                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH-hhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW-KLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~-~~LkpgG~l  219 (290)
                                       .   ++.+.+.|+.+.  .++++||+|+|..+++|+      ++...++.++. ++|+|||.+
T Consensus        86 -----------------~---~v~~~~~d~~~~--~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~~LkpgG~l  137 (250)
T 2p7i_A           86 -----------------D---GITYIHSRFEDA--QLPRRYDNIVLTHVLEHI------DDPVALLKRINDDWLAEGGRL  137 (250)
T ss_dssp             -----------------S---CEEEEESCGGGC--CCSSCEEEEEEESCGGGC------SSHHHHHHHHHHTTEEEEEEE
T ss_pred             -----------------C---CeEEEEccHHHc--CcCCcccEEEEhhHHHhh------cCHHHHHHHHHHHhcCCCCEE
Confidence                             1   588889998763  356889999999999766      35689999999 999999999


Q ss_pred             EEeeCCCchhhhhhhh-hhhh---------hccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRV-SETT---------ATNFQNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~-~~~~---------~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++..++.......... ....         .....+.. +.++++.+ +++++||++++...
T Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~  198 (250)
T 2p7i_A          138 FLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLER-DASRAGLQVTYRSG  198 (250)
T ss_dssp             EEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHH-HHHHTTCEEEEEEE
T ss_pred             EEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHH-HHHHCCCeEEEEee
Confidence            9977654332211100 0000         00112223 44455555 89999999988753

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=3.1e-16  Score=131.88  Aligned_cols=155  Identities=19%  Similarity=0.259  Sum_probs=115.2

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .+...+.++.+|||+|||+|.++..++..  ..+++++|+|+.+++.++.++.                           
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~---------------------------   89 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP---------------------------   89 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT---------------------------
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC---------------------------
Confidence            34444568899999999999999998886  4589999999999999887421                           


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                                 ++.+...|+.+ .+.+.++||+|+|. .+++++    ..+....++.++.++|
T Consensus        90 ---------------------------~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~----~~~~~~~~l~~~~~~l  137 (195)
T 3cgg_A           90 ---------------------------EARWVVGDLSV-DQISETDFDLIVSAGNVMGFL----AEDGREPALANIHRAL  137 (195)
T ss_dssp             ---------------------------TSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS----CHHHHHHHHHHHHHHE
T ss_pred             ---------------------------CCcEEEccccc-CCCCCCceeEEEECCcHHhhc----ChHHHHHHHHHHHHHh
Confidence                                       36788888866 34556789999998 677544    2456789999999999


Q ss_pred             CCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406          214 RPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK  290 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k  290 (290)
                      +|||.+++..+...                   .+...++.. +++++||++++.................+.++||
T Consensus       138 ~~~G~l~~~~~~~~-------------------~~~~~~~~~-~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k  194 (195)
T 3cgg_A          138 GADGRAVIGFGAGR-------------------GWVFGDFLE-VAERVGLELENAFESWDLKPFVQGSEFLVAVFTK  194 (195)
T ss_dssp             EEEEEEEEEEETTS-------------------SCCHHHHHH-HHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCC-------------------CcCHHHHHH-HHHHcCCEEeeeecccccCcCCCCCcEEEEEEec
Confidence            99999999654211                   134455555 7899999999887764443334445556666664

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=3.1e-16  Score=135.90  Aligned_cols=116  Identities=18%  Similarity=0.281  Sum_probs=93.0

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      +.+.+.+.++.+|||+|||+|.++..++...+  +++|+|+|+.+++.|+.+...                         
T Consensus        30 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-------------------------   82 (227)
T 1ve3_A           30 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKS-------------------------   82 (227)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-------------------------
T ss_pred             HHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh-------------------------
Confidence            34445556789999999999999999888754  899999999999999987654                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                             .+  .++.+...|+.+ .+.+.++||+|+|..++++.+    ..+...++.++.++|
T Consensus        83 -----------------------~~--~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~----~~~~~~~l~~~~~~L  132 (227)
T 1ve3_A           83 -----------------------RE--SNVEFIVGDARK-LSFEDKTFDYVIFIDSIVHFE----PLELNQVFKEVRRVL  132 (227)
T ss_dssp             -----------------------TT--CCCEEEECCTTS-CCSCTTCEEEEEEESCGGGCC----HHHHHHHHHHHHHHE
T ss_pred             -----------------------cC--CCceEEECchhc-CCCCCCcEEEEEEcCchHhCC----HHHHHHHHHHHHHHc
Confidence                                   11  358889999876 455567999999998854333    257789999999999


Q ss_pred             CCCcEEEEeeCCC
Q 047406          214 RPGGIFVLEPQPW  226 (290)
Q Consensus       214 kpgG~l~i~~~~~  226 (290)
                      +|||.+++...++
T Consensus       133 ~~gG~l~~~~~~~  145 (227)
T 1ve3_A          133 KPSGKFIMYFTDL  145 (227)
T ss_dssp             EEEEEEEEEEECH
T ss_pred             CCCcEEEEEecCh
Confidence            9999999976654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.70  E-value=1.8e-16  Score=145.34  Aligned_cols=115  Identities=18%  Similarity=0.303  Sum_probs=92.8

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHH-hHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIA-QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la-~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      +...+.++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.|+.++..                          
T Consensus       112 l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------  165 (305)
T 3ocj_A          112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG--------------------------  165 (305)
T ss_dssp             HHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT--------------------------
T ss_pred             HHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh--------------------------
Confidence            33445788999999999999999886 456677999999999999999987653                          


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                            .++..++.+.+.|+.+ .+.+ ++||+|+|..+++|++   +......++.++.++|+
T Consensus       166 ----------------------~~~~~~v~~~~~d~~~-~~~~-~~fD~v~~~~~~~~~~---~~~~~~~~l~~~~~~Lk  218 (305)
T 3ocj_A          166 ----------------------HALAGQITLHRQDAWK-LDTR-EGYDLLTSNGLNIYEP---DDARVTELYRRFWQALK  218 (305)
T ss_dssp             ----------------------STTGGGEEEEECCGGG-CCCC-SCEEEEECCSSGGGCC---CHHHHHHHHHHHHHHEE
T ss_pred             ----------------------cCCCCceEEEECchhc-CCcc-CCeEEEEECChhhhcC---CHHHHHHHHHHHHHhcC
Confidence                                  3344569999999987 4555 8999999999986553   23444578999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      |||++++..
T Consensus       219 pgG~l~i~~  227 (305)
T 3ocj_A          219 PGGALVTSF  227 (305)
T ss_dssp             EEEEEEEEC
T ss_pred             CCeEEEEEe
Confidence            999999965

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.70  E-value=1.1e-16  Score=141.78  Aligned_cols=151  Identities=22%  Similarity=0.295  Sum_probs=109.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+.....                                
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--------------------------------  100 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG--------------------------------  100 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS--------------------------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc--------------------------------
Confidence            577899999999999999999976 45999999999999999875321                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                        . .++.+...|+.+ .+.+.++||+|+|..+++|+    +.++...++.++.++|+|||.++
T Consensus       101 ------------------~-~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~----~~~~~~~~l~~~~~~L~pgG~l~  156 (266)
T 3ujc_A          101 ------------------N-NKIIFEANDILT-KEFPENNFDLIYSRDAILAL----SLENKNKLFQKCYKWLKPTGTLL  156 (266)
T ss_dssp             ------------------C-TTEEEEECCTTT-CCCCTTCEEEEEEESCGGGS----CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ------------------C-CCeEEEECcccc-CCCCCCcEEEEeHHHHHHhc----ChHHHHHHHHHHHHHcCCCCEEE
Confidence                              1 468899999876 46667899999999999766    24678999999999999999999


Q ss_pred             EeeCCCchhhhh-hhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKN-RRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +........... .........  .+.. +..+++.+ +++++||++++....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          157 ITDYCATEKENWDDEFKEYVKQ--RKYTLITVEEYAD-ILTACNFKNVVSKDL  206 (266)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHH--HTCCCCCHHHHHH-HHHHTTCEEEEEEEC
T ss_pred             EEEeccCCcccchHHHHHHHhc--CCCCCCCHHHHHH-HHHHcCCeEEEEEeC
Confidence            965322110000 001111110  1122 34455555 899999998876543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.70  E-value=2.9e-16  Score=137.27  Aligned_cols=107  Identities=21%  Similarity=0.431  Sum_probs=87.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+.++..                                
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~--------------------------------   81 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRS--------------------------------   81 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhh--------------------------------
Confidence            47789999999999999999887  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++  ++.+.+.|+.+ .+.+ ++||+|+|.. +++|+.   +.++...++.++.++|+|||.+
T Consensus        82 ----------------~~~--~~~~~~~d~~~-~~~~-~~fD~v~~~~~~l~~~~---~~~~~~~~l~~~~~~L~pgG~l  138 (246)
T 1y8c_A           82 ----------------QGL--KPRLACQDISN-LNIN-RKFDLITCCLDSTNYII---DSDDLKKYFKAVSNHLKEGGVF  138 (246)
T ss_dssp             ----------------TTC--CCEEECCCGGG-CCCS-CCEEEEEECTTGGGGCC---SHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ----------------cCC--CeEEEeccccc-CCcc-CCceEEEEcCccccccC---CHHHHHHHHHHHHHhcCCCcEE
Confidence                            122  47888888876 3444 7899999998 987652   2357889999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       139 ~~~~~  143 (246)
T 1y8c_A          139 IFDIN  143 (246)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.70  E-value=1.6e-16  Score=143.65  Aligned_cols=154  Identities=19%  Similarity=0.270  Sum_probs=110.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++..  ..+|+|+|+|+.+++.|+.++..                                
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~--------------------------------  112 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEA--------------------------------  112 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--------------------------------
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            45679999999999999999887  45999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+..+.+.++||+|+|..+++|+      ++...++.++.++|+|||+++
T Consensus       113 ----------------~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~  170 (285)
T 4htf_A          113 ----------------KGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWV------ADPRSVLQTLWSVLRPGGVLS  170 (285)
T ss_dssp             -----------------CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGC------SCHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------cCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcc------cCHHHHHHHHHHHcCCCeEEE
Confidence                            3344568999999877432456899999999999766      356889999999999999999


Q ss_pred             EeeCCCchhhhhhhh----hhhhh-------cccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRV----SETTA-------TNFQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~----~~~~~-------~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..............    .....       ...... .+.++++.+ +++++||++++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~aGf~v~~~~~~  232 (285)
T 4htf_A          171 LMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL-WLEEAGWQIMGKTGV  232 (285)
T ss_dssp             EEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             EEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHH-HHHHCCCceeeeeeE
Confidence            975432211100000    00000       011122 244455555 899999999977654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=7.8e-16  Score=140.61  Aligned_cols=157  Identities=15%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++..                                
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~--------------------------------  117 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDE--------------------------------  117 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            5788999999999999999999876 6899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC---CchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW---GDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~---~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      .++..++.+...|+.+.    .++||+|+|..+++++.-..   +.+....++.++.++|+|||
T Consensus       118 ----------------~~~~~~v~~~~~d~~~~----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG  177 (302)
T 3hem_A          118 ----------------VDSPRRKEVRIQGWEEF----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG  177 (302)
T ss_dssp             ----------------SCCSSCEEEEECCGGGC----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTC
T ss_pred             ----------------cCCCCceEEEECCHHHc----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCc
Confidence                            44555799999998762    58899999999997663111   23567899999999999999


Q ss_pred             EEEEeeCCCchhhhhh--hh---------hhhhhc-cccccccC-chhHHHHHHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNR--RV---------SETTAT-NFQNIKLY-PKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~--~~---------~~~~~~-~~~~~~~~-~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++++............  ..         ..++.. .++...+. .+++.+ +++++||++++....
T Consensus       178 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~-~l~~aGf~~~~~~~~  243 (302)
T 3hem_A          178 RMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDY-YSSNAGWKVERYHRI  243 (302)
T ss_dssp             EEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHH-HHHHHTCEEEEEEEC
T ss_pred             EEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHH-HHHhCCcEEEEEEeC
Confidence            9999654222111100  00         012221 22222233 344544 899999999887554

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.69  E-value=3.3e-16  Score=138.16  Aligned_cols=147  Identities=17%  Similarity=0.240  Sum_probs=106.7

Q ss_pred             hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           57 KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        57 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      .+.+.++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.++.+                               
T Consensus        36 l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------------------------------   82 (240)
T 3dli_A           36 IPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-------------------------------   82 (240)
T ss_dssp             GGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-------------------------------
T ss_pred             HhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-------------------------------
Confidence            344467899999999999999998887  44899999999999888652                               


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                                +.+...|..+.. +.++++||+|+|..+++|+.    +++...++.++.++|+|
T Consensus        83 --------------------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~----~~~~~~~l~~~~~~Lkp  132 (240)
T 3dli_A           83 --------------------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD----PERLFELLSLCYSKMKY  132 (240)
T ss_dssp             --------------------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC----GGGHHHHHHHHHHHBCT
T ss_pred             --------------------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCC----cHHHHHHHHHHHHHcCC
Confidence                                      556666665522 45668999999999997663    45789999999999999


Q ss_pred             CcEEEEeeCCCchhhhhhhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          216 GGIFVLEPQPWVSYEKNRRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       216 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ||++++..+..........   .. ....+.. +.++++. .+++++||++++....
T Consensus       133 gG~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~-~~l~~aGf~~~~~~~~  184 (240)
T 3dli_A          133 SSYIVIESPNPTSLYSLIN---FY-IDPTHKKPVHPETLK-FILEYLGFRDVKIEFF  184 (240)
T ss_dssp             TCCEEEEEECTTSHHHHHH---HT-TSTTCCSCCCHHHHH-HHHHHHTCEEEEEEEE
T ss_pred             CcEEEEEeCCcchhHHHHH---Hh-cCccccccCCHHHHH-HHHHHCCCeEEEEEEe
Confidence            9999997654333222111   11 1112333 3444554 4899999998877654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.69  E-value=1.1e-16  Score=137.22  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=105.8

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+|||+|||+|.++..++..  ..+++|+|+|+.+++.|+.+.                                   
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----------------------------------   83 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-----------------------------------   83 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-----------------------------------
T ss_pred             CCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----------------------------------
Confidence            3899999999999999999886  458999999999999988741                                   


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                         .++.+...|+.+ .+.+.++||+|+|..+++|+.    .++...++.++.++|+|||.+++
T Consensus        84 -------------------~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~L~pgG~l~i  139 (203)
T 3h2b_A           84 -------------------PSVTFHHGTITD-LSDSPKRWAGLLAWYSLIHMG----PGELPDALVALRMAVEDGGGLLM  139 (203)
T ss_dssp             -------------------TTSEEECCCGGG-GGGSCCCEEEEEEESSSTTCC----TTTHHHHHHHHHHTEEEEEEEEE
T ss_pred             -------------------CCCeEEeCcccc-cccCCCCeEEEEehhhHhcCC----HHHHHHHHHHHHHHcCCCcEEEE
Confidence                               147788888876 455678999999999997652    45789999999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhcccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ........      . .......+. .+.++++.+ +++++||++++....
T Consensus       140 ~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  182 (203)
T 3h2b_A          140 SFFSGPSL------E-PMYHPVATAYRWPLPELAQ-ALETAGFQVTSSHWD  182 (203)
T ss_dssp             EEECCSSC------E-EECCSSSCEEECCHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEccCCch------h-hhhchhhhhccCCHHHHHH-HHHHCCCcEEEEEec
Confidence            75422210      0 001111122 244455555 899999999988765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.68  E-value=8.3e-16  Score=142.60  Aligned_cols=154  Identities=14%  Similarity=0.095  Sum_probs=114.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..+++.+|..+++++|+ +.+++.|++++..                                
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  214 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLD--------------------------------  214 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhh--------------------------------
Confidence            3468999999999999999999998889999999 9999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.|...|+.+  +.|. +||+|+|.+++|+    |+++....+++++.++|+|||.++
T Consensus       215 ----------------~~~~~~v~~~~~d~~~--~~p~-~~D~v~~~~vlh~----~~~~~~~~~l~~~~~~L~pgG~l~  271 (332)
T 3i53_A          215 ----------------TGLSGRAQVVVGSFFD--PLPA-GAGGYVLSAVLHD----WDDLSAVAILRRCAEAAGSGGVVL  271 (332)
T ss_dssp             ----------------TTCTTTEEEEECCTTS--CCCC-SCSEEEEESCGGG----SCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             ----------------cCcCcCeEEecCCCCC--CCCC-CCcEEEEehhhcc----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence                            3455679999999974  3333 8999999999964    456678999999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +....+......................+.+++.+ +++++||+++++...
T Consensus       272 i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          272 VIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGE-LAAQAGLAVRAAHPI  321 (332)
T ss_dssp             EEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHH-HHHHCCCEEEEEEEC
Confidence            96553322200000000111112222345666766 899999999998866

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.68  E-value=1.1e-16  Score=144.26  Aligned_cols=180  Identities=20%  Similarity=0.209  Sum_probs=113.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|++++..         ....++|.+.+.+.+..+.....
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~---------~~~~~d~s~~~~~~~~~~~~~~~  123 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKK---------EPGAYDWTPAVKFACELEGNSGR  123 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHT---------CTTCCCCHHHHHHHHHHTTCGGG
T ss_pred             CCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhc---------CCCcccchHHHHHHHhcCCCCcc
Confidence            46789999999999887765554 334799999999999999987654         11234444444444332211000


Q ss_pred             HHHHHHhhhcCCCccccCcCccee-EeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVS-FKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                      +.+ ..          ..+...+. +.+.|+.+..+.   ..++||+|+|..+++|+..  ..+++..++.+++++||||
T Consensus       124 ~~~-~~----------~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~--~~~~~~~~l~~i~r~LKPG  190 (263)
T 2a14_A          124 WEE-KE----------EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC--SLDAYRAALCNLASLLKPG  190 (263)
T ss_dssp             HHH-HH----------HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEE
T ss_pred             hhh-HH----------HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC--CHHHHHHHHHHHHHHcCCC
Confidence            000 00          00111243 788888764332   2468999999999987632  2357789999999999999


Q ss_pred             cEEEEeeCCCc-hhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWV-SYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |+|++....-. .+.       .....+.+..+..+++.+ ++.++||++++....
T Consensus       191 G~li~~~~~~~~~~~-------~g~~~~~~~~~~~~~l~~-~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          191 GHLVTTVTLRLPSYM-------VGKREFSCVALEKGEVEQ-AVLDAGFDIEQLLHS  238 (263)
T ss_dssp             EEEEEEEESSCCEEE-------ETTEEEECCCCCHHHHHH-HHHHTTEEEEEEEEE
T ss_pred             cEEEEEEeecCccce-------eCCeEeeccccCHHHHHH-HHHHCCCEEEEEeec
Confidence            99999742100 000       000112233345566655 899999999887654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.68  E-value=3.5e-16  Score=138.11  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=107.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|+.++..                                 
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---------------------------------  124 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGE---------------------------------  124 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGG---------------------------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhh---------------------------------
Confidence            57899999999999999988865 45899999999999999886432                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .+ ..++.+...|+.+ .+.+.++||+|+|..+++++.    ++....++.++.++|+|||++++
T Consensus       125 ---------------~~-~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          125 ---------------EG-KRVRNYFCCGLQD-FTPEPDSYDVIWIQWVIGHLT----DQHLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             ---------------GG-GGEEEEEECCGGG-CCCCSSCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cC-CceEEEEEcChhh-cCCCCCCEEEEEEcchhhhCC----HHHHHHHHHHHHHhcCCCeEEEE
Confidence                           11 1247888888766 455567899999999997652    34567999999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .......    ..   .............+++.+ +++++||++++....
T Consensus       184 ~~~~~~~----~~---~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          184 KDNMAQE----GV---ILDDVDSSVCRDLDVVRR-IICSAGLSLLAEERQ  225 (241)
T ss_dssp             EEEEBSS----SE---EEETTTTEEEEBHHHHHH-HHHHTTCCEEEEEEC
T ss_pred             EEccCCC----cc---eecccCCcccCCHHHHHH-HHHHcCCeEEEeeec
Confidence            6542211    00   000011111234555555 899999999988766

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.68  E-value=2.6e-16  Score=135.80  Aligned_cols=151  Identities=19%  Similarity=0.234  Sum_probs=111.0

Q ss_pred             chhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh
Q 047406           50 DPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE  129 (290)
Q Consensus        50 ~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (290)
                      .+.+..+...+.++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++.++                       
T Consensus        31 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----------------------   85 (211)
T 3e23_A           31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-----------------------   85 (211)
T ss_dssp             CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-----------------------
T ss_pred             hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-----------------------
Confidence            5566666677778999999999999999999886  459999999999999998753                       


Q ss_pred             ccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                                                      .+.+...|+.+ .+ +.++||+|+|..+++++.    .++...++.++
T Consensus        86 --------------------------------~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~  127 (211)
T 3e23_A           86 --------------------------------GRPVRTMLFHQ-LD-AIDAYDAVWAHACLLHVP----RDELADVLKLI  127 (211)
T ss_dssp             --------------------------------TSCCEECCGGG-CC-CCSCEEEEEECSCGGGSC----HHHHHHHHHHH
T ss_pred             --------------------------------CCceEEeeecc-CC-CCCcEEEEEecCchhhcC----HHHHHHHHHHH
Confidence                                            24566677665 34 568999999999997653    46788999999


Q ss_pred             HhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcC-CeeeEeccC
Q 047406          210 WKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG-FRTVEDIGS  271 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G-f~~v~~~~~  271 (290)
                      .++|+|||++++...+......     .....  ....+..+++.+ +++++| |++++....
T Consensus       128 ~~~LkpgG~l~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~-~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          128 WRALKPGGLFYASYKSGEGEGR-----DKLAR--YYNYPSEEWLRA-RYAEAGTWASVAVESS  182 (211)
T ss_dssp             HHHEEEEEEEEEEEECCSSCEE-----CTTSC--EECCCCHHHHHH-HHHHHCCCSEEEEEEE
T ss_pred             HHhcCCCcEEEEEEcCCCcccc-----cccch--hccCCCHHHHHH-HHHhCCCcEEEEEEec
Confidence            9999999999997543221100     00000  111234455555 899999 999887654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.67  E-value=3.9e-16  Score=135.50  Aligned_cols=167  Identities=22%  Similarity=0.265  Sum_probs=112.4

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      ..+...+.++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.++.++...+                       
T Consensus        22 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----------------------   76 (235)
T 3sm3_A           22 PIIHNYLQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPG-----------------------   76 (235)
T ss_dssp             TTHHHHCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCS-----------------------
T ss_pred             HHHHHhCCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-----------------------
Confidence            345555678899999999999999999887  4599999999999999988643200                       


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                      .                     ......++.+...|+.. .+.+.++||+|+|..+++++.   +......++.++.++|
T Consensus        77 ~---------------------~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~---~~~~~~~~l~~~~~~L  131 (235)
T 3sm3_A           77 L---------------------NQKTGGKAEFKVENASS-LSFHDSSFDFAVMQAFLTSVP---DPKERSRIIKEVFRVL  131 (235)
T ss_dssp             C---------------------CSSSSCEEEEEECCTTS-CCSCTTCEEEEEEESCGGGCC---CHHHHHHHHHHHHHHE
T ss_pred             C---------------------ccccCcceEEEEecccc-cCCCCCceeEEEEcchhhcCC---CHHHHHHHHHHHHHHc
Confidence            0                     00112358899999876 456678999999999997652   2244558999999999


Q ss_pred             CCCcEEEEeeCC--Cchhhhhhhh-hhhhh---------c-------cccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          214 RPGGIFVLEPQP--WVSYEKNRRV-SETTA---------T-------NFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       214 kpgG~l~i~~~~--~~~~~~~~~~-~~~~~---------~-------~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +|||.+++....  |......... .....         .       ......+..+++.+ +++++||+++++...
T Consensus       132 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          132 KPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVF-LLTDCRFEIDYFRVK  207 (235)
T ss_dssp             EEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHH-HHHTTTEEEEEEEEE
T ss_pred             CCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHH-HHHHcCCEEEEEEec
Confidence            999999996432  1111000000 00000         0       00111244555555 899999999988654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.67  E-value=1.1e-15  Score=138.07  Aligned_cols=153  Identities=15%  Similarity=0.215  Sum_probs=110.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++. +|+|+|+|+.+++.|+..+..                                
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~--------------------------------  109 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVAN--------------------------------  109 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHT--------------------------------
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            57889999999999999999976655 999999999999999987653                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+ .  + ++||+|+|..+++++.    .++...++.++.++|+|||.++
T Consensus       110 ----------------~~~~~~~~~~~~d~~~-~--~-~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~  165 (287)
T 1kpg_A          110 ----------------SENLRSKRVLLAGWEQ-F--D-EPVDRIVSIGAFEHFG----HERYDAFFSLAHRLLPADGVML  165 (287)
T ss_dssp             ----------------CCCCSCEEEEESCGGG-C--C-CCCSEEEEESCGGGTC----TTTHHHHHHHHHHHSCTTCEEE
T ss_pred             ----------------cCCCCCeEEEECChhh-C--C-CCeeEEEEeCchhhcC----hHHHHHHHHHHHHhcCCCCEEE
Confidence                            3344568899999865 2  3 7899999999997652    3577899999999999999999


Q ss_pred             EeeCCCchhhh-----------hhhhhhhhh-cccccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEK-----------NRRVSETTA-TNFQNIKL-YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..........           ......++. ..+.+..+ .++++.+ +++++||++++....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          166 LHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE-CASANGFTVTRVQSL  228 (287)
T ss_dssp             EEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH-HHHTTTCEEEEEEEC
T ss_pred             EEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHH-HHHhCCcEEEEEEeC
Confidence            96543221111           001111111 12222233 3455544 899999999887543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.67  E-value=4.6e-16  Score=138.86  Aligned_cols=108  Identities=18%  Similarity=0.355  Sum_probs=87.6

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .+....+++.+|||||||+|.++..+++..  .+|+|+|+|+.+++.|+.+..                           
T Consensus        43 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~---------------------------   93 (263)
T 3pfg_A           43 LVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP---------------------------   93 (263)
T ss_dssp             HHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT---------------------------
T ss_pred             HHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------------------------
Confidence            344445677999999999999999998873  489999999999999987421                           


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                                 ++.+.+.|+.+ .+. .++||+|+|.. +++|+.   ..++...++.++.++|
T Consensus        94 ---------------------------~~~~~~~d~~~-~~~-~~~fD~v~~~~~~l~~~~---~~~~~~~~l~~~~~~L  141 (263)
T 3pfg_A           94 ---------------------------DAVLHHGDMRD-FSL-GRRFSAVTCMFSSIGHLA---GQAELDAALERFAAHV  141 (263)
T ss_dssp             ---------------------------TSEEEECCTTT-CCC-SCCEEEEEECTTGGGGSC---HHHHHHHHHHHHHHTE
T ss_pred             ---------------------------CCEEEECChHH-CCc-cCCcCEEEEcCchhhhcC---CHHHHHHHHHHHHHhc
Confidence                                       47888999876 333 68899999997 887662   1256789999999999


Q ss_pred             CCCcEEEEee
Q 047406          214 RPGGIFVLEP  223 (290)
Q Consensus       214 kpgG~l~i~~  223 (290)
                      +|||.+++..
T Consensus       142 ~pgG~l~i~~  151 (263)
T 3pfg_A          142 LPDGVVVVEP  151 (263)
T ss_dssp             EEEEEEEECC
T ss_pred             CCCcEEEEEe
Confidence            9999999963

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.67  E-value=5.2e-16  Score=134.32  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.++.++.                                 
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---------------------------------   88 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP---------------------------------   88 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC---------------------------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC---------------------------------
Confidence            37889999999999999999886  4599999999999999887421                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|+.+ .+.+ ++||+|+|..+++|+.    +.....++.++.++|+|||.++
T Consensus        89 --------------------~~~~~~~~d~~~-~~~~-~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~  142 (220)
T 3hnr_A           89 --------------------KEFSITEGDFLS-FEVP-TSIDTIVSTYAFHHLT----DDEKNVAIAKYSQLLNKGGKIV  142 (220)
T ss_dssp             --------------------TTCCEESCCSSS-CCCC-SCCSEEEEESCGGGSC----HHHHHHHHHHHHHHSCTTCEEE
T ss_pred             --------------------CceEEEeCChhh-cCCC-CCeEEEEECcchhcCC----hHHHHHHHHHHHHhcCCCCEEE
Confidence                                257888889876 3555 8999999999997663    3344559999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhc-c-------cccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTAT-N-------FQNIKL-YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..+.+............... .       .....+ .++++.+ +++++||+++.....
T Consensus       143 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~v~~~~~~  201 (220)
T 3hnr_A          143 FADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT-IFENNGFHVTFTRLN  201 (220)
T ss_dssp             EEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH-HHHHTTEEEEEEECS
T ss_pred             EEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHH-HHHHCCCEEEEeecc
Confidence            986554333222211111111 1       111122 3455544 899999998766543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.67  E-value=1.3e-15  Score=134.71  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||+|||+|.++..++...  .+|+|+|+|+.+++.++.++..                               
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~-------------------------------   65 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQE-------------------------------   65 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            3578999999999999999998874  3899999999999999987654                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++ .++.+...|+.+ ++.++++||+|+|..+++|+      .+...++.++.++|+|||.+
T Consensus        66 -----------------~~~-~~v~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           66 -----------------KGV-ENVRFQQGTAES-LPFPDDSFDIITCRYAAHHF------SDVRKAVREVARVLKQDGRF  120 (239)
T ss_dssp             -----------------HTC-CSEEEEECBTTB-CCSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCC-CCeEEEeccccc-CCCCCCcEEEEEECCchhhc------cCHHHHHHHHHHHcCCCcEE
Confidence                             122 258888999866 56667899999999999765      35789999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhh--ccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTA--TNFQNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++...................  ....+.. +...++.+ +++++||++++...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~aGf~~~~~~~  173 (239)
T 1xxl_A          121 LLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQA-MFSANQLAYQDIQK  173 (239)
T ss_dssp             EEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHH-HHHHTTEEEEEEEE
T ss_pred             EEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHH-HHHHCCCcEEEEEe
Confidence            996432211111111111000  0112222 34455555 89999999877654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.66  E-value=1.8e-15  Score=142.74  Aligned_cols=156  Identities=13%  Similarity=0.143  Sum_probs=114.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.|+.++..                                
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  224 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------------------------------  224 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT--------------------------------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh--------------------------------
Confidence            3668999999999999999999999889999999 9999999886543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++..++.+...|+.+.. +.+ ++||+|++..++|+    |+++....+++++.+.|+|||.+
T Consensus       225 ----------------~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~----~~~~~~~~~l~~~~~~L~pgG~l  283 (363)
T 3dp7_A          225 ----------------LSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDC----FSEEEVISILTRVAQSIGKDSKV  283 (363)
T ss_dssp             ----------------CTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTT----SCHHHHHHHHHHHHHHCCTTCEE
T ss_pred             ----------------cCcccceEEEEccccccCCCCC-CCcCEEEEechhhh----CCHHHHHHHHHHHHHhcCCCcEE
Confidence                            334457999999997742 334 78999999999863    45677889999999999999999


Q ss_pred             EEeeCCCchhhhhhh--------hhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRR--------VSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....+........        ..............+.+++.+ +++++||+++++...
T Consensus       284 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll~~AGf~~v~~~~~  342 (363)
T 3dp7_A          284 YIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIR-CIENAGLEVEEIQDN  342 (363)
T ss_dssp             EEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHH-HHHTTTEEESCCCCC
T ss_pred             EEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHH-HHHHcCCeEEEEEeC
Confidence            996544322111100        000001111122345666666 899999999988765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.66  E-value=8.1e-16  Score=135.72  Aligned_cols=147  Identities=16%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++... ..+|+++|+|+.+++.|+.++..                                
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--------------------------------  138 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--------------------------------  138 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--------------------------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc--------------------------------
Confidence            367899999999999999988875 45799999999999999885432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+.+.|+.+ .+.+.++||+|+|..+++|+.    +++...++.++.++|+|||+++
T Consensus       139 -------------------~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~  194 (254)
T 1xtp_A          139 -------------------MPVGKFILASMET-ATLPPNTYDLIVIQWTAIYLT----DADFVKFFKHCQQALTPNGYIF  194 (254)
T ss_dssp             -------------------SSEEEEEESCGGG-CCCCSSCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------------CCceEEEEccHHH-CCCCCCCeEEEEEcchhhhCC----HHHHHHHHHHHHHhcCCCeEEE
Confidence                               1358889999876 455668999999999997652    3568899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +........   ..   ............++++.+ +++++||++++....
T Consensus       195 i~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          195 FKENCSTGD---RF---LVDKEDSSLTRSDIHYKR-LFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EEEEBC--C---CE---EEETTTTEEEBCHHHHHH-HHHHHTCCEEEEEEC
T ss_pred             EEecCCCcc---cc---eecccCCcccCCHHHHHH-HHHHCCCEEEEeeec
Confidence            976321110   00   000111122234455555 899999999988766

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.65  E-value=1.1e-15  Score=134.08  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=107.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|+.++..                                
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~--------------------------------  110 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGS--------------------------------  110 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTT--------------------------------
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhc--------------------------------
Confidence            35569999999999999998773  56899999999999999886543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+...++.+...|+.+. + +.++||+|+|..+++++.    .++...++.++.++|+|||.++
T Consensus       111 ----------------~~~~~~v~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~  168 (235)
T 3lcc_A          111 ----------------SPKAEYFSFVKEDVFTW-R-PTELFDLIFDYVFFCAIE----PEMRPAWAKSMYELLKPDGELI  168 (235)
T ss_dssp             ----------------SGGGGGEEEECCCTTTC-C-CSSCEEEEEEESSTTTSC----GGGHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCCCcceEEEECchhcC-C-CCCCeeEEEEChhhhcCC----HHHHHHHHHHHHHHCCCCcEEE
Confidence                            22334689999999773 2 456899999999997653    4678899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +...+....           .......+.++++.+ +++++||+++++...
T Consensus       169 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          169 TLMYPITDH-----------VGGPPYKVDVSTFEE-VLVPIGFKAVSVEEN  207 (235)
T ss_dssp             EEECCCSCC-----------CSCSSCCCCHHHHHH-HHGGGTEEEEEEEEC
T ss_pred             EEEeccccc-----------CCCCCccCCHHHHHH-HHHHcCCeEEEEEec
Confidence            865422110           000111244556655 899999999887665

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.65  E-value=1.3e-15  Score=138.89  Aligned_cols=119  Identities=13%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             hHHhhhhc-cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           53 FKVLKKEW-FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        53 l~~l~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      ...+...+ .++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|++++...+                     
T Consensus        72 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---------------------  128 (299)
T 3g2m_A           72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAP---------------------  128 (299)
T ss_dssp             HHHHHHHHCCCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSC---------------------
T ss_pred             HHHHHHhhCCCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcc---------------------
Confidence            33333333 34569999999999999999887  4589999999999999998765310                     


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                               .++..++.+.+.|+.+ ++. .++||+|+|. .+++|+    +.++...++.++.
T Consensus       129 -------------------------~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~~~~~~~~----~~~~~~~~l~~~~  177 (299)
T 3g2m_A          129 -------------------------ADVRDRCTLVQGDMSA-FAL-DKRFGTVVISSGSINEL----DEADRRGLYASVR  177 (299)
T ss_dssp             -------------------------HHHHTTEEEEECBTTB-CCC-SCCEEEEEECHHHHTTS----CHHHHHHHHHHHH
T ss_pred             -------------------------cccccceEEEeCchhc-CCc-CCCcCEEEECCcccccC----CHHHHHHHHHHHH
Confidence                                     0111468999999977 344 6889999976 445433    3456899999999


Q ss_pred             hhcCCCcEEEEeeCC
Q 047406          211 KLLRPGGIFVLEPQP  225 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~  225 (290)
                      ++|+|||+|++....
T Consensus       178 ~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          178 EHLEPGGKFLLSLAM  192 (299)
T ss_dssp             HHEEEEEEEEEEEEC
T ss_pred             HHcCCCcEEEEEeec
Confidence            999999999996543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=8.4e-16  Score=135.98  Aligned_cols=103  Identities=19%  Similarity=0.389  Sum_probs=88.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..++..+++|+|+|+.+++.++.+.                                  
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------------------------------   77 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------------------------------   77 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------------------------------
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------------------------------
Confidence            4678999999999999999999887779999999999999987741                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|+.+ .+ +.++||+|+|..+++|+      ++...++.++.++|+|||.++
T Consensus        78 --------------------~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~  129 (259)
T 2p35_A           78 --------------------PNTNFGKADLAT-WK-PAQKADLLYANAVFQWV------PDHLAVLSQLMDQLESGGVLA  129 (259)
T ss_dssp             --------------------TTSEEEECCTTT-CC-CSSCEEEEEEESCGGGS------TTHHHHHHHHGGGEEEEEEEE
T ss_pred             --------------------CCcEEEECChhh-cC-ccCCcCEEEEeCchhhC------CCHHHHHHHHHHhcCCCeEEE
Confidence                                247888888866 44 56889999999999877      467899999999999999999


Q ss_pred             EeeCC
Q 047406          221 LEPQP  225 (290)
Q Consensus       221 i~~~~  225 (290)
                      +..+.
T Consensus       130 ~~~~~  134 (259)
T 2p35_A          130 VQMPD  134 (259)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            97643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.64  E-value=1.3e-15  Score=144.90  Aligned_cols=164  Identities=20%  Similarity=0.259  Sum_probs=111.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++......         +       .|       
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------~-------~g-------  137 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK---------F-------FG-------  137 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH---------H-------HS-------
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh---------c-------cc-------
Confidence            3578999999999999999999886 5669999999999999999987652100         0       00       


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--C---CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--R---DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~---~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                        .....++.+.+.|+.+.  .   +.++++||+|+|..+++|+      .+...++.++.++|
T Consensus       138 ------------------~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~------~d~~~~l~~~~r~L  193 (383)
T 4fsd_A          138 ------------------SPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS------TNKLALFKEIHRVL  193 (383)
T ss_dssp             ------------------STTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHE
T ss_pred             ------------------ccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcC------CCHHHHHHHHHHHc
Confidence                              00113688999998762  1   5667899999999999765      35789999999999


Q ss_pred             CCCcEEEEeeCCCchh-hhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          214 RPGGIFVLEPQPWVSY-EKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +|||+|++........ ..................+..+++.+ +++++||+.+++...
T Consensus       194 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~aGF~~v~~~~~  251 (383)
T 4fsd_A          194 RDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR-LVAEAGFRDVRLVSV  251 (383)
T ss_dssp             EEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH-HHHHTTCCCEEEEEE
T ss_pred             CCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH-HHHHCCCceEEEEec
Confidence            9999999964321110 00000000001111111244466666 899999998866544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.64  E-value=2e-15  Score=136.02  Aligned_cols=115  Identities=22%  Similarity=0.258  Sum_probs=92.5

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+.++..                              
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~------------------------------  109 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARN------------------------------  109 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHT------------------------------
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh------------------------------
Confidence            3468899999999999999988775 445899999999999999987653                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                        .++..++.+.+.|+.+. +. +.++||+|+|..+++|..  ...++...++.++.++|+|||
T Consensus       110 ------------------~~~~~~v~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG  168 (298)
T 1ri5_A          110 ------------------MKRRFKVFFRAQDSYGR-HMDLGKEFDVISSQFSFHYAF--STSESLDIAQRNIARHLRPGG  168 (298)
T ss_dssp             ------------------SCCSSEEEEEESCTTTS-CCCCSSCEEEEEEESCGGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred             ------------------cCCCccEEEEECCcccc-ccCCCCCcCEEEECchhhhhc--CCHHHHHHHHHHHHHhcCCCC
Confidence                              23334688999998763 44 467899999999987631  123678899999999999999


Q ss_pred             EEEEeeCC
Q 047406          218 IFVLEPQP  225 (290)
Q Consensus       218 ~l~i~~~~  225 (290)
                      ++++..+.
T Consensus       169 ~l~~~~~~  176 (298)
T 1ri5_A          169 YFIMTVPS  176 (298)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEECC
Confidence            99997654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.64  E-value=2e-15  Score=131.74  Aligned_cols=107  Identities=18%  Similarity=0.361  Sum_probs=85.8

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.....++.+|||+|||+|.++..+++..+  +++|+|+|+.+++.|+.+.                             
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----------------------------   82 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----------------------------   82 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----------------------------
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----------------------------
Confidence            444446789999999999999999998854  8999999999999987742                             


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                               .++.+...|+.+ .+. .++||+|+|.. +++|+.   ..++...++.++.++|+
T Consensus        83 -------------------------~~~~~~~~d~~~-~~~-~~~~D~v~~~~~~~~~~~---~~~~~~~~l~~~~~~L~  132 (239)
T 3bxo_A           83 -------------------------PDATLHQGDMRD-FRL-GRKFSAVVSMFSSVGYLK---TTEELGAAVASFAEHLE  132 (239)
T ss_dssp             -------------------------TTCEEEECCTTT-CCC-SSCEEEEEECTTGGGGCC---SHHHHHHHHHHHHHTEE
T ss_pred             -------------------------CCCEEEECCHHH-ccc-CCCCcEEEEcCchHhhcC---CHHHHHHHHHHHHHhcC
Confidence                                     137788888866 333 57899999754 776552   23677899999999999


Q ss_pred             CCcEEEEee
Q 047406          215 PGGIFVLEP  223 (290)
Q Consensus       215 pgG~l~i~~  223 (290)
                      |||.+++..
T Consensus       133 pgG~l~~~~  141 (239)
T 3bxo_A          133 PGGVVVVEP  141 (239)
T ss_dssp             EEEEEEECC
T ss_pred             CCeEEEEEe
Confidence            999999975

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.64  E-value=2.2e-15  Score=136.75  Aligned_cols=108  Identities=17%  Similarity=0.262  Sum_probs=91.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|.++..++..++. .+|+|+|+|+.+++.|+.++..                               
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------------------------   69 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-------------------------------   69 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-------------------------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-------------------------------
Confidence            57899999999999999999998874 7999999999999999987543                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .+  .++.+.+.|+.+ ++. +++||+|+|..+++++      .+...++.++.++|+|||++
T Consensus        70 -----------------~~--~~v~~~~~d~~~-~~~-~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l  122 (284)
T 3gu3_A           70 -----------------LP--YDSEFLEGDATE-IEL-NDKYDIAICHAFLLHM------TTPETMLQKMIHSVKKGGKI  122 (284)
T ss_dssp             -----------------SS--SEEEEEESCTTT-CCC-SSCEEEEEEESCGGGC------SSHHHHHHHHHHTEEEEEEE
T ss_pred             -----------------cC--CceEEEEcchhh-cCc-CCCeeEEEECChhhcC------CCHHHHHHHHHHHcCCCCEE
Confidence                             11  268899999876 444 4689999999999765      35679999999999999999


Q ss_pred             EEeeCCC
Q 047406          220 VLEPQPW  226 (290)
Q Consensus       220 ~i~~~~~  226 (290)
                      ++..+.|
T Consensus       123 ~~~~~~~  129 (284)
T 3gu3_A          123 ICFEPHW  129 (284)
T ss_dssp             EEEECCH
T ss_pred             EEEecch
Confidence            9987764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.64  E-value=4.4e-15  Score=136.38  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=109.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+..+..                                
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~--------------------------------  135 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLAS--------------------------------  135 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHT--------------------------------
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            5788999999999999999998764 4999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++...+.+...|+.+.   + ++||+|+|..+++|+.    .++...++.++.++|+|||.++
T Consensus       136 ----------------~~~~~~v~~~~~d~~~~---~-~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          136 ----------------IDTNRSRQVLLQGWEDF---A-EPVDRIVSIEAFEHFG----HENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             ----------------SCCSSCEEEEESCGGGC---C-CCCSEEEEESCGGGTC----GGGHHHHHHHHHHHSCTTCEEE
T ss_pred             ----------------cCCCCceEEEECChHHC---C-CCcCEEEEeChHHhcC----HHHHHHHHHHHHHhcCCCcEEE
Confidence                            34445688999998652   2 7899999999997652    3678999999999999999999


Q ss_pred             EeeCCCchhhhh-----------hhhhhhhh-cccccccc-CchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKN-----------RRVSETTA-TNFQNIKL-YPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +...........           .....++. ..+....+ ..+++.+ +++++||++++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~l~~aGf~~~~~~~  253 (318)
T 2fk8_A          192 VQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVE-HGEKAGFTVPEPLS  253 (318)
T ss_dssp             EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHH-HHHHTTCBCCCCEE
T ss_pred             EEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHH-HHHhCCCEEEEEEe
Confidence            965432221110           00111111 11222233 3455544 89999999887644

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.64  E-value=5.6e-15  Score=133.76  Aligned_cols=179  Identities=15%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             HHHHhhhcCC-CccccccccccccccccCC--C-CCchh----hHHhhhhc-cCCCcEEEecCCCChhhHHHHhHcCCce
Q 047406           18 AQQLKKRKGK-DVFPFGNYKNYYGYRIGQG--L-NEDPR----FKVLKKEW-FEGKDCLDIGCNSGIITIQIAQKFNCRS   88 (290)
Q Consensus        18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~~~~~----l~~l~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~   88 (290)
                      ....+...+. .+|+.| ...||+..+.-.  + ...+.    .+.+...+ .++.+|||+|||+|.++..++..++..+
T Consensus        57 ~~~~~~~~~~p~~~i~g-~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~  135 (276)
T 2b3t_A           57 ALLTRRRDGEPIAHLTG-VREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCE  135 (276)
T ss_dssp             HHHHHHHTTCCHHHHSC-EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSE
T ss_pred             HHHHHHHcCCChhHeee-eeEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCE
Confidence            3333333343 677777 667887655211  1 11121    22333333 4678999999999999999998888889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeec
Q 047406           89 ILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQE  168 (290)
Q Consensus        89 i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  168 (290)
                      |+++|+|+.+++.|+.++..                                                .++. ++.+.+.
T Consensus       136 v~~vD~s~~~l~~a~~n~~~------------------------------------------------~~~~-~v~~~~~  166 (276)
T 2b3t_A          136 IIAVDRMPDAVSLAQRNAQH------------------------------------------------LAIK-NIHILQS  166 (276)
T ss_dssp             EEEECSSHHHHHHHHHHHHH------------------------------------------------HTCC-SEEEECC
T ss_pred             EEEEECCHHHHHHHHHHHHH------------------------------------------------cCCC-ceEEEEc
Confidence            99999999999999998765                                                2222 4889999


Q ss_pred             ccccCCCCCCCceeEEEEchhh-------------hhh---hhcC---CchHHHHHHHHHHhhcCCCcEEEEeeCCCchh
Q 047406          169 NFVHGRDSPEKYYDAILCLSVT-------------KWI---HLNW---GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY  229 (290)
Q Consensus       169 d~~~~~~~~~~~fD~I~~~~vl-------------~~~---~l~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  229 (290)
                      |+.+..  +.++||+|+|+...             +|.   .+..   +.+....++.++.++|+|||+++++.+.    
T Consensus       167 d~~~~~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~----  240 (276)
T 2b3t_A          167 DWFSAL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----  240 (276)
T ss_dssp             STTGGG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----
T ss_pred             chhhhc--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----
Confidence            987632  35789999997322             110   0000   0135578999999999999999997541    


Q ss_pred             hhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          230 EKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                                        ...+++.+ +++++||+.++...+
T Consensus       241 ------------------~~~~~~~~-~l~~~Gf~~v~~~~d  263 (276)
T 2b3t_A          241 ------------------QQGEAVRQ-AFILAGYHDVETCRD  263 (276)
T ss_dssp             ------------------SCHHHHHH-HHHHTTCTTCCEEEC
T ss_pred             ------------------hHHHHHHH-HHHHCCCcEEEEEec
Confidence                              11233434 788999998777655

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.63  E-value=6.7e-15  Score=135.73  Aligned_cols=155  Identities=16%  Similarity=0.099  Sum_probs=112.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.++..+++++|++ .+++.|+.++..                                
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~--------------------------------  210 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI--------------------------------  210 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh--------------------------------
Confidence            56789999999999999999999888899999999 999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+. +.+ +.||+|+|.++++++    +++....+++++.++|+|||.++
T Consensus       211 ----------------~~~~~~v~~~~~d~~~~-~~~-~~~D~v~~~~~l~~~----~~~~~~~~l~~~~~~L~pgG~l~  268 (335)
T 2r3s_A          211 ----------------QGVASRYHTIAGSAFEV-DYG-NDYDLVLLPNFLHHF----DVATCEQLLRKIKTALAVEGKVI  268 (335)
T ss_dssp             ----------------HTCGGGEEEEESCTTTS-CCC-SCEEEEEEESCGGGS----CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCCCcceEEEecccccC-CCC-CCCcEEEEcchhccC----CHHHHHHHHHHHHHhCCCCcEEE
Confidence                            23444699999998763 333 349999999998643    45677899999999999999888


Q ss_pred             EeeCCCchhhh---hhhhhhh-hhccc-cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEK---NRRVSET-TATNF-QNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..........   ....... ..... ....+..+++.+ +++++||+.+++...
T Consensus       269 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          269 VFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES-MFSNAGFSHSQLHSL  323 (335)
T ss_dssp             EEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH-HHHHTTCSEEEEECC
T ss_pred             EEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH-HHHHCCCCeeeEEEC
Confidence            86543221100   0001100 00111 222345566665 899999999988665

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.63  E-value=1.3e-15  Score=138.35  Aligned_cols=196  Identities=15%  Similarity=0.100  Sum_probs=109.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh---ccCCcchh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE---KGDGLEKN  137 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  137 (290)
                      .++.+|||||||+|.....++. .+..+|+|+|+|+.+++.|++++....         ..+.+.+..+   .-.+... 
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~-  138 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEP---------GAFNWSMYSQHACLIEGKGE-  138 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCT---------TCCCCHHHHHHHHHHHCSCC-
T ss_pred             CCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCc---------ccccchhhhhHHHHhcCccc-
Confidence            3678999999999996554443 345599999999999999988653200         0000000000   0000000 


Q ss_pred             hhhHHHHHHhhhcCCCccccCc-CcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          138 VTAAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                            .|...       ...+ ...+.+...|+.+..+     .+.++||+|+|..+++|+..  +.++...++.++.+
T Consensus       139 ------~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~r  203 (289)
T 2g72_A          139 ------CWQDK-------ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP--DLASFQRALDHITT  203 (289)
T ss_dssp             ------CHHHH-------HHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS--SHHHHHHHHHHHHT
T ss_pred             ------chhhh-------HHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcC--CHHHHHHHHHHHHH
Confidence                  00000       0000 0125567777765333     23467999999999987531  12478899999999


Q ss_pred             hcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCC---CCCCCCCCCcceeee
Q 047406          212 LLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGG---LSSSKTGFNRPIFLF  288 (290)
Q Consensus       212 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~---~~~~~~~~~~~~~~~  288 (290)
                      +|+|||+|++.......+..      .....+....+.++++.+ +++++||++++......   .......+.+.+|+.
T Consensus       204 ~LkpGG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~-~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (289)
T 2g72_A          204 LLRPGGHLLLIGALEESWYL------AGEARLTVVPVSEEEVRE-ALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAW  276 (289)
T ss_dssp             TEEEEEEEEEEEEESCCEEE------ETTEEEECCCCCHHHHHH-HHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEE
T ss_pred             hcCCCCEEEEEEecCcceEE------cCCeeeeeccCCHHHHHH-HHHHcCCeEEEeeEeeccccccccccCcceEEEEE
Confidence            99999999996310000000      000011122244555555 89999999887754421   111223455666654


Q ss_pred             c
Q 047406          289 R  289 (290)
Q Consensus       289 ~  289 (290)
                      +
T Consensus       277 ~  277 (289)
T 2g72_A          277 A  277 (289)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.63  E-value=3e-15  Score=135.39  Aligned_cols=117  Identities=19%  Similarity=0.338  Sum_probs=89.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++..  ..+|+|+|+|+.+++.|++++.....                             
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-----------------------------  104 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRK-----------------------------  104 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTT-----------------------------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhccc-----------------------------
Confidence            46789999999999999999887  34999999999999999987643100                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEc-hhhhhhhh-cCCchHHHHHHHHHHhhcCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCL-SVTKWIHL-NWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~-~vl~~~~l-~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                      ......+.+...|+.+ ++   .+.++||+|+|. ++++|+.- ..+.+....++.++.++|+|
T Consensus       105 ----------------~~~~~~~~~~~~d~~~-~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp  167 (293)
T 3thr_A          105 ----------------EPAFDKWVIEEANWLT-LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP  167 (293)
T ss_dssp             ----------------SHHHHTCEEEECCGGG-HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE
T ss_pred             ----------------ccccceeeEeecChhh-CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC
Confidence                            0011246777778765 23   456899999998 88866531 11235689999999999999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||++++..++
T Consensus       168 gG~l~~~~~~  177 (293)
T 3thr_A          168 GGLLVIDHRN  177 (293)
T ss_dssp             EEEEEEEEEC
T ss_pred             CeEEEEEeCC
Confidence            9999997654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.63  E-value=5.6e-15  Score=139.65  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=113.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++..                                
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  247 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTG--------------------------------  247 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------------------------------
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhh--------------------------------
Confidence            4678999999999999999999998889999999 9999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++.+++.+...|+.+  +.+. .||+|+|.+++|+    |+++....+++++.++|+|||+++
T Consensus       248 ----------------~~l~~~v~~~~~d~~~--~~p~-~~D~v~~~~vlh~----~~d~~~~~~L~~~~~~L~pgG~l~  304 (369)
T 3gwz_A          248 ----------------RGLADRCEILPGDFFE--TIPD-GADVYLIKHVLHD----WDDDDVVRILRRIATAMKPDSRLL  304 (369)
T ss_dssp             ----------------TTCTTTEEEEECCTTT--CCCS-SCSEEEEESCGGG----SCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ----------------cCcCCceEEeccCCCC--CCCC-CceEEEhhhhhcc----CCHHHHHHHHHHHHHHcCCCCEEE
Confidence                            3455679999999974  3343 8999999999964    456667799999999999999999


Q ss_pred             EeeCCCchhhhh-hhhhh-hhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKN-RRVSE-TTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +....+...... ..... ...........+.+++.+ +++++||++++++.
T Consensus       305 i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~-ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          305 VIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAA-LLEKSGLRVERSLP  355 (369)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHH-HHHTTTEEEEEEEE
T ss_pred             EEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHH-HHHHCCCeEEEEEE
Confidence            954322111000 00111 111112222355666766 89999999999977

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.62  E-value=4.6e-15  Score=127.50  Aligned_cols=107  Identities=19%  Similarity=0.339  Sum_probs=87.9

Q ss_pred             hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           57 KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        57 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      .....++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.++..                               
T Consensus        41 l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~-------------------------------   87 (218)
T 3ou2_A           41 LRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH-------------------------------   87 (218)
T ss_dssp             HTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG-------------------------------
T ss_pred             HhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc-------------------------------
Confidence            344567789999999999999999887  45999999999999988761                               


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           + ..++.+...|+.+.  .+.++||+|+|..+++|+.    ++....+++++.++|+||
T Consensus        88 ---------------------~-~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~----~~~~~~~l~~~~~~L~pg  139 (218)
T 3ou2_A           88 ---------------------G-LDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHVP----DDRFEAFWESVRSAVAPG  139 (218)
T ss_dssp             ---------------------C-CTTEEEEECCTTSC--CCSSCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEE
T ss_pred             ---------------------C-CCCeEEEecccccC--CCCCceeEEEEechhhcCC----HHHHHHHHHHHHHHcCCC
Confidence                                 1 13588999998763  5668999999999997663    345689999999999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      |.+++...
T Consensus       140 G~l~~~~~  147 (218)
T 3ou2_A          140 GVVEFVDV  147 (218)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEeC
Confidence            99999654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.62  E-value=4.7e-15  Score=129.72  Aligned_cols=103  Identities=19%  Similarity=0.376  Sum_probs=85.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+.+..                                 
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~---------------------------------   87 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP---------------------------------   87 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC---------------------------------
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc---------------------------------
Confidence            36789999999999999998886 33389999999999999887421                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+...|+.+ .+.+.++||+|+|..+++++      ++...++.++.++|+|||.++
T Consensus        88 -------------------~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~  141 (243)
T 3bkw_A           88 -------------------DTGITYERADLDK-LHLPQDSFDLAYSSLALHYV------EDVARLFRTVHQALSPGGHFV  141 (243)
T ss_dssp             -------------------SSSEEEEECCGGG-CCCCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------------cCCceEEEcChhh-ccCCCCCceEEEEecccccc------chHHHHHHHHHHhcCcCcEEE
Confidence                               1247888888876 45567899999999998765      357899999999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       142 ~~~  144 (243)
T 3bkw_A          142 FST  144 (243)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            965

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.62  E-value=4.6e-15  Score=132.76  Aligned_cols=137  Identities=14%  Similarity=0.198  Sum_probs=110.1

Q ss_pred             hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      .||..+...++++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|+.++..                      
T Consensus         4 ~RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----------------------   61 (225)
T 3kr9_A            4 KRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA----------------------   61 (225)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------
Confidence            6888898888999999999999999999999987777999999999999999999887                      


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                                .++.+.+.+...|..+..+. ..+||+|+...+-        .+.+..++....
T Consensus        62 --------------------------~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~G--------g~~i~~Il~~~~  106 (225)
T 3kr9_A           62 --------------------------HGLKEKIQVRLANGLAAFEE-TDQVSVITIAGMG--------GRLIARILEEGL  106 (225)
T ss_dssp             --------------------------TTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEEC--------HHHHHHHHHHTG
T ss_pred             --------------------------cCCCceEEEEECchhhhccc-CcCCCEEEEcCCC--------hHHHHHHHHHHH
Confidence                                      45566799999999775432 1369998864432        345688999999


Q ss_pred             hhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          211 KLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      ..|+|+|.|++++.                       ...+.. +.+|.+.||.+++.
T Consensus       107 ~~L~~~~~lVlq~~-----------------------~~~~~v-r~~L~~~Gf~i~~e  140 (225)
T 3kr9_A          107 GKLANVERLILQPN-----------------------NREDDL-RIWLQDHGFQIVAE  140 (225)
T ss_dssp             GGCTTCCEEEEEES-----------------------SCHHHH-HHHHHHTTEEEEEE
T ss_pred             HHhCCCCEEEEECC-----------------------CCHHHH-HHHHHHCCCEEEEE
Confidence            99999999999754                       112333 34788899987754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.62  E-value=1.9e-15  Score=133.84  Aligned_cols=181  Identities=17%  Similarity=0.121  Sum_probs=110.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++...         ...+.|.++....+.++...  
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--  122 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKE---------PGAFDWSPVVTYVCDLEGNR--  122 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTC---------TTCCCCHHHHHHHHHHTTTC--
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcC---------Cccccchhhhhhhhcccccc--
Confidence            4678999999999999998887643 58999999999999998865420         00111111111111111000  


Q ss_pred             HHHHHHhhhcCCCccccCcCcce-eEeecccccCCCCCC---CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIV-SFKQENFVHGRDSPE---KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~---~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                        +.+...       ...+...+ .+...|+.+..+.+.   ++||+|+|..++++++.  ..++...++.++.++|+||
T Consensus       123 --~~~~~~-------~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~~~l~~~~~~Lkpg  191 (265)
T 2i62_A          123 --MKGPEK-------EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP--DLPAYRTALRNLGSLLKPG  191 (265)
T ss_dssp             --SCHHHH-------HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEE
T ss_pred             --cchHHH-------HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC--ChHHHHHHHHHHHhhCCCC
Confidence              000000       00111236 888888877433344   78999999999975431  1247789999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |+|++.......+.      ......+....+.++++.+ ++.++||++++....
T Consensus       192 G~li~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~  239 (265)
T 2i62_A          192 GFLVMVDALKSSYY------MIGEQKFSSLPLGWETVRD-AVEEAGYTIEQFEVI  239 (265)
T ss_dssp             EEEEEEEESSCCEE------EETTEEEECCCCCHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             cEEEEEecCCCceE------EcCCccccccccCHHHHHH-HHHHCCCEEEEEEEe
Confidence            99999753211100      0001111222344555555 899999999887654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.62  E-value=1.8e-15  Score=131.39  Aligned_cols=155  Identities=8%  Similarity=0.008  Sum_probs=100.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++......            ...   ..|.        
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~------------~~~---~~~~--------   75 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQP------------HIT---SQGD--------   75 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCS------------EEE---EETT--------
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCc------------ccc---cccc--------
Confidence            57899999999999999999987  4589999999999999987432100            000   0000        


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCC-CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPE-KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                    .......++.+.+.|+.+ ++.+. ++||+|++..++++++    .+....++.++.++|+|||++
T Consensus        76 --------------~~~~~~~~v~~~~~d~~~-l~~~~~~~fD~v~~~~~l~~l~----~~~~~~~l~~~~r~LkpgG~~  136 (203)
T 1pjz_A           76 --------------FKVYAAPGIEIWCGDFFA-LTARDIGHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSG  136 (203)
T ss_dssp             --------------EEEEECSSSEEEEECCSS-STHHHHHSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEE
T ss_pred             --------------cccccCCccEEEECcccc-CCcccCCCEEEEEECcchhhCC----HHHHHHHHHHHHHHcCCCcEE
Confidence                          000012358899999876 34333 6899999998886653    356678999999999999985


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....+.   .. .      ..-....+.++++.+ ++.+ ||+++.....
T Consensus       137 ~l~~~~~~---~~-~------~~~~~~~~~~~el~~-~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          137 LLITLEYD---QA-L------LEGPPFSVPQTWLHR-VMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             EEEEESSC---SS-S------SSSCCCCCCHHHHHH-TSCS-SEEEEEEEES
T ss_pred             EEEEEecC---cc-c------cCCCCCCCCHHHHHH-HhcC-CcEEEEeccc
Confidence            54332221   00 0      000111244555555 6776 9998766544

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=3e-15  Score=135.08  Aligned_cols=144  Identities=22%  Similarity=0.300  Sum_probs=102.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++.  +..+|+|+|+|+.+++.++...                                  
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----------------------------------   99 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY----------------------------------   99 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----------------------------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC----------------------------------
Confidence            4778999999999999999888  4569999999999999987632                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|+.+ ++. +++||+|+|..+++|+      .+...++.++.++|+|||.++
T Consensus       100 --------------------~~~~~~~~d~~~-~~~-~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~l~  151 (279)
T 3ccf_A          100 --------------------PHLHFDVADARN-FRV-DKPLDAVFSNAMLHWV------KEPEAAIASIHQALKSGGRFV  151 (279)
T ss_dssp             --------------------TTSCEEECCTTT-CCC-SSCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------------CCCEEEECChhh-CCc-CCCcCEEEEcchhhhC------cCHHHHHHHHHHhcCCCcEEE
Confidence                                247788888866 444 5789999999999876      357799999999999999999


Q ss_pred             EeeCCCchhhhhh-hhhhhhhc-------ccccccc-CchhHHHHHHHHcCCeeeEec
Q 047406          221 LEPQPWVSYEKNR-RVSETTAT-------NFQNIKL-YPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       221 i~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      +............ .+......       ......+ .++++.+ +++++||++++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~  208 (279)
T 3ccf_A          152 AEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVN-ILEKQGFDVTYAA  208 (279)
T ss_dssp             EEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHH-HHHHHTEEEEEEE
T ss_pred             EEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHH-HHHHcCCEEEEEE
Confidence            9765432211111 11111100       0111123 3445544 8999999987654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.62  E-value=4.5e-15  Score=138.32  Aligned_cols=154  Identities=12%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             cC-CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FE-GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~-~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .+ +.+|||||||+|.++..+++.+|..+++++|+ +.+++.++.++..                               
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-------------------------------  224 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHA-------------------------------  224 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHh-------------------------------
Confidence            45 78999999999999999999998889999999 8899999987665                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+..+.+.+.||+|+|.+++|++    +++....+++++.++|+|||.+
T Consensus       225 -----------------~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~----~~~~~~~~l~~~~~~L~pgG~l  283 (352)
T 3mcz_A          225 -----------------HDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYF----DAREAREVIGHAAGLVKPGGAL  283 (352)
T ss_dssp             -----------------TTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGS----CHHHHHHHHHHHHHTEEEEEEE
T ss_pred             -----------------cCCCCceEEEeCCcccCcccCCCCccEEEEecccccC----CHHHHHHHHHHHHHHcCCCCEE
Confidence                             3344569999999977421134669999999999744    4567899999999999999999


Q ss_pred             EEeeCCCchhhhh---hhhhhh-hhccc-cccccCchhHHHHHHHHcCCeeeEe
Q 047406          220 VLEPQPWVSYEKN---RRVSET-TATNF-QNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       220 ~i~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      ++....+......   ...... ..... ....++.+++.+ +++++||++++.
T Consensus       284 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~  336 (352)
T 3mcz_A          284 LILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAG-VVRDAGLAVGER  336 (352)
T ss_dssp             EEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHH-HHHHTTCEEEEE
T ss_pred             EEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHH-HHHHCCCceeee
Confidence            9965332211100   000111 11111 222345566666 899999999985

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.61  E-value=3.7e-15  Score=128.40  Aligned_cols=146  Identities=21%  Similarity=0.223  Sum_probs=99.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+.+                                   
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------------------------------   93 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-----------------------------------   93 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-----------------------------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-----------------------------------
Confidence            46799999999999999999887  45899999999999998773                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC--CCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                          ..+.+...|+.+.  .+. +..+||+|+|..+++ .      .+...++.++.++|+|||
T Consensus        94 --------------------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~------~~~~~~l~~~~~~L~pgG  146 (227)
T 3e8s_A           94 --------------------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H------QDIIELLSAMRTLLVPGG  146 (227)
T ss_dssp             --------------------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S------SCCHHHHHHHHHTEEEEE
T ss_pred             --------------------cccccchhhHHhhcccccccCCCccEEEECchhh-h------hhHHHHHHHHHHHhCCCe
Confidence                                1244555555442  122 345699999999985 2      456799999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccc---------ccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNF---------QNIKL-YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++++....-...........+....+         ....+ ..+++.+ +++++||+++++...
T Consensus       147 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~  209 (227)
T 3e8s_A          147 ALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN-ALDMAGLRLVSLQEP  209 (227)
T ss_dssp             EEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH-HHHHTTEEEEEEECC
T ss_pred             EEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH-HHHHcCCeEEEEecC
Confidence            99997643221111100000000011         11123 4456655 899999999988764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.60  E-value=1.2e-14  Score=136.29  Aligned_cols=154  Identities=17%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++..+++++|+ +.+++.|+.++..                                
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  227 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD--------------------------------  227 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHh--------------------------------
Confidence            5678999999999999999999988789999999 9999999988765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+..  + ..||+|+|.+++|++    .++....++.++.++|+|||+++
T Consensus       228 ----------------~~~~~~v~~~~~d~~~~~--~-~~~D~v~~~~vl~~~----~~~~~~~~l~~~~~~L~pgG~l~  284 (374)
T 1qzz_A          228 ----------------AGLADRVTVAEGDFFKPL--P-VTADVVLLSFVLLNW----SDEDALTILRGCVRALEPGGRLL  284 (374)
T ss_dssp             ----------------TTCTTTEEEEECCTTSCC--S-CCEEEEEEESCGGGS----CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCCCCceEEEeCCCCCcC--C-CCCCEEEEeccccCC----CHHHHHHHHHHHHHhcCCCcEEE
Confidence                            344456999999987632  3 249999999999643    45666799999999999999998


Q ss_pred             EeeC--CCchhh--hhhhhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQ--PWVSYE--KNRRVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~--~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +...  ......  .......... .......+..+++.+ +++++||+++++...
T Consensus       285 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~aGf~~~~~~~~  339 (374)
T 1qzz_A          285 VLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVD-LAGSAGLALASERTS  339 (374)
T ss_dssp             EEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHH-HHHTTTEEEEEEEEE
T ss_pred             EEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHH-HHHHCCCceEEEEEC
Confidence            8654  211100  0000111100 011122245566665 899999999988765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.60  E-value=8.6e-15  Score=131.40  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             CchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           49 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        49 ~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      -..|+..+...+.++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|+.++..                    
T Consensus         8 Ls~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~--------------------   67 (230)
T 3lec_A            8 LSKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE--------------------   67 (230)
T ss_dssp             CCHHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------------------
Confidence            348899999999999999999999999999999987677899999999999999999887                    


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                                  .++.+.+.+..+|..+.. .+..+||+|+...+.        .+.+..++..
T Consensus        68 ----------------------------~gl~~~I~~~~gD~l~~~-~~~~~~D~IviaGmG--------g~lI~~IL~~  110 (230)
T 3lec_A           68 ----------------------------HGLTSKIDVRLANGLSAF-EEADNIDTITICGMG--------GRLIADILNN  110 (230)
T ss_dssp             ----------------------------TTCTTTEEEEECSGGGGC-CGGGCCCEEEEEEEC--------HHHHHHHHHH
T ss_pred             ----------------------------cCCCCcEEEEECchhhcc-ccccccCEEEEeCCc--------hHHHHHHHHH
Confidence                                        556667999999998753 223379998864443        3557889999


Q ss_pred             HHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          209 IWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       209 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ....|+++|.|++++.                       ...+. .+.+|.+.||.+++..
T Consensus       111 ~~~~l~~~~~lIlqp~-----------------------~~~~~-lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A          111 DIDKLQHVKTLVLQPN-----------------------NREDD-LRKWLAANDFEIVAED  147 (230)
T ss_dssp             TGGGGTTCCEEEEEES-----------------------SCHHH-HHHHHHHTTEEEEEEE
T ss_pred             HHHHhCcCCEEEEECC-----------------------CChHH-HHHHHHHCCCEEEEEE
Confidence            9999999999999864                       11233 3447888999987643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.60  E-value=5.2e-15  Score=130.92  Aligned_cols=105  Identities=13%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++.++ .                              
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~------------------------------   82 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A------------------------------   82 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T------------------------------
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h------------------------------
Confidence            3467889999999999999999886  458999999999999998754 1                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                         ....++.+...|+.+ ++.++++||+|+|..+++|+      ++...++.++.++|+|||.
T Consensus        83 -------------------~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~  136 (263)
T 2yqz_A           83 -------------------GVDRKVQVVQADARA-IPLPDESVHGVIVVHLWHLV------PDWPKVLAEAIRVLKPGGA  136 (263)
T ss_dssp             -------------------TSCTTEEEEESCTTS-CCSCTTCEEEEEEESCGGGC------TTHHHHHHHHHHHEEEEEE
T ss_pred             -------------------ccCCceEEEEccccc-CCCCCCCeeEEEECCchhhc------CCHHHHHHHHHHHCCCCcE
Confidence                               112358899999865 56667899999999999876      3578899999999999999


Q ss_pred             EEEe
Q 047406          219 FVLE  222 (290)
Q Consensus       219 l~i~  222 (290)
                      +++.
T Consensus       137 l~~~  140 (263)
T 2yqz_A          137 LLEG  140 (263)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=8.9e-15  Score=125.78  Aligned_cols=137  Identities=16%  Similarity=0.287  Sum_probs=104.5

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      +.+.....++.+|||+|||+|.++..+++ .+..+|+|+|+|+.+++.|+.++..                         
T Consensus        52 ~~l~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------  105 (205)
T 3grz_A           52 LGIERAMVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAAL-------------------------  105 (205)
T ss_dssp             HHHHHHCSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHH-------------------------
T ss_pred             HHHHHhccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-------------------------
Confidence            34444456789999999999999999876 4556999999999999999998765                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                             .++.. +.+...|+.+.   ..++||+|++...++         .+..++.++.++|
T Consensus       106 -----------------------~~~~~-v~~~~~d~~~~---~~~~fD~i~~~~~~~---------~~~~~l~~~~~~L  149 (205)
T 3grz_A          106 -----------------------NGIYD-IALQKTSLLAD---VDGKFDLIVANILAE---------ILLDLIPQLDSHL  149 (205)
T ss_dssp             -----------------------TTCCC-CEEEESSTTTT---CCSCEEEEEEESCHH---------HHHHHGGGSGGGE
T ss_pred             -----------------------cCCCc-eEEEecccccc---CCCCceEEEECCcHH---------HHHHHHHHHHHhc
Confidence                                   23333 88999998663   357899999987764         3478899999999


Q ss_pred             CCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCC
Q 047406          214 RPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGL  274 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~  274 (290)
                      +|||++++.....                     ...+.+. .+++++||++++....+++
T Consensus       150 ~~gG~l~~~~~~~---------------------~~~~~~~-~~~~~~Gf~~~~~~~~~~w  188 (205)
T 3grz_A          150 NEDGQVIFSGIDY---------------------LQLPKIE-QALAENSFQIDLKMRAGRW  188 (205)
T ss_dssp             EEEEEEEEEEEEG---------------------GGHHHHH-HHHHHTTEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCc---------------------ccHHHHH-HHHHHcCCceEEeeccCCE
Confidence            9999999963210                     0123333 3789999999988776443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=2.4e-14  Score=126.49  Aligned_cols=108  Identities=25%  Similarity=0.524  Sum_probs=85.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|+.++..                                
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--------------------------------   85 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE--------------------------------   85 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            45689999999999999999886  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchh-hhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSV-TKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v-l~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .+.  ++.+.+.|+.+ .+. .++||+|+|... ++++    ..++...++.++.++|+|||.+
T Consensus        86 ----------------~~~--~v~~~~~d~~~-~~~-~~~fD~v~~~~~~~~~~----~~~~~~~~l~~~~~~L~pgG~l  141 (252)
T 1wzn_A           86 ----------------RNL--KIEFLQGDVLE-IAF-KNEFDAVTMFFSTIMYF----DEEDLRKLFSKVAEALKPGGVF  141 (252)
T ss_dssp             ----------------TTC--CCEEEESCGGG-CCC-CSCEEEEEECSSGGGGS----CHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------cCC--ceEEEECChhh-ccc-CCCccEEEEcCCchhcC----CHHHHHHHHHHHHHHcCCCeEE
Confidence                            122  47888999876 333 368999999743 3222    3467889999999999999999


Q ss_pred             EEeeCCC
Q 047406          220 VLEPQPW  226 (290)
Q Consensus       220 ~i~~~~~  226 (290)
                      ++..++|
T Consensus       142 i~~~~~~  148 (252)
T 1wzn_A          142 ITDFPCW  148 (252)
T ss_dssp             EEEEEC-
T ss_pred             EEeccch
Confidence            9976543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=4.4e-15  Score=133.03  Aligned_cols=151  Identities=17%  Similarity=0.099  Sum_probs=104.0

Q ss_pred             hHHhhhhc--cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           53 FKVLKKEW--FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        53 l~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      .+.+...+  .++.+|||||||+|.++..+++  +..+|+|+|+|+.+++.++..                         
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~-------------------------   75 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH-------------------------   75 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC-------------------------
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc-------------------------
Confidence            34444444  5789999999999999999987  456999999999887766441                         


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                                  .  ++.+...|+.+ ++.+.++||+|+|..+++|+      ++...++.++.
T Consensus        76 ----------------------------~--~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~  118 (261)
T 3ege_A           76 ----------------------------P--QVEWFTGYAEN-LALPDKSVDGVISILAIHHF------SHLEKSFQEMQ  118 (261)
T ss_dssp             ----------------------------T--TEEEECCCTTS-CCSCTTCBSEEEEESCGGGC------SSHHHHHHHHH
T ss_pred             ----------------------------c--CCEEEECchhh-CCCCCCCEeEEEEcchHhhc------cCHHHHHHHHH
Confidence                                        1  58899999866 56677899999999999765      46789999999


Q ss_pred             hhcCCCcEEEEeeCCCchhh---hhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          211 KLLRPGGIFVLEPQPWVSYE---KNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++|+ ||.+++...+.....   ........ .. ..+..+.+.+... +++++||+.++....
T Consensus       119 ~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~l~~aGF~~v~~~~~  178 (261)
T 3ege_A          119 RIIR-DGTIVLLTFDIRLAQRIWLYDYFPFL-WE-DALRFLPLDEQIN-LLQENTKRRVEAIPF  178 (261)
T ss_dssp             HHBC-SSCEEEEEECGGGCCCCGGGGTCHHH-HH-HHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred             HHhC-CcEEEEEEcCCchhHHHHHHHHHHHH-hh-hhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence            9999 997766443211100   00000000 00 1112244444455 899999998876543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.59  E-value=1.2e-14  Score=134.66  Aligned_cols=117  Identities=12%  Similarity=0.101  Sum_probs=82.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+........                              
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~------------------------------   96 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNS------------------------------   96 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC------------------------------
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccc------------------------------
Confidence            4789999999999876665553 345899999999999999987644100                              


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC-----C--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----R--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                 .  ...-...+.|.+.|+...     +  +.+.++||+|+|.+++||+   +..++...++.++.++|+
T Consensus        97 -----------~--~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~---~~~~~~~~~l~~~~r~Lk  160 (302)
T 2vdw_A           97 -----------G--IKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYS---FHPRHYATVMNNLSELTA  160 (302)
T ss_dssp             -----------------CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGT---CSTTTHHHHHHHHHHHEE
T ss_pred             -----------c--ccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHh---CCHHHHHHHHHHHHHHcC
Confidence                       0  000000245656655221     1  2345789999999998764   233456899999999999


Q ss_pred             CCcEEEEeeCC
Q 047406          215 PGGIFVLEPQP  225 (290)
Q Consensus       215 pgG~l~i~~~~  225 (290)
                      |||+|++..++
T Consensus       161 pGG~~i~~~~~  171 (302)
T 2vdw_A          161 SGGKVLITTMD  171 (302)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCEEEEEeCC
Confidence            99999997654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.59  E-value=1.4e-14  Score=131.06  Aligned_cols=138  Identities=10%  Similarity=0.076  Sum_probs=110.9

Q ss_pred             CchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           49 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        49 ~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      -..|+..+...+.++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|+.++..                    
T Consensus         8 Ls~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~--------------------   67 (244)
T 3gnl_A            8 LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS--------------------   67 (244)
T ss_dssp             CCHHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH--------------------
T ss_pred             hhHHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------------------
Confidence            358899999999999999999999999999999987677899999999999999999876                    


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                                  .++.+.+.+..+|..+.. .+..+||+|++..+.        .+.+..++..
T Consensus        68 ----------------------------~gl~~~I~v~~gD~l~~~-~~~~~~D~IviagmG--------g~lI~~IL~~  110 (244)
T 3gnl_A           68 ----------------------------SGLTEQIDVRKGNGLAVI-EKKDAIDTIVIAGMG--------GTLIRTILEE  110 (244)
T ss_dssp             ----------------------------TTCTTTEEEEECSGGGGC-CGGGCCCEEEEEEEC--------HHHHHHHHHH
T ss_pred             ----------------------------cCCCceEEEEecchhhcc-CccccccEEEEeCCc--------hHHHHHHHHH
Confidence                                        556667999999998753 222369998864442        3567889999


Q ss_pred             HHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406          209 IWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE  267 (290)
Q Consensus       209 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~  267 (290)
                      ....|+++|.|++++.                       ...+. .+.+|.+.||.+++
T Consensus       111 ~~~~L~~~~~lIlq~~-----------------------~~~~~-lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A          111 GAAKLAGVTKLILQPN-----------------------IAAWQ-LREWSEQNNWLITS  145 (244)
T ss_dssp             TGGGGTTCCEEEEEES-----------------------SCHHH-HHHHHHHHTEEEEE
T ss_pred             HHHHhCCCCEEEEEcC-----------------------CChHH-HHHHHHHCCCEEEE
Confidence            9999999999999863                       11233 34478889998754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.58  E-value=1.4e-14  Score=134.07  Aligned_cols=151  Identities=16%  Similarity=0.096  Sum_probs=109.9

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||+|||+|..+..+++.+|..+++++|+ +.+++.|+.++..                                   
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-----------------------------------  212 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSS-----------------------------------  212 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHH-----------------------------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhh-----------------------------------
Confidence            8999999999999999999988889999999 9999999887654                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                                   .++..++.+...|+.+.  .+ ..||+|+|.+++|+    |+++....+++++.++|+|||.+++..
T Consensus       213 -------------~~~~~~v~~~~~d~~~~--~~-~~~D~v~~~~vl~~----~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          213 -------------LLAGERVSLVGGDMLQE--VP-SNGDIYLLSRIIGD----LDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             -------------HHHTTSEEEEESCTTTC--CC-SSCSEEEEESCGGG----CCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -------------cCCCCcEEEecCCCCCC--CC-CCCCEEEEchhccC----CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                         22334689999998763  33 67999999999863    445677899999999999999999965


Q ss_pred             CCCchhhh--hhhhhhh-hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          224 QPWVSYEK--NRRVSET-TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       224 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ..+.....  ....... ..........+.+++.+ +++++||+++++...
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~~~~  322 (334)
T 2ip2_A          273 RTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVD-LLGRGGFAVERIVDL  322 (334)
T ss_dssp             CCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHH-HHHHTTEEEEEEEEE
T ss_pred             eccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHH-HHHHCCCceeEEEEC
Confidence            43221100  0000010 00111122345566666 899999999988764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.58  E-value=5e-14  Score=121.17  Aligned_cols=106  Identities=16%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..                               
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------   86 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK-------------------------------   86 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            3578899999999999999999987778999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++ .++.+...|+.+..+ ....||+|++...+         .....++.++.++|+|||.+
T Consensus        87 -----------------~~~-~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~---------~~~~~~l~~~~~~LkpgG~l  138 (204)
T 3e05_A           87 -----------------FVA-RNVTLVEAFAPEGLD-DLPDPDRVFIGGSG---------GMLEEIIDAVDRRLKSEGVI  138 (204)
T ss_dssp             -----------------HTC-TTEEEEECCTTTTCT-TSCCCSEEEESCCT---------TCHHHHHHHHHHHCCTTCEE
T ss_pred             -----------------hCC-CcEEEEeCChhhhhh-cCCCCCEEEECCCC---------cCHHHHHHHHHHhcCCCeEE
Confidence                             223 458899999866432 23679999997765         25678999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       139 ~~~~~  143 (204)
T 3e05_A          139 VLNAV  143 (204)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.3e-14  Score=132.25  Aligned_cols=114  Identities=22%  Similarity=0.332  Sum_probs=92.0

Q ss_pred             hHHhhhhc-cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           53 FKVLKKEW-FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        53 l~~l~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      ++.+.... .++.+|||||||+|..+..+++.+ +..+|+|+|+|+.+++.|+.++...                     
T Consensus        26 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------------   84 (299)
T 3g5t_A           26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS---------------------   84 (299)
T ss_dssp             HHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc---------------------
Confidence            34444432 478999999999999999999876 6779999999999999999977651                     


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCC------CceeEEEEchhhhhhhhcCCchHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPE------KYYDAILCLSVTKWIHLNWGDDGLIT  204 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~fD~I~~~~vl~~~~l~~~~~~~~~  204 (290)
                                                .+...++.+.+.|+.+ ++.+.      ++||+|+|..+++|+       +...
T Consensus        85 --------------------------~~~~~~v~~~~~d~~~-~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~  130 (299)
T 3g5t_A           85 --------------------------PDTYKNVSFKISSSDD-FKFLGADSVDKQKIDMITAVECAHWF-------DFEK  130 (299)
T ss_dssp             --------------------------C-CCTTEEEEECCTTC-CGGGCTTTTTSSCEEEEEEESCGGGS-------CHHH
T ss_pred             --------------------------cCCCCceEEEEcCHHh-CCccccccccCCCeeEEeHhhHHHHh-------CHHH
Confidence                                      1223468999999876 34444      789999999999766       4678


Q ss_pred             HHHHHHhhcCCCcEEEE
Q 047406          205 LFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i  221 (290)
                      ++.++.++|+|||.|++
T Consensus       131 ~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          131 FQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEE
Confidence            99999999999999998

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.58  E-value=5.3e-14  Score=132.52  Aligned_cols=153  Identities=19%  Similarity=0.237  Sum_probs=112.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+|+|||||+|..+..+++.+|..+++..|+ |.+++.|+..+.                                 
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~---------------------------------  223 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFS---------------------------------  223 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSC---------------------------------
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhh---------------------------------
Confidence            4567999999999999999999999999999998 889988877532                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      ....+++++..+|+.+.   +...+|+|++.+++|    +|+++....+|+++.+.|+|||.++
T Consensus       224 ----------------~~~~~rv~~~~gD~~~~---~~~~~D~~~~~~vlh----~~~d~~~~~iL~~~~~al~pgg~ll  280 (353)
T 4a6d_A          224 ----------------FQEEEQIDFQEGDFFKD---PLPEADLYILARVLH----DWADGKCSHLLERIYHTCKPGGGIL  280 (353)
T ss_dssp             ----------------C--CCSEEEEESCTTTS---CCCCCSEEEEESSGG----GSCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred             ----------------hcccCceeeecCccccC---CCCCceEEEeeeecc----cCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                            12245799999999763   334589999999986    5678888999999999999999999


Q ss_pred             EeeCCCchhhhh----hhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKN----RRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +...........    ......+.........+.++|.+ +++++||+.+++...
T Consensus       281 i~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~-ll~~AGf~~v~v~~~  334 (353)
T 4a6d_A          281 VIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHM-LLSSAGFRDFQFKKT  334 (353)
T ss_dssp             EEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHH-HHHHHTCEEEEEECC
T ss_pred             EEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHH-HHHHCCCceEEEEEc
Confidence            965432211110    00111111123333455677766 899999999998776

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.58  E-value=3e-14  Score=123.78  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|.++..+++..|..+++|+|+|+.+++.|+.++..                                 
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~---------------------------------   87 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE---------------------------------   87 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH---------------------------------
Confidence            57899999999999999999998888999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCc--hHHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGD--DGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~--~~~~~~l~~~~~~LkpgG  217 (290)
                                     .++ .++.+.+.|+.+ ++  .+.+.||+|++.....|.......  -....++.++.++|+|||
T Consensus        88 ---------------~~~-~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  150 (214)
T 1yzh_A           88 ---------------VGV-PNIKLLWVDGSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENG  150 (214)
T ss_dssp             ---------------HCC-SSEEEEECCSSC-GGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC
T ss_pred             ---------------cCC-CCEEEEeCCHHH-HHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCc
Confidence                           223 368899999876 33  456789999998664332100000  023679999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       151 ~l~~~~~  157 (214)
T 1yzh_A          151 EIHFKTD  157 (214)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9999754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.57  E-value=4.9e-15  Score=123.40  Aligned_cols=133  Identities=15%  Similarity=0.193  Sum_probs=99.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++...  +++|+|+|+.+++.++.+                                   
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----------------------------------   58 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----------------------------------   58 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----------------------------------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----------------------------------
Confidence            5778999999999999999998763  899999999999998874                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+...|    .+.+.++||+|+|..+++++      ++...++.++.++|+|||.++
T Consensus        59 -------------------~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~  109 (170)
T 3i9f_A           59 -------------------FDSVITLSDP----KEIPDNSVDFILFANSFHDM------DDKQHVISEVKRILKDDGRVI  109 (170)
T ss_dssp             -------------------CTTSEEESSG----GGSCTTCEEEEEEESCSTTC------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------------CCCcEEEeCC----CCCCCCceEEEEEccchhcc------cCHHHHHHHHHHhcCCCCEEE
Confidence                               1247777777    24466899999999999765      357899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.........         ........+..+++.+ +++  ||++++....
T Consensus       110 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~l~--Gf~~~~~~~~  148 (170)
T 3i9f_A          110 IIDWRKENTG---------IGPPLSIRMDEKDYMG-WFS--NFVVEKRFNP  148 (170)
T ss_dssp             EEEECSSCCS---------SSSCGGGCCCHHHHHH-HTT--TEEEEEEECS
T ss_pred             EEEcCccccc---------cCchHhhhcCHHHHHH-HHh--CcEEEEccCC
Confidence            9643211000         0001112355566666 666  9999988776

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.57  E-value=2.9e-15  Score=137.54  Aligned_cols=137  Identities=18%  Similarity=0.297  Sum_probs=89.1

Q ss_pred             CCCcEEEecCCCCh----hhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh---hc
Q 047406           62 EGKDCLDIGCNSGI----ITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI---EK  130 (290)
Q Consensus        62 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  130 (290)
                      ++.+|||+|||+|.    +++.++..++    ..+|+|+|+|+.+++.|+.+++........+.+....   .|.   +.
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~---~f~~~~~~  181 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQR---YFMRGTGP  181 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHH---HEEECCTT
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHH---HhhccccC
Confidence            35799999999998    5556666544    3589999999999999998653210000000000000   000   00


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                      +.+....                  ..++...+.|.+.|+.+. +.+ .++||+|+|.++++|+    +++...+++.++
T Consensus       182 ~~~~~~v------------------~~~lr~~V~F~~~dl~~~-~~~~~~~fDlI~crnvliyf----~~~~~~~vl~~~  238 (274)
T 1af7_A          182 HEGLVRV------------------RQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYF----DKTTQEDILRRF  238 (274)
T ss_dssp             SCSEEEE------------------CHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGS----CHHHHHHHHHHH
T ss_pred             CCCceee------------------chhhcccCeEEecccCCC-CCCcCCCeeEEEECCchHhC----CHHHHHHHHHHH
Confidence            0000000                  012234699999999872 333 4789999999999655    356779999999


Q ss_pred             HhhcCCCcEEEEeeC
Q 047406          210 WKLLRPGGIFVLEPQ  224 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~  224 (290)
                      .+.|+|||+|++.+.
T Consensus       239 ~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          239 VPLLKPDGLLFAGHS  253 (274)
T ss_dssp             GGGEEEEEEEEECTT
T ss_pred             HHHhCCCcEEEEEec
Confidence            999999999999643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.57  E-value=3.2e-14  Score=123.89  Aligned_cols=147  Identities=14%  Similarity=0.248  Sum_probs=101.9

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      ..+... .++.+|||+|||+|.++..++..      +|+|+|+.+++.++.+                            
T Consensus        40 ~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------------------------   84 (219)
T 1vlm_A           40 QAVKCL-LPEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------------------------   84 (219)
T ss_dssp             HHHHHH-CCSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------------------------
T ss_pred             HHHHHh-CCCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------------------------
Confidence            334333 44899999999999998887653      9999999999988762                            


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                                  .+.+...|+.+ .+.+.+.||+|+|..+++++      ++...++.++.++|
T Consensus        85 ----------------------------~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L  129 (219)
T 1vlm_A           85 ----------------------------GVFVLKGTAEN-LPLKDESFDFALMVTTICFV------DDPERALKEAYRIL  129 (219)
T ss_dssp             ----------------------------TCEEEECBTTB-CCSCTTCEEEEEEESCGGGS------SCHHHHHHHHHHHE
T ss_pred             ----------------------------CCEEEEccccc-CCCCCCCeeEEEEcchHhhc------cCHHHHHHHHHHHc
Confidence                                        26677778765 45566789999999999765      35689999999999


Q ss_pred             CCCcEEEEeeCCCchhhhhhhhh-hhhhcccccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406          214 RPGGIFVLEPQPWVSYEKNRRVS-ETTATNFQNIKL-YPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +|||.+++...+..+........ ......+.+..+ ..+++.+ +++++||++++....
T Consensus       130 ~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          130 KKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMD-LMRKAGFEEFKVVQT  188 (219)
T ss_dssp             EEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             CCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHH-HHHHCCCeEEEEecc
Confidence            99999999754432221110000 000111223333 4455544 899999999887654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.57  E-value=3.6e-14  Score=120.20  Aligned_cols=143  Identities=16%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.++.++..                                
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~--------------------------------   76 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSI--------------------------------   76 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            46789999999999999999886  45999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|+.+ .+. .++||+|+|..+++|+.    .+....++.++.++|+|||.++
T Consensus        77 ----------------~~~-~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~~~~----~~~~~~~l~~~~~~L~~gG~l~  133 (199)
T 2xvm_A           77 ----------------ENL-DNLHTRVVDLNN-LTF-DRQYDFILSTVVLMFLE----AKTIPGLIANMQRCTKPGGYNL  133 (199)
T ss_dssp             ----------------HTC-TTEEEEECCGGG-CCC-CCCEEEEEEESCGGGSC----GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------CCC-CCcEEEEcchhh-CCC-CCCceEEEEcchhhhCC----HHHHHHHHHHHHHhcCCCeEEE
Confidence                            122 248888999876 344 67899999999997653    4578899999999999999987


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +........     .   .........+.++++.+ ++..  |++++....
T Consensus       134 ~~~~~~~~~-----~---~~~~~~~~~~~~~~l~~-~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          134 IVAAMDTAD-----Y---PCTVGFPFAFKEGELRR-YYEG--WERVKYNED  173 (199)
T ss_dssp             EEEEBCCSS-----S---CCCSCCSCCBCTTHHHH-HTTT--SEEEEEECC
T ss_pred             EEEeeccCC-----c---CCCCCCCCccCHHHHHH-HhcC--CeEEEeccc
Confidence            743211000     0   00011122355666666 5654  998877543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.57  E-value=7.8e-14  Score=119.21  Aligned_cols=151  Identities=17%  Similarity=0.183  Sum_probs=106.2

Q ss_pred             hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      +.+..+...+.++ +|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+.+...                      
T Consensus        19 ~~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~----------------------   73 (202)
T 2kw5_A           19 DFLVSVANQIPQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQE----------------------   73 (202)
T ss_dssp             SSHHHHHHHSCSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHhCCCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh----------------------
Confidence            4455555666777 9999999999999998886  45999999999999999987654                      


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                                .+.  ++.+...|+.+ .+.+.+.||+|+|...    |+  ..++...++.++.
T Consensus        74 --------------------------~~~--~~~~~~~d~~~-~~~~~~~fD~v~~~~~----~~--~~~~~~~~l~~~~  118 (202)
T 2kw5_A           74 --------------------------KGV--KITTVQSNLAD-FDIVADAWEGIVSIFC----HL--PSSLRQQLYPKVY  118 (202)
T ss_dssp             --------------------------HTC--CEEEECCBTTT-BSCCTTTCSEEEEECC----CC--CHHHHHHHHHHHH
T ss_pred             --------------------------cCC--ceEEEEcChhh-cCCCcCCccEEEEEhh----cC--CHHHHHHHHHHHH
Confidence                                      112  47888888866 3555688999999532    11  3467889999999


Q ss_pred             hhcCCCcEEEEeeCCCchhhhhhhhhhhhhcccc-ccccCchhHHHHHHHHcCCeeeEecc
Q 047406          211 KLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQ-NIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++|+|||.+++..........      ....... ...+.++++.+ +++  ||++++...
T Consensus       119 ~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~-~l~--Gf~v~~~~~  170 (202)
T 2kw5_A          119 QGLKPGGVFILEGFAPEQLQY------NTGGPKDLDLLPKLETLQS-ELP--SLNWLIANN  170 (202)
T ss_dssp             TTCCSSEEEEEEEECTTTGGG------TSCCSSSGGGCCCHHHHHH-HCS--SSCEEEEEE
T ss_pred             HhcCCCcEEEEEEeccccccC------CCCCCCcceeecCHHHHHH-Hhc--CceEEEEEE
Confidence            999999999997543221110      0000111 12355566655 666  999887644

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.57  E-value=2.2e-14  Score=119.65  Aligned_cols=105  Identities=20%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++..++..+|+++|+|+.+++.|+.++..                                
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   71 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN--------------------------------   71 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT--------------------------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            577899999999999999999988778999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++ +...|..+.++...++||+|++..++++          ..++.++.++|+|||.++
T Consensus        72 ----------------~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----------~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           72 ----------------LGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----------PGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             ----------------TTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----------TTHHHHHHHTCCTTCEEE
T ss_pred             ----------------hCCCCCE-EEecchHhhhhccCCCCCEEEECCcccH----------HHHHHHHHHhcCCCCEEE
Confidence                            3334356 7777775544443378999999888742          567899999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       125 ~~~~  128 (178)
T 3hm2_A          125 ANAV  128 (178)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.57  E-value=2.8e-14  Score=123.13  Aligned_cols=146  Identities=15%  Similarity=0.172  Sum_probs=102.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. + .+++|+|+|+.+++.++.+.                                  
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~----------------------------------   74 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL----------------------------------   74 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC----------------------------------
Confidence            47789999999999999999887 4 69999999999998886521                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                            ..+...|+.+. .+.++++||+|+|..+++|+      .+...++.++.++|+|||.+
T Consensus        75 ----------------------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l  126 (230)
T 3cc8_A           75 ----------------------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL------FDPWAVIEKVKPYIKQNGVI  126 (230)
T ss_dssp             ----------------------SEEEESCTTTCCCCSCTTCEEEEEEESCGGGS------SCHHHHHHHTGGGEEEEEEE
T ss_pred             ----------------------CcEEEcchhhcCCCCCCCccCEEEECChhhhc------CCHHHHHHHHHHHcCCCCEE
Confidence                                  24666776542 34456789999999999765      34579999999999999999


Q ss_pred             EEeeCCCchhhhhhhh-hhhhhc------cccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRV-SETTAT------NFQNIK-LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~-~~~~~~------~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..+........... ......      ...+.. +..+++.+ +++++||++++....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          127 LASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR-MFLKAGYSISKVDRV  185 (230)
T ss_dssp             EEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHH-HHHHTTEEEEEEEEE
T ss_pred             EEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHH-HHHHcCCeEEEEEec
Confidence            9977654332211111 000000      011223 34455554 899999999887654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.56  E-value=7.1e-14  Score=131.01  Aligned_cols=154  Identities=13%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++..                                
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  235 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------------------------------  235 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHh--------------------------------
Confidence            5678999999999999999999988889999999 9999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+. +.+  .+|+|++..++++    |.++....+++++.++|+|||.++
T Consensus       236 ----------------~~~~~~v~~~~~d~~~~-~~~--~~D~v~~~~vlh~----~~d~~~~~~l~~~~~~L~pgG~l~  292 (359)
T 1x19_A          236 ----------------KGVADRMRGIAVDIYKE-SYP--EADAVLFCRILYS----ANEQLSTIMCKKAFDAMRSGGRLL  292 (359)
T ss_dssp             ----------------TTCTTTEEEEECCTTTS-CCC--CCSEEEEESCGGG----SCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ----------------cCCCCCEEEEeCccccC-CCC--CCCEEEEechhcc----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence                            33444699999999763 333  3499999999864    345678999999999999999998


Q ss_pred             EeeCCCchhhh--hhhhhhhhhccccccc----cCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEK--NRRVSETTATNFQNIK----LYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..........  .......+........    +..+++.+ +++++||+++++...
T Consensus       293 i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~-ll~~aGf~~v~~~~~  348 (359)
T 1x19_A          293 ILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE-ILESLGYKDVTMVRK  348 (359)
T ss_dssp             EEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHH-HHHHHTCEEEEEEEE
T ss_pred             EEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHH-HHHHCCCceEEEEec
Confidence            85422211100  0000001000000111    55666766 899999999988765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.56  E-value=5.7e-14  Score=131.26  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=111.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++..+++++|+ +.+++.|+.++..                                
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  228 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD--------------------------------  228 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH--------------------------------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHh--------------------------------
Confidence            4678999999999999999999988889999999 9999999987765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+..  + ..||+|++.+++|+    |+++....+++++.++|+|||.++
T Consensus       229 ----------------~~~~~~v~~~~~d~~~~~--~-~~~D~v~~~~vl~~----~~~~~~~~~l~~~~~~L~pgG~l~  285 (360)
T 1tw3_A          229 ----------------EGLSDRVDVVEGDFFEPL--P-RKADAIILSFVLLN----WPDHDAVRILTRCAEALEPGGRIL  285 (360)
T ss_dssp             ----------------TTCTTTEEEEECCTTSCC--S-SCEEEEEEESCGGG----SCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------cCCCCceEEEeCCCCCCC--C-CCccEEEEcccccC----CCHHHHHHHHHHHHHhcCCCcEEE
Confidence                            334456999999987632  3 34999999999864    345666899999999999999999


Q ss_pred             EeeCC-Cchhhh--hhhhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQP-WVSYEK--NRRVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~-~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.... +.....  ......... .......+..+++.+ +++++||+++++...
T Consensus       286 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~~~~  339 (360)
T 1tw3_A          286 IHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDG-LAASAGLVVEEVRQL  339 (360)
T ss_dssp             EEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHH-HHHHTTEEEEEEEEE
T ss_pred             EEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHH-HHHHCCCeEEEEEeC
Confidence            87654 221100  000001000 011122345566655 899999999988765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.56  E-value=2.8e-14  Score=126.46  Aligned_cols=129  Identities=15%  Similarity=0.085  Sum_probs=97.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|+.++..                                
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------------------  116 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA--------------------------------  116 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999999999877778999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC---CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP---EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      .++. ++.+.+.|+.+ ++..   .++||+|+|..+          .+...++..+.++|+|||
T Consensus       117 ----------------~~~~-~v~~~~~d~~~-~~~~~~~~~~fD~V~~~~~----------~~~~~~l~~~~~~LkpgG  168 (240)
T 1xdz_A          117 ----------------LQLE-NTTFCHDRAET-FGQRKDVRESYDIVTARAV----------ARLSVLSELCLPLVKKNG  168 (240)
T ss_dssp             ----------------HTCS-SEEEEESCHHH-HTTCTTTTTCEEEEEEECC----------SCHHHHHHHHGGGEEEEE
T ss_pred             ----------------cCCC-CEEEEeccHHH-hcccccccCCccEEEEecc----------CCHHHHHHHHHHhcCCCC
Confidence                            2332 48899998866 2322   478999999763          346789999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ++++..+.....                   ...++.+ .+++.||++++..
T Consensus       169 ~l~~~~g~~~~~-------------------~~~~~~~-~l~~~g~~~~~~~  200 (240)
T 1xdz_A          169 LFVALKAASAEE-------------------ELNAGKK-AITTLGGELENIH  200 (240)
T ss_dssp             EEEEEECC-CHH-------------------HHHHHHH-HHHHTTEEEEEEE
T ss_pred             EEEEEeCCCchH-------------------HHHHHHH-HHHHcCCeEeEEE
Confidence            999964421110                   0022333 6788999887664

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=5.7e-15  Score=133.95  Aligned_cols=107  Identities=21%  Similarity=0.381  Sum_probs=88.4

Q ss_pred             hhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           52 RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        52 ~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      .++.+......+.+|||||||+|..+..+++.+  .+|+|+|+|+.+++.|+.                           
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~---------------------------   79 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR---------------------------   79 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC---------------------------
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh---------------------------
Confidence            355666666677899999999999999999874  489999999999876643                           


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                                                  ..++.+.+.|+.+ ++.++++||+|+|..++||+.       ...++.++.+
T Consensus        80 ----------------------------~~~v~~~~~~~e~-~~~~~~sfD~v~~~~~~h~~~-------~~~~~~e~~r  123 (257)
T 4hg2_A           80 ----------------------------HPRVTYAVAPAED-TGLPPASVDVAIAAQAMHWFD-------LDRFWAELRR  123 (257)
T ss_dssp             ----------------------------CTTEEEEECCTTC-CCCCSSCEEEEEECSCCTTCC-------HHHHHHHHHH
T ss_pred             ----------------------------cCCceeehhhhhh-hcccCCcccEEEEeeehhHhh-------HHHHHHHHHH
Confidence                                        1258899999866 677889999999999998873       4578999999


Q ss_pred             hcCCCcEEEEee
Q 047406          212 LLRPGGIFVLEP  223 (290)
Q Consensus       212 ~LkpgG~l~i~~  223 (290)
                      +|+|||+|++..
T Consensus       124 vLkpgG~l~~~~  135 (257)
T 4hg2_A          124 VARPGAVFAAVT  135 (257)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             HcCCCCEEEEEE
Confidence            999999998854

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.56  E-value=3.7e-14  Score=126.85  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=104.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHH------HHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSN------RVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~------~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      +.++.+|||||||+|.++..++..+ +..+|+|+|+|+.      +++.|++++..                        
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~------------------------   96 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA------------------------   96 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT------------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh------------------------
Confidence            3578999999999999999999986 4469999999997      89999887654                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecc-ccc-CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQEN-FVH-GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~-~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                              .++..++.+...| +.. ..+.+.++||+|+|..+++++.      +...+++.+.
T Consensus        97 ------------------------~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~------~~~~~~~~~~  146 (275)
T 3bkx_A           97 ------------------------GPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFA------SANALALLFK  146 (275)
T ss_dssp             ------------------------STTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSS------CHHHHHHHHH
T ss_pred             ------------------------cCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCC------CHHHHHHHHH
Confidence                                    2333468888887 432 2344568899999999997652      2345777777


Q ss_pred             hhcCCCcEEEEeeCCCchh--hhhhhh-hhhhh--------c-ccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          211 KLLRPGGIFVLEPQPWVSY--EKNRRV-SETTA--------T-NFQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~~--~~~~~~-~~~~~--------~-~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .+++|||++++........  ...... .....        . ..... .+.+.++.+ +++++||++++...-
T Consensus       147 ~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~-~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          147 NMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQ-IAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHH-HHHHHTCEEEECCCB
T ss_pred             HHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHH-HHHHCCCeeEEEEEe
Confidence            7788899999964322111  000000 00000        0 01111 234455544 899999998877554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.55  E-value=1.6e-13  Score=119.79  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             hhhccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           57 KKEWFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        57 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      ...+.++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|+.++..                           
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~---------------------------  101 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIER---------------------------  101 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHH---------------------------
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH---------------------------
Confidence            4445788999999999 999999998876 56999999999999999998765                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhh-------------cCCchHH
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHL-------------NWGDDGL  202 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l-------------~~~~~~~  202 (290)
                                           .++  ++.+.+.|+....+.++++||+|+|.....+..-             ..+.+..
T Consensus       102 ---------------------~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (230)
T 3evz_A          102 ---------------------NNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFS  158 (230)
T ss_dssp             ---------------------TTC--CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHH
T ss_pred             ---------------------hCC--CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHH
Confidence                                 233  5888999864333344588999999755432110             0122335


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ..++.++.++|+|||++++..+...                    ....++.+ ++++.||.+..+..
T Consensus       159 ~~~l~~~~~~LkpgG~l~~~~~~~~--------------------~~~~~~~~-~l~~~g~~~~~~~~  205 (230)
T 3evz_A          159 VKLLEEAFDHLNPGGKVALYLPDKE--------------------KLLNVIKE-RGIKLGYSVKDIKF  205 (230)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEEESCH--------------------HHHHHHHH-HHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCeEEEEEecccH--------------------hHHHHHHH-HHHHcCCceEEEEe
Confidence            7899999999999999999533100                    11133444 78899997766533

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.55  E-value=7e-14  Score=125.39  Aligned_cols=137  Identities=16%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++..+. +|+|+|+++.+++.|+.++..                                 
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~---------------------------------   94 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAY---------------------------------   94 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            6889999999999999999988554 999999999999999998876                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhh---hh-----------cCCchHHHHHH
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWI---HL-----------NWGDDGLITLF  206 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~---~l-----------~~~~~~~~~~l  206 (290)
                                     .++.+++.+.+.|+.+... .+.++||+|+|+......   +.           ......+..++
T Consensus        95 ---------------~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  159 (259)
T 3lpm_A           95 ---------------NQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTI  159 (259)
T ss_dssp             ---------------TTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHH
T ss_pred             ---------------CCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHH
Confidence                           4455569999999877422 346899999996443111   00           00113467899


Q ss_pred             HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ..+.++|+|||++++..++.                      ...++.. ++.+.||....+..
T Consensus       160 ~~~~~~LkpgG~l~~~~~~~----------------------~~~~~~~-~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          160 RVAASLLKQGGKANFVHRPE----------------------RLLDIID-IMRKYRLEPKRIQF  200 (259)
T ss_dssp             HHHHHHEEEEEEEEEEECTT----------------------THHHHHH-HHHHTTEEEEEEEE
T ss_pred             HHHHHHccCCcEEEEEEcHH----------------------HHHHHHH-HHHHCCCceEEEEE
Confidence            99999999999999965421                      1123333 67788888766543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.55  E-value=3.9e-14  Score=127.49  Aligned_cols=132  Identities=17%  Similarity=0.097  Sum_probs=100.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.+++.+|..++..+|+++|+|+.+++.|+.++..                                
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------------------  126 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV--------------------------------  126 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            467899999999999999999988888999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                      .++. ++.+.+.|+.+...  ...++||+|+|..+.          .+..++..+.++|+|||+
T Consensus       127 ----------------~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~----------~~~~ll~~~~~~LkpgG~  179 (249)
T 3g89_A          127 ----------------LGLK-GARALWGRAEVLAREAGHREAYARAVARAVA----------PLCVLSELLLPFLEVGGA  179 (249)
T ss_dssp             ----------------HTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEESSC----------CHHHHHHHHGGGEEEEEE
T ss_pred             ----------------hCCC-ceEEEECcHHHhhcccccCCCceEEEECCcC----------CHHHHHHHHHHHcCCCeE
Confidence                            3333 38899998866321  124789999997653          356889999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++..+.+....                   -.++.. .+.+.||+++++..-
T Consensus       180 l~~~~g~~~~~e-------------------~~~~~~-~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          180 AVAMKGPRVEEE-------------------LAPLPP-ALERLGGRLGEVLAL  212 (249)
T ss_dssp             EEEEECSCCHHH-------------------HTTHHH-HHHHHTEEEEEEEEE
T ss_pred             EEEEeCCCcHHH-------------------HHHHHH-HHHHcCCeEEEEEEe
Confidence            998655332110                   012223 677889998776543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.55  E-value=4.2e-15  Score=141.87  Aligned_cols=146  Identities=18%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++.  .                                
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~--------------------------------  149 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--G--------------------------------  149 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--T--------------------------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--C--------------------------------
Confidence            46789999999999999999886  34999999999999988763  0                                


Q ss_pred             HHHHHHhhhcCCCccccCcCccee-EeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVS-FKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                        +..... +...+. ..++.+.++||+|+|.++++|+      ++...++.++.++|+|||++
T Consensus       150 ------------------~~~~~~~~~~~~~-~~l~~~~~~fD~I~~~~vl~h~------~d~~~~l~~~~r~LkpgG~l  204 (416)
T 4e2x_A          150 ------------------IRVRTDFFEKATA-DDVRRTEGPANVIYAANTLCHI------PYVQSVLEGVDALLAPDGVF  204 (416)
T ss_dssp             ------------------CCEECSCCSHHHH-HHHHHHHCCEEEEEEESCGGGC------TTHHHHHHHHHHHEEEEEEE
T ss_pred             ------------------CCcceeeechhhH-hhcccCCCCEEEEEECChHHhc------CCHHHHHHHHHHHcCCCeEE
Confidence                              111111 111121 1123345789999999999776      46899999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +++.+...............   ..+..+.+.+....+++++||++++...
T Consensus       205 ~i~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~l~~ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          205 VFEDPYLGDIVAKTSFDQIF---DEHFFLFSATSVQGMAQRCGFELVDVQR  252 (416)
T ss_dssp             EEEEECHHHHHHHTCGGGCS---TTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEeCChHHhhhhcchhhhh---hhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence            99866433322222111111   2344445544455589999999887755

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.54  E-value=2.9e-14  Score=122.33  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..++..++..+++++|+|+.+++.|+.++..                                 
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------  111 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE---------------------------------  111 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence            57899999999999999999988878999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++.. +.+...|+.+. + +.++||+|+|..+          .....++..+.++|+|||.+++
T Consensus       112 ---------------~~~~~-v~~~~~d~~~~-~-~~~~~D~i~~~~~----------~~~~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          112 ---------------LKLEN-IEPVQSRVEEF-P-SEPPFDGVISRAF----------ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             ---------------TTCSS-EEEEECCTTTS-C-CCSCEEEEECSCS----------SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             ---------------cCCCC-eEEEecchhhC-C-ccCCcCEEEEecc----------CCHHHHHHHHHHhcCCCcEEEE
Confidence                           23333 88999998763 2 3578999998543          3457899999999999999999


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      ..+
T Consensus       164 ~~~  166 (207)
T 1jsx_A          164 LKG  166 (207)
T ss_dssp             EES
T ss_pred             EeC
Confidence            754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.54  E-value=2.1e-14  Score=126.64  Aligned_cols=109  Identities=15%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|+++...                                
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--------------------------------  105 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPR--------------------------------  105 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGG--------------------------------
T ss_pred             CCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHh--------------------------------
Confidence            46789999999999999998764 334899999999999999885432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEE-chhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILC-LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~-~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                      .+  .++.+.+.|+.+.. +.++++||+|+| .+.+. .+ .+.......++.++.++|+|||+
T Consensus       106 ----------------~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~-~~-~~~~~~~~~~l~~~~r~LkpgG~  165 (236)
T 1zx0_A          106 ----------------QT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS-EE-TWHTHQFNFIKNHAFRLLKPGGV  165 (236)
T ss_dssp             ----------------CS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB-GG-GTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             ----------------cC--CCeEEEecCHHHhhcccCCCceEEEEECCcccc-hh-hhhhhhHHHHHHHHHHhcCCCeE
Confidence                            11  35888888886621 456689999999 55431 11 12235567889999999999999


Q ss_pred             EEEe
Q 047406          219 FVLE  222 (290)
Q Consensus       219 l~i~  222 (290)
                      |++.
T Consensus       166 l~~~  169 (236)
T 1zx0_A          166 LTYC  169 (236)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.54  E-value=4e-14  Score=119.59  Aligned_cols=117  Identities=10%  Similarity=0.045  Sum_probs=84.8

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +...+.++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|++++..                           
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~---------------------------   66 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSD---------------------------   66 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHH---------------------------
Confidence            3444568899999999999999999987  56999999999999999998765                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhhhh--hhcCCchHHHHHHHHHHhh
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTKWI--HLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~~~--~l~~~~~~~~~~l~~~~~~  212 (290)
                                           .++ .++.+.+.+..+....++++||+|++.. .+++.  .+....+....++.++.++
T Consensus        67 ---------------------~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  124 (185)
T 3mti_A           67 ---------------------LGI-ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR  124 (185)
T ss_dssp             ---------------------HTC-CCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHH
T ss_pred             ---------------------cCC-CcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHh
Confidence                                 233 4578887666542123467899998862 22110  0000124567889999999


Q ss_pred             cCCCcEEEEee
Q 047406          213 LRPGGIFVLEP  223 (290)
Q Consensus       213 LkpgG~l~i~~  223 (290)
                      |+|||++++..
T Consensus       125 LkpgG~l~i~~  135 (185)
T 3mti_A          125 LEVGGRLAIMI  135 (185)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            99999999964

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.54  E-value=1.5e-13  Score=142.00  Aligned_cols=180  Identities=19%  Similarity=0.294  Sum_probs=124.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++.....                            
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~ln----------------------------  771 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN----------------------------  771 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT----------------------------
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccc----------------------------
Confidence            378999999999999999999876 336999999999999999987654100                            


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                    ....++ .++.+.++|+.+ ++...++||+|+|..+++|+.    ++....++.++.++|+|| .+
T Consensus       772 --------------Akr~gl-~nVefiqGDa~d-Lp~~d~sFDlVV~~eVLeHL~----dp~l~~~L~eI~RvLKPG-~L  830 (950)
T 3htx_A          772 --------------KEACNV-KSATLYDGSILE-FDSRLHDVDIGTCLEVIEHME----EDQACEFGEKVLSLFHPK-LL  830 (950)
T ss_dssp             --------------TTCSSC-SEEEEEESCTTS-CCTTSCSCCEEEEESCGGGSC----HHHHHHHHHHHHHTTCCS-EE
T ss_pred             --------------hhhcCC-CceEEEECchHh-CCcccCCeeEEEEeCchhhCC----hHHHHHHHHHHHHHcCCC-EE
Confidence                          000122 368999999977 566678999999999998763    345568999999999999 78


Q ss_pred             EEeeCCCchhhhhhhh-------------hhhhhccccccccCchhHHHH---HHHHcCCeeeEeccCCCCCCCCCCCCc
Q 047406          220 VLEPQPWVSYEKNRRV-------------SETTATNFQNIKLYPKEFQEI---LLDKIGFRTVEDIGSGGLSSSKTGFNR  283 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---ll~~~Gf~~v~~~~~~~~~~~~~~~~~  283 (290)
                      ++..++..........             .......-+.+.+..++|..+   ++++.||++ ++.+.|+......|+..
T Consensus       831 IISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsV-efvGVGDg~ep~vG~~T  909 (950)
T 3htx_A          831 IVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSV-EFSGVGGSGEVEPGFAS  909 (950)
T ss_dssp             EEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEE-EEEEESSCSSSTTCCSE
T ss_pred             EEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEE-EEEccCCCCCCCCCCcc
Confidence            8776543211000000             000111112234666666654   778889974 55555555444588888


Q ss_pred             ceeeecC
Q 047406          284 PIFLFRK  290 (290)
Q Consensus       284 ~~~~~~k  290 (290)
                      .+.+|+|
T Consensus       910 QiAVFtR  916 (950)
T 3htx_A          910 QIAIFRR  916 (950)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888874

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.54  E-value=7.5e-15  Score=130.58  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=80.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||||||+|..+..+++..+ .+++++|+|+.+++.|+++...                                
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~--------------------------------  105 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR--------------------------------  105 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG--------------------------------
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh--------------------------------
Confidence            5789999999999999999887654 5899999999999999886443                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .  ...+.+...|+.+. .+.++++||.|++-.+....+ .....+...++.++.++|||||+|
T Consensus       106 ----------------~--~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~-~~~~~~~~~~~~e~~rvLkPGG~l  166 (236)
T 3orh_A          106 ----------------Q--THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEE-TWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             ----------------C--SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGG-GTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             ----------------C--CCceEEEeehHHhhcccccccCCceEEEeeeecccc-hhhhcchhhhhhhhhheeCCCCEE
Confidence                            1  12466666665442 234668899998632211000 012257789999999999999999


Q ss_pred             EEe
Q 047406          220 VLE  222 (290)
Q Consensus       220 ~i~  222 (290)
                      ++.
T Consensus       167 ~f~  169 (236)
T 3orh_A          167 TYC  169 (236)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            884

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.53  E-value=5.1e-14  Score=128.27  Aligned_cols=154  Identities=14%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             cCCCcEEEecCCCChhhHHH----HhHcCCceE--EEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           61 FEGKDCLDIGCNSGIITIQI----AQKFNCRSI--LGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~l----a~~~~~~~i--~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .++.+|||||||+|.++..+    +..++...|  +|+|+|+.+++.|++.+...                         
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~-------------------------  105 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT-------------------------  105 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC-------------------------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc-------------------------
Confidence            35679999999999766533    344455544  99999999999998865420                         


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCc-ceeEeecccccCC-----CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGR-----DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-----~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                            .++.. .+.+.+.+..+..     +.++++||+|+|..+++|+      +++...+.+
T Consensus       106 ----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~------~d~~~~l~~  157 (292)
T 2aot_A          106 ----------------------SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV------KDIPATLKF  157 (292)
T ss_dssp             ----------------------SSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGC------SCHHHHHHH
T ss_pred             ----------------------cCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeec------CCHHHHHHH
Confidence                                  11111 1334444443210     1346789999999999887      467899999


Q ss_pred             HHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccc---cccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406          209 IWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNF---QNIK-LYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       209 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +.++|+|||.+++......+..  ...........   .+.. +.+.++.. +++++||+++....
T Consensus       158 ~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~  220 (292)
T 2aot_A          158 FHSLLGTNAKMLIIVVSGSSGW--DKLWKKYGSRFPQDDLCQYITSDDLTQ-MLDNLGLKYECYDL  220 (292)
T ss_dssp             HHHTEEEEEEEEEEEECTTSHH--HHHHHHHGGGSCCCTTCCCCCHHHHHH-HHHHHTCCEEEEEE
T ss_pred             HHHHcCCCcEEEEEEecCCccH--HHHHHHHHHhccCCCcccCCCHHHHHH-HHHHCCCceEEEEe
Confidence            9999999999999642211100  00000000000   1122 34455555 89999999877433

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.53  E-value=8.4e-14  Score=127.87  Aligned_cols=120  Identities=15%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+.+.......                            
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------------------------   83 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNR----------------------------   83 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSS----------------------------
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhc----------------------------
Confidence            47789999999999999988874 4569999999999999999876541000                            


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCC---CC--CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR---DS--PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                   . ......++.+.+.|+.+..   +.  +.++||+|+|..++||+.-  +.++...++.++.++|+|
T Consensus        84 -------------~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~~~Lkp  147 (313)
T 3bgv_A           84 -------------R-DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFE--SYEQADMMLRNACERLSP  147 (313)
T ss_dssp             -------------S-CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGG--SHHHHHHHHHHHHTTEEE
T ss_pred             -------------c-cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccC--CHHHHHHHHHHHHHHhCC
Confidence                         0 0001235888999987631   12  3458999999999998721  235678999999999999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||.+++..+.
T Consensus       148 gG~li~~~~~  157 (313)
T 3bgv_A          148 GGYFIGTTPN  157 (313)
T ss_dssp             EEEEEEEEEC
T ss_pred             CcEEEEecCC
Confidence            9999997654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.53  E-value=1.1e-13  Score=125.05  Aligned_cols=141  Identities=15%  Similarity=0.162  Sum_probs=103.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|+.++..                                
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~--------------------------------  164 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEK--------------------------------  164 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            37899999999999999999887  45999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++  ++.+...|+.+. +. .++||+|+|..+++|+.    .+....++.++.++|+|||+++
T Consensus       165 ----------------~~~--~~~~~~~d~~~~-~~-~~~fD~i~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~  220 (286)
T 3m70_A          165 ----------------ENL--NISTALYDINAA-NI-QENYDFIVSTVVFMFLN----RERVPSIIKNMKEHTNVGGYNL  220 (286)
T ss_dssp             ----------------TTC--CEEEEECCGGGC-CC-CSCEEEEEECSSGGGSC----GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------cCC--ceEEEEeccccc-cc-cCCccEEEEccchhhCC----HHHHHHHHHHHHHhcCCCcEEE
Confidence                            233  588999998773 33 68899999999997663    4678899999999999999988


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +........        ..........+.+.++.+ ++  .+|++++...
T Consensus       221 i~~~~~~~~--------~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~  259 (286)
T 3m70_A          221 IVAAMSTDD--------VPCPLPFSFTFAENELKE-YY--KDWEFLEYNE  259 (286)
T ss_dssp             EEEEBCCSS--------SCCSSCCSCCBCTTHHHH-HT--TTSEEEEEEC
T ss_pred             EEEecCCCC--------CCCCCCccccCCHHHHHH-Hh--cCCEEEEEEc
Confidence            753211100        000111123455666665 44  3498887643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.53  E-value=5.2e-14  Score=126.58  Aligned_cols=134  Identities=22%  Similarity=0.301  Sum_probs=101.5

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+...+.++.+|||+|||+|.+++.+++. +. +|+|+|+|+.+++.|+.++..                        
T Consensus       111 ~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~v~gvDi~~~~v~~a~~n~~~------------------------  164 (254)
T 2nxc_A          111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GG-KALGVDIDPMVLPQAEANAKR------------------------  164 (254)
T ss_dssp             HHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TC-EEEEEESCGGGHHHHHHHHHH------------------------
T ss_pred             HHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-CC-eEEEEECCHHHHHHHHHHHHH------------------------
Confidence            3445555678899999999999999998875 33 999999999999999998765                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                              +++.  +.+...|+.+.  .+.++||+|+++...         +.+..++.++.++
T Consensus       165 ------------------------~~~~--v~~~~~d~~~~--~~~~~fD~Vv~n~~~---------~~~~~~l~~~~~~  207 (254)
T 2nxc_A          165 ------------------------NGVR--PRFLEGSLEAA--LPFGPFDLLVANLYA---------ELHAALAPRYREA  207 (254)
T ss_dssp             ------------------------TTCC--CEEEESCHHHH--GGGCCEEEEEEECCH---------HHHHHHHHHHHHH
T ss_pred             ------------------------cCCc--EEEEECChhhc--CcCCCCCEEEECCcH---------HHHHHHHHHHHHH
Confidence                                    2332  77888887653  234689999997654         3457899999999


Q ss_pred             cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |+|||+++++....                     ...+++.+ +++++||++++....
T Consensus       208 LkpgG~lils~~~~---------------------~~~~~v~~-~l~~~Gf~~~~~~~~  244 (254)
T 2nxc_A          208 LVPGGRALLTGILK---------------------DRAPLVRE-AMAGAGFRPLEEAAE  244 (254)
T ss_dssp             EEEEEEEEEEEEEG---------------------GGHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             cCCCCEEEEEeecc---------------------CCHHHHHH-HHHHCCCEEEEEecc
Confidence            99999999963200                     11234444 788999999988776

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=118.19  Aligned_cols=119  Identities=17%  Similarity=0.245  Sum_probs=91.8

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ...+.+.+.++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.++.+...                        
T Consensus        33 ~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~------------------------   87 (215)
T 2pxx_A           33 RALLEPELRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH------------------------   87 (215)
T ss_dssp             HHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT------------------------
T ss_pred             HHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc------------------------
Confidence            3445555678899999999999999999887433 899999999999999875321                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhc----C-----CchHHH
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN----W-----GDDGLI  203 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~----~-----~~~~~~  203 (290)
                                                 ...+.+...|+.+ .+.+.++||+|++..+++++...    |     ......
T Consensus        88 ---------------------------~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (215)
T 2pxx_A           88 ---------------------------VPQLRWETMDVRK-LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD  139 (215)
T ss_dssp             ---------------------------CTTCEEEECCTTS-CCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHH
T ss_pred             ---------------------------CCCcEEEEcchhc-CCCCCCcccEEEECcchhhhccccccccccccchhHHHH
Confidence                                       1257888888866 35566789999999888654210    0     124668


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .++.++.++|+|||.+++...
T Consensus       140 ~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          140 QVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             HHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHhCcCCCEEEEEeC
Confidence            999999999999999999754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.52  E-value=6e-13  Score=115.76  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=96.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|++++..                               
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~-------------------------------   99 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDT-------------------------------   99 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            357889999999999999999887  56999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+++.+...|+.+..+. ...||+|++...+          ... ++.++.++|+|||++
T Consensus       100 -----------------~g~~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~~----------~~~-~l~~~~~~LkpgG~l  150 (204)
T 3njr_A          100 -----------------YGLSPRMRAVQGTAPAALAD-LPLPEAVFIGGGG----------SQA-LYDRLWEWLAPGTRI  150 (204)
T ss_dssp             -----------------TTCTTTEEEEESCTTGGGTT-SCCCSEEEECSCC----------CHH-HHHHHHHHSCTTCEE
T ss_pred             -----------------cCCCCCEEEEeCchhhhccc-CCCCCEEEECCcc----------cHH-HHHHHHHhcCCCcEE
Confidence                             34444688999998763222 3579999986543          234 899999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++......                     ...+..+ ++++.||++..+..
T Consensus       151 v~~~~~~~---------------------~~~~~~~-~l~~~g~~i~~i~~  179 (204)
T 3njr_A          151 VANAVTLE---------------------SETLLTQ-LHARHGGQLLRIDI  179 (204)
T ss_dssp             EEEECSHH---------------------HHHHHHH-HHHHHCSEEEEEEE
T ss_pred             EEEecCcc---------------------cHHHHHH-HHHhCCCcEEEEEe
Confidence            99754211                     0122333 67889998777643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.52  E-value=7.7e-14  Score=122.35  Aligned_cols=121  Identities=16%  Similarity=0.171  Sum_probs=92.5

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ....++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++.+.                               
T Consensus        44 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------------------------------   90 (226)
T 3m33_A           44 RLLTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA-------------------------------   90 (226)
T ss_dssp             HHCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC-------------------------------
T ss_pred             hcCCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC-------------------------------
Confidence            33467899999999999999999887  459999999999999998741                               


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                             .++.+.+.|+.+.++.+ +++||+|+|..            ++..++.++.++|+||
T Consensus        91 -----------------------~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------------~~~~~l~~~~~~Lkpg  135 (226)
T 3m33_A           91 -----------------------PHADVYEWNGKGELPAGLGAPFGLIVSRR------------GPTSVILRLPELAAPD  135 (226)
T ss_dssp             -----------------------TTSEEEECCSCSSCCTTCCCCEEEEEEES------------CCSGGGGGHHHHEEEE
T ss_pred             -----------------------CCceEEEcchhhccCCcCCCCEEEEEeCC------------CHHHHHHHHHHHcCCC
Confidence                                   14788999986656666 78999999862            2346678999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      |.++....                      ......+.. ++.++||+.+...
T Consensus       136 G~l~~~~~----------------------~~~~~~~~~-~l~~~Gf~~~~~~  165 (226)
T 3m33_A          136 AHFLYVGP----------------------RLNVPEVPE-RLAAVGWDIVAED  165 (226)
T ss_dssp             EEEEEEES----------------------SSCCTHHHH-HHHHTTCEEEEEE
T ss_pred             cEEEEeCC----------------------cCCHHHHHH-HHHHCCCeEEEEE
Confidence            99993211                      122334444 7788898877654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.52  E-value=3.9e-14  Score=127.90  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=100.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..||+.  +.+|+|+|+|+.+++.|++.....       +........    .+-+.+     
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~-------~~~~~~~~~----~~~~~~-----  128 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLS-------YTEEPLAEI----AGAKVF-----  128 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCC-------EEEEECTTS----TTCEEE-----
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccc-------ccccccccc----cccccc-----
Confidence            47889999999999999999986  458999999999999986532100       000000000    000000     


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .....++.+.++|+.+ ++.. .++||+|++..++++++    .+....++.++.++|+|||++
T Consensus       129 ----------------~~~~~~i~~~~~D~~~-l~~~~~~~FD~V~~~~~l~~l~----~~~~~~~l~~~~~~LkpGG~l  187 (252)
T 2gb4_A          129 ----------------KSSSGSISLYCCSIFD-LPRANIGKFDRIWDRGALVAIN----PGDHDRYADIILSLLRKEFQY  187 (252)
T ss_dssp             ----------------EETTSSEEEEESCTTT-GGGGCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEE
T ss_pred             ----------------ccCCCceEEEECcccc-CCcccCCCEEEEEEhhhhhhCC----HHHHHHHHHHHHHHcCCCeEE
Confidence                            0012358999999977 3433 37899999998886553    356778999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++....+.   .. .      .......+.++++.+ ++.. +|+++....
T Consensus       188 ~l~~~~~~---~~-~------~~g~~~~~~~~el~~-~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          188 LVAVLSYD---PT-K------HAGPPFYVPSAELKR-LFGT-KCSMQCLEE  226 (252)
T ss_dssp             EEEEEECC---TT-S------CCCSSCCCCHHHHHH-HHTT-TEEEEEEEE
T ss_pred             EEEEEecC---Cc-c------CCCCCCCCCHHHHHH-HhhC-CeEEEEEec
Confidence            75432111   00 0      001112245566666 6665 699876643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.52  E-value=1.1e-13  Score=126.85  Aligned_cols=152  Identities=18%  Similarity=0.234  Sum_probs=105.1

Q ss_pred             HHHhhhcC-CCccccccccccccccccCC--C-CCchh----hHHhhhhc--cCCCcEEEecCCCChhhHHHHhHcCCce
Q 047406           19 QQLKKRKG-KDVFPFGNYKNYYGYRIGQG--L-NEDPR----FKVLKKEW--FEGKDCLDIGCNSGIITIQIAQKFNCRS   88 (290)
Q Consensus        19 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~----l~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~   88 (290)
                      ...+...+ ..+|+.| ..+||+..|.-.  + ...+.    .+.+...+  .++.+|||+|||+|.+++.++.. +..+
T Consensus        71 ~~~~r~~~~p~~yi~g-~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~  148 (284)
T 1nv8_A           71 LVEKRASGYPLHYILG-EKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAI  148 (284)
T ss_dssp             HHHHHHTTCCHHHHHT-EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCE
T ss_pred             HHHHHHCCCCCeEEee-eeEECCeEEEeCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCE
Confidence            33333444 3788888 678988776311  1 11121    22232222  26789999999999999999998 8889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeec
Q 047406           89 ILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQE  168 (290)
Q Consensus        89 i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  168 (290)
                      |+|+|+|+.+++.|+.++..                                                .++..++.|.+.
T Consensus       149 v~~vDis~~al~~A~~n~~~------------------------------------------------~~l~~~v~~~~~  180 (284)
T 1nv8_A          149 VFATDVSSKAVEIARKNAER------------------------------------------------HGVSDRFFVRKG  180 (284)
T ss_dssp             EEEEESCHHHHHHHHHHHHH------------------------------------------------TTCTTSEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHH------------------------------------------------cCCCCceEEEEC
Confidence            99999999999999998876                                                344445899999


Q ss_pred             ccccCCCCCCCce---eEEEEchh------------hh--hhhhcCCchHHHHHHHHHH-hhcCCCcEEEEeeC
Q 047406          169 NFVHGRDSPEKYY---DAILCLSV------------TK--WIHLNWGDDGLITLFMRIW-KLLRPGGIFVLEPQ  224 (290)
Q Consensus       169 d~~~~~~~~~~~f---D~I~~~~v------------l~--~~~l~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~  224 (290)
                      |+.+..   .++|   |+|+|+.-            .+  ...+..+.+ ...++.++. +.|+|||.++++.+
T Consensus       181 D~~~~~---~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~d-gl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          181 EFLEPF---KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGED-GLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             STTGGG---GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTT-SCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             cchhhc---ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCc-HHHHHHHHHHhcCCCCCEEEEEEC
Confidence            987632   2478   99999621            10  011221222 237899999 99999999999876

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.52  E-value=1.4e-13  Score=120.38  Aligned_cols=113  Identities=9%  Similarity=0.114  Sum_probs=86.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|.++..+|+.++..+++|+|+|+.+++.|+.++..                                 
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~---------------------------------   84 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD---------------------------------   84 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH---------------------------------
Confidence            57899999999999999999998888999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG  217 (290)
                                     .++ .++.+.+.|+.+ ++  .+.+.||.|++.....|..-.....  ....++.++.++|+|||
T Consensus        85 ---------------~~~-~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG  147 (213)
T 2fca_A           85 ---------------SEA-QNVKLLNIDADT-LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG  147 (213)
T ss_dssp             ---------------SCC-SSEEEECCCGGG-HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC
T ss_pred             ---------------cCC-CCEEEEeCCHHH-HHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCC
Confidence                           233 358899999876 22  3567899999865443321000000  13678999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .+++...
T Consensus       148 ~l~~~td  154 (213)
T 2fca_A          148 SIHFKTD  154 (213)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9999754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.52  E-value=5.7e-14  Score=131.44  Aligned_cols=151  Identities=13%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..+++.++..+++++|+ +.++.  +..+.                                 
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~---------------------------------  226 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLD---------------------------------  226 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCC---------------------------------
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccc---------------------------------
Confidence            5678999999999999999999998889999999 44443  11100                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                     ..++..++.+...|+.+.  .|  +||+|++.+++|+    |+++....+++++.++|+|||.++
T Consensus       227 ---------------~~~~~~~v~~~~~d~~~~--~p--~~D~v~~~~vlh~----~~d~~~~~~L~~~~~~LkpgG~l~  283 (348)
T 3lst_A          227 ---------------APDVAGRWKVVEGDFLRE--VP--HADVHVLKRILHN----WGDEDSVRILTNCRRVMPAHGRVL  283 (348)
T ss_dssp             ---------------CGGGTTSEEEEECCTTTC--CC--CCSEEEEESCGGG----SCHHHHHHHHHHHHHTCCTTCEEE
T ss_pred             ---------------ccCCCCCeEEEecCCCCC--CC--CCcEEEEehhccC----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence                           123445799999999743  33  8999999999964    345666899999999999999999


Q ss_pred             EeeCCCchhhhh--hhhh-hhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKN--RRVS-ETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +....+......  .... ............+.+++.+ +++++||+++++...
T Consensus       284 i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~~~~  336 (348)
T 3lst_A          284 VIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEP-LFTAAGLRLDRVVGT  336 (348)
T ss_dssp             EEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHH-HHHHCCCceEEEEEC
Confidence            965432211000  0000 0111112222345566666 899999999998764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=8.1e-14  Score=122.76  Aligned_cols=112  Identities=16%  Similarity=0.117  Sum_probs=87.8

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      +..+.....++.+|||+|||+|.++..+++..+  +|+|+|+|+.+++.|+.+..                         
T Consensus        47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------------------------   99 (245)
T 3ggd_A           47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------------------------   99 (245)
T ss_dssp             HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------------------------
T ss_pred             HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------------------------
Confidence            334444557889999999999999999999855  89999999999999987431                         


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----CCceeEEEEchhhhhhhhcCCchHHHHHHH
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----EKYYDAILCLSVTKWIHLNWGDDGLITLFM  207 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~  207 (290)
                                                 ..++.+.+.|+.+. +..     ...||+|+|..+++|+.    .++...++.
T Consensus       100 ---------------------------~~~~~~~~~d~~~~-~~~~~~~~~~~~d~v~~~~~~~~~~----~~~~~~~l~  147 (245)
T 3ggd_A          100 ---------------------------AANISYRLLDGLVP-EQAAQIHSEIGDANIYMRTGFHHIP----VEKRELLGQ  147 (245)
T ss_dssp             ---------------------------CTTEEEEECCTTCH-HHHHHHHHHHCSCEEEEESSSTTSC----GGGHHHHHH
T ss_pred             ---------------------------ccCceEEECccccc-ccccccccccCccEEEEcchhhcCC----HHHHHHHHH
Confidence                                       12588888888662 111     12489999999997663    457899999


Q ss_pred             HHHhhcCCCcEEEEee
Q 047406          208 RIWKLLRPGGIFVLEP  223 (290)
Q Consensus       208 ~~~~~LkpgG~l~i~~  223 (290)
                      ++.++|+|||++++..
T Consensus       148 ~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          148 SLRILLGKQGAMYLIE  163 (245)
T ss_dssp             HHHHHHTTTCEEEEEE
T ss_pred             HHHHHcCCCCEEEEEe
Confidence            9999999999987754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.51  E-value=7.1e-14  Score=120.24  Aligned_cols=107  Identities=16%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .+.....++.+|||+|||+|.++..+    +..+++|+|+|+.+++.++.+.                            
T Consensus        29 ~l~~~~~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~----------------------------   76 (211)
T 2gs9_A           29 ALKGLLPPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA----------------------------   76 (211)
T ss_dssp             HHHTTCCCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC----------------------------
T ss_pred             HHHHhcCCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC----------------------------
Confidence            34444457899999999999988775    2338999999999999988742                            


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                                ..+.+...|+.+ ++.++++||+|+|..+++|+      ++...++.++.++|+
T Consensus        77 --------------------------~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~~~~~~l~~~~~~L~  123 (211)
T 2gs9_A           77 --------------------------PEATWVRAWGEA-LPFPGESFDVVLLFTTLEFV------EDVERVLLEARRVLR  123 (211)
T ss_dssp             --------------------------TTSEEECCCTTS-CCSCSSCEEEEEEESCTTTC------SCHHHHHHHHHHHEE
T ss_pred             --------------------------CCcEEEEccccc-CCCCCCcEEEEEEcChhhhc------CCHHHHHHHHHHHcC
Confidence                                      247788888765 45667899999999999765      357899999999999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||.+++...+.
T Consensus       124 pgG~l~i~~~~~  135 (211)
T 2gs9_A          124 PGGALVVGVLEA  135 (211)
T ss_dssp             EEEEEEEEEECT
T ss_pred             CCCEEEEEecCC
Confidence            999999976543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.50  E-value=5.3e-14  Score=121.49  Aligned_cols=106  Identities=20%  Similarity=0.365  Sum_probs=87.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+.++..                                
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--------------------------------   95 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR--------------------------------   95 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT--------------------------------
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc--------------------------------
Confidence            456899999999999999998874  4899999999999999885432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+.+.|+.+. + +.++||+|+|..+++|+.   +.+.+..++.++.++|+|||+++
T Consensus        96 -------------------~~~~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~---~~~~~~~~l~~~~~~L~pgG~l~  151 (216)
T 3ofk_A           96 -------------------WSHISWAATDILQF-S-TAELFDLIVVAEVLYYLE---DMTQMRTAIDNMVKMLAPGGHLV  151 (216)
T ss_dssp             -------------------CSSEEEEECCTTTC-C-CSCCEEEEEEESCGGGSS---SHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             -------------------CCCeEEEEcchhhC-C-CCCCccEEEEccHHHhCC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence                               12588999998773 3 568999999999997763   22456789999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       152 ~~~~  155 (216)
T 3ofk_A          152 FGSA  155 (216)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.50  E-value=2e-13  Score=129.08  Aligned_cols=146  Identities=18%  Similarity=0.223  Sum_probs=104.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|+.                                    
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------------------  244 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------------------------------  244 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------------------------------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------------------------------
Confidence            4568999999999999999999999889999999 877655432                                    


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+..+|+.+  +.+..  |+|++..++|+    |.++....+|++++++|+|||.++
T Consensus       245 -------------------~~~v~~~~~d~~~--~~p~~--D~v~~~~vlh~----~~~~~~~~~l~~~~~~L~pgG~l~  297 (368)
T 3reo_A          245 -------------------FSGVEHLGGDMFD--GVPKG--DAIFIKWICHD----WSDEHCLKLLKNCYAALPDHGKVI  297 (368)
T ss_dssp             -------------------CTTEEEEECCTTT--CCCCC--SEEEEESCGGG----BCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             -------------------cCCCEEEecCCCC--CCCCC--CEEEEechhhc----CCHHHHHHHHHHHHHHcCCCCEEE
Confidence                               1358999999876  34433  99999999864    346777899999999999999999


Q ss_pred             EeeCCCchhhh------hhhhhhhh-hcc-ccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEK------NRRVSETT-ATN-FQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~------~~~~~~~~-~~~-~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +....+.....      ........ ... ......+.+++.+ +++++||+.+++...
T Consensus       298 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~-ll~~AGF~~v~~~~~  355 (368)
T 3reo_A          298 VAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQA-LAMASGFRGFKVASC  355 (368)
T ss_dssp             EEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHH-HHHHTTCCEEEEEEE
T ss_pred             EEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHH-HHHHCCCeeeEEEEe
Confidence            96543211100      00111111 111 1223345566766 899999999988765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=9.4e-15  Score=124.82  Aligned_cols=138  Identities=17%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+.++..                                
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   76 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER--------------------------------   76 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------------------------------
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            578899999999999999999988777999999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhhh------h-----------hhcC---
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKW------I-----------HLNW---  197 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~------~-----------~l~~---  197 (290)
                                      .++  ++.+.+.|+.+..+.   ..++||+|+|.....+      +           .+..   
T Consensus        77 ----------------~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (215)
T 4dzr_A           77 ----------------FGA--VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGED  138 (215)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------C
T ss_pred             ----------------hCC--ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCc
Confidence                            122  466777776552111   1278999999533211      0           0000   


Q ss_pred             CchHHHHHHHHHHhhcCCCcE-EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHH--HcCCeeeEeccC
Q 047406          198 GDDGLITLFMRIWKLLRPGGI-FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLD--KIGFRTVEDIGS  271 (290)
Q Consensus       198 ~~~~~~~~l~~~~~~LkpgG~-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~Gf~~v~~~~~  271 (290)
                      +.+....++.++.++|+|||+ +++..+.                      ...+.+.+ ++.  +.||..+++..+
T Consensus       139 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~~~~~~~~-~l~~~~~gf~~~~~~~~  192 (215)
T 4dzr_A          139 GLQFYRRMAALPPYVLARGRAGVFLEVGH----------------------NQADEVAR-LFAPWRERGFRVRKVKD  192 (215)
T ss_dssp             TTHHHHHHHTCCGGGBCSSSEEEEEECTT----------------------SCHHHHHH-HTGGGGGGTEECCEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEEECC----------------------ccHHHHHH-HHHHhhcCCceEEEEEe
Confidence            111127888999999999999 6665431                      11233333 677  889988877665

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.49  E-value=2.8e-13  Score=123.47  Aligned_cols=177  Identities=10%  Similarity=0.074  Sum_probs=103.4

Q ss_pred             CccccccccccccccccCCCCCchhhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeC-CHHHHHHHHH
Q 047406           28 DVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDI-DSNRVADAYW  104 (290)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Di-s~~~l~~a~~  104 (290)
                      ..+..| ...||+..+  ........+.+...  ..++.+|||+|||+|.+++.++.. +..+|+++|+ |+.+++.|+.
T Consensus        46 ~~~i~g-~~~~~g~~~--~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~  121 (281)
T 3bzb_A           46 QVQTTQ-EHPLWTSHV--WSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLES  121 (281)
T ss_dssp             EEECC--------------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHH
T ss_pred             EEEECC-CCCCCCcee--ecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHH
Confidence            455666 456666444  11111112333322  257889999999999999988775 4458999999 8999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC----cceeEeecccccCCC-C---
Q 047406          105 HLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF----DIVSFKQENFVHGRD-S---  176 (290)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~-~---  176 (290)
                      ++.....                                           ...++.    .++.+...++.+... .   
T Consensus       122 n~~~N~~-------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A          122 NIREHTA-------------------------------------------NSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             HHHTTCC-----------------------------------------------------CCCEEEECCTTSCTHHHHHH
T ss_pred             HHHHhhh-------------------------------------------hhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            8732000                                           001111    246676666543211 1   


Q ss_pred             -CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC---C--CcEEEEeeCCCchhhhhhhhhhhhhccccccccCc
Q 047406          177 -PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR---P--GGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP  250 (290)
Q Consensus       177 -~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (290)
                       +.++||+|++..++++.      +....++..+.++|+   |  ||++++...+....                +....
T Consensus       159 ~~~~~fD~Ii~~dvl~~~------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~----------------~~~~~  216 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFH------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH----------------LAERD  216 (281)
T ss_dssp             HSCSSBSEEEEESCCSCG------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC------------------------C
T ss_pred             ccCCCCCEEEEeCcccCh------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc----------------cchhH
Confidence             24789999998887432      567899999999999   9  99887753321100                00123


Q ss_pred             hhHHHHHHHHcC-CeeeEeccCCCC
Q 047406          251 KEFQEILLDKIG-FRTVEDIGSGGL  274 (290)
Q Consensus       251 ~~~~~~ll~~~G-f~~v~~~~~~~~  274 (290)
                      ..+.+ .+++.| |++.++.....+
T Consensus       217 ~~~~~-~l~~~G~f~v~~~~~~~~~  240 (281)
T 3bzb_A          217 LAFFR-LVNADGALIAEPWLSPLQM  240 (281)
T ss_dssp             THHHH-HHHHSTTEEEEEEECCC--
T ss_pred             HHHHH-HHHhcCCEEEEEecccccc
Confidence            45555 678899 998888655333

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.49  E-value=1.9e-13  Score=116.56  Aligned_cols=116  Identities=20%  Similarity=0.229  Sum_probs=89.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      ..+.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|+.++..                            
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~----------------------------   69 (197)
T 3eey_A           18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD----------------------------   69 (197)
T ss_dssp             HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH----------------------------
T ss_pred             hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------
Confidence            345688999999999999999999986 345999999999999999998765                            


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh-----hcCCchHHHHHHHHHHh
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH-----LNWGDDGLITLFMRIWK  211 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~-----l~~~~~~~~~~l~~~~~  211 (290)
                                          .++..++.+.+.|+.+......++||+|++...+  +.     .....+....++.++.+
T Consensus        70 --------------------~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~  127 (197)
T 3eey_A           70 --------------------LNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY--LPSGDHSISTRPETTIQALSKAME  127 (197)
T ss_dssp             --------------------TTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB--CTTSCTTCBCCHHHHHHHHHHHHH
T ss_pred             --------------------cCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc--ccCcccccccCcccHHHHHHHHHH
Confidence                                3344568999999866322445789999987544  11     00122355679999999


Q ss_pred             hcCCCcEEEEee
Q 047406          212 LLRPGGIFVLEP  223 (290)
Q Consensus       212 ~LkpgG~l~i~~  223 (290)
                      +|+|||++++..
T Consensus       128 ~Lk~gG~l~~~~  139 (197)
T 3eey_A          128 LLVTGGIITVVI  139 (197)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hCcCCCEEEEEE
Confidence            999999999864

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.49  E-value=2.8e-13  Score=128.06  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=104.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|+.                                    
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------------------  242 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------------------------------  242 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------------------------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------------------------------
Confidence            4568999999999999999999999889999999 777655432                                    


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.|...|+.+  +.|.+  |+|++..++|+    |++++...+|++++++|+|||.++
T Consensus       243 -------------------~~~v~~~~~D~~~--~~p~~--D~v~~~~vlh~----~~d~~~~~~L~~~~~~L~pgG~l~  295 (364)
T 3p9c_A          243 -------------------FPGVTHVGGDMFK--EVPSG--DTILMKWILHD----WSDQHCATLLKNCYDALPAHGKVV  295 (364)
T ss_dssp             -------------------CTTEEEEECCTTT--CCCCC--SEEEEESCGGG----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             -------------------cCCeEEEeCCcCC--CCCCC--CEEEehHHhcc----CCHHHHHHHHHHHHHHcCCCCEEE
Confidence                               1358999999876  34433  99999999863    456788899999999999999999


Q ss_pred             EeeCCCchhh------hhhhhhhh-hh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYE------KNRRVSET-TA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~------~~~~~~~~-~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +....+....      ........ .. ........+.+++.+ +++++||+.+++...
T Consensus       296 i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~-ll~~AGF~~v~~~~~  353 (364)
T 3p9c_A          296 LVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA-LARGAGFTGVKSTYI  353 (364)
T ss_dssp             EEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH-HHHHTTCCEEEEEEE
T ss_pred             EEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHH-HHHHCCCceEEEEEc
Confidence            9654321110      00011111 11 112233345566766 899999999988765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=5.6e-13  Score=116.80  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..++...+..+|+|+|+|+.+++.+....+.                                
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------------------------------  103 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------------------------------  103 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------------------------------
Confidence            578899999999999999999887655899999999988776654332                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      .   .++.+...|..+.   .+. .++||+|+|.. .       ..+....++.++.++|+|||
T Consensus       104 ----------------~---~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~-~-------~~~~~~~~l~~~~r~LkpgG  155 (210)
T 1nt2_A          104 ----------------R---NNIIPLLFDASKPWKYSGI-VEKVDLIYQDI-A-------QKNQIEILKANAEFFLKEKG  155 (210)
T ss_dssp             ----------------C---SSEEEECSCTTCGGGTTTT-CCCEEEEEECC-C-------STTHHHHHHHHHHHHEEEEE
T ss_pred             ----------------C---CCeEEEEcCCCCchhhccc-ccceeEEEEec-c-------ChhHHHHHHHHHHHHhCCCC
Confidence                            1   1366666776542   122 37899999862 1       11344566899999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHH-HH--HHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQ-EI--LLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--ll~~~Gf~~v~~~~~  271 (290)
                      +|++....       .         .......+++.. +.  .++++ |++++....
T Consensus       156 ~l~i~~~~-------~---------~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~  195 (210)
T 1nt2_A          156 EVVIMVKA-------R---------SIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL  195 (210)
T ss_dssp             EEEEEEEH-------H---------HHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             EEEEEEec-------C---------CccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence            99996321       0         001112334432 11  37788 999988776

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.48  E-value=3.4e-13  Score=115.40  Aligned_cols=111  Identities=15%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ....++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|+.++...                            
T Consensus        19 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------   69 (209)
T 2p8j_A           19 NESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSREN----------------------------   69 (209)
T ss_dssp             HHSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHH----------------------------
T ss_pred             hccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhc----------------------------
Confidence            34467899999999999985554444 3459999999999999999876541                            


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                          +  .++.+.+.|+.+ .+.+.++||+|+|..+++|+.    .++...++.++.++|+|||
T Consensus        70 --------------------~--~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG  122 (209)
T 2p8j_A           70 --------------------N--FKLNISKGDIRK-LPFKDESMSFVYSYGTIFHMR----KNDVKEAIDEIKRVLKPGG  122 (209)
T ss_dssp             --------------------T--CCCCEEECCTTS-CCSCTTCEEEEEECSCGGGSC----HHHHHHHHHHHHHHEEEEE
T ss_pred             --------------------C--CceEEEECchhh-CCCCCCceeEEEEcChHHhCC----HHHHHHHHHHHHHHcCCCc
Confidence                                1  247788888866 455678999999999886552    4678999999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .+++...
T Consensus       123 ~l~~~~~  129 (209)
T 2p8j_A          123 LACINFL  129 (209)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.47  E-value=2e-13  Score=116.17  Aligned_cols=109  Identities=15%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+.++..                                
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   89 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEA--------------------------------   89 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            57899999999999999987764 556899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~LkpgG  217 (290)
                                      .++ .++.+.+.|+.+..+ .+.++||+|++....++.     .+....++..+.+  +|+|||
T Consensus        90 ----------------~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~-----~~~~~~~l~~~~~~~~L~pgG  147 (189)
T 3p9n_A           90 ----------------LGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD-----SADVDAILAALGTNGWTREGT  147 (189)
T ss_dssp             ----------------HTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSC-----HHHHHHHHHHHHHSSSCCTTC
T ss_pred             ----------------cCC-CceEEEEccHHHHHhhccCCCccEEEECCCCCcc-----hhhHHHHHHHHHhcCccCCCe
Confidence                            233 468899999876321 235789999998765432     2567899999999  999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      +++++..
T Consensus       148 ~l~~~~~  154 (189)
T 3p9n_A          148 VAVVERA  154 (189)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.47  E-value=2.1e-13  Score=118.25  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=79.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.+|..+|+|+|+|+.+++.+.+..+...                              
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~------------------------------   75 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP------------------------------   75 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCG------------------------------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhh------------------------------
Confidence            47889999999999999999999888899999999998886544322100                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc---hhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL---SVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~---~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                    ...+ ..++.+.+.|+.+ ++.+.+. |.|++.   ..++.-|+    .+...++.++.++|+|||
T Consensus        76 --------------~~~~-~~~v~~~~~d~~~-l~~~~~~-d~v~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG  134 (218)
T 3mq2_A           76 --------------AKGG-LPNLLYLWATAER-LPPLSGV-GELHVLMPWGSLLRGVL----GSSPEMLRGMAAVCRPGA  134 (218)
T ss_dssp             --------------GGTC-CTTEEEEECCSTT-CCSCCCE-EEEEEESCCHHHHHHHH----TSSSHHHHHHHHTEEEEE
T ss_pred             --------------hhcC-CCceEEEecchhh-CCCCCCC-CEEEEEccchhhhhhhh----ccHHHHHHHHHHHcCCCc
Confidence                          0012 2358999999877 4555444 666632   22210011    233789999999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      .+++..
T Consensus       135 ~l~~~~  140 (218)
T 3mq2_A          135 SFLVAL  140 (218)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999954

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.46  E-value=3.3e-13  Score=123.04  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=85.6

Q ss_pred             CCcEEEecCCC---ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           63 GKDCLDIGCNS---GIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        63 ~~~vLDiGcG~---G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+|||||||+   |.++..+++..+..+|+++|+|+.+++.|++.+..                               
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------------------------------  126 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------------------------------  126 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------------------------------
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------------------------------
Confidence            47999999999   98877777777778999999999999999886421                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCC----------CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR----------DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                                          ..++.+.+.|+.+..          ..+..+||+|++..++||+.    ++....++.++
T Consensus       127 --------------------~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~----d~~~~~~l~~~  182 (274)
T 2qe6_A          127 --------------------DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLS----PDVVDRVVGAY  182 (274)
T ss_dssp             --------------------CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSC----TTTHHHHHHHH
T ss_pred             --------------------CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCC----cHHHHHHHHHH
Confidence                                135888899886410          01224899999999998774    34688999999


Q ss_pred             HhhcCCCcEEEEeeC
Q 047406          210 WKLLRPGGIFVLEPQ  224 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~  224 (290)
                      .++|+|||+|++...
T Consensus       183 ~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          183 RDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHHSCTTCEEEEEEE
T ss_pred             HHhCCCCcEEEEEEe
Confidence            999999999999764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=2.2e-13  Score=120.41  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..++...+..+|+++|+|+.+++.|++++..                                
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------  117 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLAT--------------------------------  117 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            578999999999999999999976778999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++.+++.+...|+.+.++ ...++||+|++....         .....++..+.++|+|||++
T Consensus       118 ----------------~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~---------~~~~~~l~~~~~~LkpgG~l  172 (232)
T 3ntv_A          118 ----------------YHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAK---------AQSKKFFEIYTPLLKHQGLV  172 (232)
T ss_dssp             ----------------TTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETTS---------SSHHHHHHHHGGGEEEEEEE
T ss_pred             ----------------cCCCCcEEEEECCHHHHHHhhccCCccEEEEcCcH---------HHHHHHHHHHHHhcCCCeEE
Confidence                            3444579999999877544 335789999975432         45678999999999999999


Q ss_pred             EEeeCCC
Q 047406          220 VLEPQPW  226 (290)
Q Consensus       220 ~i~~~~~  226 (290)
                      ++....|
T Consensus       173 v~d~~~~  179 (232)
T 3ntv_A          173 ITDNVLY  179 (232)
T ss_dssp             EEECTTG
T ss_pred             EEeeCCc
Confidence            9965544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.46  E-value=4.5e-13  Score=124.41  Aligned_cols=104  Identities=10%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||||||+|.++..++.+.+..+|+|+|+|+.+++.|++++..                              
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~------------------------------  168 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG------------------------------  168 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh------------------------------
Confidence            45789999999999997765544445567999999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ .++.|.++|..+ +  ++++||+|++....         ++...++.++.+.|+|||+
T Consensus       169 ------------------~gl-~~v~~v~gDa~~-l--~d~~FDvV~~~a~~---------~d~~~~l~el~r~LkPGG~  217 (298)
T 3fpf_A          169 ------------------LGV-DGVNVITGDETV-I--DGLEFDVLMVAALA---------EPKRRVFRNIHRYVDTETR  217 (298)
T ss_dssp             ------------------HTC-CSEEEEESCGGG-G--GGCCCSEEEECTTC---------SCHHHHHHHHHHHCCTTCE
T ss_pred             ------------------cCC-CCeEEEECchhh-C--CCCCcCEEEECCCc---------cCHHHHHHHHHHHcCCCcE
Confidence                              334 579999999877 3  36889999985442         5678999999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      |++..
T Consensus       218 Lvv~~  222 (298)
T 3fpf_A          218 IIYRT  222 (298)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99964

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.45  E-value=7.5e-13  Score=110.95  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=87.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+++++|+|+.+++.++.++..                                
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~--------------------------------   96 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKL--------------------------------   96 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            37789999999999999998887  56999999999999999988765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++.. .+.+...|+.+.  .+.++||+|++...++|     +.+....++.++.++|+|||.+
T Consensus        97 ----------------~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l  153 (194)
T 1dus_A           97 ----------------NNLDNYDIRVVHSDLYEN--VKDRKYNKIITNPPIRA-----GKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             ----------------TTCTTSCEEEEECSTTTT--CTTSCEEEEEECCCSTT-----CHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------cCCCccceEEEECchhcc--cccCCceEEEECCCccc-----chhHHHHHHHHHHHHcCCCCEE
Confidence                            22222 388899998763  23578999999877643     2356789999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       154 ~~~~~  158 (194)
T 1dus_A          154 WVVIQ  158 (194)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=6.6e-13  Score=119.76  Aligned_cols=119  Identities=8%  Similarity=0.055  Sum_probs=87.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++++.+..+|+|+|+++.+++.|+.++....                              
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~------------------------------   84 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD------------------------------   84 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG------------------------------
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh------------------------------
Confidence            46789999999999999999999877899999999999999998753200                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCC------CCCCCceeEEEEchhhhhh------------hhcCCchHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR------DSPEKYYDAILCLSVTKWI------------HLNWGDDGL  202 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~fD~I~~~~vl~~~------------~l~~~~~~~  202 (290)
                                     ..++.+++.+.+.|+.+..      ..+.++||+|+|+....+.            ........+
T Consensus        85 ---------------~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~  149 (260)
T 2ozv_A           85 ---------------NAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLF  149 (260)
T ss_dssp             ---------------GTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCH
T ss_pred             ---------------hCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCH
Confidence                           0233446889999987631      2345789999997332111            001122347


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeC
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ..++..+.++|+|||.+++..+
T Consensus       150 ~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          150 EDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEEEEc
Confidence            8899999999999999999765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.45  E-value=2.1e-13  Score=120.27  Aligned_cols=114  Identities=17%  Similarity=0.215  Sum_probs=87.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||||||+|.++..+|+..+...|+|+|+|+.+++.|+.++..                                 
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~---------------------------------   80 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE---------------------------------   80 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH---------------------------------
Confidence            67899999999999999999998888999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCc--hHHHHHHHHHHhhcCCCc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGD--DGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~--~~~~~~l~~~~~~LkpgG  217 (290)
                                     .++. ++.+.+.|..+.++  .++++||.|++.+...|.......  -....++..+.++|+|||
T Consensus        81 ---------------~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG  144 (218)
T 3dxy_A           81 ---------------EGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG  144 (218)
T ss_dssp             ---------------TTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEE
T ss_pred             ---------------hCCC-cEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCc
Confidence                           2332 48899999766322  456899999997554433210000  001258999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++.+.
T Consensus       145 ~l~i~td  151 (218)
T 3dxy_A          145 VFHMATD  151 (218)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9999764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.44  E-value=8.2e-13  Score=115.38  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=85.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+++.++ ..+|+++|+|+.+++.|++++..                               
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  105 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF-------------------------------  105 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH-------------------------------
Confidence            4778999999999999999998764 56999999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCC-----CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPE-----KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-----~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++.+++.+...|+.+.++...     ++||+|++....++.      .....++..+ ++|+
T Consensus       106 -----------------~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~------~~~~~~~~~~-~~Lk  161 (221)
T 3u81_A          106 -----------------AGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY------LPDTLLLEKC-GLLR  161 (221)
T ss_dssp             -----------------HTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGH------HHHHHHHHHT-TCCC
T ss_pred             -----------------cCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccc------hHHHHHHHhc-cccC
Confidence                             3344468899998755322222     689999997765433      2344667777 9999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||++++....|
T Consensus       162 pgG~lv~~~~~~  173 (221)
T 3u81_A          162 KGTVLLADNVIV  173 (221)
T ss_dssp             TTCEEEESCCCC
T ss_pred             CCeEEEEeCCCC
Confidence            999999965543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.44  E-value=6.6e-13  Score=124.24  Aligned_cols=147  Identities=12%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|..+..+++.+|..+++++|+ +.+++.|+.                                   
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------------------  229 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----------------------------------  229 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------------------------------
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----------------------------------
Confidence            45678999999999999999999988889999999 888765532                                   


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC---C
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP---G  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp---g  216 (290)
                                         . .++.+...|+.+.  .+  .||+|++.+++|++    .++....+++++.++|+|   |
T Consensus       230 -------------------~-~~v~~~~~d~~~~--~p--~~D~v~~~~~lh~~----~d~~~~~~l~~~~~~L~p~~~g  281 (352)
T 1fp2_A          230 -------------------S-NNLTYVGGDMFTS--IP--NADAVLLKYILHNW----TDKDCLRILKKCKEAVTNDGKR  281 (352)
T ss_dssp             -------------------B-TTEEEEECCTTTC--CC--CCSEEEEESCGGGS----CHHHHHHHHHHHHHHHSGGGCC
T ss_pred             -------------------C-CCcEEEeccccCC--CC--CccEEEeehhhccC----CHHHHHHHHHHHHHhCCCCCCC
Confidence                               1 2388999998663  33  39999999999743    456667999999999999   9


Q ss_pred             cEEEEeeCCCchhh------hhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYE------KNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |.+++....+....      ..................+.+++.+ +++++||+.+++...
T Consensus       282 G~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~-ll~~aGf~~~~~~~~  341 (352)
T 1fp2_A          282 GKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKK-LFIEAGFQHYKISPL  341 (352)
T ss_dssp             CEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHH-HHHHTTCCEEEEEEE
T ss_pred             cEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHH-HHHHCCCCeeEEEec
Confidence            99998654321111      0000111100001122345566666 899999999987664

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.44  E-value=9e-13  Score=110.28  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=84.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||+|||+|.++..+++..  .+|+++|+|+.+++.++.++..                               
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~-------------------------------   77 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQR-------------------------------   77 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            3578899999999999999998875  6999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+..+. .+.||+|++..++         .....++..+.++|+|||.+
T Consensus        78 -----------------~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~---------~~~~~~l~~~~~~l~~gG~l  130 (192)
T 1l3i_A           78 -----------------HGLGDNVTLMEGDAPEALCK-IPDIDIAVVGGSG---------GELQEILRIIKDKLKPGGRI  130 (192)
T ss_dssp             -----------------TTCCTTEEEEESCHHHHHTT-SCCEEEEEESCCT---------TCHHHHHHHHHHTEEEEEEE
T ss_pred             -----------------cCCCcceEEEecCHHHhccc-CCCCCEEEECCch---------HHHHHHHHHHHHhcCCCcEE
Confidence                             23334588888887652221 2589999998765         24578999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       131 ~~~~~  135 (192)
T 1l3i_A          131 IVTAI  135 (192)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.43  E-value=5.9e-13  Score=119.01  Aligned_cols=110  Identities=17%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+++.++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------  110 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL-------------------------------  110 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5789999999999999999999887 67999999999999999998775                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       .++..++.+...|+.+.++..  .++||+|++....         .....++.++.++|+|||
T Consensus       111 -----------------~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~---------~~~~~~l~~~~~~LkpGG  164 (248)
T 3tfw_A          111 -----------------AGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK---------PNNPHYLRWALRYSRPGT  164 (248)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG---------GGHHHHHHHHHHTCCTTC
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch---------HHHHHHHHHHHHhcCCCe
Confidence                             344556899999986532222  3489999985432         456778999999999999


Q ss_pred             EEEEeeCCCc
Q 047406          218 IFVLEPQPWV  227 (290)
Q Consensus       218 ~l~i~~~~~~  227 (290)
                      ++++....|.
T Consensus       165 ~lv~~~~~~~  174 (248)
T 3tfw_A          165 LIIGDNVVRD  174 (248)
T ss_dssp             EEEEECCSGG
T ss_pred             EEEEeCCCcC
Confidence            9999765443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.43  E-value=1.4e-13  Score=121.94  Aligned_cols=156  Identities=15%  Similarity=0.050  Sum_probs=89.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCC-HHHHHHH---HHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDID-SNRVADA---YWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.+++.|   ++++..                            
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~----------------------------   74 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK----------------------------   74 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG----------------------------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH----------------------------
Confidence            57889999999999999999987777899999999 6666665   432211                            


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                          .++ .++.+.+.|..+. +.. .+.+|.|+++....+.+.. .......++.++.++|+|
T Consensus        75 --------------------~~~-~~v~~~~~d~~~l-~~~~~d~v~~i~~~~~~~~~~~~-~~~~~~~~l~~~~r~Lkp  131 (225)
T 3p2e_A           75 --------------------GGL-SNVVFVIAAAESL-PFELKNIADSISILFPWGTLLEY-VIKPNRDILSNVADLAKK  131 (225)
T ss_dssp             --------------------TCC-SSEEEECCBTTBC-CGGGTTCEEEEEEESCCHHHHHH-HHTTCHHHHHHHHTTEEE
T ss_pred             --------------------cCC-CCeEEEEcCHHHh-hhhccCeEEEEEEeCCCcHHhhh-hhcchHHHHHHHHHhcCC
Confidence                                222 2588889888663 321 1445555554322111000 001124689999999999


Q ss_pred             CcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          216 GGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       216 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ||.+++.......+...... ......+..-.+.++++.+ +++++||+++...
T Consensus       132 GG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~el~~-~l~~aGf~v~~~~  183 (225)
T 3p2e_A          132 EAHFEFVTTYSDSYEEAEIK-KRGLPLLSKAYFLSEQYKA-ELSNSGFRIDDVK  183 (225)
T ss_dssp             EEEEEEEECCCC---------------CCHHHHHSHHHHH-HHHHHTCEEEEEE
T ss_pred             CcEEEEEEeccccchhchhh-hcCCCCCChhhcchHHHHH-HHHHcCCCeeeee
Confidence            99999943222221110000 0000001111112223544 7899999987654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.43  E-value=1.5e-12  Score=114.49  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+.++..                                
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------  120 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------------------------------  120 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------------------------------
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------------------------------
Confidence            567899999999999999999987656999999999999999876432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      .   .++.+...|+.+.   .+.+ +.||+|++.     +  . .......++.++.++|+|||
T Consensus       121 ----------------~---~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~-----~--~-~~~~~~~~l~~~~~~LkpgG  172 (230)
T 1fbn_A          121 ----------------R---ENIIPILGDANKPQEYANIV-EKVDVIYED-----V--A-QPNQAEILIKNAKWFLKKGG  172 (230)
T ss_dssp             ----------------C---TTEEEEECCTTCGGGGTTTS-CCEEEEEEC-----C--C-STTHHHHHHHHHHHHEEEEE
T ss_pred             ----------------C---CCeEEEECCCCCcccccccC-ccEEEEEEe-----c--C-ChhHHHHHHHHHHHhCCCCc
Confidence                            1   3588888887651   2333 689999942     1  0 12334677999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++++...+ .+...    .      .....+..+++ . ++.++||+.++....
T Consensus       173 ~l~i~~~~-~~~~~----~------~~~~~~~~~~l-~-~l~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          173 YGMIAIKA-RSIDV----T------KDPKEIFKEQK-E-ILEAGGFKIVDEVDI  213 (230)
T ss_dssp             EEEEEEEG-GGTCS----S------SCHHHHHHHHH-H-HHHHHTEEEEEEEEC
T ss_pred             EEEEEEec-CCCCC----C------CCHHHhhHHHH-H-HHHHCCCEEEEEEcc
Confidence            99995210 00000    0      00001122333 4 678899999887654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.43  E-value=2.2e-12  Score=115.88  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||+|||+|..+..+|... +...|+|+|+++.+++.+++.+..                              
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~------------------------------  124 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD------------------------------  124 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT------------------------------
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh------------------------------
Confidence            4799999999999999999999875 456899999999999998775432                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeeccccc--CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVH--GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           ..++.....|..+  ..+...+.+|+|++....+        ++...++.++.+.||||
T Consensus       125 ---------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~--------~~~~~~l~~~~r~LKpG  175 (233)
T 4df3_A          125 ---------------------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP--------EQAAIVVRNARFFLRDG  175 (233)
T ss_dssp             ---------------------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT--------THHHHHHHHHHHHEEEE
T ss_pred             ---------------------hcCeeEEEEeccCccccccccceEEEEEEeccCC--------hhHHHHHHHHHHhccCC
Confidence                                 1246666666544  2344567899999754331        45678999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |.+++....... ...    .....      .. .+..+ .|+++||+.++.+.-
T Consensus       176 G~lvI~ik~r~~-d~~----~p~~~------~~-~~ev~-~L~~~GF~l~e~i~L  217 (233)
T 4df3_A          176 GYMLMAIKARSI-DVT----TEPSE------VY-KREIK-TLMDGGLEIKDVVHL  217 (233)
T ss_dssp             EEEEEEEECCHH-HHH----TCCCH------HH-HHHHH-HHHHTTCCEEEEEEC
T ss_pred             CEEEEEEecccC-CCC----CChHH------HH-HHHHH-HHHHCCCEEEEEEcc
Confidence            999996421110 000    00000      00 12223 578899999988765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.42  E-value=1.5e-12  Score=114.46  Aligned_cols=140  Identities=15%  Similarity=0.135  Sum_probs=97.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.+..+...                              
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~------------------------------  124 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK------------------------------  124 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc------------------------------
Confidence            3578899999999999999999986 456999999999998888776544                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                        .   .++.+...|+.+.  ++...++||+|+|...        ..+....++.++.++|+||
T Consensus       125 ------------------~---~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--------~~~~~~~~~~~~~~~Lkpg  175 (233)
T 2ipx_A          125 ------------------R---TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--------QPDQTRIVALNAHTFLRNG  175 (233)
T ss_dssp             ------------------C---TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--------CTTHHHHHHHHHHHHEEEE
T ss_pred             ------------------c---CCeEEEEcccCChhhhcccCCcEEEEEEcCC--------CccHHHHHHHHHHHHcCCC
Confidence                              1   3578888888662  2334578999998543        1234466788999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |++++...+.     .....      .........+ . .+++++||++++....
T Consensus       176 G~l~i~~~~~-----~~~~~------~~~~~~~~~~-~-~~l~~~Gf~~~~~~~~  217 (233)
T 2ipx_A          176 GHFVISIKAN-----CIDST------ASAEAVFASE-V-KKMQQENMKPQEQLTL  217 (233)
T ss_dssp             EEEEEEEEHH-----HHCSS------SCHHHHHHHH-H-HTTGGGTEEEEEEEEC
T ss_pred             eEEEEEEccc-----ccccC------CCHHHHHHHH-H-HHHHHCCCceEEEEec
Confidence            9999964310     00000      0000011122 3 3788999999886554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.42  E-value=1e-12  Score=116.47  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=98.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||+|||+|.++..++.. .+..+|+++|+|+.+++.|++++..                              
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~------------------------------  140 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW------------------------------  140 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH------------------------------
Confidence            357899999999999999999998 5567999999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++.+.+.+...|+.+.  .+.+.||+|++..           .....++.++.++|+|||.
T Consensus       141 ------------------~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~~-----------~~~~~~l~~~~~~L~~gG~  189 (255)
T 3mb5_A          141 ------------------AGFDDRVTIKLKDIYEG--IEEENVDHVILDL-----------PQPERVVEHAAKALKPGGF  189 (255)
T ss_dssp             ------------------HTCTTTEEEECSCGGGC--CCCCSEEEEEECS-----------SCGGGGHHHHHHHEEEEEE
T ss_pred             ------------------cCCCCceEEEECchhhc--cCCCCcCEEEECC-----------CCHHHHHHHHHHHcCCCCE
Confidence                              23444589999998763  4557899999832           2235678999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcC--CeeeEeccC
Q 047406          219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG--FRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G--f~~v~~~~~  271 (290)
                      +++..+.+..                     ..+..+ .++++|  |..++.+..
T Consensus       190 l~~~~~~~~~---------------------~~~~~~-~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          190 FVAYTPCSNQ---------------------VMRLHE-KLREFKDYFMKPRTINV  222 (255)
T ss_dssp             EEEEESSHHH---------------------HHHHHH-HHHHTGGGBSCCEEECC
T ss_pred             EEEEECCHHH---------------------HHHHHH-HHHHcCCCccccEEEEE
Confidence            9996542110                     122333 678899  987776554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.42  E-value=3.7e-13  Score=112.83  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=83.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+.++..                                
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   76 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIM--------------------------------   76 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHT--------------------------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            57889999999999999998876 556999999999999999998764                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH--hhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW--KLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~--~~LkpgG~  218 (290)
                                      .++..++.+...|+.+..+...+.||+|++....++       .....++..+.  ++|+|||+
T Consensus        77 ----------------~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~-------~~~~~~~~~l~~~~~L~~gG~  133 (177)
T 2esr_A           77 ----------------TKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAK-------ETIVATIEALAAKNLLSEQVM  133 (177)
T ss_dssp             ----------------TTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHH-------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----------------cCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCCc-------chHHHHHHHHHhCCCcCCCcE
Confidence                            334446888898886632223467999999765421       23456666666  99999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++...
T Consensus       134 l~~~~~  139 (177)
T 2esr_A          134 VVCETD  139 (177)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.42  E-value=8.8e-13  Score=111.26  Aligned_cols=125  Identities=17%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..   +|+|+|+|+.+++.      .                                
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------~--------------------------------   60 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------H--------------------------------   60 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------C--------------------------------
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------c--------------------------------
Confidence            567899999999999999998874   99999999998876      1                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhc---CCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN---WGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~---~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                          .++.+.+.|+.+.  .+.++||+|+|+...+|..-.   .+..+...++.++.+.| |||
T Consensus        61 --------------------~~~~~~~~d~~~~--~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG  117 (170)
T 3q87_B           61 --------------------RGGNLVRADLLCS--INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVG  117 (170)
T ss_dssp             --------------------SSSCEEECSTTTT--BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSS
T ss_pred             --------------------cCCeEEECChhhh--cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCC
Confidence                                1477888998763  344789999998776543210   01223456788888888 999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .+++.....                     ...+++.+ +++++||+.+.+...
T Consensus       118 ~l~~~~~~~---------------------~~~~~l~~-~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          118 MLYLLVIEA---------------------NRPKEVLA-RLEERGYGTRILKVR  149 (170)
T ss_dssp             EEEEEEEGG---------------------GCHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             EEEEEEecC---------------------CCHHHHHH-HHHHCCCcEEEEEee
Confidence            999964311                     12233444 789999998887665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.42  E-value=5.4e-13  Score=117.15  Aligned_cols=110  Identities=18%  Similarity=0.260  Sum_probs=89.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.++..+|+++|+|+.+++.|+.++..                                
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------  100 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKA--------------------------------  100 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            578899999999999999999988777999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                      .++..++.+...|+.+..+..  .++||+|++....         .....++..+.++|+|||+
T Consensus       101 ----------------~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~---------~~~~~~l~~~~~~L~pgG~  155 (233)
T 2gpy_A          101 ----------------LGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAK---------GQYRRFFDMYSPMVRPGGL  155 (233)
T ss_dssp             ----------------TTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG---------SCHHHHHHHHGGGEEEEEE
T ss_pred             ----------------cCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCH---------HHHHHHHHHHHHHcCCCeE
Confidence                            333345888888887632322  4689999986654         3567899999999999999


Q ss_pred             EEEeeCCCc
Q 047406          219 FVLEPQPWV  227 (290)
Q Consensus       219 l~i~~~~~~  227 (290)
                      +++....|.
T Consensus       156 lv~~~~~~~  164 (233)
T 2gpy_A          156 ILSDNVLFR  164 (233)
T ss_dssp             EEEETTTC-
T ss_pred             EEEEcCCcC
Confidence            999754443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.42  E-value=5e-13  Score=126.08  Aligned_cols=145  Identities=16%  Similarity=0.144  Sum_probs=101.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|..+..+++.++..+++++|+ +.+++.|+.                                    
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------------------------  250 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------------------------------------  250 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------------------------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------------------------------------
Confidence            4578999999999999999999998888999999 887765432                                    


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                         ..++.+...|+.+  +.+.  ||+|++..++|++    .++....+++++.++|+|||.++
T Consensus       251 -------------------~~~v~~~~~d~~~--~~~~--~D~v~~~~~lh~~----~d~~~~~~l~~~~~~L~pgG~l~  303 (372)
T 1fp1_D          251 -------------------LSGIEHVGGDMFA--SVPQ--GDAMILKAVCHNW----SDEKCIEFLSNCHKALSPNGKVI  303 (372)
T ss_dssp             -------------------CTTEEEEECCTTT--CCCC--EEEEEEESSGGGS----CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------------cCCCEEEeCCccc--CCCC--CCEEEEecccccC----CHHHHHHHHHHHHHhcCCCCEEE
Confidence                               1248899999876  3332  9999999999744    45566799999999999999999


Q ss_pred             EeeCCCch-----hhh-hhhhhhh-hhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          221 LEPQPWVS-----YEK-NRRVSET-TATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       221 i~~~~~~~-----~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +....+..     ... ....... .........+..+++.+ +++++||+++++..
T Consensus       304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~-ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          304 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK-LSKLSGFSKFQVAC  359 (372)
T ss_dssp             EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH-HHHHTTCSEEEEEE
T ss_pred             EEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHH-HHHHCCCceEEEEE
Confidence            85321110     000 0011111 00011122345566666 89999999998876

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.41  E-value=3.7e-13  Score=117.01  Aligned_cols=110  Identities=20%  Similarity=0.216  Sum_probs=87.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..++..++ ..+|+++|+|+.+++.|++++..                               
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  111 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK-------------------------------  111 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            5778999999999999999999876 67999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++...+.+...|..+..+..     .++||+|++...         ......++..+.++|+
T Consensus       112 -----------------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---------~~~~~~~l~~~~~~L~  165 (225)
T 3tr6_A          112 -----------------AGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---------KANTDLYYEESLKLLR  165 (225)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---------GGGHHHHHHHHHHHEE
T ss_pred             -----------------CCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---------HHHHHHHHHHHHHhcC
Confidence                             334456888888875532211     168999997543         2456789999999999


Q ss_pred             CCcEEEEeeCCCc
Q 047406          215 PGGIFVLEPQPWV  227 (290)
Q Consensus       215 pgG~l~i~~~~~~  227 (290)
                      |||++++....|.
T Consensus       166 pgG~lv~~~~~~~  178 (225)
T 3tr6_A          166 EGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEEEEEECSSGG
T ss_pred             CCcEEEEeCCCcC
Confidence            9999999765443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.41  E-value=6.7e-13  Score=126.89  Aligned_cols=141  Identities=20%  Similarity=0.263  Sum_probs=103.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|+.++..                                 
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~---------------------------------  277 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEA---------------------------------  277 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            6789999999999999999886  45999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++  .+.+...|+.+. ..+.++||+|+|+..+++.. ....+....++.++.++|+|||++++
T Consensus       278 ---------------~~~--~v~~~~~D~~~~-~~~~~~fD~Ii~npp~~~~~-~~~~~~~~~~l~~~~~~LkpGG~l~i  338 (381)
T 3dmg_A          278 ---------------NAL--KAQALHSDVDEA-LTEEARFDIIVTNPPFHVGG-AVILDVAQAFVNVAAARLRPGGVFFL  338 (381)
T ss_dssp             ---------------TTC--CCEEEECSTTTT-SCTTCCEEEEEECCCCCTTC-SSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cCC--CeEEEEcchhhc-cccCCCeEEEEECCchhhcc-cccHHHHHHHHHHHHHhcCcCcEEEE
Confidence                           222  278889998774 33357999999988876421 11246778999999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +..+...+..      .+...|..+.       . + ++.||++++....
T Consensus       339 v~n~~l~~~~------~l~~~f~~v~-------~-l-~~~gF~Vl~a~~~  373 (381)
T 3dmg_A          339 VSNPFLKYEP------LLEEKFGAFQ-------T-L-KVAEYKVLFAEKR  373 (381)
T ss_dssp             EECTTSCHHH------HHHHHHSCCE-------E-E-EESSSEEEEEECC
T ss_pred             EEcCCCChHH------HHHHhhccEE-------E-E-eCCCEEEEEEEEe
Confidence            8764433322      1111121110       1 2 5688988877665

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.41  E-value=1.7e-12  Score=118.17  Aligned_cols=107  Identities=15%  Similarity=0.076  Sum_probs=86.0

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +...+.++.+|||+|||+|.+++.+|+..+. +|+|+|+|+.+++.|+.++..                           
T Consensus       119 l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~---------------------------  170 (278)
T 2frn_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHL---------------------------  170 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHhCCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHH---------------------------
Confidence            3444567999999999999999999987544 799999999999999998775                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                           +++.+.+.+.+.|+.+...  .+.||+|++....          ....++..+.++|+|
T Consensus       171 ---------------------n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~----------~~~~~l~~~~~~Lkp  217 (278)
T 2frn_A          171 ---------------------NKVEDRMSAYNMDNRDFPG--ENIADRILMGYVV----------RTHEFIPKALSIAKD  217 (278)
T ss_dssp             ---------------------TTCTTTEEEECSCTTTCCC--CSCEEEEEECCCS----------SGGGGHHHHHHHEEE
T ss_pred             ---------------------cCCCceEEEEECCHHHhcc--cCCccEEEECCch----------hHHHHHHHHHHHCCC
Confidence                                 4455568899999977432  6789999985332          225678899999999


Q ss_pred             CcEEEEee
Q 047406          216 GGIFVLEP  223 (290)
Q Consensus       216 gG~l~i~~  223 (290)
                      ||++++..
T Consensus       218 gG~l~~~~  225 (278)
T 2frn_A          218 GAIIHYHN  225 (278)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999953

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.41  E-value=3.2e-12  Score=119.89  Aligned_cols=116  Identities=20%  Similarity=0.087  Sum_probs=88.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+.++.+|||+|||+|.+++.++... +...|+|+|+|+.+++.|+.++..                             
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~-----------------------------  250 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA-----------------------------  250 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH-----------------------------
Confidence            45678999999999999999999987 567999999999999999999876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhc--CCchHHHHHHHHHHhhcCC
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN--WGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~--~~~~~~~~~l~~~~~~Lkp  215 (290)
                                         .++. .+.+.+.|+.+ ++.+...||+|+|+....+....  ...+....++..+.++|+|
T Consensus       251 -------------------~g~~-~i~~~~~D~~~-~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp  309 (354)
T 3tma_A          251 -------------------SGLS-WIRFLRADARH-LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP  309 (354)
T ss_dssp             -------------------TTCT-TCEEEECCGGG-GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT
T ss_pred             -------------------cCCC-ceEEEeCChhh-CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC
Confidence                               3343 68999999877 34445679999995432110000  0012236889999999999


Q ss_pred             CcEEEEeeC
Q 047406          216 GGIFVLEPQ  224 (290)
Q Consensus       216 gG~l~i~~~  224 (290)
                      ||.+++..+
T Consensus       310 gG~l~i~t~  318 (354)
T 3tma_A          310 GGRVALLTL  318 (354)
T ss_dssp             TCEEEEEES
T ss_pred             CcEEEEEeC
Confidence            999999643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.40  E-value=3e-13  Score=118.45  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=86.0

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.+..+|||+|||+|.++..++...|..+|+++|+|+.+++.++.++..                              
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~------------------------------   95 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK------------------------------   95 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh------------------------------
Confidence            35678999999999999999998888888999999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+...++.+  .|....  .+.++||+|+...++|.+      ++.+..+.++.+.|+|||+
T Consensus        96 ------------------~g~~~~v~~--~d~~~~--~~~~~~DvVLa~k~LHlL------~~~~~al~~v~~~L~pggv  147 (200)
T 3fzg_A           96 ------------------LKTTIKYRF--LNKESD--VYKGTYDVVFLLKMLPVL------KQQDVNILDFLQLFHTQNF  147 (200)
T ss_dssp             ------------------SCCSSEEEE--ECCHHH--HTTSEEEEEEEETCHHHH------HHTTCCHHHHHHTCEEEEE
T ss_pred             ------------------cCCCccEEE--eccccc--CCCCCcChhhHhhHHHhh------hhhHHHHHHHHHHhCCCCE
Confidence                              333334555  455442  356889999999999766      4555666699999999998


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      ++--+
T Consensus       148 fISfp  152 (200)
T 3fzg_A          148 VISFP  152 (200)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            88754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.40  E-value=6.5e-13  Score=114.82  Aligned_cols=108  Identities=14%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.|++++..                               
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  103 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-------------------------------  103 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            4678999999999999999998876 67999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++...+.+...|..+..+...+ ||+|++...         ......++.++.++|+|||++
T Consensus       104 -----------------~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~---------~~~~~~~l~~~~~~LkpgG~l  156 (210)
T 3c3p_A          104 -----------------NGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD---------VFNGADVLERMNRCLAKNALL  156 (210)
T ss_dssp             -----------------HSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT---------TSCHHHHHHHHGGGEEEEEEE
T ss_pred             -----------------CCCCceEEEEEecHHHHhccCCC-CCEEEEcCC---------hhhhHHHHHHHHHhcCCCeEE
Confidence                             23334588998888663343345 999998633         245678999999999999999


Q ss_pred             EEeeCCC
Q 047406          220 VLEPQPW  226 (290)
Q Consensus       220 ~i~~~~~  226 (290)
                      ++....|
T Consensus       157 v~~~~~~  163 (210)
T 3c3p_A          157 IAVNALR  163 (210)
T ss_dssp             EEESSSS
T ss_pred             EEECccc
Confidence            9965544

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.40  E-value=7.7e-13  Score=115.04  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=88.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+++.++ ..+|+++|+++.+++.|+.++..                               
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  105 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER-------------------------------  105 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5789999999999999999999877 57999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC---C-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---P-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                       .++..++.+...|..+.++.   . .++||+|++....         .....++..+.++|+|
T Consensus       106 -----------------~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~---------~~~~~~l~~~~~~L~p  159 (223)
T 3duw_A          106 -----------------ANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADK---------QNNPAYFEWALKLSRP  159 (223)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCG---------GGHHHHHHHHHHTCCT
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCc---------HHHHHHHHHHHHhcCC
Confidence                             34445688999888653211   1 2579999986543         4557889999999999


Q ss_pred             CcEEEEeeCCCc
Q 047406          216 GGIFVLEPQPWV  227 (290)
Q Consensus       216 gG~l~i~~~~~~  227 (290)
                      ||++++....|.
T Consensus       160 gG~lv~~~~~~~  171 (223)
T 3duw_A          160 GTVIIGDNVVRE  171 (223)
T ss_dssp             TCEEEEESCSGG
T ss_pred             CcEEEEeCCCcC
Confidence            999999765443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.40  E-value=6.5e-13  Score=118.13  Aligned_cols=140  Identities=14%  Similarity=0.107  Sum_probs=87.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhH--cCCceEEEEeCCHHHHHHHHHHHHHH---HHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           62 EGKDCLDIGCNSGIITIQIAQK--FNCRSILGIDIDSNRVADAYWHLRKI---VRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~--~~~~~i~g~Dis~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      ++.+|||+|||+|.+++.+++.  .+..+|+|+|+|+.+++.|+.++...   +..... ......+..    .+.....
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~  125 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE-LERREQSER----FGKPSYL  125 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHH----HCCHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccc-hhhhhhhhh----cccccch
Confidence            5679999999999999999887  56678999999999999999887653   110000 000000000    0000000


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCccee-------------EeecccccCCCC----CCCceeEEEEchhhhhhhhcC--
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVS-------------FKQENFVHGRDS----PEKYYDAILCLSVTKWIHLNW--  197 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~d~~~~~~~----~~~~fD~I~~~~vl~~~~l~~--  197 (290)
                      ..                  ......+.             +.+.|+.+..+.    ...+||+|+|+....... .|  
T Consensus       126 ~~------------------~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~-~~~~  186 (250)
T 1o9g_A          126 EA------------------AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT-HWEG  186 (250)
T ss_dssp             HH------------------HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS-SSSS
T ss_pred             hh------------------hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc-cccc
Confidence            00                  00001133             888888763211    234899999986653221 11  


Q ss_pred             --CchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          198 --GDDGLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       198 --~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                        +.+....++.++.++|+|||++++....
T Consensus       187 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          187 QVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             cccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence              1356689999999999999999996543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.40  E-value=3.4e-12  Score=106.15  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=80.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++  +..+++|+|+|+.+++.|+.++..                                
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   79 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAK--------------------------------   79 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            4678999999999999999888  567999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++ .++.+...|+.+  +.+.+.||+|+|..+          .....++..+.++  |||.++
T Consensus        80 ----------------~~~-~~~~~~~~d~~~--~~~~~~~D~i~~~~~----------~~~~~~l~~~~~~--~gG~l~  128 (183)
T 2yxd_A           80 ----------------FNI-KNCQIIKGRAED--VLDKLEFNKAFIGGT----------KNIEKIIEILDKK--KINHIV  128 (183)
T ss_dssp             ----------------TTC-CSEEEEESCHHH--HGGGCCCSEEEECSC----------SCHHHHHHHHHHT--TCCEEE
T ss_pred             ----------------cCC-CcEEEEECCccc--cccCCCCcEEEECCc----------ccHHHHHHHHhhC--CCCEEE
Confidence                            223 358889999876  233468999999766          2456788888888  999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       129 ~~~~  132 (183)
T 2yxd_A          129 ANTI  132 (183)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.40  E-value=6.6e-13  Score=117.32  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=85.5

Q ss_pred             CcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      .+|||||||+|..+..+++.++ ..+|+++|+|+.+++.|++++..                                  
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~----------------------------------  103 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE----------------------------------  103 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH----------------------------------
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence            3999999999999999999765 56999999999999999998876                                  


Q ss_pred             HHHHhhhcCCCccccCcC-cceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          143 EEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                    .++. .++.+..+|..+.++. +.++||+|++....         .....++..+.++|+|||+++
T Consensus       104 --------------~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~---------~~~~~~l~~~~~~LkpGG~lv  160 (221)
T 3dr5_A          104 --------------AGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP---------MDLKALVDAAWPLLRRGGALV  160 (221)
T ss_dssp             --------------TTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCT---------TTHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------cCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcH---------HHHHHHHHHHHHHcCCCcEEE
Confidence                          3444 5699999987664332 25789999975432         455678999999999999999


Q ss_pred             EeeCCC
Q 047406          221 LEPQPW  226 (290)
Q Consensus       221 i~~~~~  226 (290)
                      +....|
T Consensus       161 ~dn~~~  166 (221)
T 3dr5_A          161 LADALL  166 (221)
T ss_dssp             ETTTTG
T ss_pred             EeCCCC
Confidence            965444

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.40  E-value=1.9e-12  Score=123.40  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.|+.++...                                
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n--------------------------------  269 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN--------------------------------  269 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc--------------------------------
Confidence            458999999999999999999988889999999999999999988762                                


Q ss_pred             HHHHHhhhcCCCccccCcC--cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLF--DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      ++.  ..+.|...|+.+.  .+.++||+|+|+..+++.. .........++.++.++|+|||++
T Consensus       270 ----------------gl~~~~~v~~~~~D~~~~--~~~~~fD~Ii~nppfh~~~-~~~~~~~~~~l~~~~~~LkpgG~l  330 (375)
T 4dcm_A          270 ----------------MPEALDRCEFMINNALSG--VEPFRFNAVLCNPPFHQQH-ALTDNVAWEMFHHARRCLKINGEL  330 (375)
T ss_dssp             ----------------CGGGGGGEEEEECSTTTT--CCTTCEEEEEECCCC--------CCHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------CCCcCceEEEEechhhcc--CCCCCeeEEEECCCcccCc-ccCHHHHHHHHHHHHHhCCCCcEE
Confidence                            221  2478899998773  3557899999988775321 112345568999999999999999


Q ss_pred             EEeeCC
Q 047406          220 VLEPQP  225 (290)
Q Consensus       220 ~i~~~~  225 (290)
                      ++....
T Consensus       331 ~iv~n~  336 (375)
T 4dcm_A          331 YIVANR  336 (375)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            997543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.39  E-value=2.7e-13  Score=120.60  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|+.++..                                 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------------------------  111 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ---------------------------------  111 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            57799999999999999999887667999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC-C-CCC---CCceeEEEEchhhhhhhhcCC---------chHHHHHHH
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-R-DSP---EKYYDAILCLSVTKWIHLNWG---------DDGLITLFM  207 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~---~~~fD~I~~~~vl~~~~l~~~---------~~~~~~~l~  207 (290)
                                     .++..++.+.+.|..+. . +.+   +++||+|+|....++....+.         ......++.
T Consensus       112 ---------------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~  176 (254)
T 2h00_A          112 ---------------NNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTG  176 (254)
T ss_dssp             ---------------TTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------
T ss_pred             ---------------cCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhh
Confidence                           33444588998886541 1 222   258999999755432210000         011235677


Q ss_pred             HHHhhcCCCcEEEEe
Q 047406          208 RIWKLLRPGGIFVLE  222 (290)
Q Consensus       208 ~~~~~LkpgG~l~i~  222 (290)
                      .+.++|+|||.+.+.
T Consensus       177 ~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          177 GITEIMAEGGELEFV  191 (254)
T ss_dssp             CTTTTHHHHTHHHHH
T ss_pred             hHHHHEecCCEEEEE
Confidence            888999999988774

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.38  E-value=1.5e-12  Score=122.55  Aligned_cols=109  Identities=22%  Similarity=0.298  Sum_probs=88.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..                               
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~-------------------------------  110 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKA-------------------------------  110 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHH-------------------------------
Confidence            468899999999999999998886 556999999995 99999988765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+.+.+...|+.+ .+.+.++||+|+|..+..+++   ....+..++..+.++|+|||++
T Consensus       111 -----------------~~~~~~v~~~~~d~~~-~~~~~~~fD~Iis~~~~~~l~---~~~~~~~~l~~~~r~LkpgG~l  169 (349)
T 3q7e_A          111 -----------------NKLDHVVTIIKGKVEE-VELPVEKVDIIISEWMGYCLF---YESMLNTVLHARDKWLAPDGLI  169 (349)
T ss_dssp             -----------------TTCTTTEEEEESCTTT-CCCSSSCEEEEEECCCBBTBT---BTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCcEEEEECcHHH-ccCCCCceEEEEEcccccccc---CchhHHHHHHHHHHhCCCCCEE
Confidence                             4455569999999977 456678999999976543222   2356788999999999999999


Q ss_pred             EEe
Q 047406          220 VLE  222 (290)
Q Consensus       220 ~i~  222 (290)
                      +..
T Consensus       170 i~~  172 (349)
T 3q7e_A          170 FPD  172 (349)
T ss_dssp             ESC
T ss_pred             ccc
Confidence            863

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.38  E-value=3.7e-12  Score=115.02  Aligned_cols=128  Identities=22%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|.++..++.. .+..+|+++|+|+.+++.|+.++..                               
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------  159 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-------------------------------  159 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            56789999999999999999988 4467999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+.  .+.+.||+|++..           .....++.++.++|+|||.+
T Consensus       160 -----------------~~~~~~v~~~~~d~~~~--~~~~~~D~V~~~~-----------~~~~~~l~~~~~~L~pgG~l  209 (277)
T 1o54_A          160 -----------------WGLIERVTIKVRDISEG--FDEKDVDALFLDV-----------PDPWNYIDKCWEALKGGGRF  209 (277)
T ss_dssp             -----------------TTCGGGEEEECCCGGGC--CSCCSEEEEEECC-----------SCGGGTHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCCEEEEECCHHHc--ccCCccCEEEECC-----------cCHHHHHHHHHHHcCCCCEE
Confidence                             23334688889998764  3446899999832           23357789999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..+...                     ...++.+ .+++.||..++.+..
T Consensus       210 ~~~~~~~~---------------------~~~~~~~-~l~~~gf~~~~~~~~  239 (277)
T 1o54_A          210 ATVCPTTN---------------------QVQETLK-KLQELPFIRIEVWES  239 (277)
T ss_dssp             EEEESSHH---------------------HHHHHHH-HHHHSSEEEEEEECC
T ss_pred             EEEeCCHH---------------------HHHHHHH-HHHHCCCceeEEEEE
Confidence            99764210                     0123333 567799998877654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.37  E-value=1.7e-12  Score=115.86  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+|+.++...|+|+|+|+.+++.|+.++......                            
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~----------------------------   96 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAA----------------------------   96 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHS----------------------------
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHH----------------------------
Confidence            4567899999999999999999888889999999999999999876541100                            


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~Lkpg  216 (290)
                                     ......++.+.+.|+.+.++  .+.+.||.|++.....|........  ....++.++.++|+||
T Consensus        97 ---------------~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG  161 (235)
T 3ckk_A           97 ---------------PAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG  161 (235)
T ss_dssp             ---------------TTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred             ---------------HhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence                           01112358999999876433  4568899999865544431000000  0147899999999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      |.|++...
T Consensus       162 G~l~~~td  169 (235)
T 3ckk_A          162 GLVYTITD  169 (235)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEeC
Confidence            99999754

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.37  E-value=2e-12  Score=116.97  Aligned_cols=127  Identities=16%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++. .+..+|+++|+|+.+++.|+.++..                              
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------------------  157 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------------------------------  157 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------------------------------
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh------------------------------
Confidence            357789999999999999999987 4567999999999999999987654                              


Q ss_pred             hhHHHHHHhhhcCCCcccc-CcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAER-NLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                        . + ..++.+...|+.+  +.+.++||+|++..           ++...++.++.++|+|||
T Consensus       158 ------------------~~g-~~~v~~~~~d~~~--~~~~~~fD~Vi~~~-----------~~~~~~l~~~~~~LkpgG  205 (275)
T 1yb2_A          158 ------------------FYD-IGNVRTSRSDIAD--FISDQMYDAVIADI-----------PDPWNHVQKIASMMKPGS  205 (275)
T ss_dssp             ------------------TSC-CTTEEEECSCTTT--CCCSCCEEEEEECC-----------SCGGGSHHHHHHTEEEEE
T ss_pred             ------------------cCC-CCcEEEEECchhc--cCcCCCccEEEEcC-----------cCHHHHHHHHHHHcCCCC
Confidence                              1 2 2358899999876  33457899999821           233578999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++++..++..                     ....+.+ .+.++||..++.+.
T Consensus       206 ~l~i~~~~~~---------------------~~~~~~~-~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          206 VATFYLPNFD---------------------QSEKTVL-SLSASGMHHLETVE  236 (275)
T ss_dssp             EEEEEESSHH---------------------HHHHHHH-HSGGGTEEEEEEEE
T ss_pred             EEEEEeCCHH---------------------HHHHHHH-HHHHCCCeEEEEEE
Confidence            9999765211                     0122333 56789998887754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.37  E-value=1.6e-12  Score=116.05  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +...+.++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+.+..                            
T Consensus        48 l~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----------------------------   97 (260)
T 2avn_A           48 LEEYLKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----------------------------   97 (260)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----------------------------
T ss_pred             HHHhcCCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----------------------------
Confidence            3344457899999999999999998886  4589999999999999876411                            


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                               .  .+...|+.+ ++.+.++||+|+|..++.++  .   ++...++.++.++|+|
T Consensus        98 -------------------------~--~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~--~---~~~~~~l~~~~~~Lkp  144 (260)
T 2avn_A           98 -------------------------K--NVVEAKAED-LPFPSGAFEAVLALGDVLSY--V---ENKDKAFSEIRRVLVP  144 (260)
T ss_dssp             -------------------------S--CEEECCTTS-CCSCTTCEEEEEECSSHHHH--C---SCHHHHHHHHHHHEEE
T ss_pred             -------------------------C--CEEECcHHH-CCCCCCCEEEEEEcchhhhc--c---ccHHHHHHHHHHHcCC
Confidence                                     1  166777755 45567889999998766322  1   2388999999999999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||.+++...+
T Consensus       145 gG~l~~~~~~  154 (260)
T 2avn_A          145 DGLLIATVDN  154 (260)
T ss_dssp             EEEEEEEEEB
T ss_pred             CeEEEEEeCC
Confidence            9999996543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.37  E-value=1.6e-12  Score=112.54  Aligned_cols=109  Identities=10%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+.++..                                
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~--------------------------------   98 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQT--------------------------------   98 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            37899999999999999987665 345899999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcC-cceeEeecccccCCCC-CCCc-eeEEEEchhhhhhhhcCCchHHHHHHHHH--HhhcCC
Q 047406          141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS-PEKY-YDAILCLSVTKWIHLNWGDDGLITLFMRI--WKLLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~-fD~I~~~~vl~~~~l~~~~~~~~~~l~~~--~~~Lkp  215 (290)
                                      .++. .++.+...|+.+..+. +.++ ||+|++...++       ......++..+  .++|+|
T Consensus        99 ----------------~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~~~~l~~~~~~~~Lkp  155 (201)
T 2ift_A           99 ----------------LKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-------FNLAEQAISLLCENNWLKP  155 (201)
T ss_dssp             ----------------TTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-------SCHHHHHHHHHHHTTCEEE
T ss_pred             ----------------hCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC-------CccHHHHHHHHHhcCccCC
Confidence                            2332 3688999998763332 3567 99999976632       24566778888  667999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||+++++..+
T Consensus       156 gG~l~i~~~~  165 (201)
T 2ift_A          156 NALIYVETEK  165 (201)
T ss_dssp             EEEEEEEEES
T ss_pred             CcEEEEEECC
Confidence            9999997653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.36  E-value=2.3e-12  Score=110.89  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.  ..+|+++|+|+.+++.|+.++..                                
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~--------------------------------  121 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKN--------------------------------  121 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHH--------------------------------
Confidence            57899999999999999999987  56999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++. ++.+...|..+. ....++||+|++..+++++.            ..+.++|+|||+++
T Consensus       122 ----------------~~~~-~v~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~------------~~~~~~L~pgG~lv  171 (210)
T 3lbf_A          122 ----------------LDLH-NVSTRHGDGWQG-WQARAPFDAIIVTAAPPEIP------------TALMTQLDEGGILV  171 (210)
T ss_dssp             ----------------TTCC-SEEEEESCGGGC-CGGGCCEEEEEESSBCSSCC------------THHHHTEEEEEEEE
T ss_pred             ----------------cCCC-ceEEEECCcccC-CccCCCccEEEEccchhhhh------------HHHHHhcccCcEEE
Confidence                            2232 588999998774 23357899999998886542            25889999999999


Q ss_pred             EeeCC
Q 047406          221 LEPQP  225 (290)
Q Consensus       221 i~~~~  225 (290)
                      +..++
T Consensus       172 ~~~~~  176 (210)
T 3lbf_A          172 LPVGE  176 (210)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            98764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=111.41  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++     .+++|+|+|+.                                           
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------------------------------   97 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------------------------------   97 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------------------------------
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------------------------------
Confidence            577899999999999987763     48999999874                                           


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                           .+.+...|+.+ .+.+.++||+|+|..++||       .+...++.++.++|+|||.++
T Consensus        98 ---------------------~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~-------~~~~~~l~~~~~~L~~gG~l~  148 (215)
T 2zfu_A           98 ---------------------DPRVTVCDMAQ-VPLEDESVDVAVFCLSLMG-------TNIRDFLEEANRVLKPGGLLK  148 (215)
T ss_dssp             ---------------------STTEEESCTTS-CSCCTTCEEEEEEESCCCS-------SCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------------CceEEEecccc-CCCCCCCEeEEEEehhccc-------cCHHHHHHHHHHhCCCCeEEE
Confidence                                 14466777655 4556678999999998852       357899999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +......                   ...++++.. +++++||++++....
T Consensus       149 i~~~~~~-------------------~~~~~~~~~-~l~~~Gf~~~~~~~~  179 (215)
T 2zfu_A          149 VAEVSSR-------------------FEDVRTFLR-AVTKLGFKIVSKDLT  179 (215)
T ss_dssp             EEECGGG-------------------CSCHHHHHH-HHHHTTEEEEEEECC
T ss_pred             EEEcCCC-------------------CCCHHHHHH-HHHHCCCEEEEEecC
Confidence            9643110                   013455555 899999998876543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.35  E-value=1.6e-11  Score=110.16  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=90.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||+|||+|..+..+|...+ ..+|+|+|+|+.+++........                              
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------------------------------  123 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------------------------------  123 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------------------------
Confidence            46899999999999999999998754 55899999999987665443222                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHH-HHHHHHhhcCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLIT-LFMRIWKLLRP  215 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~-~l~~~~~~Lkp  215 (290)
                                           ..++.+...|.....  ....++||+|++....         .++.. ++..+.+.|+|
T Consensus       124 ---------------------r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---------~~~~~il~~~~~~~Lkp  173 (232)
T 3id6_C          124 ---------------------RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---------PDQTDIAIYNAKFFLKV  173 (232)
T ss_dssp             ---------------------CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---------TTHHHHHHHHHHHHEEE
T ss_pred             ---------------------cCCeEEEEcccccchhhhccccceEEEEecCCC---------hhHHHHHHHHHHHhCCC
Confidence                                 125788888876521  1124689999986443         23444 44556669999


Q ss_pred             CcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          216 GGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       216 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ||.|+++... .|...    +.....++       +.... .|+++||++++.+.-
T Consensus       174 GG~lvisik~-~~~d~----t~~~~e~~-------~~~~~-~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          174 NGDMLLVIKA-RSIDV----TKDPKEIY-------KTEVE-KLENSNFETIQIINL  216 (232)
T ss_dssp             EEEEEEEEC------------CCSSSST-------THHHH-HHHHTTEEEEEEEEC
T ss_pred             CeEEEEEEcc-CCccc----CCCHHHHH-------HHHHH-HHHHCCCEEEEEecc
Confidence            9999996421 01000    00011111       22233 678899999998766

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.35  E-value=5.2e-12  Score=111.57  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+.++...                             
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------------------------  144 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-----------------------------  144 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----------------------------
Confidence            3678999999999999999999884 4569999999999999999987651                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+ ..++.+...|+.+. +.+.+.||+|++..           .+...++.++.++|+|||.
T Consensus       145 ------------------~g-~~~v~~~~~d~~~~-~~~~~~~D~v~~~~-----------~~~~~~l~~~~~~L~~gG~  193 (258)
T 2pwy_A          145 ------------------WQ-VENVRFHLGKLEEA-ELEEAAYDGVALDL-----------MEPWKVLEKAALALKPDRF  193 (258)
T ss_dssp             ------------------CC-CCCEEEEESCGGGC-CCCTTCEEEEEEES-----------SCGGGGHHHHHHHEEEEEE
T ss_pred             ------------------cC-CCCEEEEECchhhc-CCCCCCcCEEEECC-----------cCHHHHHHHHHHhCCCCCE
Confidence                              02 23588899998763 44557899999831           2334778999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++..+
T Consensus       194 l~~~~~  199 (258)
T 2pwy_A          194 LVAYLP  199 (258)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            999754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.35  E-value=1.7e-12  Score=118.33  Aligned_cols=106  Identities=11%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|++++..                                
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~--------------------------------   89 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALAD--------------------------------   89 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSS--------------------------------
T ss_pred             CCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            57889999999999999999886  45899999999999999886432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .  .-...+...+... .....++||+|+|..+++|+.    .++...++.++.++| |||+++
T Consensus        90 ----------------~--~v~~~~~~~~~~~-~~~~~~~fD~Vv~~~~l~~~~----~~~~~~~l~~l~~lL-PGG~l~  145 (261)
T 3iv6_A           90 ----------------R--CVTIDLLDITAEI-PKELAGHFDFVLNDRLINRFT----TEEARRACLGMLSLV-GSGTVR  145 (261)
T ss_dssp             ----------------S--CCEEEECCTTSCC-CGGGTTCCSEEEEESCGGGSC----HHHHHHHHHHHHHHH-TTSEEE
T ss_pred             ----------------c--cceeeeeeccccc-ccccCCCccEEEEhhhhHhCC----HHHHHHHHHHHHHhC-cCcEEE
Confidence                            0  0112222222200 011246899999999987653    467889999999999 999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      ++..
T Consensus       146 lS~~  149 (261)
T 3iv6_A          146 ASVK  149 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.35  E-value=2.5e-12  Score=124.49  Aligned_cols=114  Identities=14%  Similarity=0.164  Sum_probs=86.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.+++.+|...++.+|+|+|+|+.+++.|+.++..+...       .                   
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr-------~-------------------  224 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW-------M-------------------  224 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHH-------H-------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-------H-------------------
Confidence            36889999999999999999998877767999999999999999876431000       0                   


Q ss_pred             hHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCC--CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          140 AAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPE--KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~--~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                     ...++ ..++.|.++|+.+. +...  ..||+|++++.+.       .+++...|.++.+.|+||
T Consensus       225 ---------------~~~Gl~~~rVefi~GD~~~l-p~~d~~~~aDVVf~Nn~~F-------~pdl~~aL~Ei~RvLKPG  281 (438)
T 3uwp_A          225 ---------------KWYGKKHAEYTLERGDFLSE-EWRERIANTSVIFVNNFAF-------GPEVDHQLKERFANMKEG  281 (438)
T ss_dssp             ---------------HHHTBCCCEEEEEECCTTSH-HHHHHHHTCSEEEECCTTC-------CHHHHHHHHHHHTTSCTT
T ss_pred             ---------------HHhCCCCCCeEEEECcccCC-ccccccCCccEEEEccccc-------CchHHHHHHHHHHcCCCC
Confidence                           00122 24699999999772 3222  4699999987652       257788889999999999


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |+|++.
T Consensus       282 GrIVss  287 (438)
T 3uwp_A          282 GRIVSS  287 (438)
T ss_dssp             CEEEES
T ss_pred             cEEEEe
Confidence            999984

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.35  E-value=2.2e-12  Score=115.63  Aligned_cols=109  Identities=19%  Similarity=0.322  Sum_probs=87.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..++..++ ..+|+++|+|+.+++.|++++..                               
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-------------------------------  126 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-------------------------------  126 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-------------------------------
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5678999999999999999999876 57999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC------CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP------EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                       .++..++.+..+|..+.++..      .++||+|++...         ......++..+.++|
T Consensus       127 -----------------~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---------~~~~~~~l~~~~~~L  180 (247)
T 1sui_A          127 -----------------AGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---------KDNYLNYHKRLIDLV  180 (247)
T ss_dssp             -----------------TTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---------STTHHHHHHHHHHHB
T ss_pred             -----------------cCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---------hHHHHHHHHHHHHhC
Confidence                             334456888888876532211      478999998543         245678899999999


Q ss_pred             CCCcEEEEeeCCC
Q 047406          214 RPGGIFVLEPQPW  226 (290)
Q Consensus       214 kpgG~l~i~~~~~  226 (290)
                      +|||++++....|
T Consensus       181 kpGG~lv~d~~~~  193 (247)
T 1sui_A          181 KVGGVIGYDNTLW  193 (247)
T ss_dssp             CTTCCEEEECTTG
T ss_pred             CCCeEEEEecCCc
Confidence            9999999975544

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.35  E-value=2.3e-12  Score=122.49  Aligned_cols=109  Identities=23%  Similarity=0.323  Sum_probs=87.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++..                               
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~-------------------------------  107 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKA-------------------------------  107 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHH-------------------------------
Confidence            367899999999999999998886 44599999999 999999988765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++...+.+...|+.+ ++.+ ++||+|+|..+.+++.   ....+..++..+.++|+|||++
T Consensus       108 -----------------~~~~~~v~~~~~d~~~-~~~~-~~~D~Iv~~~~~~~l~---~e~~~~~~l~~~~~~LkpgG~l  165 (376)
T 3r0q_C          108 -----------------NNLDHIVEVIEGSVED-ISLP-EKVDVIISEWMGYFLL---RESMFDSVISARDRWLKPTGVM  165 (376)
T ss_dssp             -----------------TTCTTTEEEEESCGGG-CCCS-SCEEEEEECCCBTTBT---TTCTHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCeEEEEECchhh-cCcC-CcceEEEEcChhhccc---chHHHHHHHHHHHhhCCCCeEE
Confidence                             4455669999999976 3444 7899999965543221   2345788999999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       166 i~~~  169 (376)
T 3r0q_C          166 YPSH  169 (376)
T ss_dssp             ESSE
T ss_pred             EEec
Confidence            8843

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.34  E-value=1.3e-12  Score=109.67  Aligned_cols=109  Identities=13%  Similarity=0.169  Sum_probs=82.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+.++..                                
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   89 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAI--------------------------------   89 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            47889999999999999988774 556999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH--HhhcCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI--WKLLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~--~~~Lkp  215 (290)
                                      .++..++.+...|+.+..+   ...++||+|++....+.       ......+..+  .++|+|
T Consensus        90 ----------------~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~-------~~~~~~~~~l~~~~~L~~  146 (187)
T 2fhp_A           90 ----------------TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK-------QEIVSQLEKMLERQLLTN  146 (187)
T ss_dssp             ----------------HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG-------CCHHHHHHHHHHTTCEEE
T ss_pred             ----------------hCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCc-------hhHHHHHHHHHHhcccCC
Confidence                            2333468889988866211   12578999999766421       2334556666  888999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||++++....
T Consensus       147 gG~l~~~~~~  156 (187)
T 2fhp_A          147 EAVIVCETDK  156 (187)
T ss_dssp             EEEEEEEEET
T ss_pred             CCEEEEEeCC
Confidence            9999997653

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.34  E-value=3.9e-12  Score=119.22  Aligned_cols=147  Identities=15%  Similarity=0.119  Sum_probs=102.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|..+..+++.+|..+++++|+ +.+++.|+.                                   
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------------------  234 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----------------------------------  234 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----------------------------------
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----------------------------------
Confidence            35678999999999999999999998889999999 777654321                                   


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC---C
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP---G  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp---g  216 (290)
                                         . .++.+...|+.+  +.+  .||+|++..++|++    .++....+++++.++|+|   |
T Consensus       235 -------------------~-~~v~~~~~d~~~--~~~--~~D~v~~~~vlh~~----~d~~~~~~l~~~~~~L~p~~~g  286 (358)
T 1zg3_A          235 -------------------N-ENLNFVGGDMFK--SIP--SADAVLLKWVLHDW----NDEQSLKILKNSKEAISHKGKD  286 (358)
T ss_dssp             -------------------C-SSEEEEECCTTT--CCC--CCSEEEEESCGGGS----CHHHHHHHHHHHHHHTGGGGGG
T ss_pred             -------------------C-CCcEEEeCccCC--CCC--CceEEEEcccccCC----CHHHHHHHHHHHHHhCCCCCCC
Confidence                               1 248899999876  333  49999999999744    455667999999999999   9


Q ss_pred             cEEEEeeCCCchhh------hhhhhhhh-hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVSYE------KNRRVSET-TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |.+++.........      ........ +...........+++.+ +++++||+.+++...
T Consensus       287 G~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~-ll~~aGf~~~~~~~~  347 (358)
T 1zg3_A          287 GKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEK-LIYDAGFSSYKITPI  347 (358)
T ss_dssp             CEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHH-HHHHTTCCEEEEEEE
T ss_pred             cEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHH-HHHHcCCCeeEEEec
Confidence            99998543211100      00111111 00111222345566666 899999999988764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=1.3e-11  Score=107.63  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.+..++..                              
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~------------------------------  120 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------------------------------  120 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------------------------------
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc------------------------------
Confidence            35788999999999999999998763 46999999999999998876432                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                        .   .++.+...|+.+..  ....++||+|++....        .+....++.++.++|+||
T Consensus       121 ------------------~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~--------~~~~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          121 ------------------R---RNIVPILGDATKPEEYRALVPKVDVIFEDVAQ--------PTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             ------------------C---TTEEEEECCTTCGGGGTTTCCCEEEEEECCCS--------TTHHHHHHHHHHHHEEEE
T ss_pred             ------------------c---CCCEEEEccCCCcchhhcccCCceEEEECCCC--------HhHHHHHHHHHHHhcCCC
Confidence                              1   35888888886621  1223589999975441        233445699999999999


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |.+++.
T Consensus       172 G~l~~~  177 (227)
T 1g8a_A          172 GYGMIA  177 (227)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            999996

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.34  E-value=1.4e-12  Score=116.58  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=79.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.|+...                                  
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------------------------------  129 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------------------------------  129 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------------------------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------------------------------
Confidence            4678999999999999999998876679999999999999987631                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+...|+.+ ++.+.++||+|+|..+.             ..+.++.++|+|||.++
T Consensus       130 --------------------~~~~~~~~d~~~-~~~~~~~fD~v~~~~~~-------------~~l~~~~~~L~pgG~l~  175 (269)
T 1p91_A          130 --------------------PQVTFCVASSHR-LPFSDTSMDAIIRIYAP-------------CKAEELARVVKPGGWVI  175 (269)
T ss_dssp             --------------------TTSEEEECCTTS-CSBCTTCEEEEEEESCC-------------CCHHHHHHHEEEEEEEE
T ss_pred             --------------------CCcEEEEcchhh-CCCCCCceeEEEEeCCh-------------hhHHHHHHhcCCCcEEE
Confidence                                136778888765 45566799999986553             23688999999999999


Q ss_pred             EeeCCC
Q 047406          221 LEPQPW  226 (290)
Q Consensus       221 i~~~~~  226 (290)
                      +..+..
T Consensus       176 ~~~~~~  181 (269)
T 1p91_A          176 TATPGP  181 (269)
T ss_dssp             EEEECT
T ss_pred             EEEcCH
Confidence            976543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.33  E-value=3.9e-12  Score=110.12  Aligned_cols=106  Identities=11%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|+.++..                                 
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~---------------------------------   99 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLAT---------------------------------   99 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            78999999999999999877653 34899999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~LkpgG~l  219 (290)
                                     .++ .++.+.+.|+.+..+...+.||+|++....+       ......++..+.+  +|+|||++
T Consensus       100 ---------------~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-------~~~~~~~l~~l~~~~~L~pgG~l  156 (202)
T 2fpo_A          100 ---------------LKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-------RGLLEETINLLEDNGWLADEALI  156 (202)
T ss_dssp             ---------------TTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-------TTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             ---------------cCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCCC-------CCcHHHHHHHHHhcCccCCCcEE
Confidence                           233 4688999998664344557899999876532       1344567777765  59999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      +++..
T Consensus       157 ~i~~~  161 (202)
T 2fpo_A          157 YVESE  161 (202)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.33  E-value=5.9e-12  Score=116.36  Aligned_cols=143  Identities=15%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.....                             
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~-----------------------------  144 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR-----------------------------  144 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----------------------------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc-----------------------------
Confidence            467899999999999999998875667999999999999999987643100                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG  217 (290)
                                      .....++.+...|+.+.... +.++||+|++.....+.    ....+  ..++.++.++|+|||
T Consensus       145 ----------------~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~----~~~~l~~~~~l~~~~~~LkpgG  204 (304)
T 3bwc_A          145 ----------------SLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAG----PASKLFGEAFYKDVLRILKPDG  204 (304)
T ss_dssp             ----------------GGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC-------------CCHHHHHHHHHHEEEEE
T ss_pred             ----------------ccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccc----cchhhhHHHHHHHHHHhcCCCc
Confidence                            01123588888887663222 35789999996554321    11222  688999999999999


Q ss_pred             EEEEeeCC-CchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          218 IFVLEPQP-WVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++++.... |..                  ......+.+ .++++||..++.+..
T Consensus       205 ~lv~~~~~~~~~------------------~~~~~~~~~-~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          205 ICCNQGESIWLD------------------LELIEKMSR-FIRETGFASVQYALM  240 (304)
T ss_dssp             EEEEEECCTTTC------------------HHHHHHHHH-HHHHHTCSEEEEEEC
T ss_pred             EEEEecCCcccc------------------hHHHHHHHH-HHHhCCCCcEEEEEe
Confidence            99996432 110                  011233334 688899998877654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.33  E-value=3.3e-12  Score=112.82  Aligned_cols=109  Identities=18%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+++.++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  107 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE-------------------------------  107 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5789999999999999999999876 56999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--------------CCC--CceeEEEEchhhhhhhhcCCchHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--------------SPE--KYYDAILCLSVTKWIHLNWGDDGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------------~~~--~~fD~I~~~~vl~~~~l~~~~~~~~  203 (290)
                                       .++...+.+...|..+..+              .+.  ++||+|++....         +...
T Consensus       108 -----------------~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~---------~~~~  161 (239)
T 2hnk_A          108 -----------------NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK---------ENYP  161 (239)
T ss_dssp             -----------------TTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG---------GGHH
T ss_pred             -----------------cCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH---------HHHH
Confidence                             2233347777777654211              122  689999986443         4567


Q ss_pred             HHHHHHHhhcCCCcEEEEeeCCC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      .++..+.++|+|||++++....|
T Consensus       162 ~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          162 NYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             HHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHHHHHHHcCCCeEEEEEcccc
Confidence            88999999999999999976544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.33  E-value=5.7e-13  Score=119.15  Aligned_cols=109  Identities=16%  Similarity=0.246  Sum_probs=88.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+|..++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------------------------------  107 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE-------------------------------  107 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH-------------------------------
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5678999999999999999999775 57999999999999999998776                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++..++.+..+|..+.++..     .++||+|++....         .....++..+.++|+
T Consensus       108 -----------------~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~---------~~~~~~l~~~~~~Lk  161 (242)
T 3r3h_A          108 -----------------AKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK---------TNYLNYYELALKLVT  161 (242)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG---------GGHHHHHHHHHHHEE
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh---------HHhHHHHHHHHHhcC
Confidence                             344457899999986632221     4789999985442         456778999999999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||++++....|
T Consensus       162 pGG~lv~d~~~~  173 (242)
T 3r3h_A          162 PKGLIAIDNIFW  173 (242)
T ss_dssp             EEEEEEEECSSS
T ss_pred             CCeEEEEECCcc
Confidence            999999965544

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.33  E-value=7.6e-12  Score=117.37  Aligned_cols=108  Identities=22%  Similarity=0.326  Sum_probs=85.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..                               
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~-------------------------------  108 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRL-------------------------------  108 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHH-------------------------------
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHH-------------------------------
Confidence            367899999999999999998886 455899999997 99999887765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++..++.+...|+.+ .+.+.++||+|+|..+...+.   ....+..++..+.++|+|||++
T Consensus       109 -----------------~~~~~~i~~~~~d~~~-~~~~~~~~D~Ivs~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~l  167 (340)
T 2fyt_A          109 -----------------NKLEDTITLIKGKIEE-VHLPVEKVDVIISEWMGYFLL---FESMLDSVLYAKNKYLAKGGSV  167 (340)
T ss_dssp             -----------------TTCTTTEEEEESCTTT-SCCSCSCEEEEEECCCBTTBT---TTCHHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCcEEEEEeeHHH-hcCCCCcEEEEEEcCchhhcc---CHHHHHHHHHHHHhhcCCCcEE
Confidence                             3444578999999876 455667899999976321111   1346778999999999999999


Q ss_pred             EE
Q 047406          220 VL  221 (290)
Q Consensus       220 ~i  221 (290)
                      +.
T Consensus       168 ip  169 (340)
T 2fyt_A          168 YP  169 (340)
T ss_dssp             ES
T ss_pred             Ec
Confidence            83

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.32  E-value=5.6e-12  Score=112.00  Aligned_cols=109  Identities=21%  Similarity=0.309  Sum_probs=87.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||||||+|..+..+++.++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------------------------------  117 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK-------------------------------  117 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5678999999999999999999876 57999999999999999998775                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                       .++..++.+..+|..+.++.      +.++||+|++...         ......++..+.++|
T Consensus       118 -----------------~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~---------~~~~~~~l~~~~~~L  171 (237)
T 3c3y_A          118 -----------------AGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD---------KPNYIKYHERLMKLV  171 (237)
T ss_dssp             -----------------TTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC---------GGGHHHHHHHHHHHE
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc---------hHHHHHHHHHHHHhc
Confidence                             33444688888887653221      1478999997532         245678999999999


Q ss_pred             CCCcEEEEeeCCC
Q 047406          214 RPGGIFVLEPQPW  226 (290)
Q Consensus       214 kpgG~l~i~~~~~  226 (290)
                      +|||++++....|
T Consensus       172 ~pGG~lv~d~~~~  184 (237)
T 3c3y_A          172 KVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEEEEEECTTG
T ss_pred             CCCeEEEEecCCc
Confidence            9999999975544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.32  E-value=7.4e-12  Score=116.37  Aligned_cols=116  Identities=14%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+..                          
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~--------------------------  156 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS--------------------------  156 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH--------------------------
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcc--------------------------
Confidence            4688999999999999999999875 4469999999999999999987652100                          


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                            |     .+.. -.++..++.+...|+.+.. +.+.+.||+|++.....           ..++.++.++|+|||
T Consensus       157 ------~-----~ln~-~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~-----------~~~l~~~~~~LkpgG  213 (336)
T 2b25_A          157 ------W-----KLSH-VEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP-----------HVTLPVFYPHLKHGG  213 (336)
T ss_dssp             ------H-----TTTC-SSCCCCCEEEEESCTTCCC-------EEEEEECSSST-----------TTTHHHHGGGEEEEE
T ss_pred             ------c-----cccc-ccccCCceEEEECChHHcccccCCCCeeEEEECCCCH-----------HHHHHHHHHhcCCCc
Confidence                  0     0000 0112346889999987642 23456899999853321           236789999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .+++..+
T Consensus       214 ~lv~~~~  220 (336)
T 2b25_A          214 VCAVYVV  220 (336)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9998665

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.31  E-value=1.5e-12  Score=120.58  Aligned_cols=144  Identities=17%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.....                                 
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~---------------------------------  129 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDD---------------------------------  129 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCT---------------------------------
T ss_pred             ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc---------------------------------
Confidence            46789999999999999988886 55699999999999988543200                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                          ....+...|+...  ...+..+||+|+|..+++         .+..+|..+.++|+|||.
T Consensus       130 --------------------rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~---------sl~~vL~e~~rvLkpGG~  180 (291)
T 3hp7_A          130 --------------------RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI---------SLNLILPALAKILVDGGQ  180 (291)
T ss_dssp             --------------------TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS---------CGGGTHHHHHHHSCTTCE
T ss_pred             --------------------ccceecccCceecchhhCCCCCCCEEEEEeeHh---------hHHHHHHHHHHHcCcCCE
Confidence                                0011222232221  011334599999876653         236789999999999999


Q ss_pred             EEEeeCC-Cchhhhhhhhh--hhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQP-WVSYEKNRRVS--ETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++...| |.....  .+.  .... .........+++.+ ++..+||.+..+..+
T Consensus       181 lv~lvkPqfe~~~~--~~~~~G~vr-d~~~~~~~~~~v~~-~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          181 VVALVKPQFEAGRE--QIGKNGIVR-ESSIHEKVLETVTA-FAVDYGFSVKGLDFS  232 (291)
T ss_dssp             EEEEECGGGTSCGG--GCC-CCCCC-CHHHHHHHHHHHHH-HHHHTTEEEEEEEEC
T ss_pred             EEEEECcccccChh--hcCCCCccC-CHHHHHHHHHHHHH-HHHHCCCEEEEEEEC
Confidence            9885322 111000  000  0000 00011223344444 788999999888776

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.31  E-value=9.9e-13  Score=108.65  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++..+  .|+|+|+|+.+++.|+.++..                                 
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~---------------------------------   85 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRR---------------------------------   85 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence            789999999999999999988743  599999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH--hhcCCC
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW--KLLRPG  216 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~--~~Lkpg  216 (290)
                                     .++  ++.+.+.|+.+..+.   ..++||+|++....+ .       ....++..+.  ++|+||
T Consensus        86 ---------------~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~-------~~~~~~~~~~~~~~L~~g  140 (171)
T 1ws6_A           86 ---------------TGL--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-M-------DLAALFGELLASGLVEAG  140 (171)
T ss_dssp             ---------------HTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-S-------CTTHHHHHHHHHTCEEEE
T ss_pred             ---------------cCC--ceEEEeccHHHHHHhhhccCCceEEEEECCCCc-h-------hHHHHHHHHHhhcccCCC
Confidence                           222  477888887652111   124799999986653 1       1223444444  999999


Q ss_pred             cEEEEeeCC
Q 047406          217 GIFVLEPQP  225 (290)
Q Consensus       217 G~l~i~~~~  225 (290)
                      |+++++..+
T Consensus       141 G~~~~~~~~  149 (171)
T 1ws6_A          141 GLYVLQHPK  149 (171)
T ss_dssp             EEEEEEEET
T ss_pred             cEEEEEeCC
Confidence            999997654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.31  E-value=3.6e-12  Score=125.31  Aligned_cols=107  Identities=21%  Similarity=0.330  Sum_probs=84.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..                                
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~--------------------------------  202 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKS--------------------------------  202 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHH--------------------------------
T ss_pred             cCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHH--------------------------------
Confidence            4678999999999999998877 4666999999998 99999887765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++.+++.+...|+.+ .+. .++||+|+|..+.++.    ..+.....+..+.++|+|||+++
T Consensus       203 ----------------~gl~~~v~~~~~d~~~-~~~-~~~fD~Ivs~~~~~~~----~~e~~~~~l~~~~~~LkpgG~li  260 (480)
T 3b3j_A          203 ----------------NNLTDRIVVIPGKVEE-VSL-PEQVDIIISEPMGYML----FNERMLESYLHAKKYLKPSGNMF  260 (480)
T ss_dssp             ----------------TTCTTTEEEEESCTTT-CCC-SSCEEEEECCCCHHHH----TCHHHHHHHHHGGGGEEEEEEEE
T ss_pred             ----------------cCCCCcEEEEECchhh-Ccc-CCCeEEEEEeCchHhc----CcHHHHHHHHHHHHhcCCCCEEE
Confidence                            4455679999999876 233 3689999997765322    23566777888999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      ++.
T Consensus       261 ~~~  263 (480)
T 3b3j_A          261 PTI  263 (480)
T ss_dssp             SCE
T ss_pred             EEe
Confidence            744

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.30  E-value=9.3e-12  Score=108.38  Aligned_cols=110  Identities=28%  Similarity=0.321  Sum_probs=82.9

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++.++...+..                         
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------------------  128 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-------------------------  128 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-------------------------
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-------------------------
Confidence            356789999999999999999998764 359999999999999999877541100                         


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         .....++.+...|.... ....++||+|++...++.            ++.++.++|+|||
T Consensus       129 -------------------~~~~~~v~~~~~d~~~~-~~~~~~fD~i~~~~~~~~------------~~~~~~~~LkpgG  176 (226)
T 1i1n_A          129 -------------------LLSSGRVQLVVGDGRMG-YAEEAPYDAIHVGAAAPV------------VPQALIDQLKPGG  176 (226)
T ss_dssp             -------------------HHHTSSEEEEESCGGGC-CGGGCCEEEEEECSBBSS------------CCHHHHHTEEEEE
T ss_pred             -------------------ccCCCcEEEEECCcccC-cccCCCcCEEEECCchHH------------HHHHHHHhcCCCc
Confidence                               00023578888888653 223568999999877632            2467899999999


Q ss_pred             EEEEeeCC
Q 047406          218 IFVLEPQP  225 (290)
Q Consensus       218 ~l~i~~~~  225 (290)
                      ++++...+
T Consensus       177 ~lv~~~~~  184 (226)
T 1i1n_A          177 RLILPVGP  184 (226)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEEec
Confidence            99997654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.30  E-value=1.2e-11  Score=110.00  Aligned_cols=123  Identities=14%  Similarity=0.116  Sum_probs=85.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+.++......                            
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------------------------   99 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNN----------------------------   99 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHT----------------------------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhc----------------------------
Confidence            4678999999999999999999887779999999999999999987652100                            


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCC--chHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWG--DDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~--~~~~~~~l~~~~~~Lkpg  216 (290)
                                +  ....++ .++.+...|+.+.++  .+.+.+|.|+....-.|......  .-....++.++.++|+||
T Consensus       100 ----------~--~~~~~~-~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg  166 (246)
T 2vdv_E          100 ----------T--ASKHGF-QNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG  166 (246)
T ss_dssp             ----------C---CCSTT-TTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred             ----------c--ccccCC-CcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence                      0  000022 358899999876433  45678999986432222100000  000147899999999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      |+|++...
T Consensus       167 G~l~~~td  174 (246)
T 2vdv_E          167 GVVYTITD  174 (246)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEec
Confidence            99999653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.30  E-value=2.5e-11  Score=112.62  Aligned_cols=115  Identities=22%  Similarity=0.230  Sum_probs=84.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||+|||+|..+..+++.++ ..+|+|+|+|+.+++.++.++...                             
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~-----------------------------  166 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL-----------------------------  166 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh-----------------------------
Confidence            35789999999999999999998875 368999999999999999988762                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchh------hhhhh---hcCCc-------hHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSV------TKWIH---LNWGD-------DGL  202 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v------l~~~~---l~~~~-------~~~  202 (290)
                                         ++. ++.+...|+.+. +...+.||+|++...      ++...   ..|..       ..+
T Consensus       167 -------------------g~~-~v~~~~~D~~~~-~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q  225 (315)
T 1ixk_A          167 -------------------GVL-NVILFHSSSLHI-GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQ  225 (315)
T ss_dssp             -------------------TCC-SEEEESSCGGGG-GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHH
T ss_pred             -------------------CCC-eEEEEECChhhc-ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHH
Confidence                               222 478888888663 223468999998422      11000   00111       123


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeC
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ..++.++.++|+|||++++++-
T Consensus       226 ~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          226 MRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHHhCCCCCEEEEEeC
Confidence            6899999999999999999653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.30  E-value=6e-12  Score=117.78  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+.++..                                 
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~---------------------------------  242 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA---------------------------------  242 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            56799999999999999999987767999999999999999998765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     .++  .+.+...|+.+.   ..++||+|+|...+|+.. ....+....++.++.++|+|||.+++
T Consensus       243 ---------------~~~--~~~~~~~d~~~~---~~~~fD~Iv~~~~~~~g~-~~~~~~~~~~l~~~~~~LkpgG~l~i  301 (343)
T 2pjd_A          243 ---------------NGV--EGEVFASNVFSE---VKGRFDMIISNPPFHDGM-QTSLDAAQTLIRGAVRHLNSGGELRI  301 (343)
T ss_dssp             ---------------TTC--CCEEEECSTTTT---CCSCEEEEEECCCCCSSS-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ---------------hCC--CCEEEEcccccc---ccCCeeEEEECCCcccCc-cCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence                           222  245677777653   357899999998876410 01125678999999999999999999


Q ss_pred             eeCC
Q 047406          222 EPQP  225 (290)
Q Consensus       222 ~~~~  225 (290)
                      ....
T Consensus       302 ~~~~  305 (343)
T 2pjd_A          302 VANA  305 (343)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            7543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.29  E-value=4.4e-13  Score=117.93  Aligned_cols=104  Identities=20%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|+.++..                                
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~--------------------------------  122 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEV--------------------------------  122 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            47899999999999999999986  36999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+.+.|+.+. + +.++||+|++...+++..      .....+.++.++|+|||+++
T Consensus       123 ----------------~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~~~~~~~------~~~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          123 ----------------YGIADKIEFICGDFLLL-A-SFLKADVVFLSPPWGGPD------YATAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             ----------------TTCGGGEEEEESCHHHH-G-GGCCCSEEEECCCCSSGG------GGGSSSBCTTTSCSSCHHHH
T ss_pred             ----------------cCCCcCeEEEECChHHh-c-ccCCCCEEEECCCcCCcc------hhhhHHHHHHhhcCCcceeH
Confidence                            33434689999998773 2 457899999988876543      22335667889999999977


Q ss_pred             Ee
Q 047406          221 LE  222 (290)
Q Consensus       221 i~  222 (290)
                      +.
T Consensus       179 ~~  180 (241)
T 3gdh_A          179 FR  180 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.29  E-value=9.5e-12  Score=115.08  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||||||+|.++..+++..+ ..+|+++|+|+.+++.|+.++..                              
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------------------------  122 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER------------------------------  122 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            35789999999999999999998866 35799999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++. ++.+...|+.+.. .+.++||+|++..+++++.            ..+.++|+|||+
T Consensus       123 ------------------~g~~-~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~------------~~~~~~LkpgG~  170 (317)
T 1dl5_A          123 ------------------LGIE-NVIFVCGDGYYGV-PEFSPYDVIFVTVGVDEVP------------ETWFTQLKEGGR  170 (317)
T ss_dssp             ------------------TTCC-SEEEEESCGGGCC-GGGCCEEEEEECSBBSCCC------------HHHHHHEEEEEE
T ss_pred             ------------------cCCC-CeEEEECChhhcc-ccCCCeEEEEEcCCHHHHH------------HHHHHhcCCCcE
Confidence                              2333 3889999987632 2347899999999886442            467889999999


Q ss_pred             EEEeeCC
Q 047406          219 FVLEPQP  225 (290)
Q Consensus       219 l~i~~~~  225 (290)
                      +++...+
T Consensus       171 lvi~~~~  177 (317)
T 1dl5_A          171 VIVPINL  177 (317)
T ss_dssp             EEEEBCB
T ss_pred             EEEEECC
Confidence            9997654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=1.1e-11  Score=106.81  Aligned_cols=104  Identities=21%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|+.++...                             
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------------------------  125 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL-----------------------------  125 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Confidence            35788999999999999999999873 369999999999999999876541                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                         ++ .++.+...|+....+ ..++||+|++..+++++.            .++.++|+|||+
T Consensus       126 -------------------~~-~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~~------------~~~~~~L~pgG~  172 (215)
T 2yxe_A          126 -------------------GY-DNVIVIVGDGTLGYE-PLAPYDRIYTTAAGPKIP------------EPLIRQLKDGGK  172 (215)
T ss_dssp             -------------------TC-TTEEEEESCGGGCCG-GGCCEEEEEESSBBSSCC------------HHHHHTEEEEEE
T ss_pred             -------------------CC-CCeEEEECCcccCCC-CCCCeeEEEECCchHHHH------------HHHHHHcCCCcE
Confidence                               12 247888888754322 246899999999886442            478999999999


Q ss_pred             EEEeeCC
Q 047406          219 FVLEPQP  225 (290)
Q Consensus       219 l~i~~~~  225 (290)
                      +++..++
T Consensus       173 lv~~~~~  179 (215)
T 2yxe_A          173 LLMPVGR  179 (215)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9997654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.29  E-value=7.8e-12  Score=108.91  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=83.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      .+.++.+|||+|||+|..+..+++..+     ..+|+++|+++.+++.|+.++...                        
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------  132 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD------------------------  132 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH------------------------
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------
Confidence            456789999999999999999998763     458999999999999999987651                        


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCc----CcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHH
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNL----FDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLF  206 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l  206 (290)
                                              ++    ..++.+...|..+..+   ...++||+|++...+++            ++
T Consensus       133 ------------------------~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~------------~~  176 (227)
T 2pbf_A          133 ------------------------KPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASE------------LP  176 (227)
T ss_dssp             ------------------------CGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS------------CC
T ss_pred             ------------------------CccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHH------------HH
Confidence                                    11    2358888888876320   23468999999877643            24


Q ss_pred             HHHHhhcCCCcEEEEeeC
Q 047406          207 MRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~  224 (290)
                      ..+.++|+|||++++..+
T Consensus       177 ~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          177 EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEEc
Confidence            778999999999999754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.28  E-value=6.9e-12  Score=109.25  Aligned_cols=109  Identities=17%  Similarity=0.298  Sum_probs=85.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..+++.++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------  116 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-------------------------------  116 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            5778999999999999999998766 56999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC---C--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---P--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++..++.+...|+.+..+.   .  .++||+|++...         ......++.++.++|+
T Consensus       117 -----------------~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---------~~~~~~~l~~~~~~L~  170 (229)
T 2avd_A          117 -----------------AEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---------KENCSAYYERCLQLLR  170 (229)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---------STTHHHHHHHHHHHEE
T ss_pred             -----------------CCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---------HHHHHHHHHHHHHHcC
Confidence                             33344688888887552111   1  168999998543         2456788999999999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||++++....|
T Consensus       171 pgG~lv~~~~~~  182 (229)
T 2avd_A          171 PGGILAVLRVLW  182 (229)
T ss_dssp             EEEEEEEECCSG
T ss_pred             CCeEEEEECCCc
Confidence            999999965544

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.27  E-value=1.7e-11  Score=114.28  Aligned_cols=108  Identities=19%  Similarity=0.307  Sum_probs=84.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++..                               
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~-------------------------------   82 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVEL-------------------------------   82 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHH-------------------------------
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHH-------------------------------
Confidence            357899999999999999988875 55689999999 589999887665                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+++.+...|+.+ .+.+.++||+|+|..+...+.   ....+..++..+.++|+|||++
T Consensus        83 -----------------~~~~~~i~~~~~d~~~-~~~~~~~~D~Ivs~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~l  141 (328)
T 1g6q_1           83 -----------------NGFSDKITLLRGKLED-VHLPFPKVDIIISEWMGYFLL---YESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             -----------------TTCTTTEEEEESCTTT-SCCSSSCEEEEEECCCBTTBS---TTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cCCCCCEEEEECchhh-ccCCCCcccEEEEeCchhhcc---cHHHHHHHHHHHHhhcCCCeEE
Confidence                             4455568999999876 455557899999975432221   2345678999999999999999


Q ss_pred             EE
Q 047406          220 VL  221 (290)
Q Consensus       220 ~i  221 (290)
                      +.
T Consensus       142 i~  143 (328)
T 1g6q_1          142 FP  143 (328)
T ss_dssp             ES
T ss_pred             EE
Confidence            84

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.27  E-value=1e-11  Score=114.47  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=83.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~------------------------------  138 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS------------------------------  138 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------------------------------
Confidence            45689999999999999999887666799999999999999998764310                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      ..+ ..++.+...|..+..+...++||+|++.....|.... ..-....++.++.++|+|||++
T Consensus       139 ----------------~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l  201 (296)
T 1inl_A          139 ----------------CGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQG-GHLFTEEFYQACYDALKEDGVF  201 (296)
T ss_dssp             ----------------GGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEE
T ss_pred             ----------------cccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCch-hhhhHHHHHHHHHHhcCCCcEE
Confidence                            011 2358888888765333345789999985433222110 0001268899999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       202 v~~~~  206 (296)
T 1inl_A          202 SAETE  206 (296)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99743

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.27  E-value=1.2e-11  Score=107.83  Aligned_cols=99  Identities=22%  Similarity=0.321  Sum_probs=80.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++...  .+|+++|+|+.+++.|+.++..                                
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--------------------------------  114 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY--------------------------------  114 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT--------------------------------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhh--------------------------------
Confidence            577899999999999999999874  5899999999999999886543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+   ++.+...|+.+..+ ..++||+|++..+++++.            ..+.++|+|||+++
T Consensus       115 ----------------~~---~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~~------------~~~~~~L~pgG~l~  162 (231)
T 1vbf_A          115 ----------------YN---NIKLILGDGTLGYE-EEKPYDRVVVWATAPTLL------------CKPYEQLKEGGIMI  162 (231)
T ss_dssp             ----------------CS---SEEEEESCGGGCCG-GGCCEEEEEESSBBSSCC------------HHHHHTEEEEEEEE
T ss_pred             ----------------cC---CeEEEECCcccccc-cCCCccEEEECCcHHHHH------------HHHHHHcCCCcEEE
Confidence                            11   58888888876322 357899999999886442            36889999999999


Q ss_pred             EeeCC
Q 047406          221 LEPQP  225 (290)
Q Consensus       221 i~~~~  225 (290)
                      +..++
T Consensus       163 ~~~~~  167 (231)
T 1vbf_A          163 LPIGV  167 (231)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            97764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.27  E-value=7.1e-12  Score=110.73  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=85.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..++..++ ..+|+++|+|+.+++.|+.++..                               
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------------------------------  119 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK-------------------------------  119 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            4678999999999999999999876 56999999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCC--CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPE--KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~--~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++...+.+...|..+.   ++...  ++||+|++....         .....++.++.++|+
T Consensus       120 -----------------~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~---------~~~~~~l~~~~~~Lk  173 (232)
T 3cbg_A          120 -----------------AGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK---------RNYPRYYEIGLNLLR  173 (232)
T ss_dssp             -----------------HTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG---------GGHHHHHHHHHHTEE
T ss_pred             -----------------cCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH---------HHHHHHHHHHHHHcC
Confidence                             23334588888886542   11122  689999975442         456788999999999


Q ss_pred             CCcEEEEeeCCC
Q 047406          215 PGGIFVLEPQPW  226 (290)
Q Consensus       215 pgG~l~i~~~~~  226 (290)
                      |||++++....|
T Consensus       174 pgG~lv~~~~~~  185 (232)
T 3cbg_A          174 RGGLMVIDNVLW  185 (232)
T ss_dssp             EEEEEEEECTTG
T ss_pred             CCeEEEEeCCCc
Confidence            999999976544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.26  E-value=1.2e-11  Score=108.27  Aligned_cols=110  Identities=20%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCC------ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNC------RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~------~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      .+.++.+|||+|||+|.++..+++..+.      .+|+++|+++.+++.|+.++...+..                    
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--------------------  140 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS--------------------  140 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH--------------------
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc--------------------
Confidence            4567899999999999999999986653      58999999999999999887652100                    


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                              .-...++.+...|..+..+ ..++||+|++...++++            ..++.+.
T Consensus       141 ------------------------~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~------------~~~~~~~  183 (227)
T 1r18_A          141 ------------------------MLDSGQLLIVEGDGRKGYP-PNAPYNAIHVGAAAPDT------------PTELINQ  183 (227)
T ss_dssp             ------------------------HHHHTSEEEEESCGGGCCG-GGCSEEEEEECSCBSSC------------CHHHHHT
T ss_pred             ------------------------ccCCCceEEEECCcccCCC-cCCCccEEEECCchHHH------------HHHHHHH
Confidence                                    0001257888888876322 13689999998887543            2678999


Q ss_pred             cCCCcEEEEeeCC
Q 047406          213 LRPGGIFVLEPQP  225 (290)
Q Consensus       213 LkpgG~l~i~~~~  225 (290)
                      |+|||++++...+
T Consensus       184 LkpgG~lvi~~~~  196 (227)
T 1r18_A          184 LASGGRLIVPVGP  196 (227)
T ss_dssp             EEEEEEEEEEESC
T ss_pred             hcCCCEEEEEEec
Confidence            9999999997653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.25  E-value=2.7e-12  Score=114.58  Aligned_cols=44  Identities=30%  Similarity=0.522  Sum_probs=37.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|..+
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHh
Confidence            45789999999999999999887 445999999999999987663

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.25  E-value=2e-11  Score=118.76  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=81.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHH-------HHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADA-------YWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      +.++.+|||||||+|.++..+|+..++.+|+|+|+++.+++.|       +.++..                        
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~------------------------  295 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL------------------------  295 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH------------------------
Confidence            3578999999999999999999987777899999999999999       443332                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcC-cceeEeeccccc-CCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVH-GRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~-~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                              .++. .++.+..+|... ..+  ...++||+|++.+++  +     .+++...+.+
T Consensus       296 ------------------------~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~-----~~d~~~~L~e  344 (433)
T 1u2z_A          296 ------------------------YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL--F-----DEDLNKKVEK  344 (433)
T ss_dssp             ------------------------TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT--C-----CHHHHHHHHH
T ss_pred             ------------------------cCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc--c-----cccHHHHHHH
Confidence                                    2221 357787764332 111  123689999987665  1     1567788999


Q ss_pred             HHhhcCCCcEEEEe
Q 047406          209 IWKLLRPGGIFVLE  222 (290)
Q Consensus       209 ~~~~LkpgG~l~i~  222 (290)
                      +.+.|+|||.+++.
T Consensus       345 l~r~LKpGG~lVi~  358 (433)
T 1u2z_A          345 ILQTAKVGCKIISL  358 (433)
T ss_dssp             HHTTCCTTCEEEES
T ss_pred             HHHhCCCCeEEEEe
Confidence            99999999999995

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=2.4e-11  Score=110.40  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=86.2

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..+.++.+|||+|||+|.+++.+|+..+..+|+|+|+|+.+++.|+.++..                             
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~-----------------------------  165 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL-----------------------------  165 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH-----------------------------
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence            345678999999999999999999986666999999999999999998876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         +++. ++.+...|+.+. +. .+.||+|++....          +...++..+.+.|+|||
T Consensus       166 -------------------n~l~-~~~~~~~d~~~~-~~-~~~~D~Vi~d~p~----------~~~~~l~~~~~~LkpgG  213 (272)
T 3a27_A          166 -------------------NKLN-NVIPILADNRDV-EL-KDVADRVIMGYVH----------KTHKFLDKTFEFLKDRG  213 (272)
T ss_dssp             -------------------TTCS-SEEEEESCGGGC-CC-TTCEEEEEECCCS----------SGGGGHHHHHHHEEEEE
T ss_pred             -------------------cCCC-CEEEEECChHHc-Cc-cCCceEEEECCcc----------cHHHHHHHHHHHcCCCC
Confidence                               3333 477999998774 33 5689999986442          34567888999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      +++++..
T Consensus       214 ~l~~s~~  220 (272)
T 3a27_A          214 VIHYHET  220 (272)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.25  E-value=2.2e-11  Score=107.18  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=81.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.|+.++..                               
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~-------------------------------  136 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLER-------------------------------  136 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            35788999999999999999999876 6899999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++. ++.+...|+....+ ...+||+|++..+++++.            .++.+.|+|||++
T Consensus       137 -----------------~~~~-~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~~------------~~~~~~L~pgG~l  185 (235)
T 1jg1_A          137 -----------------AGVK-NVHVILGDGSKGFP-PKAPYDVIIVTAGAPKIP------------EPLIEQLKIGGKL  185 (235)
T ss_dssp             -----------------TTCC-SEEEEESCGGGCCG-GGCCEEEEEECSBBSSCC------------HHHHHTEEEEEEE
T ss_pred             -----------------cCCC-CcEEEECCcccCCC-CCCCccEEEECCcHHHHH------------HHHHHhcCCCcEE
Confidence                             2222 37888888733221 124599999988875431            3688999999999


Q ss_pred             EEeeCC
Q 047406          220 VLEPQP  225 (290)
Q Consensus       220 ~i~~~~  225 (290)
                      ++..++
T Consensus       186 vi~~~~  191 (235)
T 1jg1_A          186 IIPVGS  191 (235)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            997764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.24  E-value=1.5e-10  Score=109.57  Aligned_cols=107  Identities=11%  Similarity=0.012  Sum_probs=84.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+| |+|.++..++...+..+|+++|+|+.+++.|++++..                                
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~--------------------------------  217 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANE--------------------------------  217 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            3688999999 9999999998876556999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc-E
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG-I  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG-~  218 (290)
                                      .++. ++.+...|+.+.++. ..+.||+|++....++.       +...++.++.++|+||| +
T Consensus       218 ----------------~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-------~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          218 ----------------IGYE-DIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-------AIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             ----------------HTCC-CEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-------HHHHHHHHHHHTBCSTTCE
T ss_pred             ----------------cCCC-CEEEEEChhhhhchhhccCCccEEEECCCCchH-------HHHHHHHHHHHHcccCCeE
Confidence                            2333 589999998774442 34689999997654322       35889999999999999 4


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      ++++..
T Consensus       274 ~~~~~~  279 (373)
T 2qm3_A          274 GYFGIT  279 (373)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            466543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.24  E-value=5.2e-11  Score=106.85  Aligned_cols=107  Identities=14%  Similarity=0.241  Sum_probs=83.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..++... +..+|+++|+|+.+++.|+.++....                            
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----------------------------  148 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY----------------------------  148 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH----------------------------
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----------------------------
Confidence            4678899999999999999999864 45699999999999999999876510                            


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        ..+..++.+...|+.+. +.+.+.||+|++...           +...++.++.++|+|||+
T Consensus       149 ------------------g~~~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~-----------~~~~~l~~~~~~L~pgG~  198 (280)
T 1i9g_A          149 ------------------GQPPDNWRLVVSDLADS-ELPDGSVDRAVLDML-----------APWEVLDAVSRLLVAGGV  198 (280)
T ss_dssp             ------------------TSCCTTEEEECSCGGGC-CCCTTCEEEEEEESS-----------CGGGGHHHHHHHEEEEEE
T ss_pred             ------------------CCCCCcEEEEECchHhc-CCCCCceeEEEECCc-----------CHHHHHHHHHHhCCCCCE
Confidence                              01234688889998763 445678999998321           234678999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++..+
T Consensus       199 l~~~~~  204 (280)
T 1i9g_A          199 LMVYVA  204 (280)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            999765

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.24  E-value=2.4e-11  Score=114.08  Aligned_cols=107  Identities=22%  Similarity=0.361  Sum_probs=83.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+.++..                                
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--------------------------------   94 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKS--------------------------------   94 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHH--------------------------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHH--------------------------------
Confidence            57899999999999999998875 556999999996 77888877654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++.+++.+...|+.+ .+.+ ++||+|+|..+.+++    ..+.....+.++.++|+|||+++
T Consensus        95 ----------------~~l~~~v~~~~~d~~~-~~~~-~~~D~Ivs~~~~~~~----~~~~~~~~l~~~~~~LkpgG~li  152 (348)
T 2y1w_A           95 ----------------NNLTDRIVVIPGKVEE-VSLP-EQVDIIISEPMGYML----FNERMLESYLHAKKYLKPSGNMF  152 (348)
T ss_dssp             ----------------TTCTTTEEEEESCTTT-CCCS-SCEEEEEECCCBTTB----TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ----------------cCCCCcEEEEEcchhh-CCCC-CceeEEEEeCchhcC----ChHHHHHHHHHHHhhcCCCeEEE
Confidence                            3444578999999876 3333 689999998765322    23556778888999999999999


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       153 ~~~  155 (348)
T 2y1w_A          153 PTI  155 (348)
T ss_dssp             SCE
T ss_pred             Eec
Confidence            753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.24  E-value=1.5e-11  Score=113.97  Aligned_cols=137  Identities=11%  Similarity=0.113  Sum_probs=91.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------------------------------  143 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA------------------------------  143 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh------------------------------
Confidence            46789999999999999999987666799999999999999998765310                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++ ..++.+...|..+.++...++||+|++....++.. . .......++.++.++|+|||++
T Consensus       144 ----------------~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~-~-~~l~~~~~l~~~~~~LkpgG~l  205 (304)
T 2o07_A          144 ----------------IGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP-A-ESLFKESYYQLMKTALKEDGVL  205 (304)
T ss_dssp             ----------------GGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-------------CHHHHHHHHHEEEEEEE
T ss_pred             ----------------cccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCc-c-hhhhHHHHHHHHHhccCCCeEE
Confidence                            111 23588888887653333457899999854432110 0 0011257899999999999999


Q ss_pred             EEee-CCCchhhhhhhhhhhhhccccc
Q 047406          220 VLEP-QPWVSYEKNRRVSETTATNFQN  245 (290)
Q Consensus       220 ~i~~-~~~~~~~~~~~~~~~~~~~~~~  245 (290)
                      ++.. .+|........+...+...|.+
T Consensus       206 v~~~~~~~~~~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          206 CCQGECQWLHLDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             EEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             EEecCCcccchHHHHHHHHHHHHhCCC
Confidence            9975 4554332223333334433433

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.23  E-value=2e-11  Score=111.36  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +.+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~------------------------------  123 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA------------------------------  123 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhc------------------------------
Confidence            46789999999999999999886566799999999999999999764310                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG  217 (290)
                                      .++ ..++.+...|..+.++...++||+|++....++.    ....  ...++..+.++|+|||
T Consensus       124 ----------------~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~----~~~~l~~~~~~~~~~~~L~pgG  183 (275)
T 1iy9_A          124 ----------------GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVG----PAVNLFTKGFYAGIAKALKEDG  183 (275)
T ss_dssp             ----------------TTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCS----CCCCCSTTHHHHHHHHHEEEEE
T ss_pred             ----------------cccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCC----cchhhhHHHHHHHHHHhcCCCc
Confidence                            011 2368899999766333345789999995432211    1111  2578999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       184 ~lv~~~~  190 (275)
T 1iy9_A          184 IFVAQTD  190 (275)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.23  E-value=9.7e-11  Score=111.11  Aligned_cols=133  Identities=19%  Similarity=0.206  Sum_probs=94.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|+.++..                               
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~-------------------------------  263 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA-------------------------------  263 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence            6788999999999999999998875444899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhh-hhhcCCchH-HHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKW-IHLNWGDDG-LITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~-~~l~~~~~~-~~~~l~~~~~~LkpgG  217 (290)
                                       .++.+.+.+.+.|+.+ ++.+.++||+|+|+..... +.-...... ...++..+.++| +|+
T Consensus       264 -----------------~gl~~~i~~~~~D~~~-~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~  324 (373)
T 3tm4_A          264 -----------------AGVLDKIKFIQGDATQ-LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKR  324 (373)
T ss_dssp             -----------------TTCGGGCEEEECCGGG-GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEE
T ss_pred             -----------------cCCCCceEEEECChhh-CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCe
Confidence                             3444568999999977 4555678999999644210 000000112 267888888888 444


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      .+++..                         .++.+.+ .+.+.||+..+.
T Consensus       325 ~~~i~~-------------------------~~~~~~~-~~~~~G~~~~~~  349 (373)
T 3tm4_A          325 GVFITT-------------------------EKKAIEE-AIAENGFEIIHH  349 (373)
T ss_dssp             EEEEES-------------------------CHHHHHH-HHHHTTEEEEEE
T ss_pred             EEEEEC-------------------------CHHHHHH-HHHHcCCEEEEE
Confidence            444432                         1233433 678899997764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.22  E-value=1.6e-11  Score=104.68  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDS   96 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~   96 (290)
                      +.++.+|||+|||+|.++..+++.++  ..+|+|+|+|+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            45788999999999999999999877  57999999998

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.22  E-value=6e-11  Score=121.61  Aligned_cols=117  Identities=20%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ...+|.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+.++..                              
T Consensus       536 ~~~~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~------------------------------  584 (703)
T 3v97_A          536 QMSKGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRL------------------------------  584 (703)
T ss_dssp             HHCTTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             HhcCCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            3468999999999999999998774 455799999999999999999876                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCCCCCCceeEEEEchhhh-----hhhhcCCchHHHHHHHHHHhh
Q 047406          139 TAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDSPEKYYDAILCLSVTK-----WIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~-----~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                        +++. .++.+.+.|..+.++...++||+|++..-..     .....-...+...++..+.++
T Consensus       585 ------------------ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~  646 (703)
T 3v97_A          585 ------------------NGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRL  646 (703)
T ss_dssp             ------------------TTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHH
T ss_pred             ------------------cCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHh
Confidence                              4444 4689999998763333457899999853210     000000124667899999999


Q ss_pred             cCCCcEEEEeeC
Q 047406          213 LRPGGIFVLEPQ  224 (290)
Q Consensus       213 LkpgG~l~i~~~  224 (290)
                      |+|||+|+++..
T Consensus       647 LkpgG~L~~s~~  658 (703)
T 3v97_A          647 LRAGGTIMFSNN  658 (703)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEC
Confidence            999999999765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.21  E-value=1.2e-10  Score=102.23  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|+.+...                                
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--------------------------------  135 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKK--------------------------------  135 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHH--------------------------------
Confidence            47889999999999999999987  56999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+.. .+...||+|++..           .+...++.++.++|+|||.++
T Consensus       136 ----------------~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~-----------~~~~~~l~~~~~~L~~gG~l~  187 (248)
T 2yvl_A          136 ----------------FNLGKNVKFFNVDFKDAE-VPEGIFHAAFVDV-----------REPWHYLEKVHKSLMEGAPVG  187 (248)
T ss_dssp             ----------------TTCCTTEEEECSCTTTSC-CCTTCBSEEEECS-----------SCGGGGHHHHHHHBCTTCEEE
T ss_pred             ----------------cCCCCcEEEEEcChhhcc-cCCCcccEEEECC-----------cCHHHHHHHHHHHcCCCCEEE
Confidence                            233346888888887632 1346899999732           233567899999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +..+
T Consensus       188 ~~~~  191 (248)
T 2yvl_A          188 FLLP  191 (248)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9776

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.20  E-value=2.1e-11  Score=111.50  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~------------------------------  126 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS------------------------------  126 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS------------------------------
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhc------------------------------
Confidence            46789999999999999999887666799999999999999998653200                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG  217 (290)
                                      .++ ..++.+...|..+..+...++||+|++.....+..    ...+  ..++..+.++|+|||
T Consensus       127 ----------------~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG  186 (283)
T 2i7c_A          127 ----------------CGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGP----AETLFNQNFYEKIYNALKPNG  186 (283)
T ss_dssp             ----------------GGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTG----GGGGSSHHHHHHHHHHEEEEE
T ss_pred             ----------------cccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCc----chhhhHHHHHHHHHHhcCCCc
Confidence                            011 23588888887653222357899999954432211    1233  689999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       187 ~lv~~~~  193 (283)
T 2i7c_A          187 YCVAQCE  193 (283)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999754

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.20  E-value=6.5e-11  Score=107.38  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..+++.++. .+|+++|+|+.+++.++.++..                               
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~-------------------------------  130 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR-------------------------------  130 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH-------------------------------
Confidence            57899999999999999999987765 6999999999999999998775                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC----CCCceeEEEEchhhhh---hh--hcCC-------chHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS----PEKYYDAILCLSVTKW---IH--LNWG-------DDGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~fD~I~~~~vl~~---~~--l~~~-------~~~~~  203 (290)
                                       .++. ++.+...|+.+. +.    ..+.||+|++......   ++  -.|.       ...+.
T Consensus       131 -----------------~g~~-~v~~~~~D~~~~-~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~  191 (274)
T 3ajd_A          131 -----------------MGVL-NTIIINADMRKY-KDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQK  191 (274)
T ss_dssp             -----------------TTCC-SEEEEESCHHHH-HHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHH
T ss_pred             -----------------hCCC-cEEEEeCChHhc-chhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHH
Confidence                             2232 578888887652 11    2468999998622110   00  0000       13457


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .++..+.++|+|||+++++..
T Consensus       192 ~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          192 ELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             HHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHhCCCCCEEEEEEC
Confidence            899999999999999999754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.20  E-value=1.8e-11  Score=114.22  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=84.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...                               
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~-------------------------------  163 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI-------------------------------  163 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT-------------------------------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh-------------------------------
Confidence            4678999999999999999988766679999999999999999865320                               


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG  217 (290)
                                     ..++ ..++.+...|..+..+...++||+|++.....+-    ....+  ..++.++.++|+|||
T Consensus       164 ---------------~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG  224 (321)
T 2pt6_A          164 ---------------SCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIG----PAETLFNQNFYEKIYNALKPNG  224 (321)
T ss_dssp             ---------------SGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSS----GGGGGSSHHHHHHHHHHEEEEE
T ss_pred             ---------------ccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCC----cchhhhHHHHHHHHHHhcCCCc
Confidence                           0011 2358899998765322235789999986432211    01222  689999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       225 ~lv~~~~  231 (321)
T 2pt6_A          225 YCVAQCE  231 (321)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.20  E-value=3.3e-11  Score=113.26  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=86.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~------------------------------  168 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA------------------------------  168 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------------------------------
Confidence            46689999999999999999987666799999999999999999765410                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg  216 (290)
                                      .++ ..++.+...|+.+.++ .+.++||+|++.....+.+    .+.  ...++.++.++|+||
T Consensus       169 ----------------~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~----~~~l~~~~~l~~~~~~Lkpg  228 (334)
T 1xj5_A          169 ----------------IGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGP----AKELFEKPFFQSVARALRPG  228 (334)
T ss_dssp             ----------------GGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSG----GGGGGSHHHHHHHHHHEEEE
T ss_pred             ----------------cccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCc----chhhhHHHHHHHHHHhcCCC
Confidence                            011 2358899999765322 2347899999954422111    112  378999999999999


Q ss_pred             cEEEEe-eCCCch
Q 047406          217 GIFVLE-PQPWVS  228 (290)
Q Consensus       217 G~l~i~-~~~~~~  228 (290)
                      |++++. ..+|..
T Consensus       229 G~lv~~~~~~~~~  241 (334)
T 1xj5_A          229 GVVCTQAESLWLH  241 (334)
T ss_dssp             EEEEEECCCTTTC
T ss_pred             cEEEEecCCcccc
Confidence            999996 444543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.19  E-value=1.7e-11  Score=114.27  Aligned_cols=114  Identities=15%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++...                               
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~-------------------------------  155 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM-------------------------------  155 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT-------------------------------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence            4568999999999999999998766679999999999999999865320                               


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG  217 (290)
                                     ..++ ..++.+...|..+.++...++||+|++....++ .   ....+  ..++.++.++|+|||
T Consensus       156 ---------------~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~-~---~~~~l~t~~~l~~~~~~LkpgG  216 (314)
T 2b2c_A          156 ---------------SCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV-G---PAESLFGQSYYELLRDALKEDG  216 (314)
T ss_dssp             ---------------SGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------------HHHHHHHHEEEEE
T ss_pred             ---------------ccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC-C---cchhhhHHHHHHHHHhhcCCCe
Confidence                           0011 235888888876532224578999998553221 1   11222  689999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++...
T Consensus       217 ~lv~~~~  223 (314)
T 2b2c_A          217 ILSSQGE  223 (314)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999753

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.19  E-value=5.7e-11  Score=111.43  Aligned_cols=114  Identities=13%  Similarity=0.016  Sum_probs=82.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.++.. +. +|+++|+|+.+++.|+.++..                                
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~-ga-~V~~VD~s~~al~~a~~n~~~--------------------------------  197 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA-GA-EVTHVDASKKAIGWAKENQVL--------------------------------  197 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCcEEEcccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            36789999999999999998885 33 999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCC---CCCceeEEEEchhhhhhh----hcCCchHHHHHHHHHHhh
Q 047406          141 AQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIH----LNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~----l~~~~~~~~~~l~~~~~~  212 (290)
                                      .++.. .+.+.+.|+.+..+.   ....||+|++..-..-..    +.-..++...++..+.++
T Consensus       198 ----------------~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~  261 (332)
T 2igt_A          198 ----------------AGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREI  261 (332)
T ss_dssp             ----------------HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHT
T ss_pred             ----------------cCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHh
Confidence                            23332 488898887663211   146899999942210000    000014567899999999


Q ss_pred             cCCCcEEEEeeC
Q 047406          213 LRPGGIFVLEPQ  224 (290)
Q Consensus       213 LkpgG~l~i~~~  224 (290)
                      |+|||++++...
T Consensus       262 LkpgG~lli~~~  273 (332)
T 2igt_A          262 LSPKALGLVLTA  273 (332)
T ss_dssp             BCTTCCEEEEEE
T ss_pred             cCcCcEEEEEEC
Confidence            999999888643

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.19  E-value=5.7e-11  Score=109.23  Aligned_cols=149  Identities=18%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             CcEEEecCCC--ChhhHHHHh-HcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           64 KDCLDIGCNS--GIITIQIAQ-KFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        64 ~~vLDiGcG~--G~~~~~la~-~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++||||||.  +..+..+++ ..|..+|+++|.|+.+++.|+..+..                                
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~--------------------------------  127 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS--------------------------------  127 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC--------------------------------
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc--------------------------------
Confidence            5899999997  334444454 45778999999999999999886432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCC--CCcee-----EEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSP--EKYYD-----AILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~--~~~fD-----~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                      . ...++.|.+.|+.+.   +..+  ...||     .|+++.+|||+.   +.+....++.++.
T Consensus       128 ----------------~-~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~---d~~~p~~~l~~l~  187 (277)
T 3giw_A          128 ----------------T-PEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVL---DEDDAVGIVRRLL  187 (277)
T ss_dssp             ----------------C-SSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSC---GGGCHHHHHHHHH
T ss_pred             ----------------C-CCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCC---chhhHHHHHHHHH
Confidence                            1 123588999998762   0111  13344     688999999985   1223689999999


Q ss_pred             hhcCCCcEEEEeeCCCch-hhhhhhhhhhhhccccccccCc-hhHHHHHHHHcCCeeeE
Q 047406          211 KLLRPGGIFVLEPQPWVS-YEKNRRVSETTATNFQNIKLYP-KEFQEILLDKIGFRTVE  267 (290)
Q Consensus       211 ~~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~Gf~~v~  267 (290)
                      +.|+|||+|++++..-.. ......+.+.....-..+.+++ +++.+ ++.  ||++++
T Consensus       188 ~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~-~f~--Glelve  243 (277)
T 3giw_A          188 EPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEE-FFE--GLELVE  243 (277)
T ss_dssp             TTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHH-TTT--TSEECT
T ss_pred             HhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHH-HhC--CCcccC
Confidence            999999999997542211 1111122222222111233444 55554 664  998654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.19  E-value=1.7e-11  Score=111.93  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++ ...                     .++    .+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~---------------------~~l----~~  126 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KID---------------------NGL----LE  126 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTT---------------------TTH----HH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhc---------------------ccc----cc
Confidence            46789999999999999999887 7679999999999999999865 210                     000    00


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~  218 (290)
                      +.             ..+...++.+...|..+.++. .++||+|++....++.    ....  ...++..+.++|+|||+
T Consensus       127 ~~-------------~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~----~~~~l~~~~~l~~~~~~L~pgG~  188 (281)
T 1mjf_A          127 AM-------------LNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGI  188 (281)
T ss_dssp             HH-------------HTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEE
T ss_pred             cc-------------ccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCC----cchhhhHHHHHHHHHHhcCCCcE
Confidence            00             000123588888887553222 4689999986543211    1122  26789999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       189 lv~~~  193 (281)
T 1mjf_A          189 YVTQA  193 (281)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99964

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.18  E-value=6.3e-11  Score=113.27  Aligned_cols=108  Identities=23%  Similarity=0.275  Sum_probs=82.7

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ...+|++|||||||+|.+++..|+ .++.+|+|+|.|+ +++.|++.++.                              
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~------------------------------  127 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRF------------------------------  127 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHH------------------------------
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHH------------------------------
Confidence            346899999999999999887665 4566999999986 78888887765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        +++.+.|.+...+..+ +..+ .++|+|+|-..-..+   .....+..++....++|+|||+
T Consensus       128 ------------------n~~~~~i~~i~~~~~~-~~lp-e~~DvivsE~~~~~l---~~e~~l~~~l~a~~r~Lkp~G~  184 (376)
T 4hc4_A          128 ------------------NGLEDRVHVLPGPVET-VELP-EQVDAIVSEWMGYGL---LHESMLSSVLHARTKWLKEGGL  184 (376)
T ss_dssp             ------------------TTCTTTEEEEESCTTT-CCCS-SCEEEEECCCCBTTB---TTTCSHHHHHHHHHHHEEEEEE
T ss_pred             ------------------cCCCceEEEEeeeeee-ecCC-ccccEEEeecccccc---cccchhhhHHHHHHhhCCCCce
Confidence                              6677789999999876 3444 689999983222111   1234567888888999999999


Q ss_pred             EEE
Q 047406          219 FVL  221 (290)
Q Consensus       219 l~i  221 (290)
                      ++-
T Consensus       185 ~iP  187 (376)
T 4hc4_A          185 LLP  187 (376)
T ss_dssp             EES
T ss_pred             ECC
Confidence            876

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.18  E-value=1.3e-10  Score=110.78  Aligned_cols=115  Identities=12%  Similarity=0.071  Sum_probs=84.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.+|.. +..+|+++|+|+.+++.|+.++..                                
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~--------------------------------  257 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEA--------------------------------  257 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHH--------------------------------
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            67899999999999999998875 345899999999999999999876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCC---CCCceeEEEEchhhhh---hhhcCCchHHHHHHHHHHhhc
Q 047406          141 AQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDS---PEKYYDAILCLSVTKW---IHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~---~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                      +++.. ++.|.+.|+.+.++.   ...+||+|++.....-   -...-.......++..+.++|
T Consensus       258 ----------------n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L  321 (385)
T 2b78_A          258 ----------------NHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEIL  321 (385)
T ss_dssp             ----------------TTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTE
T ss_pred             ----------------cCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhc
Confidence                            44443 688999997653221   2358999998432200   000001134567888999999


Q ss_pred             CCCcEEEEeeC
Q 047406          214 RPGGIFVLEPQ  224 (290)
Q Consensus       214 kpgG~l~i~~~  224 (290)
                      +|||+++++..
T Consensus       322 ~pgG~l~~~~~  332 (385)
T 2b78_A          322 SENGLIIASTN  332 (385)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCcEEEEEeC
Confidence            99999999754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.17  E-value=7.2e-11  Score=96.75  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||+|||+|.++..+++.+ +..+++++|+|+ +++.                                     
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------------------------------   61 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------------------------------   61 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------------------------------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------------------------------
Confidence            4578899999999999999999885 447999999988 5321                                     


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--------CCCCceeEEEEchhhhhhhhcCCchH------HHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--------SPEKYYDAILCLSVTKWIHLNWGDDG------LIT  204 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~fD~I~~~~vl~~~~l~~~~~~------~~~  204 (290)
                                            .++.+...|+.+. +        .+.++||+|++...++|.... ..+.      ...
T Consensus        62 ----------------------~~~~~~~~d~~~~-~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~-~~~~~~~~~~~~~  117 (180)
T 1ej0_A           62 ----------------------VGVDFLQGDFRDE-LVMKALLERVGDSKVQVVMSDMAPNMSGTP-AVDIPRAMYLVEL  117 (180)
T ss_dssp             ----------------------TTEEEEESCTTSH-HHHHHHHHHHTTCCEEEEEECCCCCCCSCH-HHHHHHHHHHHHH
T ss_pred             ----------------------CcEEEEEcccccc-hhhhhhhccCCCCceeEEEECCCccccCCC-ccchHHHHHHHHH
Confidence                                  1467778887652 2        345789999998776543210 0011      168


Q ss_pred             HHHHHHhhcCCCcEEEEee
Q 047406          205 LFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~  223 (290)
                      ++.++.++|+|||.+++..
T Consensus       118 ~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A          118 ALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEEE
Confidence            8999999999999999964

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.15  E-value=9.9e-12  Score=104.29  Aligned_cols=116  Identities=16%  Similarity=0.064  Sum_probs=82.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||+|||.                +++|+|+.+++.|++....                               
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~-------------------------------   42 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN-------------------------------   42 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT-------------------------------
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc-------------------------------
Confidence            46889999999986                2389999999999874211                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                            .+.+.+.|+.+ ++.   ++++||+|+|..+++|+.     .+...++.++.++|+||
T Consensus        43 ----------------------~~~~~~~d~~~-~~~~~~~~~~fD~V~~~~~l~~~~-----~~~~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           43 ----------------------EGRVSVENIKQ-LLQSAHKESSFDIILSGLVPGSTT-----LHSAEILAEIARILRPG   94 (176)
T ss_dssp             ----------------------TSEEEEEEGGG-GGGGCCCSSCEEEEEECCSTTCCC-----CCCHHHHHHHHHHEEEE
T ss_pred             ----------------------CcEEEEechhc-CccccCCCCCEeEEEECChhhhcc-----cCHHHHHHHHHHHCCCC
Confidence                                  26778888765 343   568899999999997661     24588999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCC
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGF  263 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf  263 (290)
                      |++++..+.....          ..  .......+++.. +++++||
T Consensus        95 G~l~~~~~~~~~~----------~~--~~~~~~~~~~~~-~l~~aGf  128 (176)
T 2ld4_A           95 GCLFLKEPVETAV----------DN--NSKVKTASKLCS-ALTLSGL  128 (176)
T ss_dssp             EEEEEEEEEESSS----------CS--SSSSCCHHHHHH-HHHHTTC
T ss_pred             EEEEEEccccccc----------cc--ccccCCHHHHHH-HHHHCCC
Confidence            9999964311100          00  011123455555 7899999

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.15  E-value=3.2e-10  Score=104.25  Aligned_cols=106  Identities=15%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.....+|.+|||+|||+|.+++.+|.. +..+|+++|+||.+++.++.|+..                           
T Consensus       119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~---------------------------  170 (278)
T 3k6r_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHL---------------------------  170 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHhcCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHH---------------------------
Confidence            3445678999999999999999998876 456899999999999999999887                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                           +++.+.+.+..+|..+.  .+.+.||.|++....          ....++..+.++|+|
T Consensus       171 ---------------------N~v~~~v~~~~~D~~~~--~~~~~~D~Vi~~~p~----------~~~~~l~~a~~~lk~  217 (278)
T 3k6r_A          171 ---------------------NKVEDRMSAYNMDNRDF--PGENIADRILMGYVV----------RTHEFIPKALSIAKD  217 (278)
T ss_dssp             ---------------------TTCTTTEEEECSCTTTC--CCCSCEEEEEECCCS----------SGGGGHHHHHHHEEE
T ss_pred             ---------------------cCCCCcEEEEeCcHHHh--ccccCCCEEEECCCC----------cHHHHHHHHHHHcCC
Confidence                                 56667799999998763  235789999875321          123456778899999


Q ss_pred             CcEEEEe
Q 047406          216 GGIFVLE  222 (290)
Q Consensus       216 gG~l~i~  222 (290)
                      ||++.+.
T Consensus       218 gG~ih~~  224 (278)
T 3k6r_A          218 GAIIHYH  224 (278)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEE
Confidence            9998763

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.14  E-value=4.1e-11  Score=111.24  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++....                              
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------------------------------  125 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH------------------------------  125 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------------------------------
Confidence            46789999999999999999887666799999999999999998764310                              


Q ss_pred             HHHHHHhhhcCCCccccC-c-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERN-L-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg  216 (290)
                                      .+ + ..++.+...|..+.++...++||+|++....++. .......  ...++..+.++|+||
T Consensus       126 ----------------~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~-~~~~~~~l~~~~~l~~~~~~Lkpg  188 (314)
T 1uir_A          126 ----------------QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVG-EDNPARLLYTVEFYRLVKAHLNPG  188 (314)
T ss_dssp             ----------------TTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBS-TTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             ----------------cccccCCceEEEEchHHHHHHhcCCCccEEEECCCCccc-ccCcchhccHHHHHHHHHHhcCCC
Confidence                            01 1 2358888888766333345789999997554320 0000112  368899999999999


Q ss_pred             cEEEEee
Q 047406          217 GIFVLEP  223 (290)
Q Consensus       217 G~l~i~~  223 (290)
                      |++++..
T Consensus       189 G~lv~~~  195 (314)
T 1uir_A          189 GVMGMQT  195 (314)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEc
Confidence            9999964

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.14  E-value=1.6e-10  Score=113.26  Aligned_cols=115  Identities=19%  Similarity=0.290  Sum_probs=84.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..+|+.++. ..|+++|+|+.+++.++.++..                               
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r-------------------------------  148 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER-------------------------------  148 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            57899999999999999999988764 5899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc------hhhhh---hhhcCCch-------HHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL------SVTKW---IHLNWGDD-------GLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~------~vl~~---~~l~~~~~-------~~~  203 (290)
                                       .++.  +.+...|..+......+.||+|++.      .++..   ....|..+       .+.
T Consensus       149 -----------------~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~  209 (464)
T 3m6w_A          149 -----------------WGAP--LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQK  209 (464)
T ss_dssp             -----------------HCCC--CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHH
T ss_pred             -----------------cCCe--EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHH
Confidence                             2333  6777777655211134689999962      11110   00011222       237


Q ss_pred             HHHHHHHhhcCCCcEEEEeeCC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      .++..+.++|+|||+|++++-.
T Consensus       210 ~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          210 ALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             HHHHHHHTTEEEEEEEEEEESC
T ss_pred             HHHHHHHHhcCCCcEEEEEecc
Confidence            8999999999999999997643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.14  E-value=5e-10  Score=95.88  Aligned_cols=100  Identities=10%  Similarity=0.166  Sum_probs=75.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+.++..                                
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   94 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGE--------------------------------   94 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGG--------------------------------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            46789999999999999998886 344899999999999999987543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++  ++.+.+.|+.+ .   +..||+|++....++..    ......+++.+.+++  |++++
T Consensus        95 ----------------~~~--~~~~~~~d~~~-~---~~~~D~v~~~~p~~~~~----~~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A           95 ----------------FKG--KFKVFIGDVSE-F---NSRVDIVIMNPPFGSQR----KHADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             ----------------GTT--SEEEEESCGGG-C---CCCCSEEEECCCCSSSS----TTTTHHHHHHHHHHC--SEEEE
T ss_pred             ----------------cCC--CEEEEECchHH-c---CCCCCEEEEcCCCcccc----CCchHHHHHHHHHhc--CcEEE
Confidence                            223  58899999876 2   24899999987654321    123357788888888  55444


Q ss_pred             E
Q 047406          221 L  221 (290)
Q Consensus       221 i  221 (290)
                      +
T Consensus       147 ~  147 (207)
T 1wy7_A          147 I  147 (207)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.14  E-value=1.9e-10  Score=112.53  Aligned_cols=115  Identities=12%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      .++.+|||+|||+|..+..+|+.+++ ..|+++|+|+.+++.++.++...                              
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~------------------------------  153 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW------------------------------  153 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence            57899999999999999999988764 58999999999999999998762                              


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchh------hhh---hhhcCCc-------hHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSV------TKW---IHLNWGD-------DGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v------l~~---~~l~~~~-------~~~~  203 (290)
                                        ++. ++.+...|..+......+.||+|++..-      +..   ....|..       ..+.
T Consensus       154 ------------------g~~-nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~  214 (456)
T 3m4x_A          154 ------------------GVS-NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQ  214 (456)
T ss_dssp             ------------------TCS-SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHH
T ss_pred             ------------------CCC-ceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHH
Confidence                              232 4778888875521112478999998321      100   0000111       2235


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .++..+.++|+|||+|++++-
T Consensus       215 ~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          215 EILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             HHHHHHHHTEEEEEEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEEEe
Confidence            889999999999999999654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.13  E-value=2.8e-11  Score=107.72  Aligned_cols=100  Identities=15%  Similarity=0.149  Sum_probs=76.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhH----cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQK----FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      .++.+|||||||+|..+..+++.    .+..+|+|+|+|+.+++.|+.                                
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------------------------------  127 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------------------------------  127 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------------------------------
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------------------------------
Confidence            35689999999999999999987    456799999999988766641                                


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCC-CceeEEEEchhhhhhhhcCCchHHHHHHHHHHh-h
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPE-KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK-L  212 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~-~  212 (290)
                                            +..++.+.++|..+.  ++... .+||+|++...    |     .....++.++.+ +
T Consensus       128 ----------------------~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~----~-----~~~~~~l~~~~r~~  176 (236)
T 2bm8_A          128 ----------------------DMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA----H-----ANTFNIMKWAVDHL  176 (236)
T ss_dssp             ----------------------GCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS----C-----SSHHHHHHHHHHHT
T ss_pred             ----------------------cCCceEEEECcchhHHHHHhhccCCCCEEEECCc----h-----HhHHHHHHHHHHhh
Confidence                                  123588889988663  23222 37999997544    1     245678999997 9


Q ss_pred             cCCCcEEEEee
Q 047406          213 LRPGGIFVLEP  223 (290)
Q Consensus       213 LkpgG~l~i~~  223 (290)
                      |+|||++++..
T Consensus       177 LkpGG~lv~~d  187 (236)
T 2bm8_A          177 LEEGDYFIIED  187 (236)
T ss_dssp             CCTTCEEEECS
T ss_pred             CCCCCEEEEEe
Confidence            99999999964

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.12  E-value=9.3e-10  Score=106.90  Aligned_cols=116  Identities=17%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..++.+|||+|||+|..+..+++.++. .+|+++|+|+.+++.++.++..                              
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~------------------------------  306 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR------------------------------  306 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence            357889999999999999999998765 6899999999999999998775                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEc------hhhhhh---hhcCCchH-------
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCL------SVTKWI---HLNWGDDG-------  201 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~------~vl~~~---~l~~~~~~-------  201 (290)
                                        .++ .++.+...|+.+..+ .+.+.||+|++.      .+++..   ...+..++       
T Consensus       307 ------------------~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~  367 (450)
T 2yxl_A          307 ------------------MGI-KIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQL  367 (450)
T ss_dssp             ------------------TTC-CSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHH
T ss_pred             ------------------cCC-CcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHH
Confidence                              223 247888888866321 233679999962      222100   00011122       


Q ss_pred             HHHHHHHHHhhcCCCcEEEEeeC
Q 047406          202 LITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       202 ~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      +..++.++.++|+|||++++++.
T Consensus       368 q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          368 QRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEES
T ss_pred             HHHHHHHHHHhcCCCcEEEEEeC
Confidence            26889999999999999998654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.12  E-value=5.8e-10  Score=101.96  Aligned_cols=142  Identities=13%  Similarity=0.065  Sum_probs=99.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+..+|||||||+|.++..++...+...++++|+|+.+++.++.++..                               
T Consensus       130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~-------------------------------  178 (281)
T 3lcv_B          130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR-------------------------------  178 (281)
T ss_dssp             SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh-------------------------------
Confidence            3557899999999999999998887888999999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++  ...+...|+...  .+.++||+++++-+++++.    ++.....+ ++...|+|+|++
T Consensus       179 -----------------~g~--~~~~~v~D~~~~--~p~~~~DvaL~lkti~~Le----~q~kg~g~-~ll~aL~~~~vv  232 (281)
T 3lcv_B          179 -----------------LNV--PHRTNVADLLED--RLDEPADVTLLLKTLPCLE----TQQRGSGW-EVIDIVNSPNIV  232 (281)
T ss_dssp             -----------------TTC--CEEEEECCTTTS--CCCSCCSEEEETTCHHHHH----HHSTTHHH-HHHHHSSCSEEE
T ss_pred             -----------------cCC--CceEEEeeeccc--CCCCCcchHHHHHHHHHhh----hhhhHHHH-HHHHHhCCCCEE
Confidence                             233  267788888763  3668899999999987652    12223455 899999999988


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +--+.  .+.....         -.....+...|.+ .+...|..+.+...
T Consensus       233 VSfp~--ksl~Grs---------~gm~~~Y~~~~e~-~~~~~g~~~~~~~~  271 (281)
T 3lcv_B          233 VTFPT--KSLGQRS---------KGMFQNYSQSFES-QARERSCRIQRLEI  271 (281)
T ss_dssp             EEEEC--C----------------CHHHHHHHHHHH-HHHHHTCCEEEEEE
T ss_pred             Eeccc--hhhcCCC---------cchhhHHHHHHHH-HHHhcCCceeeeee
Confidence            87443  1111110         0111234455555 66778886555433

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.12  E-value=7.9e-11  Score=110.21  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||||||+|.++..+++.++..+|+++|+|+.+++.|++++..                                   
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~-----------------------------------  135 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI-----------------------------------  135 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC-----------------------------------
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc-----------------------------------
Confidence            399999999999999999988888999999999999999986421                                   


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEE
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~  220 (290)
                                    ....++.+...|..+.+. .+.++||+|++....++.    ....+  ..++..+.++|+|||+++
T Consensus       136 --------------~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~----~~~~L~t~efl~~~~r~LkpgGvlv  197 (317)
T 3gjy_A          136 --------------PRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAI----TPQNFTTVEFFEHCHRGLAPGGLYV  197 (317)
T ss_dssp             --------------CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSC----CCGGGSBHHHHHHHHHHEEEEEEEE
T ss_pred             --------------cCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccc----cchhhhHHHHHHHHHHhcCCCcEEE
Confidence                          012368899999766322 245789999985433211    11222  688999999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       198 ~~~~  201 (317)
T 3gjy_A          198 ANCG  201 (317)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.11  E-value=3.2e-10  Score=108.03  Aligned_cols=113  Identities=18%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+.++..                                 
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~---------------------------------  262 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKL---------------------------------  262 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence            8899999999999999999885 456899999999999999998876                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHhhcCC
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                     +++..++.+...|+.+..+.   ...+||+|++.....   .-++.-...+...++.++.++|+|
T Consensus       263 ---------------n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  327 (396)
T 2as0_A          263 ---------------NGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD  327 (396)
T ss_dssp             ---------------TTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE
T ss_pred             ---------------cCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                           34444688999987653211   246899999843210   000000014567899999999999


Q ss_pred             CcEEEEee
Q 047406          216 GGIFVLEP  223 (290)
Q Consensus       216 gG~l~i~~  223 (290)
                      ||++++..
T Consensus       328 gG~lv~~~  335 (396)
T 2as0_A          328 GGILVTCS  335 (396)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99988864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.11  E-value=5.1e-10  Score=95.65  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+.++.                                 
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------------------------------   95 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------------------------------   95 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------------------------------
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------------------------------
Confidence            47789999999999999998876 55579999999999999987521                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                           ++.+.+.|+.+ ++   +.||+|++...++|..    ......++.++.+++  |+ ++
T Consensus        96 ---------------------~~~~~~~d~~~-~~---~~~D~v~~~~p~~~~~----~~~~~~~l~~~~~~~--g~-~~  143 (200)
T 1ne2_A           96 ---------------------GVNFMVADVSE-IS---GKYDTWIMNPPFGSVV----KHSDRAFIDKAFETS--MW-IY  143 (200)
T ss_dssp             ---------------------TSEEEECCGGG-CC---CCEEEEEECCCC-----------CHHHHHHHHHHE--EE-EE
T ss_pred             ---------------------CCEEEECcHHH-CC---CCeeEEEECCCchhcc----CchhHHHHHHHHHhc--Cc-EE
Confidence                                 47888888876 22   6899999998886653    122357888899888  44 44


Q ss_pred             Ee
Q 047406          221 LE  222 (290)
Q Consensus       221 i~  222 (290)
                      +.
T Consensus       144 ~~  145 (200)
T 1ne2_A          144 SI  145 (200)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.10  E-value=1.1e-10  Score=116.55  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=78.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||||||.|.++..||+.  +.+|+|+|+|+.+++.|+.+...                              
T Consensus        63 ~~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~------------------------------  110 (569)
T 4azs_A           63 ALGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEE------------------------------  110 (569)
T ss_dssp             HHTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHT------------------------------
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHh------------------------------
Confidence            3457789999999999999999987  45899999999999999987654                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                        .+.. ++.+.+.+..+.. ...++.||+|+|..+++|+.-    +.....+..+.+.|+++|
T Consensus       111 ------------------~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~----~~~~~~~~~~~~tl~~~~  167 (569)
T 4azs_A          111 ------------------NPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVH----LHGIDEVKRLLSRLADVT  167 (569)
T ss_dssp             ------------------STTS-EEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHH----HHCHHHHHHHHHHHHHHS
T ss_pred             ------------------cCCC-ceEEEECCHHHHhhhccCCCccEEEECcchhcCCC----HHHHHHHHHHHHHhcccc
Confidence                              2211 4888888876521 234578999999999987741    111222334556666666


Q ss_pred             EEEE
Q 047406          218 IFVL  221 (290)
Q Consensus       218 ~l~i  221 (290)
                      ..++
T Consensus       168 ~~~~  171 (569)
T 4azs_A          168 QAVI  171 (569)
T ss_dssp             SEEE
T ss_pred             ceee
Confidence            5554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.08  E-value=1.7e-09  Score=93.18  Aligned_cols=101  Identities=18%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+++.  ..+|+|+|+++..                                         
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------------------------------------   59 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------------------------------------   59 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------------------------------------
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------------------------------------
Confidence            467899999999999999999887  5699999998621                                         


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC--------C---CCceeEEEEchhhh----h-hhhcCCchHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS--------P---EKYYDAILCLSVTK----W-IHLNWGDDGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--------~---~~~fD~I~~~~vl~----~-~~l~~~~~~~~  203 (290)
                                         ...++.+.+.|+.+. +.        .   .++||+|+|.....    | .......+...
T Consensus        60 -------------------~~~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~  119 (191)
T 3dou_A           60 -------------------EIAGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQ  119 (191)
T ss_dssp             -------------------CCTTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHH
T ss_pred             -------------------cCCCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHH
Confidence                               012578888998662 11        0   14899999953211    0 00000012346


Q ss_pred             HHHHHHHhhcCCCcEEEEee
Q 047406          204 TLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~  223 (290)
                      .++..+.++|+|||.|++..
T Consensus       120 ~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A          120 RVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHccCCCEEEEEE
Confidence            78899999999999999853

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.07  E-value=2.8e-10  Score=96.31  Aligned_cols=103  Identities=24%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC---------ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC---------RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK  130 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~---------~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (290)
                      +.++.+|||+|||+|.++..+++.++.         .+|+|+|+|+..         .                      
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~----------------------   68 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P----------------------   68 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C----------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c----------------------
Confidence            467899999999999999999998764         689999999721         0                      


Q ss_pred             cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEe-ecccccCC-------CCCCCceeEEEEchhhhhhhhcCCchH-
Q 047406          131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFK-QENFVHGR-------DSPEKYYDAILCLSVTKWIHLNWGDDG-  201 (290)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~-------~~~~~~fD~I~~~~vl~~~~l~~~~~~-  201 (290)
                                                   ...+.+. +.|+.+..       ..+..+||+|+|....++.. .+..+. 
T Consensus        69 -----------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~-~~~~~~~  118 (196)
T 2nyu_A           69 -----------------------------LEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATG-FRDLDHD  118 (196)
T ss_dssp             -----------------------------CTTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCS-CHHHHHH
T ss_pred             -----------------------------CCCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCC-CcccCHH
Confidence                                         0135555 66654310       01235799999965332110 000011 


Q ss_pred             -----HHHHHHHHHhhcCCCcEEEEee
Q 047406          202 -----LITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       202 -----~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                           ...++.++.++|+|||.+++..
T Consensus       119 ~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A          119 RLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence                 2588999999999999999964

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.07  E-value=2.5e-10  Score=108.41  Aligned_cols=110  Identities=18%  Similarity=0.219  Sum_probs=83.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|.+++.++..  ..+|+++|+|+.+++.|+.++..                                 
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~---------------------------------  253 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARL---------------------------------  253 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence            7889999999999999999987  56899999999999999998876                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhhhhhhc-----CCchHHHHHHHHHHhhc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLN-----WGDDGLITLFMRIWKLL  213 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~-----~~~~~~~~~l~~~~~~L  213 (290)
                                     +++.. +.+...|+.+..+.   ...+||+|++..-.  +...     -.......++..+.++|
T Consensus       254 ---------------n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~--~~~~~~~~~~~~~~~~~~l~~~~~~L  315 (382)
T 1wxx_A          254 ---------------NGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLDPPA--FAKGKKDVERAYRAYKEVNLRAIKLL  315 (382)
T ss_dssp             ---------------TTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEECCCC--SCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             ---------------cCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEECCCC--CCCChhHHHHHHHHHHHHHHHHHHhc
Confidence                           33433 88999987663221   14689999984321  0000     00145678999999999


Q ss_pred             CCCcEEEEeeC
Q 047406          214 RPGGIFVLEPQ  224 (290)
Q Consensus       214 kpgG~l~i~~~  224 (290)
                      +|||++++...
T Consensus       316 kpgG~l~~~~~  326 (382)
T 1wxx_A          316 KEGGILATASC  326 (382)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCCEEEEEEC
Confidence            99999999754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.06  E-value=3.8e-10  Score=107.61  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.+++.+|.. +..+|+|+|+|+.+++.|+.++..                               
T Consensus       218 ~~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~-------------------------------  265 (396)
T 3c0k_A          218 YVENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVEL-------------------------------  265 (396)
T ss_dssp             HCTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hhCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            368899999999999999998885 345899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCC---CCCceeEEEEchhhhhh---hhcCCchHHHHHHHHHHhh
Q 047406          140 AAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWI---HLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~---~l~~~~~~~~~~l~~~~~~  212 (290)
                                       +++ ..++.+...|+.+..+.   ....||+|++..-....   ++.-...+...++.++.++
T Consensus       266 -----------------ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  328 (396)
T 3c0k_A          266 -----------------NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL  328 (396)
T ss_dssp             -----------------TTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHT
T ss_pred             -----------------cCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence                             344 33688999997663211   13689999985321000   0001125678899999999


Q ss_pred             cCCCcEEEEeeC
Q 047406          213 LRPGGIFVLEPQ  224 (290)
Q Consensus       213 LkpgG~l~i~~~  224 (290)
                      |+|||+++++..
T Consensus       329 LkpgG~l~~~~~  340 (396)
T 3c0k_A          329 LNEGGILLTFSC  340 (396)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEEeC
Confidence            999999999754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.06  E-value=3.3e-09  Score=102.55  Aligned_cols=103  Identities=21%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+|..  ..+|+|+|+|+.+++.|+.++..                                
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~--------------------------------  330 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARL--------------------------------  330 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence            46789999999999999999987  56999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      +++. ++.|...|+.+.++   .+.+.||+|++..-.         .+...++..+. .++|++
T Consensus       331 ----------------~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr---------~g~~~~~~~l~-~~~p~~  383 (433)
T 1uwv_A          331 ----------------NGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR---------AGAAGVMQQII-KLEPIR  383 (433)
T ss_dssp             ----------------TTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT---------TCCHHHHHHHH-HHCCSE
T ss_pred             ----------------cCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEECCCC---------ccHHHHHHHHH-hcCCCe
Confidence                            3333 68999999876422   234689999985432         11223444443 378999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++++.
T Consensus       384 ivyvsc~  390 (433)
T 1uwv_A          384 IVYVSCN  390 (433)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9999754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.05  E-value=5.6e-10  Score=107.11  Aligned_cols=115  Identities=18%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.....+|.+|||+|||+|.+++.+|.. +. +|+++|+|+.+++.|+.++..                           
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~---------------------------  258 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARK-GA-YALAVDKDLEALGVLDQAALR---------------------------  258 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHH---------------------------
Confidence            3334445999999999999999998885 33 599999999999999999876                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHhh
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                           +++.  ..+.+.|..+.++...+.||+|++....-   .-.+.-...+...++..+.++
T Consensus       259 ---------------------ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~  315 (393)
T 4dmg_A          259 ---------------------LGLR--VDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRL  315 (393)
T ss_dssp             ---------------------HTCC--CEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------hCCC--CcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence                                 2232  23457776653222234499999853320   000000013557899999999


Q ss_pred             cCCCcEEEEe
Q 047406          213 LRPGGIFVLE  222 (290)
Q Consensus       213 LkpgG~l~i~  222 (290)
                      |+|||+|++.
T Consensus       316 LkpGG~Lv~~  325 (393)
T 4dmg_A          316 LAEEGFLWLS  325 (393)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999964

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.05  E-value=6e-10  Score=104.21  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=81.3

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      ..+.++.+|||+|||+|.+++. +.  ++.+|+++|+|+.+++.|+.++..                             
T Consensus       191 ~~~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~-----------------------------  238 (336)
T 2yx1_A          191 KKVSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKL-----------------------------  238 (336)
T ss_dssp             HHCCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHH-----------------------------
T ss_pred             HhcCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHH-----------------------------
Confidence            4446889999999999999999 77  466999999999999999999876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         +++..++.+.+.|..+..    ..||+|++....          ....++..+.++|+|||
T Consensus       239 -------------------n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~----------~~~~~l~~~~~~L~~gG  285 (336)
T 2yx1_A          239 -------------------NKLEHKIIPILSDVREVD----VKGNRVIMNLPK----------FAHKFIDKALDIVEEGG  285 (336)
T ss_dssp             -------------------TTCTTTEEEEESCGGGCC----CCEEEEEECCTT----------TGGGGHHHHHHHEEEEE
T ss_pred             -------------------cCCCCcEEEEECChHHhc----CCCcEEEECCcH----------hHHHHHHHHHHHcCCCC
Confidence                               444456899999987742    789999985321          11267888999999999


Q ss_pred             EEEEe
Q 047406          218 IFVLE  222 (290)
Q Consensus       218 ~l~i~  222 (290)
                      ++++.
T Consensus       286 ~l~~~  290 (336)
T 2yx1_A          286 VIHYY  290 (336)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99885

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.02  E-value=1.8e-09  Score=100.79  Aligned_cols=111  Identities=11%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC-----ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC-----RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~-----~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      ++.+|||+|||+|.++..++...+.     .+++|+|+++.+++.|+.++...                           
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~---------------------------  182 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---------------------------  182 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---------------------------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC---------------------------
Confidence            5689999999999999998887653     68999999999999999987651                           


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhh-----cC------Cc-hHHHH
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHL-----NW------GD-DGLIT  204 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l-----~~------~~-~~~~~  204 (290)
                                           ++  .+.+.+.|....  .+..+||+|+++....+..-     .+      +. +....
T Consensus       183 ---------------------g~--~~~i~~~D~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~  237 (344)
T 2f8l_A          183 ---------------------RQ--KMTLLHQDGLAN--LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFL  237 (344)
T ss_dssp             ---------------------TC--CCEEEESCTTSC--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHH
T ss_pred             ---------------------CC--CceEEECCCCCc--cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHH
Confidence                                 22  367888887653  24578999999866432210     00      00 11236


Q ss_pred             HHHHHHhhcCCCcEEEEeeC
Q 047406          205 LFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ++.++.+.|+|||++++..+
T Consensus       238 ~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          238 FIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCEEEEEEC
Confidence            89999999999999999754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.02  E-value=1.1e-09  Score=107.57  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=84.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ++.+|||+|||+|..+..+|+.++ ...|+++|+|+.+++.++.++...                               
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~-------------------------------  165 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC-------------------------------  165 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence            789999999999999999999875 358999999999999999988762                               


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc------hhhhhh-h--hcCCc-------hHHHH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL------SVTKWI-H--LNWGD-------DGLIT  204 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~------~vl~~~-~--l~~~~-------~~~~~  204 (290)
                                       ++. ++.+...|..+......+.||+|+|.      .++... .  ..|..       ..+..
T Consensus       166 -----------------g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~  227 (479)
T 2frx_A          166 -----------------GIS-NVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRE  227 (479)
T ss_dssp             -----------------TCC-SEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHH
T ss_pred             -----------------CCC-cEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHH
Confidence                             222 47788888765211134689999982      111100 0  01111       22468


Q ss_pred             HHHHHHhhcCCCcEEEEeeCCC
Q 047406          205 LFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      ++..+.++|+|||+|++++-.+
T Consensus       228 iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          228 LIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHhcCCCCEEEEecccC
Confidence            8999999999999999976544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.01  E-value=1.4e-09  Score=104.84  Aligned_cols=115  Identities=23%  Similarity=0.311  Sum_probs=83.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..+++.++..+|+++|+|+.+++.++.++..                                
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~--------------------------------  292 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR--------------------------------  292 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH--------------------------------
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHH--------------------------------
Confidence            578899999999999999999988767999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEc------hhhhhh---hhcCCchH-------HH
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCL------SVTKWI---HLNWGDDG-------LI  203 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~------~vl~~~---~l~~~~~~-------~~  203 (290)
                                      .++  .+.+...|+.+... .+.+.||+|++.      .+++..   ...+...+       +.
T Consensus       293 ----------------~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~  354 (429)
T 1sqg_A          293 ----------------LGM--KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS  354 (429)
T ss_dssp             ----------------TTC--CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHH
T ss_pred             ----------------cCC--CeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHH
Confidence                            222  25777888765211 234689999962      111100   00011222       26


Q ss_pred             HHHHHHHhhcCCCcEEEEeeCC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      .++.++.++|+|||++++++..
T Consensus       355 ~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          355 EILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             HHHHHHGGGEEEEEEEEEEESC
T ss_pred             HHHHHHHHhcCCCCEEEEEECC
Confidence            8899999999999999997643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.99  E-value=3.7e-10  Score=108.93  Aligned_cols=97  Identities=20%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             cCCCcEEEecCC------CChhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           61 FEGKDCLDIGCN------SGIITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        61 ~~~~~vLDiGcG------~G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      .++.+|||||||      +|..+..+++. ++..+|+|+|+|+.+.        .                         
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-------------------------  261 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-------------------------  261 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-------------------------
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-------------------------
Confidence            467899999999      66666666665 4777999999999751        0                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC------CCceeEEEEchhhhhhhhcCCchHHHHHHH
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP------EKYYDAILCLSVTKWIHLNWGDDGLITLFM  207 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~  207 (290)
                                               ...++.|.++|+.+ .+..      .++||+|+|... ++.      .+....|.
T Consensus       262 -------------------------~~~rI~fv~GDa~d-lpf~~~l~~~d~sFDlVisdgs-H~~------~d~~~aL~  308 (419)
T 3sso_A          262 -------------------------DELRIRTIQGDQND-AEFLDRIARRYGPFDIVIDDGS-HIN------AHVRTSFA  308 (419)
T ss_dssp             -------------------------CBTTEEEEECCTTC-HHHHHHHHHHHCCEEEEEECSC-CCH------HHHHHHHH
T ss_pred             -------------------------cCCCcEEEEecccc-cchhhhhhcccCCccEEEECCc-ccc------hhHHHHHH
Confidence                                     01358999999866 2333      478999999644 322      46789999


Q ss_pred             HHHhhcCCCcEEEEee
Q 047406          208 RIWKLLRPGGIFVLEP  223 (290)
Q Consensus       208 ~~~~~LkpgG~l~i~~  223 (290)
                      +++++|+|||++++..
T Consensus       309 el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          309 ALFPHVRPGGLYVIED  324 (419)
T ss_dssp             HHGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCeEEEEEe
Confidence            9999999999999964

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.98  E-value=1.1e-09  Score=100.07  Aligned_cols=103  Identities=13%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.++.++..                                
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~--------------------------------   72 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQG--------------------------------   72 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT--------------------------------
T ss_pred             CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence            46789999999999999999987  34899999999999999886532                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHH-------------
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM-------------  207 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~-------------  207 (290)
                                      .++..++.+...|+.+. +.  ..||+|+++...+|..     +.+..++.             
T Consensus        73 ----------------~~~~~~v~~~~~D~~~~-~~--~~fD~vv~nlpy~~~~-----~~~~~~l~~~~~~~~~~~m~q  128 (285)
T 1zq9_A           73 ----------------TPVASKLQVLVGDVLKT-DL--PFFDTCVANLPYQISS-----PFVFKLLLHRPFFRCAILMFQ  128 (285)
T ss_dssp             ----------------STTGGGEEEEESCTTTS-CC--CCCSEEEEECCGGGHH-----HHHHHHHHCSSCCSEEEEEEE
T ss_pred             ----------------cCCCCceEEEEcceecc-cc--hhhcEEEEecCcccch-----HHHHHHHhcCcchhhhhhhhh
Confidence                            22224688999998762 33  3799999976655432     33333332             


Q ss_pred             -HH--HhhcCCCcEEEE
Q 047406          208 -RI--WKLLRPGGIFVL  221 (290)
Q Consensus       208 -~~--~~~LkpgG~l~i  221 (290)
                       ++  ..+++|||.++.
T Consensus       129 kEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A          129 REFALRLVAKPGDKLYC  145 (285)
T ss_dssp             HHHHHHHHCCTTCTTCS
T ss_pred             HHHHHHHhcCCCCcccc
Confidence             22  358999997643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.94  E-value=5.4e-09  Score=101.19  Aligned_cols=162  Identities=16%  Similarity=0.197  Sum_probs=101.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-------------CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-------------NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEV  127 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-------------~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  127 (290)
                      .++.+|||+|||+|.+++.+++..             ...+++|+|+++.+++.|+.++..+                  
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~------------------  231 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH------------------  231 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh------------------
Confidence            356899999999999998887653             2357999999999999999987652                  


Q ss_pred             hhccCCcchhhhhHHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhhhhh---c-------
Q 047406          128 IEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHL---N-------  196 (290)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l---~-------  196 (290)
                                                    ++.. ...+.++|.... + ....||+|+++.......-   .       
T Consensus       232 ------------------------------g~~~~~~~i~~gD~l~~-~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~  279 (445)
T 2okc_A          232 ------------------------------GIGTDRSPIVCEDSLEK-E-PSTLVDVILANPPFGTRPAGSVDINRPDFY  279 (445)
T ss_dssp             ------------------------------TCCSSCCSEEECCTTTS-C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSS
T ss_pred             ------------------------------CCCcCCCCEeeCCCCCC-c-ccCCcCEEEECCCCCCcccccchhhHhhcC
Confidence                                          1211 356778887663 2 2348999999754321000   0       


Q ss_pred             C-CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCC
Q 047406          197 W-GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLS  275 (290)
Q Consensus       197 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~  275 (290)
                      + .......++..+.++|+|||++++..+...-+..                -....+.+.++++.++..+-....+-. 
T Consensus       280 ~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~----------------~~~~~iR~~L~~~~~l~~ii~lp~~~F-  342 (445)
T 2okc_A          280 VETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA----------------GAGETIRKRLLQDFNLHTILRLPTGIF-  342 (445)
T ss_dssp             SCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS----------------THHHHHHHHHHHHEEEEEEEECCSSSS-
T ss_pred             CCCcchHHHHHHHHHHHhccCCEEEEEECCcccccC----------------cHHHHHHHHHHhcCcEEEEEeCCCCCc-
Confidence            0 0112347889999999999999986541000000                001234444667766665555444222 


Q ss_pred             CCCCCCCcceeeecC
Q 047406          276 SSKTGFNRPIFLFRK  290 (290)
Q Consensus       276 ~~~~~~~~~~~~~~k  290 (290)
                       ..++....|.+|+|
T Consensus       343 -~~t~v~t~Il~~~k  356 (445)
T 2okc_A          343 -YAQGVKANVLFFSK  356 (445)
T ss_dssp             -SSTTCCEEEEEEEE
T ss_pred             -cCCCCCEEEEEEEC
Confidence             23455556666653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.93  E-value=4.4e-09  Score=101.81  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=76.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+|+.  ..+|+|+|+|+.+++.|+.++..                               
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~-------------------------------  334 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEI-------------------------------  334 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence            567899999999999999999886  45899999999999999998765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH-HHHHHHHHhhcCCCcE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL-ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~-~~~l~~~~~~LkpgG~  218 (290)
                                       +++.  +.|...|+.+..   ...||+|++....         .+. ..++..+. .|+|+|+
T Consensus       335 -----------------ngl~--v~~~~~d~~~~~---~~~fD~Vv~dPPr---------~g~~~~~~~~l~-~l~p~gi  382 (425)
T 2jjq_A          335 -----------------NNVD--AEFEVASDREVS---VKGFDTVIVDPPR---------AGLHPRLVKRLN-REKPGVI  382 (425)
T ss_dssp             -----------------HTCC--EEEEECCTTTCC---CTTCSEEEECCCT---------TCSCHHHHHHHH-HHCCSEE
T ss_pred             -----------------cCCc--EEEEECChHHcC---ccCCCEEEEcCCc---------cchHHHHHHHHH-hcCCCcE
Confidence                             3333  889999987642   2289999985432         111 23444443 5899999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      ++++..
T Consensus       383 vyvsc~  388 (425)
T 2jjq_A          383 VYVSCN  388 (425)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            999864

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.92  E-value=8.3e-09  Score=93.31  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=79.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||.|.++..++   +...++|+|||+.+++.++.++..                                
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~--------------------------------  148 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFARE--------------------------------  148 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHh--------------------------------
Confidence            567899999999999988866   677999999999999999998765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+  ....+...|....  .+.++||+|+.+-++|++.     +......-++...|+++|+++
T Consensus       149 ----------------~g--~~~~~~v~D~~~~--~~~~~~DvvLllk~lh~LE-----~q~~~~~~~ll~aL~~~~vvV  203 (253)
T 3frh_A          149 ----------------KD--WDFTFALQDVLCA--PPAEAGDLALIFKLLPLLE-----REQAGSAMALLQSLNTPRMAV  203 (253)
T ss_dssp             ----------------TT--CEEEEEECCTTTS--CCCCBCSEEEEESCHHHHH-----HHSTTHHHHHHHHCBCSEEEE
T ss_pred             ----------------cC--CCceEEEeecccC--CCCCCcchHHHHHHHHHhh-----hhchhhHHHHHHHhcCCCEEE
Confidence                            12  2477888888764  3456999999998876552     222233338888999998877


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      -.+
T Consensus       204 sfP  206 (253)
T 3frh_A          204 SFP  206 (253)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.92  E-value=8.2e-10  Score=100.26  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=76.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||||||+|..+..+++. + .+|+++|+|+.+++.|++++....                              
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~------------------------------  118 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFH------------------------------  118 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHH------------------------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhc------------------------------
Confidence            35689999999999999998887 6 799999999999999987542200                              


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      ..+ ..++.+...|..+..    ++||+|++...           +...++..+.++|+|||++
T Consensus       119 ----------------~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~-----------dp~~~~~~~~~~L~pgG~l  167 (262)
T 2cmg_A          119 ----------------EVKNNKNFTHAKQLLDLDI----KKYDLIFCLQE-----------PDIHRIDGLKRMLKEDGVF  167 (262)
T ss_dssp             ----------------HHHTCTTEEEESSGGGSCC----CCEEEEEESSC-----------CCHHHHHHHHTTEEEEEEE
T ss_pred             ----------------cccCCCeEEEEechHHHHH----hhCCEEEECCC-----------ChHHHHHHHHHhcCCCcEE
Confidence                            001 135788888887632    78999998521           1224899999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       168 v~~~  171 (262)
T 2cmg_A          168 ISVA  171 (262)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9963

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.90  E-value=1.1e-08  Score=97.08  Aligned_cols=103  Identities=17%  Similarity=0.270  Sum_probs=74.2

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ++.+|||+|||+|.++..+++++ +..+++|+|+++.+++.|                                      
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------------------------------   80 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------------------------------   80 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------------------------------
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------------------------------
Confidence            46799999999999999999876 456999999999776544                                      


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh--------h---------------cC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH--------L---------------NW  197 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~--------l---------------~~  197 (290)
                                          ..+.+.+.|+.+.  .+.+.||+|+|+.-.....        +               ..
T Consensus        81 --------------------~~~~~~~~D~~~~--~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (421)
T 2ih2_A           81 --------------------PWAEGILADFLLW--EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKG  138 (421)
T ss_dssp             --------------------TTEEEEESCGGGC--CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCT
T ss_pred             --------------------CCCcEEeCChhhc--CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccC
Confidence                                1477888888763  2346899999952211000        0               00


Q ss_pred             CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          198 GDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ..+....++..+.++|+|||.+++..+
T Consensus       139 ~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A          139 KYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             TCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            111234778999999999999999754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.87  E-value=4.2e-10  Score=102.38  Aligned_cols=108  Identities=13%  Similarity=0.072  Sum_probs=70.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..+++.   .+|+|+|+++ ++..+...  .                               
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~--~-------------------------------  114 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV--P-------------------------------  114 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC--C-------------------------------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh--h-------------------------------
Confidence            457899999999999999998886   4899999988 32111100  0                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEe--ecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFK--QENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRP  215 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~Lkp  215 (290)
                                  ..  ......++.+.  +.|+.+ +  ++.+||+|+|... ++.. .+..+..  ..++..+.++|+|
T Consensus       115 ------------~~--~~~~~~~v~~~~~~~D~~~-l--~~~~fD~V~sd~~-~~~~-~~~~d~~~~l~~L~~~~r~Lkp  175 (265)
T 2oxt_A          115 ------------RI--TESYGWNIVKFKSRVDIHT-L--PVERTDVIMCDVG-ESSP-KWSVESERTIKILELLEKWKVK  175 (265)
T ss_dssp             ------------CC--CCBTTGGGEEEECSCCTTT-S--CCCCCSEEEECCC-CCCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------hh--hhccCCCeEEEecccCHhH-C--CCCCCcEEEEeCc-ccCC-ccchhHHHHHHHHHHHHHHhcc
Confidence                        00  00111157788  888866 2  3578999999755 2111 1001111  2478999999999


Q ss_pred             Cc--EEEEee
Q 047406          216 GG--IFVLEP  223 (290)
Q Consensus       216 gG--~l~i~~  223 (290)
                      ||  .|++..
T Consensus       176 GG~~~fv~kv  185 (265)
T 2oxt_A          176 NPSADFVVKV  185 (265)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCeEEEEEe
Confidence            99  998853

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.86  E-value=4.3e-10  Score=102.95  Aligned_cols=107  Identities=11%  Similarity=0.007  Sum_probs=70.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+...  .                               
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~--~-------------------------------  122 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK--P-------------------------------  122 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC--C-------------------------------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc--h-------------------------------
Confidence            357899999999999999998886   4899999988 42211110  0                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEe--ecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFK--QENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRP  215 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~Lkp  215 (290)
                                  ..  ......++.+.  +.|+.+ +  ++++||+|+|... ++.. .+..+..  ..++..+.++|+|
T Consensus       123 ------------~~--~~~~~~~v~~~~~~~D~~~-l--~~~~fD~Vvsd~~-~~~~-~~~~d~~~~l~~L~~~~r~Lkp  183 (276)
T 2wa2_A          123 ------------RL--VETFGWNLITFKSKVDVTK-M--EPFQADTVLCDIG-ESNP-TAAVEASRTLTVLNVISRWLEY  183 (276)
T ss_dssp             ------------CC--CCCTTGGGEEEECSCCGGG-C--CCCCCSEEEECCC-CCCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------hh--hhhcCCCeEEEeccCcHhh-C--CCCCcCEEEECCC-cCCC-chhhhHHHHHHHHHHHHHHhcc
Confidence                        00  00111257788  888866 3  3578999999755 2111 0000111  2478999999999


Q ss_pred             Cc--EEEEe
Q 047406          216 GG--IFVLE  222 (290)
Q Consensus       216 gG--~l~i~  222 (290)
                      ||  .|++.
T Consensus       184 GG~~~~v~~  192 (276)
T 2wa2_A          184 NQGCGFCVK  192 (276)
T ss_dssp             STTCEEEEE
T ss_pred             CCCcEEEEE
Confidence            99  88884

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.86  E-value=3.3e-09  Score=101.21  Aligned_cols=119  Identities=13%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ++.+|||+|||+|..++.++.+.+..+|+++|+++.+++.++.|+.........               ..+..      
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~---------------~~~~~------  105 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR---------------ESKGR------  105 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCE---------------ECSSE------
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccc---------------ccccc------
Confidence            789999999999999999999877678999999999999999998762000000               00000      


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                           +       ...++. ++.+.+.|...........||+|++..-.          ....++..+.++|+|||++++
T Consensus       106 -----~-------~~~gl~-~i~v~~~Da~~~~~~~~~~fD~I~lDP~~----------~~~~~l~~a~~~lk~gG~l~v  162 (378)
T 2dul_A          106 -----A-------ILKGEK-TIVINHDDANRLMAERHRYFHFIDLDPFG----------SPMEFLDTALRSAKRRGILGV  162 (378)
T ss_dssp             -----E-------EEESSS-EEEEEESCHHHHHHHSTTCEEEEEECCSS----------CCHHHHHHHHHHEEEEEEEEE
T ss_pred             -----c-------cccCCC-ceEEEcCcHHHHHHhccCCCCEEEeCCCC----------CHHHHHHHHHHhcCCCCEEEE
Confidence                 0       000332 27888888765321123579999953210          125778889999999999998


Q ss_pred             eeC
Q 047406          222 EPQ  224 (290)
Q Consensus       222 ~~~  224 (290)
                      ...
T Consensus       163 t~t  165 (378)
T 2dul_A          163 TAT  165 (378)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            764

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.85  E-value=3.3e-08  Score=94.53  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=85.7

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCC--------------------------------------ceEEEEeCCHHHH
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNC--------------------------------------RSILGIDIDSNRV   99 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~i~g~Dis~~~l   99 (290)
                      ..|.++..++|.+||+|.+++..|.....                                      .+|+|+|+|+.++
T Consensus       190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al  269 (384)
T 3ldg_A          190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV  269 (384)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence            45678899999999999999887765432                                      3599999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC
Q 047406          100 ADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK  179 (290)
Q Consensus       100 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  179 (290)
                      +.|+.|+..                                                .++.+.+.+.+.|+.+. +. ..
T Consensus       270 ~~Ar~Na~~------------------------------------------------~gl~~~I~~~~~D~~~l-~~-~~  299 (384)
T 3ldg_A          270 EIARKNARE------------------------------------------------VGLEDVVKLKQMRLQDF-KT-NK  299 (384)
T ss_dssp             HHHHHHHHH------------------------------------------------TTCTTTEEEEECCGGGC-CC-CC
T ss_pred             HHHHHHHHH------------------------------------------------cCCCCceEEEECChHHC-Cc-cC
Confidence            999999876                                                44555699999999873 33 35


Q ss_pred             ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC--CcEEEEeeC
Q 047406          180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP--GGIFVLEPQ  224 (290)
Q Consensus       180 ~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp--gG~l~i~~~  224 (290)
                      .||+|+|+.-.. ..+ .....+..++..+.+.|++  ||.+++..+
T Consensus       300 ~fD~Iv~NPPYG-~rl-~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          300 INGVLISNPPYG-ERL-LDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             CSCEEEECCCCT-TTT-SCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             CcCEEEECCchh-hcc-CCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            899999974321 001 1235667788888878776  888888544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.85  E-value=1.5e-08  Score=93.35  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++.++..                                
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~--------------------------------   86 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLY--------------------------------   86 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            57789999999999999999886  45899999999999999987654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHH--------------
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLF--------------  206 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l--------------  206 (290)
                                      .++ .++.+...|+.+. +  ...||+|+|+...+|.     .+.+..++              
T Consensus        87 ----------------~~~-~~v~~~~~D~~~~-~--~~~~D~Vv~n~py~~~-----~~~~~~ll~~~~~~~~~~l~~Q  141 (299)
T 2h1r_A           87 ----------------EGY-NNLEVYEGDAIKT-V--FPKFDVCTANIPYKIS-----SPLIFKLISHRPLFKCAVLMFQ  141 (299)
T ss_dssp             ----------------TTC-CCEEC----CCSS-C--CCCCSEEEEECCGGGH-----HHHHHHHHHCSSCCSEEEEEEE
T ss_pred             ----------------cCC-CceEEEECchhhC-C--cccCCEEEEcCCcccc-----cHHHHHHHhcCCccceeeehHH
Confidence                            222 3588888888663 2  3489999997655433     23444444              


Q ss_pred             -HHHHhhcCCCc
Q 047406          207 -MRIWKLLRPGG  217 (290)
Q Consensus       207 -~~~~~~LkpgG  217 (290)
                       +.+.++++++|
T Consensus       142 ~e~a~rlla~~G  153 (299)
T 2h1r_A          142 KEFAERMLANVG  153 (299)
T ss_dssp             HHHHHHHTCCTT
T ss_pred             HHHHHHHhcCCC
Confidence             34667888877

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.85  E-value=1.2e-08  Score=97.52  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=83.0

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCC--------------------------------------ceEEEEeCCHHHHH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNC--------------------------------------RSILGIDIDSNRVA  100 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~i~g~Dis~~~l~  100 (290)
                      .|.++.++||++||+|.+++.+|.....                                      ..|+|+|+|+.+++
T Consensus       192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~  271 (385)
T 3ldu_A          192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID  271 (385)
T ss_dssp             CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence            4567899999999999999988775321                                      46999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCc
Q 047406          101 DAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKY  180 (290)
Q Consensus       101 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  180 (290)
                      .|+.++..                                                .++.+.+.|.+.|+.+. +. ...
T Consensus       272 ~Ar~Na~~------------------------------------------------~gl~~~i~~~~~D~~~l-~~-~~~  301 (385)
T 3ldu_A          272 IARENAEI------------------------------------------------AGVDEYIEFNVGDATQF-KS-EDE  301 (385)
T ss_dssp             HHHHHHHH------------------------------------------------HTCGGGEEEEECCGGGC-CC-SCB
T ss_pred             HHHHHHHH------------------------------------------------cCCCCceEEEECChhhc-Cc-CCC
Confidence            99999876                                                33444699999999873 33 358


Q ss_pred             eeEEEEchhhh-hhhhcCCchHHHHHHHHHHhhcCC--CcEEEEeeC
Q 047406          181 YDAILCLSVTK-WIHLNWGDDGLITLFMRIWKLLRP--GGIFVLEPQ  224 (290)
Q Consensus       181 fD~I~~~~vl~-~~~l~~~~~~~~~~l~~~~~~Lkp--gG~l~i~~~  224 (290)
                      ||+|+|+.-.. .+.   ..+.+..++..+.+.|++  |+.+++-.+
T Consensus       302 ~D~Iv~NPPyg~rl~---~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          302 FGFIITNPPYGERLE---DKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             SCEEEECCCCCCSHH---HHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             CcEEEECCCCcCccC---CHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            99999964421 010   124566777777777776  777777443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.83  E-value=1.8e-08  Score=96.62  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=82.5

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCC--------------------------------------ceEEEEeCCHHHH
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNC--------------------------------------RSILGIDIDSNRV   99 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------------~~i~g~Dis~~~l   99 (290)
                      ..|.++.++||++||+|.+++..|.....                                      .+|+|+|+|+.++
T Consensus       197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al  276 (393)
T 3k0b_A          197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI  276 (393)
T ss_dssp             SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence            34678899999999999998887765432                                      3599999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC
Q 047406          100 ADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK  179 (290)
Q Consensus       100 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  179 (290)
                      +.|+.++..                                                .++.+.+.+.+.|+.+. +. ..
T Consensus       277 ~~Ar~Na~~------------------------------------------------~gl~~~I~~~~~D~~~~-~~-~~  306 (393)
T 3k0b_A          277 EIAKQNAVE------------------------------------------------AGLGDLITFRQLQVADF-QT-ED  306 (393)
T ss_dssp             HHHHHHHHH------------------------------------------------TTCTTCSEEEECCGGGC-CC-CC
T ss_pred             HHHHHHHHH------------------------------------------------cCCCCceEEEECChHhC-CC-CC
Confidence            999999876                                                34455689999999873 33 35


Q ss_pred             ceeEEEEchhhh-hhhhcCCchHHHHHHHHHHhhcCC--CcEEEEeeC
Q 047406          180 YYDAILCLSVTK-WIHLNWGDDGLITLFMRIWKLLRP--GGIFVLEPQ  224 (290)
Q Consensus       180 ~fD~I~~~~vl~-~~~l~~~~~~~~~~l~~~~~~Lkp--gG~l~i~~~  224 (290)
                      .||+|+|+.-.. .+.   ..+.+..++..+.+.|++  ||.+++-.+
T Consensus       307 ~fD~Iv~NPPYg~rl~---~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          307 EYGVVVANPPYGERLE---DEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             CSCEEEECCCCCCSHH---HHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CCCEEEECCCCccccC---CchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            899999973310 010   123456667766666665  888887544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.82  E-value=1.1e-09  Score=101.46  Aligned_cols=104  Identities=11%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeC----CHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDI----DSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Di----s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.++.+|||||||+|.++..+++.   .+|+|+|+    ++..++.+..                               
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~-------------------------------  125 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPM-------------------------------  125 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCC-------------------------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHh-------------------------------
Confidence            457899999999999999998886   37999999    4432210000                               


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeec-ccccCCCCCCCceeEEEEchhh---hhhhhcCCchHHHHHHHHHHh
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQE-NFVHGRDSPEKYYDAILCLSVT---KWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~fD~I~~~~vl---~~~~l~~~~~~~~~~l~~~~~  211 (290)
                                         ...+ ...+.+.+. |+.+.   +..+||+|+|....   +|..   +......+|..+.+
T Consensus       126 -------------------~~~~-~~~v~~~~~~D~~~l---~~~~fD~V~sd~~~~~g~~~~---d~~~~l~~L~~~~~  179 (305)
T 2p41_A          126 -------------------STYG-WNLVRLQSGVDVFFI---PPERCDTLLCDIGESSPNPTV---EAGRTLRVLNLVEN  179 (305)
T ss_dssp             -------------------CSTT-GGGEEEECSCCTTTS---CCCCCSEEEECCCCCCSSHHH---HHHHHHHHHHHHHH
T ss_pred             -------------------hhcC-CCCeEEEeccccccC---CcCCCCEEEECCccccCcchh---hHHHHHHHHHHHHH
Confidence                               0000 135788888 77652   34689999996543   2221   00111257888999


Q ss_pred             hcCCCcEEEEee
Q 047406          212 LLRPGGIFVLEP  223 (290)
Q Consensus       212 ~LkpgG~l~i~~  223 (290)
                      +|+|||.|++..
T Consensus       180 ~LkpGG~~v~kv  191 (305)
T 2p41_A          180 WLSNNTQFCVKV  191 (305)
T ss_dssp             HCCTTCEEEEEE
T ss_pred             HhCCCCEEEEEe
Confidence            999999999853

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.81  E-value=6.8e-09  Score=99.67  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=82.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +|.+|||++||+|.+++.+|.+.. ..+|+++|+++.+++.++.|+..                                
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~--------------------------------   99 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL--------------------------------   99 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence            578999999999999999998754 35899999999999999999887                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcc-eeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDI-VSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                      +++.+. +.+...|..+.+. ...+.||+|++...        +  ....++..+.++|+|||+
T Consensus       100 ----------------Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP~--------g--~~~~~l~~a~~~Lk~gGl  153 (392)
T 3axs_A          100 ----------------NNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF--------G--TPVPFIESVALSMKRGGI  153 (392)
T ss_dssp             ----------------TTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECCS--------S--CCHHHHHHHHHHEEEEEE
T ss_pred             ----------------hCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECCC--------c--CHHHHHHHHHHHhCCCCE
Confidence                            445444 8888888755322 22467999997541        1  124578889999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      ++++..
T Consensus       154 l~~t~t  159 (392)
T 3axs_A          154 LSLTAT  159 (392)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.77  E-value=1.9e-07  Score=86.66  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..+|.+|||+|||+|..+..+|..++ ...|+++|+++.+++.++.++..                              
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r------------------------------  149 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR------------------------------  149 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            35789999999999999999998764 46899999999999999998876                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC--CCceeEEEEc------hhhhh-hhhc----CCc------
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP--EKYYDAILCL------SVTKW-IHLN----WGD------  199 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~------~vl~~-~~l~----~~~------  199 (290)
                                        .++ .++.+...|+.+..+..  ...||.|++.      .++.. ....    |..      
T Consensus       150 ------------------~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l  210 (309)
T 2b9e_A          150 ------------------AGV-SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHAL  210 (309)
T ss_dssp             ------------------TTC-CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHH
T ss_pred             ------------------cCC-CeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHH
Confidence                              223 25888888887632111  1579999972      11110 0111    111      


Q ss_pred             -hHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          200 -DGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       200 -~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                       ..+.++|..+.++++ ||+|+.++-
T Consensus       211 ~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          211 AGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             HHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             HHHHHHHHHHHHhccC-CCEEEEECC
Confidence             123567888888886 999988654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.74  E-value=1.2e-08  Score=94.17  Aligned_cols=122  Identities=12%  Similarity=0.066  Sum_probs=80.8

Q ss_pred             ccCCCcEEEecCCC------ChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           60 WFEGKDCLDIGCNS------GIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        60 ~~~~~~vLDiGcG~------G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      +.++.+|||+|||+      |.  ..+++..+ ..+|+|+|+|+. +                                 
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------------------------  104 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------------------------  104 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------------------------
Confidence            46789999999955      55  44566665 468999999985 0                                 


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeE-eecccccCCCCCCCceeEEEEchhhhhh---hhcC--CchHHHHHH
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSF-KQENFVHGRDSPEKYYDAILCLSVTKWI---HLNW--GDDGLITLF  206 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~~fD~I~~~~vl~~~---~l~~--~~~~~~~~l  206 (290)
                                                  .++.+ .++|+.+. +. .++||+|+|....++.   .++.  ..+....++
T Consensus       105 ----------------------------~~v~~~i~gD~~~~-~~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l  154 (290)
T 2xyq_A          105 ----------------------------SDADSTLIGDCATV-HT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLC  154 (290)
T ss_dssp             ----------------------------CSSSEEEESCGGGC-CC-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHH
T ss_pred             ----------------------------CCCEEEEECccccC-Cc-cCcccEEEEcCCccccccccccccchHHHHHHHH
Confidence                                        13667 88898762 22 3689999996432211   0110  123346899


Q ss_pred             HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ..+.++|+|||.|++.....                     -...++.+ ++++.||..++..
T Consensus       155 ~~a~r~LkpGG~~v~~~~~~---------------------~~~~~l~~-~l~~~GF~~v~~~  195 (290)
T 2xyq_A          155 GFIKQKLALGGSIAVKITEH---------------------SWNADLYK-LMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHHEEEEEEEEEEECSS---------------------SCCHHHHH-HHTTEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEEecc---------------------CCHHHHHH-HHHHcCCcEEEEE
Confidence            99999999999999953210                     11124444 6788889877776

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.67  E-value=4.9e-07  Score=90.09  Aligned_cols=115  Identities=11%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC---CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN---CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~---~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ++.+|+|.+||+|.+.+.+++...   ..+++|+|+++.++..|+.++..+                             
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-----------------------------  271 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH-----------------------------  271 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT-----------------------------
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc-----------------------------
Confidence            678999999999999888877642   458999999999999999987652                             


Q ss_pred             hhHHHHHHhhhcCCCccccCcC-cceeEeecccccC-CC-CCCCceeEEEEchhh--hhh------------h---hcCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHG-RD-SPEKYYDAILCLSVT--KWI------------H---LNWG  198 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~~-~~~~~fD~I~~~~vl--~~~------------~---l~~~  198 (290)
                                         ++. ..+.+.++|.... ++ .....||+|+++.-.  .|-            .   +.-.
T Consensus       272 -------------------gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~  332 (542)
T 3lkd_A          272 -------------------GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPK  332 (542)
T ss_dssp             -------------------TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCT
T ss_pred             -------------------CCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCC
Confidence                               221 2467788887653 22 345789999996322  120            0   0000


Q ss_pred             chHHHHHHHHHHhhcC-CCcEEEEeeC
Q 047406          199 DDGLITLFMRIWKLLR-PGGIFVLEPQ  224 (290)
Q Consensus       199 ~~~~~~~l~~~~~~Lk-pgG~l~i~~~  224 (290)
                      ...-..++..+.+.|+ |||++++..+
T Consensus       333 s~~~~~Fl~~~l~~Lk~~gGr~a~VlP  359 (542)
T 3lkd_A          333 SKADFAFLLHGYYHLKQDNGVMAIVLP  359 (542)
T ss_dssp             TCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred             chhhHHHHHHHHHHhCCCceeEEEEec
Confidence            1111358899999999 9999988654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.66  E-value=2.3e-07  Score=92.44  Aligned_cols=113  Identities=13%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcC---------------CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           64 KDCLDIGCNSGIITIQIAQKFN---------------CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~---------------~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      .+|+|.+||+|.+.+.++....               ..+++|+|+++.++..|+.++..+                   
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-------------------  306 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR-------------------  306 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT-------------------
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh-------------------
Confidence            3999999999998887655432               348999999999999999988762                   


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhh-----------
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIH-----------  194 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~-----------  194 (290)
                                                   ++...+.+.++|.+.....+..+||+|+++.-..   |-.           
T Consensus       307 -----------------------------gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~  357 (544)
T 3khk_A          307 -----------------------------GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTI  357 (544)
T ss_dssp             -----------------------------TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEE
T ss_pred             -----------------------------CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhc
Confidence                                         2222344466776553233457899999963321   110           


Q ss_pred             ---------hcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          195 ---------LNWGDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       195 ---------l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                               +.-....-..++..+.+.|+|||++++..+
T Consensus       358 g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          358 NTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             CCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence                     000011123688999999999999988654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.66  E-value=9.8e-08  Score=95.00  Aligned_cols=120  Identities=11%  Similarity=0.019  Sum_probs=79.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC------------------CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN------------------CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA  122 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~------------------~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~  122 (290)
                      .++.+|+|.+||+|.+.+.++....                  ..+++|+|+++.+++.|+.++..++..          
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~----------  237 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE----------  237 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC----------
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC----------
Confidence            3578999999999999888776532                  137999999999999999887652100          


Q ss_pred             chhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhh-----cC
Q 047406          123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHL-----NW  197 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l-----~~  197 (290)
                                                        ........+.+.|.+.........||+|+++.-.....-     ++
T Consensus       238 ----------------------------------~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~  283 (541)
T 2ar0_A          238 ----------------------------------GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF  283 (541)
T ss_dssp             ----------------------------------CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCC
T ss_pred             ----------------------------------ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhc
Confidence                                              000012556777765421123468999999754321000     00


Q ss_pred             ---CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          198 ---GDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       198 ---~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                         .......++..+.+.|+|||++++..+
T Consensus       284 ~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          284 VHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             SSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence               012234788999999999999999754

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.62  E-value=2.4e-07  Score=85.63  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=62.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  +.+|+++|+|+.+++.++.++..                                
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--------------------------------   94 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--------------------------------   94 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--------------------------------
T ss_pred             CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--------------------------------
Confidence            57789999999999999999987  56999999999999999887643                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhh
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT  190 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl  190 (290)
                                         ..++.+..+|+.+ .+.+..+||+|+++...
T Consensus        95 -------------------~~~v~vi~gD~l~-~~~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A           95 -------------------YNNIEIIWGDALK-VDLNKLDFNKVVANLPY  124 (295)
T ss_dssp             -------------------CSSEEEEESCTTT-SCGGGSCCSEEEEECCG
T ss_pred             -------------------CCCeEEEECchhh-CCcccCCccEEEEeCcc
Confidence                               1358899999877 34445679999987443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.61  E-value=3e-08  Score=93.75  Aligned_cols=45  Identities=22%  Similarity=0.448  Sum_probs=40.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|+.++..
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~  257 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAA  257 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHH
Confidence            4688999999999999998874  45899999999999999998875

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.61  E-value=3.5e-09  Score=94.16  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+.++.                                 
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~---------------------------------   72 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK---------------------------------   72 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT---------------------------------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc---------------------------------
Confidence            467899999999999999999873  689999999988877655321                                 


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHH----------HHHH---
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGL----------ITLF---  206 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~----------~~~l---  206 (290)
                                        ...++.+...|+.+ .+.+ .++| .|+++.-..     .....+          ...+   
T Consensus        73 ------------------~~~~v~~~~~D~~~-~~~~~~~~f-~vv~n~Py~-----~~~~~~~~~~~~~~~~~~~lm~q  127 (245)
T 1yub_A           73 ------------------LNTRVTLIHQDILQ-FQFPNKQRY-KIVGNIPYH-----LSTQIIKKVVFESRASDIYLIVE  127 (245)
T ss_dssp             ------------------TCSEEEECCSCCTT-TTCCCSSEE-EEEEECCSS-----SCHHHHHHHHHHCCCEEEEEEEE
T ss_pred             ------------------cCCceEEEECChhh-cCcccCCCc-EEEEeCCcc-----ccHHHHHHHHhCCCCCeEEEEee
Confidence                              12358899999876 3433 2578 566542110     001111          1223   


Q ss_pred             -HHHHhhcCCCcEEEEeeCC
Q 047406          207 -MRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       207 -~~~~~~LkpgG~l~i~~~~  225 (290)
                       +.+.++|+|||.+++..+.
T Consensus       128 ~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A          128 EGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             SSHHHHHHCGGGSHHHHTTT
T ss_pred             HHHHHHHhCCCCchhhhhee
Confidence             6689999999998885544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.61  E-value=1.7e-07  Score=83.59  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=39.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .++.+|||||||+|.++..+++..  .+|+|+|+|+.+++.++.++
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~   72 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKL   72 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhh
Confidence            467899999999999999999874  58999999999999998753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.58  E-value=4.7e-07  Score=92.79  Aligned_cols=117  Identities=23%  Similarity=0.264  Sum_probs=81.0

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHc------------------------------------------CCceEEEEeCC
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKF------------------------------------------NCRSILGIDID   95 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~------------------------------------------~~~~i~g~Dis   95 (290)
                      ..|.++.++||.+||+|.+++..|...                                          +...|+|+|+|
T Consensus       186 ~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did  265 (703)
T 3v97_A          186 SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSD  265 (703)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred             hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECC
Confidence            346788999999999999998877642                                          12479999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-
Q 047406           96 SNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-  174 (290)
Q Consensus        96 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-  174 (290)
                      +.+++.|+.|+..                                                .++.+.+.|.+.|+.+.. 
T Consensus       266 ~~av~~A~~N~~~------------------------------------------------agv~~~i~~~~~D~~~~~~  297 (703)
T 3v97_A          266 ARVIQRARTNARL------------------------------------------------AGIGELITFEVKDVAQLTN  297 (703)
T ss_dssp             HHHHHHHHHHHHH------------------------------------------------TTCGGGEEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHH------------------------------------------------cCCCCceEEEECChhhCcc
Confidence            9999999999887                                                344556899999998732 


Q ss_pred             CCCCCceeEEEEchhhhhhhhcCCchHHHHHHH---HHHhhcCCCcEEEEeeC
Q 047406          175 DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM---RIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       175 ~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~---~~~~~LkpgG~l~i~~~  224 (290)
                      +...+.||+|+|+.-.. ..+ .....+..++.   ++.+.+.|||.+++-.+
T Consensus       298 ~~~~~~~d~Iv~NPPYG-~Rl-g~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          298 PLPKGPYGTVLSNPPYG-ERL-DSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             SCTTCCCCEEEECCCCC-C----CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             ccccCCCCEEEeCCCcc-ccc-cchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            22233899999973320 000 12234444444   44455568999999554

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.45  E-value=1.3e-06  Score=80.87  Aligned_cols=115  Identities=21%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||.|.|..+..+++..+..+|+.+||++.+++.|++.+.....                             
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-----------------------------  132 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-----------------------------  132 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-----------------------------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-----------------------------
Confidence            466899999999999999998876667999999999999999987654210                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~  218 (290)
                                     ..--..++.+...|....+....++||+|+.-..-. .   .....+  ..++..+.++|+|||+
T Consensus       133 ---------------~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp-~---~~~~~L~t~eFy~~~~~~L~p~Gv  193 (294)
T 3o4f_A          133 ---------------GSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDP-I---GPGESLFTSAFYEGCKRCLNPGGI  193 (294)
T ss_dssp             ---------------TGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCC-C---CTTCCSSCCHHHHHHHHTEEEEEE
T ss_pred             ---------------cccCCCcEEEEechHHHHHhhccccCCEEEEeCCCc-C---CCchhhcCHHHHHHHHHHhCCCCE
Confidence                           000123688899998886666678999999732110 0   000111  5788999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      ++...
T Consensus       194 ~v~q~  198 (294)
T 3o4f_A          194 FVAQN  198 (294)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99953

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.44  E-value=2.1e-06  Score=75.26  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+...++|||+|||  .-++.+|+ .++.+|+.+|.+++..+.|+.++..
T Consensus        27 ~l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~   73 (202)
T 3cvo_A           27 AYEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAA   73 (202)
T ss_dssp             HHHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HhhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            44567899999985  56666666 3456999999999999999998876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.42  E-value=7.8e-08  Score=87.02  Aligned_cols=46  Identities=9%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH-------HHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS-------NRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~-------~~l~~a~~~~~~  108 (290)
                      .++.+|||+|||+|..++.+|..  ..+|+++|+|+       .+++.|+.++..
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~  134 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPET  134 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHh
Confidence            46789999999999999999886  35899999999       888888887654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.41  E-value=3.1e-07  Score=88.64  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +|.+|||+|||+|..++.+++.  ..+|+++|+|+.+++.|+.++...                                
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~--------------------------------  138 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLL--------------------------------  138 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHh--------------------------------
Confidence            4899999999999999998876  459999999999999999998751                                


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEc
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCL  187 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~  187 (290)
                                    ..++ .++.+.+.|+.+.++. +..+||+|++.
T Consensus       139 --------------~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A          139 --------------LNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             --------------SCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             --------------ccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence                          0033 4689999998763222 23579999994

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.40  E-value=5.2e-07  Score=82.35  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             ccCCCCCchh-hHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           43 IGQGLNEDPR-FKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        43 ~~~~~~~~~~-l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ++|+...++. ++.+...  +.++ +|||||||+|.++..+++.  +.+|+|+|+|+.+++.++++
T Consensus        25 ~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~   87 (271)
T 3fut_A           25 FGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEET   87 (271)
T ss_dssp             SSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHh
Confidence            3444444433 3333332  3567 9999999999999999987  35899999999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.39  E-value=2.3e-07  Score=85.99  Aligned_cols=47  Identities=28%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      .++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.|+.++.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~   71 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK   71 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            47889999999999999999998776799999999999999998754

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.37  E-value=7e-07  Score=80.87  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=85.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhH-------cCC-----ceEEEEeCCH---HHHHHHHHHHHHHHHhhhhhhhhhhhchhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQK-------FNC-----RSILGIDIDS---NRVADAYWHLRKIVRTEHNEKRRANASRVE  126 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~-------~~~-----~~i~g~Dis~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  126 (290)
                      ++.+|||+|||+|..+..+++.       .|.     .+++++|..|   +.+..+..+....     ...-+..+...|
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l-----~~~a~~l~~~w~  134 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPEL-----APWAEQLQAQWP  134 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGG-----HHHHHHHHHTCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhH-----HHHHHHHHHhcc
Confidence            4479999999999988776654       342     4899999877   6666553221000     000000000000


Q ss_pred             hhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCC----CceeEEEEchhhhhhhhcCCchH-
Q 047406          127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPE----KYYDAILCLSVTKWIHLNWGDDG-  201 (290)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~fD~I~~~~vl~~~~l~~~~~~-  201 (290)
                      ..-.|+.  +               +..  .+-..++.+..+|..+.++...    .+||+|+.-....    . ..+. 
T Consensus       135 ~~~~g~~--r---------------~~~--~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp----~-~~p~l  190 (257)
T 2qy6_A          135 MPLPGCH--R---------------LLL--DEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP----A-KNPDM  190 (257)
T ss_dssp             CSCSEEE--E---------------EEE--C--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT----T-TCGGG
T ss_pred             ccccchh--h---------------eec--cCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc----c-cChhh
Confidence            0000000  0               000  0011357788888876444322    2799999732110    0 0112 


Q ss_pred             -HHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          202 -LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       202 -~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                       ...+|..+.++|+|||+|+.-                          ......+..|..+||++.+.-+.
T Consensus       191 w~~~~l~~l~~~L~pGG~l~ty--------------------------saa~~vrr~L~~aGF~v~~~~g~  235 (257)
T 2qy6_A          191 WTQNLFNAMARLARPGGTLATF--------------------------TSAGFVRRGLQEAGFTMQKRKGF  235 (257)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEES--------------------------CCBHHHHHHHHHHTEEEEEECCS
T ss_pred             cCHHHHHHHHHHcCCCcEEEEE--------------------------eCCHHHHHHHHHCCCEEEeCCCC
Confidence             257899999999999999872                          12233445788899998876554

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.37  E-value=6.9e-07  Score=80.73  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=39.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .++.+|||||||+|.++..+++.  +.+|+++|+|+.+++.+++++
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~   71 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKY   71 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHH
T ss_pred             CCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHH
Confidence            56789999999999999999987  358999999999999998864

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.36  E-value=1.8e-06  Score=89.41  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=37.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC---CceEEEEeCCHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN---CRSILGIDIDSNRVADAY  103 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~---~~~i~g~Dis~~~l~~a~  103 (290)
                      .++.+|||.|||+|.+++.++...+   ..+++|+|+++.+++.|+
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK  365 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLS  365 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHH
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHH
Confidence            3578999999999999999888764   358999999999999984

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.33  E-value=2.5e-06  Score=81.30  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             eecccccCCCCCCCceeEEEEchhhhhhhhc-----------C--C-------------------chHHHHHHHHHHhhc
Q 047406          166 KQENFVHGRDSPEKYYDAILCLSVTKWIHLN-----------W--G-------------------DDGLITLFMRIWKLL  213 (290)
Q Consensus       166 ~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~-----------~--~-------------------~~~~~~~l~~~~~~L  213 (290)
                      ..+.|.. ...|.+++|+|+|+.++||+.=.           |  +                   ..++..+|+..++.|
T Consensus       137 vpgSFy~-rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL  215 (374)
T 3b5i_A          137 VPGSFYR-RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEV  215 (374)
T ss_dssp             EESCTTS-CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cChhhhc-ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444544 34678999999999999997510           0  0                   025677899999999


Q ss_pred             CCCcEEEEeeC
Q 047406          214 RPGGIFVLEPQ  224 (290)
Q Consensus       214 kpgG~l~i~~~  224 (290)
                      +|||.++++..
T Consensus       216 ~pGG~mvl~~~  226 (374)
T 3b5i_A          216 KRGGAMFLVCL  226 (374)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.30  E-value=1.6e-06  Score=87.83  Aligned_cols=103  Identities=10%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             CCcEEEecCCCChh---hHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           63 GKDCLDIGCNSGII---TIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        63 ~~~vLDiGcG~G~~---~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +..|||||||+|.+   ++..++.... .+|+++|.|+.+ ..|++....                              
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~------------------------------  406 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQF------------------------------  406 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHH------------------------------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHh------------------------------
Confidence            35799999999988   4443333221 278999999854 456655443                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        +++.+.|++.++|+.+ +..| .++|+|+|=    |+......+.+..++....+.|+|||+
T Consensus       407 ------------------N~~~dkVtVI~gd~ee-v~LP-EKVDIIVSE----wMG~fLl~E~mlevL~Ardr~LKPgGi  462 (637)
T 4gqb_A          407 ------------------EEWGSQVTVVSSDMRE-WVAP-EKADIIVSE----LLGSFADNELSPECLDGAQHFLKDDGV  462 (637)
T ss_dssp             ------------------HTTGGGEEEEESCTTT-CCCS-SCEEEEECC----CCBTTBGGGCHHHHHHHHGGGEEEEEE
T ss_pred             ------------------ccCCCeEEEEeCccee-ccCC-cccCEEEEE----cCcccccccCCHHHHHHHHHhcCCCcE
Confidence                              5667789999999987 3333 689999982    222222224556788888999999998


Q ss_pred             EE
Q 047406          219 FV  220 (290)
Q Consensus       219 l~  220 (290)
                      ++
T Consensus       463 mi  464 (637)
T 4gqb_A          463 SI  464 (637)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.26  E-value=1.6e-05  Score=76.10  Aligned_cols=58  Identities=17%  Similarity=0.142  Sum_probs=40.2

Q ss_pred             ecccccCCCCCCCceeEEEEchhhhhhhhcC-C--------------------------------chHHHHHHHHHHhhc
Q 047406          167 QENFVHGRDSPEKYYDAILCLSVTKWIHLNW-G--------------------------------DDGLITLFMRIWKLL  213 (290)
Q Consensus       167 ~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~-~--------------------------------~~~~~~~l~~~~~~L  213 (290)
                      .+.|.. ...|.+++|+|+|+.++||+.=-- .                                ..++..+|+..++.|
T Consensus       137 pgSFy~-rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL  215 (384)
T 2efj_A          137 PGSFYS-RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEEL  215 (384)
T ss_dssp             CSCTTS-CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             chhhhh-ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444 356789999999999999974110 0                                012234577789999


Q ss_pred             CCCcEEEEeeCC
Q 047406          214 RPGGIFVLEPQP  225 (290)
Q Consensus       214 kpgG~l~i~~~~  225 (290)
                      +|||.++++...
T Consensus       216 ~pGG~mvl~~~g  227 (384)
T 2efj_A          216 ISRGRMLLTFIC  227 (384)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             ccCCeEEEEEec
Confidence            999999996543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.24  E-value=4.5e-06  Score=79.16  Aligned_cols=124  Identities=19%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+|.+|||+.+|+|.=+..+|+.++...|++.|+|+..++..+.++...+..                           
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~---------------------------  198 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPE---------------------------  198 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCT---------------------------
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhh---------------------------
Confidence            46899999999999999999998776668999999999999999988763210                           


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc----hh----hhh-hhhc--CCc-------hH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL----SV----TKW-IHLN--WGD-------DG  201 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~----~v----l~~-~~l~--~~~-------~~  201 (290)
                                      ......++.+...|.........+.||.|++-    ..    +.. ..+.  |..       .-
T Consensus       199 ----------------~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~l  262 (359)
T 4fzv_A          199 ----------------EIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVL  262 (359)
T ss_dssp             ----------------TTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHH
T ss_pred             ----------------hhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHH
Confidence                            00112346677777654211234689999972    11    100 0000  111       23


Q ss_pred             HHHHHHHHHhhcCCCcEEEEeeCCC
Q 047406          202 LITLFMRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       202 ~~~~l~~~~~~LkpgG~l~i~~~~~  226 (290)
                      +.++|.+..++|+|||+|+.++-..
T Consensus       263 Q~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          263 QVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            4689999999999999999976543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.21  E-value=1.4e-06  Score=89.04  Aligned_cols=105  Identities=12%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             CCcEEEecCCCChhhHHH--HhH-cC----------CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh
Q 047406           63 GKDCLDIGCNSGIITIQI--AQK-FN----------CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE  129 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~l--a~~-~~----------~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (290)
                      +..|||||||+|.+....  |.. .+          ..+|+++|.|+.++..++....                      
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~----------------------  467 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV----------------------  467 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH----------------------
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh----------------------
Confidence            458999999999996432  221 11          2489999999988765554322                      


Q ss_pred             ccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----CCceeEEEEchhhhhhhhcCCchHHHH
Q 047406          130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----EKYYDAILCLSVTKWIHLNWGDDGLIT  204 (290)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~fD~I~~~~vl~~~~l~~~~~~~~~  204 (290)
                                                 +++.+.|.++.+|..+- ..|     .++.|+|+|-    |+......+....
T Consensus       468 ---------------------------Ng~~d~VtVI~gd~eev-~lp~~~~~~ekVDIIVSE----lmGsfl~nEL~pe  515 (745)
T 3ua3_A          468 ---------------------------RTWKRRVTIIESDMRSL-PGIAKDRGFEQPDIIVSE----LLGSFGDNELSPE  515 (745)
T ss_dssp             ---------------------------HTTTTCSEEEESCGGGH-HHHHHHTTCCCCSEEEEC----CCBTTBGGGSHHH
T ss_pred             ---------------------------cCCCCeEEEEeCchhhc-ccccccCCCCcccEEEEe----ccccccchhccHH
Confidence                                       34556799999998772 222     4789999983    2222222345567


Q ss_pred             HHHHHHhhcCCCcEEEE
Q 047406          205 LFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       205 ~l~~~~~~LkpgG~l~i  221 (290)
                      +|..+.+.|+|||+++=
T Consensus       516 ~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          516 CLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHHTTGGGSCTTCEEES
T ss_pred             HHHHHHHhCCCCcEEEC
Confidence            88888899999998653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.11  E-value=3.4e-06  Score=77.20  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      +.++.+|||||||+|.++..+++..+..+++|+|++-
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            4677899999999999999888766666889999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.10  E-value=5.8e-06  Score=75.64  Aligned_cols=45  Identities=13%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++.+|||||||+|.++..+++....  .+|+|+|+|+.+++.++.+
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~   87 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR   87 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence            57889999999999999999987542  2399999999999999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.07  E-value=1.2e-05  Score=72.22  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=38.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++.
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~   72 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKS   72 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTT
T ss_pred             CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHh
Confidence            46789999999999999999886 44699999999999998866

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.07  E-value=5.1e-06  Score=75.31  Aligned_cols=87  Identities=8%  Similarity=-0.069  Sum_probs=62.4

Q ss_pred             cCC--CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           61 FEG--KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        61 ~~~--~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .++  .+|||+|||+|..++.+|.. + .+|+++|+++.+.+.++.++......                     +    
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~-g-~~V~~vE~~~~~~~l~~~~l~~a~~~---------------------~----  137 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYAD---------------------A----  137 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHH-T-CCEEEEECCHHHHHHHHHHHHHHHHC---------------------T----
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHHHhh---------------------H----
Confidence            456  89999999999999999987 3 48999999999988888877652100                     0    


Q ss_pred             hhHHHHHHhhhcCCCccccC-cCcceeEeecccccCCCCCCCceeEEEEchhh
Q 047406          139 TAAQEEKKAISRNCSPAERN-LFDIVSFKQENFVHGRDSPEKYYDAILCLSVT  190 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl  190 (290)
                                      ..++ +..++.+...|..+.++...+.||+|++....
T Consensus       138 ----------------~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y  174 (258)
T 2oyr_A          138 ----------------EIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF  174 (258)
T ss_dssp             ----------------TTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCC
T ss_pred             ----------------hhhhhhhcCEEEEECCHHHHHHhCcccCCEEEEcCCC
Confidence                            0011 22358899999876433333479999986554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.95  E-value=2.2e-05  Score=74.40  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             eecccccCCCCCCCceeEEEEchhhhhhhhcC-C--------------------------chHHHHHHHHHHhhcCCCcE
Q 047406          166 KQENFVHGRDSPEKYYDAILCLSVTKWIHLNW-G--------------------------DDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       166 ~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~-~--------------------------~~~~~~~l~~~~~~LkpgG~  218 (290)
                      ..+.|.. ...|.+++|+|+|+..+||+.-.- +                          ..++..+|+..++.|+|||.
T Consensus       126 vpgSFy~-rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~  204 (359)
T 1m6e_X          126 VPGSFYG-RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR  204 (359)
T ss_dssp             EESCSSS-CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred             cchhhhh-ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            3444544 356789999999999999974210 0                          12456778999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      ++++.
T Consensus       205 mvl~~  209 (359)
T 1m6e_X          205 MVLTI  209 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99954

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.87  E-value=4.3e-05  Score=70.17  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=74.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc-----CCceEEEEeCCHH--------------------------HHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF-----NCRSILGIDIDSN--------------------------RVADAYWHLRKIV  110 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~-----~~~~i~g~Dis~~--------------------------~l~~a~~~~~~~~  110 (290)
                      ...+|||+||..|.-++.++...     +..+|+++|..+.                          .++.++.++..  
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~--  183 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN--  183 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH--
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH--
Confidence            35699999999999888887654     2568999996421                          23344444433  


Q ss_pred             HhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCC-CCceeEEEEch
Q 047406          111 RTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSP-EKYYDAILCLS  188 (290)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~  188 (290)
                                                                    .++ .+++.+..+++.+.++.. .++||+|+.-.
T Consensus       184 ----------------------------------------------~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa  217 (282)
T 2wk1_A          184 ----------------------------------------------YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG  217 (282)
T ss_dssp             ----------------------------------------------TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC
T ss_pred             ----------------------------------------------cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC
Confidence                                                          334 257999999998755543 46899999532


Q ss_pred             hhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       189 vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                      .. +       +.....|..++..|+|||++++..
T Consensus       218 D~-y-------~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          218 DL-Y-------ESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             CS-H-------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             Cc-c-------ccHHHHHHHHHhhcCCCEEEEEcC
Confidence            21 0       234578999999999999999954

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.86  E-value=0.00026  Score=70.16  Aligned_cols=49  Identities=20%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-------------CceEEEEeCCHHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-------------CRSILGIDIDSNRVADAYWHLRKI  109 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~i~g~Dis~~~l~~a~~~~~~~  109 (290)
                      .++.+|+|.+||+|.+.+....+..             ..+++|+|+++.+...|+.++..+
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh  277 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH  277 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc
Confidence            4578999999999999877654321             236999999999999999987764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.79  E-value=1.8e-05  Score=71.26  Aligned_cols=44  Identities=18%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .++.+|||||||+|.++. ++. .+..+|+++|+|+.+++.++.++
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~   63 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCT
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHh
Confidence            577899999999999999 653 32123999999999999988743

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.76  E-value=8.8e-06  Score=74.62  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=32.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN   97 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~   97 (290)
                      +.++.+|||||||+|.++...++..+..+|.|+|++.+
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            46788999999999999998887777778999999753

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.72  E-value=3.2e-05  Score=64.75  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=34.2

Q ss_pred             HhhhhccCCCcEEEecCCCC-hhhHHHHhHcCCceEEEEeCCHHH
Q 047406           55 VLKKEWFEGKDCLDIGCNSG-IITIQIAQKFNCRSILGIDIDSNR   98 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~i~g~Dis~~~   98 (290)
                      .+.+...++.+|||||||+| .++..|+... ...|+++|+++.+
T Consensus        28 YI~~~~~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~A   71 (153)
T 2k4m_A           28 YIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSH   71 (153)
T ss_dssp             HHHHHSCSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSS
T ss_pred             HHHhcCCCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccc
Confidence            35566667789999999999 6999988743 4589999998743

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.62  E-value=7.6e-05  Score=71.24  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=76.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+.++||-||.|.|..+..+.+. +..+|+.+||++.+++.|++.+.....        ..+                  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~--------~~~------------------  256 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCG--------DVL------------------  256 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC------------CC------------------
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhh--------hhh------------------
Confidence            35689999999999999998875 456899999999999999986432100        000                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhh--cCCchH--HHHHHHHHHhhc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHL--NWGDDG--LITLFMRIWKLL  213 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l--~~~~~~--~~~~l~~~~~~L  213 (290)
                                     ...-..++.+...|....+.   ...+.||+|+.-..-....-  ......  ...++..+.+.|
T Consensus       257 ---------------d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L  321 (381)
T 3c6k_A          257 ---------------DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVL  321 (381)
T ss_dssp             ---------------SSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTE
T ss_pred             ---------------ccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhc
Confidence                           00011246777777654221   12367999997311000000  000011  157889999999


Q ss_pred             CCCcEEEEee
Q 047406          214 RPGGIFVLEP  223 (290)
Q Consensus       214 kpgG~l~i~~  223 (290)
                      +|||+++.+.
T Consensus       322 ~p~GVlv~Q~  331 (381)
T 3c6k_A          322 KQDGKYFTQG  331 (381)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEec
Confidence            9999999854

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.44  E-value=0.00047  Score=65.64  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      +.+|++|||+||++|.++..++++  ...|+|+|+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhh
Confidence            468999999999999999999887  45899999864

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.44  E-value=8.4e-05  Score=68.63  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=33.0

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      ..+.++.+|||+||++|.++..+++..+..+|.|+|+..
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            345688999999999999999988766666899999964

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.42  E-value=0.00042  Score=62.88  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCC
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDID   95 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis   95 (290)
                      .+.++.+|+|+||++|.++...++..+...|.|.++.
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig  106 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG  106 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEc
Confidence            4578999999999999999998775222244555553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.31  E-value=0.00041  Score=63.28  Aligned_cols=46  Identities=24%  Similarity=0.245  Sum_probs=40.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++.+|||++||+|..++.+++.  +.+++|+|+++.+++.|+.++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHH
Confidence            57899999999999999986664  46999999999999999998865

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.27  E-value=0.001  Score=59.80  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      +.++.+|+|+||++|.++...+...+..+|+|+|+..
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            4688899999999999999888877777899999954

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.12  E-value=0.00066  Score=62.35  Aligned_cols=42  Identities=21%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++..++|.+||.|.++..+++.  ..+|+|+|.|+.+++.|+.
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            47889999999999999999987  4599999999999999887

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.09  E-value=0.002  Score=59.56  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=32.6

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS   96 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~   96 (290)
                      .+.++.+||||||++|.++...+...+...|+|+|+..
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence            34678899999999999999888877777899999954

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.48  E-value=0.0055  Score=54.61  Aligned_cols=47  Identities=23%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..+|..|||..||+|..++..++.  +.+++|+|+++.+++.|+.++..
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHh
Confidence            368899999999999998886554  56999999999999999998764

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.16  E-value=0.0027  Score=58.21  Aligned_cols=108  Identities=10%  Similarity=0.026  Sum_probs=75.8

Q ss_pred             hhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           52 RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        52 ~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      .++.+..  ..+..+||+-+|||.+++....  +..+++.+|.++..++..++|+..                       
T Consensus        83 yf~~l~~--~n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~-----------------------  135 (283)
T 2oo3_A           83 YISVIKQ--INLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF-----------------------  135 (283)
T ss_dssp             HHHHHHH--HSSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT-----------------------
T ss_pred             HHHHHHH--hcCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc-----------------------
Confidence            3444444  3567899999999999999766  346999999999998887775421                       


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCC-chHHHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWG-DDGLITLFM  207 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~-~~~~~~~l~  207 (290)
                                                  .+++.+...|....+.   .+..+||+|++-       -.++ +....+++.
T Consensus       136 ----------------------------~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiD-------PPYe~k~~~~~vl~  180 (283)
T 2oo3_A          136 ----------------------------NKKVYVNHTDGVSKLNALLPPPEKRGLIFID-------PSYERKEEYKEIPY  180 (283)
T ss_dssp             ----------------------------TSCEEEECSCHHHHHHHHCSCTTSCEEEEEC-------CCCCSTTHHHHHHH
T ss_pred             ----------------------------CCcEEEEeCcHHHHHHHhcCCCCCccEEEEC-------CCCCCCcHHHHHHH
Confidence                                        2357788888544221   234579999963       3344 346677777


Q ss_pred             HHHh--hcCCCcEEEE
Q 047406          208 RIWK--LLRPGGIFVL  221 (290)
Q Consensus       208 ~~~~--~LkpgG~l~i  221 (290)
                      .+.+  .+.|+|++++
T Consensus       181 ~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          181 AIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HHHHHHHHCTTSEEEE
T ss_pred             HHHHhCccCCCeEEEE
Confidence            7765  4679999999

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.10  E-value=0.017  Score=54.39  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=46.3

Q ss_pred             ccccCCCCCchhh-HHhhhh--cc------CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           41 YRIGQGLNEDPRF-KVLKKE--WF------EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        41 ~~~~~~~~~~~~l-~~l~~~--~~------~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ..++|+...++.+ +.|...  +.      ++.+|||||+|.|.+|..|+....+.+++++|+++..+...+..
T Consensus        28 k~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~  101 (353)
T 1i4w_A           28 FFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK  101 (353)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred             CCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHh
Confidence            3455666666543 323222  22      35889999999999999999865456899999999988776653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.0052  Score=57.18  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=37.9

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.++.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            46789999999886 7888888888766579999999998888764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.04  E-value=0.002  Score=74.23  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK  136 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (290)
                      +..+|||||.|+|..+..+.....     ..+++.+|+|+...+.|+..+...                           
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------------------------- 1292 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------------------------- 1292 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------------------
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------------------
Confidence            567999999999987665554432     237889999987666665543220                           


Q ss_pred             hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                               ++.....|..+.-+.....||+|++.+++|-      ..++...+.++.++|+||
T Consensus      1293 -------------------------di~~~~~d~~~~~~~~~~~ydlvia~~vl~~------t~~~~~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A         1293 -------------------------HVTQGQWDPANPAPGSLGKADLLVCNCALAT------LGDPAVAVGNMAATLKEG 1341 (2512)
T ss_dssp             -------------------------TEEEECCCSSCCCC-----CCEEEEECC--------------------------C
T ss_pred             -------------------------ccccccccccccccCCCCceeEEEEcccccc------cccHHHHHHHHHHhcCCC
Confidence                                     1222222221100113467999999999851      246778899999999999


Q ss_pred             cEEEEee
Q 047406          217 GIFVLEP  223 (290)
Q Consensus       217 G~l~i~~  223 (290)
                      |.+++..
T Consensus      1342 G~l~~~e 1348 (2512)
T 2vz8_A         1342 GFLLLHT 1348 (2512)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            9998854

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.01  E-value=0.0052  Score=56.40  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=37.4

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            46889999999976 7888899988765 99999999998887765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.01  E-value=0.014  Score=54.09  Aligned_cols=57  Identities=18%  Similarity=0.065  Sum_probs=34.3

Q ss_pred             eEeecccccCCCCCCCceeEEEEch---hhhhhhhcC--CchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          164 SFKQENFVHGRDSPEKYYDAILCLS---VTKWIHLNW--GDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       164 ~~~~~d~~~~~~~~~~~fD~I~~~~---vl~~~~l~~--~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                      .++++|+...  ...++||+|+|-.   ..-....+-  ...-.+..+.-+.+.|+|||.|++-
T Consensus       155 ~~IqGD~~~~--~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          155 STLIGDCATV--HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             EEEESCGGGE--EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEcccccc--ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            4588887542  1247899999931   110000000  0113467777788899999999994

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.79  E-value=0.011  Score=55.26  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=38.4

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+...|+++|.++..++.++.
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            346889999999875 7788888888776689999999998887765

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.61  E-value=0.048  Score=50.48  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             eeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhh
Q 047406          163 VSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT  239 (290)
Q Consensus       163 i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  239 (290)
                      +.+..+|..+.++. ....+|+|+--.-.    -. ..+++  ..+|.++.++++|||+|+-                  
T Consensus       168 L~l~~GDa~~~l~~l~~~~~Da~flDgFs----P~-kNPeLWs~e~f~~l~~~~~pgg~laT------------------  224 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVENFKADAVFHDAFS----PY-KNPELWTLDFLSLIKERIDEKGYWVS------------------  224 (308)
T ss_dssp             EEEEESCHHHHGGGCCSCCEEEEEECCSC----TT-TSGGGGSHHHHHHHHTTEEEEEEEEE------------------
T ss_pred             EEEEechHHHHHhhhcccceeEEEeCCCC----cc-cCcccCCHHHHHHHHHHhCCCcEEEE------------------
Confidence            56677776664433 23479999962111    00 01122  6899999999999999987                  


Q ss_pred             hccccccccCchhHHHHHHHHcCCeeeEeccCC
Q 047406          240 ATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSG  272 (290)
Q Consensus       240 ~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~  272 (290)
                              +.....++..|..+||++.+.-+-|
T Consensus       225 --------Ytaag~VRR~L~~aGF~V~k~~G~g  249 (308)
T 3vyw_A          225 --------YSSSLSVRKSLLTLGFKVGSSREIG  249 (308)
T ss_dssp             --------SCCCHHHHHHHHHTTCEEEEEECC-
T ss_pred             --------EeCcHHHHHHHHHCCCEEEecCCCC
Confidence                    4445566668999999998887653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.52  E-value=0.013  Score=54.27  Aligned_cols=45  Identities=20%  Similarity=0.352  Sum_probs=37.5

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+.++..+|+++|.+++.++.++.
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            46889999999875 7788888887765589999999988887764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.42  E-value=0.011  Score=54.40  Aligned_cols=45  Identities=16%  Similarity=0.172  Sum_probs=37.5

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            46889999999876 7788888887765589999999988887765

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.35  E-value=0.41  Score=44.37  Aligned_cols=124  Identities=12%  Similarity=0.110  Sum_probs=77.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      +...|+.+|||.......+....+...++-+|. |++++.-++.+.........      +.      ......      
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~------l~------~~~~~~------  157 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRIS------LG------LSKEDT------  157 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHH------HT------CCSSCC------
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhh------cc------cccccc------
Confidence            457899999999999888877656667888888 88888877766542100000      00      000000      


Q ss_pred             HHHHHhhhcCCCccccC-cCcceeEeecccccC-C------CC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          142 QEEKKAISRNCSPAERN-LFDIVSFKQENFVHG-R------DS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~-~------~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                               ..  .... ...+..++..|+.+. +      .. ......++++-.++.|+.    .+....++..+...
T Consensus       158 ---------~~--~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~----~~~~~~ll~~ia~~  222 (334)
T 1rjd_A          158 ---------AK--SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH----NNESQLLINTIMSK  222 (334)
T ss_dssp             ---------CC--TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC----HHHHHHHHHHHHHH
T ss_pred             ---------cc--cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC----HHHHHHHHHHHHhh
Confidence                     00  0000 124566777777651 1      11 235689999999997664    57888999999988


Q ss_pred             cCCCcEEE
Q 047406          213 LRPGGIFV  220 (290)
Q Consensus       213 LkpgG~l~  220 (290)
                      . |+|.++
T Consensus       223 ~-~~~~~v  229 (334)
T 1rjd_A          223 F-SHGLWI  229 (334)
T ss_dssp             C-SSEEEE
T ss_pred             C-CCcEEE
Confidence            7 667664

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.11  E-value=0.2  Score=46.32  Aligned_cols=44  Identities=9%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .+.+++|+.||.|.++..+.+. +...++++|+++.+++..+.+.
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~   53 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHc
Confidence            4579999999999999887664 3446789999999998887764

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.98  E-value=0.11  Score=48.30  Aligned_cols=44  Identities=9%  Similarity=0.133  Sum_probs=35.7

Q ss_pred             CCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      ..+++|+.||.|.++..+.+... ...++++|+++.+++..+.|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~   46 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF   46 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc
Confidence            35899999999999998877531 236899999999999888764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.94  E-value=0.015  Score=54.58  Aligned_cols=45  Identities=13%  Similarity=0.037  Sum_probs=37.9

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||.+|||. |..++++|+.++..+|+++|.+++.++.++.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            46889999999986 8888899988776589999999988877754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.87  E-value=0.047  Score=51.39  Aligned_cols=45  Identities=13%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.++..++.+++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            56789999999875 6788888888776689999999999888765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.82  E-value=0.022  Score=52.27  Aligned_cols=46  Identities=26%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            457889999999976 7888888888766799999999998888765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.80  E-value=0.066  Score=49.35  Aligned_cols=46  Identities=26%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.+++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            46889999999876 78888888887765699999999998888763

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.70  E-value=0.09  Score=53.04  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             ceeEeecccccCCCCC----CCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhh
Q 047406          162 IVSFKQENFVHGRDSP----EKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRV  235 (290)
Q Consensus       162 ~i~~~~~d~~~~~~~~----~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~  235 (290)
                      .+++..+|..+.++..    ...+|.++.-.-.-  ..   .++  ...+|..+.++++|||.+...             
T Consensus       149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p--~~---np~~w~~~~~~~l~~~~~~g~~~~t~-------------  210 (689)
T 3pvc_A          149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP--AK---NPDMWNEQLFNAMARMTRPGGTFSTF-------------  210 (689)
T ss_dssp             EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC-------CCTTCSHHHHHHHHHHEEEEEEEEES-------------
T ss_pred             EEEEEccCHHHHHhhcccccCCceeEEEECCCCC--CC---ChhhhhHHHHHHHHHHhCCCCEEEec-------------
Confidence            4677778876644332    46899999622110  00   011  167889999999999988762             


Q ss_pred             hhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          236 SETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                                   ......+..+.++||.+.+.-
T Consensus       211 -------------~~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          211 -------------TAAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             -------------CCCHHHHHHHHHTTCEEEEEE
T ss_pred             -------------cCcHHHHHHHHhCCeEEEecc
Confidence                         223455668889999877654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.64  E-value=0.033  Score=51.25  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=35.9

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            46889999999875 6778888887665 69999999998887754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.59  E-value=0.031  Score=52.03  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.+++
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            46789999999975 7888888888776689999999998887754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.47  E-value=0.041  Score=51.06  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=37.0

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.++.
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            46789999999875 7788888888766589999999988887754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.41  E-value=0.074  Score=48.47  Aligned_cols=45  Identities=33%  Similarity=0.459  Sum_probs=37.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+|.+||-.|+|. |..++++|+..+...++++|.+++.++.+++
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~  203 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS  203 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH
Confidence            46889999999975 5678888888877788999999998888765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.37  E-value=0.068  Score=49.61  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             CCCcEEEec-CCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDIG-CNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDiG-cG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +|.+||-.| +|. |..++++|+.....+|+++|.+++.++.++.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            678999998 554 7888898887555699999999988887754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.36  E-value=0.078  Score=48.35  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=36.1

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+|.+||-+|+|+ |..+.++++.....+|+++|.+++.++.++.
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence            46889999999986 4566666776667799999999988877765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.32  E-value=0.058  Score=50.68  Aligned_cols=43  Identities=21%  Similarity=0.115  Sum_probs=38.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~  103 (290)
                      .+|..++|..||.|..+..+++.. +..+|+|+|.++.+++.|+
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            578999999999999999999875 4569999999999999884

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.26  E-value=0.9  Score=41.59  Aligned_cols=110  Identities=12%  Similarity=0.012  Sum_probs=73.6

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..|++||||-=.-...+.. .....++=+| .|.+++..++.+...+                                 
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~---------------------------------  148 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHG---------------------------------  148 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTT---------------------------------
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcC---------------------------------
Confidence            5799999997665444331 1135889999 4999998888775411                                 


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCC-------CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRD-------SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                   ........++..|+.+.+.       ......-++++-.+++|+.    .+....++..+...+.||
T Consensus       149 -------------~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~----~~~~~~ll~~l~~~~~~g  211 (310)
T 2uyo_A          149 -------------VTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLP----ATAQDGLFTEIGGLSAVG  211 (310)
T ss_dssp             -------------CCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGGGSC----HHHHHHHHHHHHHTCCTT
T ss_pred             -------------CCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEEEEechHhhCC----HHHHHHHHHHHHHhCCCC
Confidence                         0012235566666654210       1124567888888887663    567889999999999999


Q ss_pred             cEEEEeeCC
Q 047406          217 GIFVLEPQP  225 (290)
Q Consensus       217 G~l~i~~~~  225 (290)
                      +.++++..+
T Consensus       212 s~l~~d~~~  220 (310)
T 2uyo_A          212 SRIAVETSP  220 (310)
T ss_dssp             CEEEEECCC
T ss_pred             eEEEEEecC
Confidence            999997643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.17  E-value=0.058  Score=50.01  Aligned_cols=45  Identities=24%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.++.
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            46789999999875 6788888887765589999999988887754

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.16  E-value=0.32  Score=45.82  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .+++|+.||.|.++.-+.+. +...+.++|+++.+++..+.|
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N   43 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAIN   43 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHh
Confidence            58999999999999887765 333577999999998877765

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.15  E-value=0.024  Score=52.90  Aligned_cols=45  Identities=16%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            346889999999975 7788888887655 79999999988887764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.12  E-value=0.023  Score=53.04  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.++.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            56789999999764 6788888887764699999999988887764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.10  E-value=0.093  Score=49.95  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=41.8

Q ss_pred             cCCCcEEEecCCCChhhHHHH-hHcCC-ceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIA-QKFNC-RSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la-~~~~~-~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++.+++|+|++.|..+..++ +..+. .+|+++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            578999999999999999887 45543 6999999999999999998875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.04  E-value=0.048  Score=50.62  Aligned_cols=45  Identities=16%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.++.
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            46789999999875 6788888887765589999999988887764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.00  E-value=0.053  Score=50.21  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=36.8

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.++.
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            46789999999875 6788888887765589999999988887764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.93  E-value=0.042  Score=50.36  Aligned_cols=45  Identities=18%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++++..+. +|+++|.+++.++.++.
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            346889999999964 6677777777654 99999999988887754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.90  E-value=0.043  Score=50.33  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHc--CCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKF--NCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~--~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+ +|.+||-+|+|. |..++++|+..  +. +|+++|.+++.++.++.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence            45 899999999975 67888888877  54 79999999998887765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.90  E-value=0.053  Score=50.36  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.++.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            46789999999875 6788888888765589999999988887754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.76  E-value=0.053  Score=49.76  Aligned_cols=45  Identities=13%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh
Confidence            346889999999876 7788888887765 89999999988887755

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.70  E-value=0.071  Score=48.91  Aligned_cols=43  Identities=21%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            789999999964 6777888887665489999999988877754

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.40  E-value=0.58  Score=42.03  Aligned_cols=56  Identities=9%  Similarity=0.064  Sum_probs=40.9

Q ss_pred             CcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          160 FDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       160 ~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                      .+++.++.+++.+.++.     +..++|+|+.-... |       ......++.++..|+|||++++..
T Consensus       157 ~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y-------~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          157 TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y-------EPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H-------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c-------chHHHHHHHHHHHhCCCcEEEEcC
Confidence            36799999999775432     44579999953322 0       334677889999999999999954

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.79  E-value=0.067  Score=49.51  Aligned_cols=44  Identities=14%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH
Confidence            46889999999875 7788888887765 89999999988887755

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.75  E-value=0.074  Score=48.62  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             ccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|+  |..+.++++..+. +|+++|.+++.++.++.
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            46789999999974  6788888887765 89999999988877765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.71  E-value=0.11  Score=43.45  Aligned_cols=43  Identities=14%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|++||..|++  .|.....++...+ .+|+++|.+++.++.++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHH
Confidence            4678999999953  3555666666554 48999999987766553

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.68  E-value=0.077  Score=48.30  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA  102 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a  102 (290)
                      +.+|.+||-.|++  .|..+.++++..+. +|+++|.+++.++.+
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFL  190 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999999983  46777787877665 999999999887776

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=92.63  E-value=1  Score=40.68  Aligned_cols=41  Identities=10%  Similarity=0.070  Sum_probs=31.9

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ++|+|+-||.|.++.-+.+. +-.-+.++|+++.+++.-+.|
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N   41 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESN   41 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHH
Confidence            47999999999988876554 333567999999888776664

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=92.55  E-value=0.14  Score=47.22  Aligned_cols=48  Identities=19%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH---HHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS---NRVADAYWHLRKI  109 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~---~~l~~a~~~~~~~  109 (290)
                      -.+|..|||.-||+|..+....+.  +.+.+|+|+++   ..++.++.++...
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            368899999999999998875554  57899999999   9999998887653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=92.41  E-value=0.41  Score=47.99  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             eeEeecccccCCCCC----CCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhh
Q 047406          163 VSFKQENFVHGRDSP----EKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVS  236 (290)
Q Consensus       163 i~~~~~d~~~~~~~~----~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~  236 (290)
                      +++..+|..+.++..    ...||+++.-.-..  ..   .+++  ..+|.++.++++|||.+....             
T Consensus       158 l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p--~~---np~~w~~~~~~~l~~~~~~g~~~~t~~-------------  219 (676)
T 3ps9_A          158 LDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP--AK---NPDMWTQNLFNAMARLARPGGTLATFT-------------  219 (676)
T ss_dssp             EEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG--GG---CGGGSCHHHHHHHHHHEEEEEEEEESC-------------
T ss_pred             EEEecCCHHHHHHhcccccCCcccEEEECCCCC--cC---ChhhhhHHHHHHHHHHhCCCCEEEecc-------------
Confidence            556667765533321    36799999622110  00   0121  578999999999999988731             


Q ss_pred             hhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          237 ETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                                   .....+..+.++||.+.+.-
T Consensus       220 -------------~~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          220 -------------SAGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             -------------CCHHHHHHHHHHTCEEEEEE
T ss_pred             -------------CcHHHHHHHHhCCeEEEecc
Confidence                         22345557889999877654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.24  E-value=0.098  Score=48.20  Aligned_cols=45  Identities=9%  Similarity=0.093  Sum_probs=34.2

Q ss_pred             ccCC------CcEEEecCCC-Chhh-HHHH-hHcCCceEEEEeCCHH---HHHHHHH
Q 047406           60 WFEG------KDCLDIGCNS-GIIT-IQIA-QKFNCRSILGIDIDSN---RVADAYW  104 (290)
Q Consensus        60 ~~~~------~~vLDiGcG~-G~~~-~~la-~~~~~~~i~g~Dis~~---~l~~a~~  104 (290)
                      +.+|      .+||-+|+|. |..+ +++| +..+..+|+++|.+++   .++.++.
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~  220 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE  220 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH
Confidence            4678      9999999854 6677 7778 7665545999999887   7777654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.08  E-value=0.21  Score=45.86  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=39.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      -.+|..|||.-||+|..+....+ . +.+.+|+|+++..++.++.++..
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~-~-gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAER-E-SRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHH-T-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHH-c-CCCEEEEeCCHHHHHHHHHHHHh
Confidence            36889999999999998887444 3 57999999999999999887654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.61  E-value=0.18  Score=45.43  Aligned_cols=43  Identities=14%  Similarity=0.037  Sum_probs=35.8

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+..+. +|++++ +++.++.+++
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH
Confidence            46889999999964 7888888888776 999999 9888887755

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=91.55  E-value=0.17  Score=45.94  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA  102 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a  102 (290)
                      +.++.+||-.|++  .|..+..++...+. +|+++|.+++.++.+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL  186 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999999983  45666666666554 899999999887766

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.43  E-value=0.38  Score=43.36  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             ceeEeecccccCCC-CCCCceeEEEEchhhh----hhhhc--------C--CchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406          162 IVSFKQENFVHGRD-SPEKYYDAILCLSVTK----WIHLN--------W--GDDGLITLFMRIWKLLRPGGIFVLEPQP  225 (290)
Q Consensus       162 ~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~----~~~l~--------~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (290)
                      .+.+.++|..+.+. .++++||+|++..-..    +....        +  ....+..++.++.++|+|||.+++..+.
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            57889999877322 3457899999953210    00000        0  0012457888999999999999998763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.41  E-value=0.083  Score=48.42  Aligned_cols=46  Identities=26%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             hccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.++.+||-.|+|+  |..+.++++..+..+|+++|.+++.++.++.
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            346889999999984  4567777777623489999999988877643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.28  E-value=0.18  Score=46.14  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CCCcEEEe-cCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDI-GCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDi-GcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +|.+||-. |+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK  193 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            78999999 4553 6788888887665 99999999988887765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.27  E-value=0.18  Score=45.76  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=34.5

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|++  .|..+.++++..+. +|+++|.+++.++.++.
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4678999999943  46777888887654 89999999988877654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.20  E-value=0.089  Score=47.18  Aligned_cols=44  Identities=16%  Similarity=0.173  Sum_probs=35.0

Q ss_pred             ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+  |.|..++++++..+. +|+++|.+++.++.++.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            568899999998  346778888887665 89999999887776643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.18  E-value=0.14  Score=46.40  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=35.0

Q ss_pred             ccCCCcEEEec-CC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIG-CN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.| +| .|..+.++++..+. +|+++|.+++.++.++.
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            46789999999 33 47788888887665 89999999998887764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.16  E-value=0.087  Score=48.20  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +|.+||-+|+|. |..++++|+..+..+|+++|.+++.++.++
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~  206 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR  206 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            889999999864 677788888766548999999987766553

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=90.92  E-value=0.098  Score=48.25  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            346889999999864 6778888887765 79999999988887765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=90.73  E-value=0.42  Score=42.98  Aligned_cols=39  Identities=8%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             cEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           65 DCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        65 ~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +||-.|+ | .|..++++|+..+. +|++++.+++.++.++.
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~  189 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS  189 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            4999997 3 47888999988765 89999999988888765

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.43  E-value=0.97  Score=41.74  Aligned_cols=45  Identities=7%  Similarity=-0.013  Sum_probs=34.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcC-CceE-EEEeCCHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFN-CRSI-LGIDIDSNRVADAYWHL  106 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~-~~~i-~g~Dis~~~l~~a~~~~  106 (290)
                      ...+++|+.||.|.++.-+.+..- ..-+ .++|+++.+++..+.|.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~   55 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF   55 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC
Confidence            346899999999999888766421 2346 79999999988887764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.40  E-value=0.33  Score=44.78  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=35.2

Q ss_pred             ccCCCcEEEec--CCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIG--CNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiG--cG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|  .|.|..++++++..+. +|+++|.+++.++.++.
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            46889999999  3457788888887755 89999999888877654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.05  E-value=0.52  Score=42.50  Aligned_cols=44  Identities=18%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             hccCCCcEEEec-CCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIG-CNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+| +|. |..++++|+..+. +|++++ +++.++.++.
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~  194 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA  194 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH
Confidence            346889999997 554 7888888888765 889887 5555555543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.99  E-value=0.2  Score=46.17  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.++.+||-.|++  .|..+.++++..+. +|+++|.+++.++.++
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  212 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL  212 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHH
Confidence            4678999999973  35677777776654 8999999998877654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=89.22  E-value=0.24  Score=45.01  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|.+||-.|+  |.|..+..+++..+. +|+++|.+++.++.++
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            467899999997  346677777777654 8999999998877765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=89.14  E-value=0.23  Score=45.34  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+  |.|..++.+++..+. +|+++|.+++.++.++.
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            467899999998  456777888877654 89999999988877753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=88.93  E-value=1.4  Score=40.69  Aligned_cols=43  Identities=9%  Similarity=0.027  Sum_probs=33.4

Q ss_pred             CcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~  106 (290)
                      .+++|+-||.|.+..-+.+.... .-+.++|+++.+++.-+.|.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~   47 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF   47 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC
Confidence            47999999999998887665221 34779999999988777653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.32  E-value=0.17  Score=46.36  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=35.3

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|++  .|..+.++++..+. +|++++.+++.++.++.
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            4678999999973  46788888887765 89999999988877665

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=88.26  E-value=0.25  Score=45.13  Aligned_cols=44  Identities=20%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|++  .|..+..+++..+ .+|+++|.+++.++.++.
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHH
Confidence            4678999999983  4667777777655 489999999887766543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=88.05  E-value=1.3  Score=40.23  Aligned_cols=45  Identities=2%  Similarity=-0.139  Sum_probs=33.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCce-EEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRS-ILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-i~g~Dis~~~l~~a~~~  105 (290)
                      ....+++|+-||.|.++.-+.+...... ++++|+++.+++.-+.+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N   59 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR   59 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh
Confidence            3457999999999999888766422222 68999999988776554

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=88.00  E-value=1.2  Score=42.50  Aligned_cols=45  Identities=13%  Similarity=0.053  Sum_probs=35.6

Q ss_pred             hccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+ | .|..++++|+..+. ++++++.++..++.++.
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA  271 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh
Confidence            3467899999997 4 37788888887654 88999999988887754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=87.81  E-value=1.8  Score=40.85  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=34.9

Q ss_pred             hccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-.|+ | .|..++++|+..+ .++++++.+++.++.++.
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh
Confidence            3567899999997 3 3677788888765 488999999988887754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.30  E-value=0.42  Score=43.10  Aligned_cols=44  Identities=16%  Similarity=0.167  Sum_probs=33.2

Q ss_pred             ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+  |.|.....+++..+. +|+++|.+++.++.++.
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            467899999994  345666777776654 89999999988777654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=87.25  E-value=0.22  Score=45.90  Aligned_cols=43  Identities=16%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             cc-CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WF-EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~-~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +. +|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.++
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEAL  221 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence            35 889999999864 6677788887765 8999999987776665

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.16  E-value=0.49  Score=43.42  Aligned_cols=43  Identities=16%  Similarity=-0.000  Sum_probs=32.8

Q ss_pred             ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|.+||-.|++  .|..+..++...+. +|+++|.+++.++.++
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  204 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAE  204 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999843  45667777776554 8999999998887774

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=86.97  E-value=0.53  Score=42.45  Aligned_cols=44  Identities=9%  Similarity=0.035  Sum_probs=33.8

Q ss_pred             ccCCC-cEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGK-DCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~-~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++. +||-+|+  |.|..++++|+..+. +|++++.+++.++.++.
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~  192 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV  192 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            45565 8999997  346788888887765 79999999887777654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.69  E-value=0.81  Score=42.53  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+|. |..++++|+.++...|+++|.+++.++.++.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            46889999999876 7888899988776689999999999888865

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=86.43  E-value=1.2  Score=40.80  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             ceeEeecccccCCC-CCCCceeEEEEchhhhhh-hhcCCc-------hHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          162 IVSFKQENFVHGRD-SPEKYYDAILCLSVTKWI-HLNWGD-------DGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       162 ~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~-~l~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ...+.++|..+.+. .+.++||+|++..-..-. .-.++.       ..+..++..+.++|+|||.+++...
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            46778888765322 346789999995221000 000000       2467889999999999999999765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=86.30  E-value=0.49  Score=43.41  Aligned_cols=44  Identities=20%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|+ | .|..++++++..+. +|+++|.+++.++.++.
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER  210 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            467899999953 3 46777888887655 89999999998887765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=85.93  E-value=0.51  Score=43.60  Aligned_cols=42  Identities=17%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             ccCCCcEEEec-CC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEGKDCLDIG-CN-SGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|.+||-.| +| .|..++++|+..+. +|++++ +++.++.++
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~  224 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVR  224 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHH
Confidence            56789999999 44 47788888887664 899998 676665553

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=85.78  E-value=0.62  Score=42.15  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=33.7

Q ss_pred             ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++.+||-.|+  |.|..+..++...+. +|+++|.+++.++.++.
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK  188 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            467899999996  446677777776654 89999999988777654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=85.73  E-value=0.68  Score=41.80  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=33.5

Q ss_pred             ccCCC-cEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGK-DCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~-~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++. +||-.|+ | .|..++++|+..+. +|++++.+++.++.++.
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~  193 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ  193 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            45665 8999997 3 46778888887764 79999999887777654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=85.56  E-value=0.86  Score=42.12  Aligned_cols=42  Identities=12%  Similarity=-0.009  Sum_probs=32.9

Q ss_pred             cCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|.+||-+|++  .|..++++|+..+. +|+++. +++.++.++.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~  206 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS  206 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH
Confidence            678999999984  57888999988765 788885 8877776654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=84.56  E-value=0.73  Score=42.12  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             ccCC--CcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEG--KDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~--~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.++  .+||-.|++  .|..+..+++..+..+|+++|.+++.++.+..
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            4678  999999984  35666677776554489999999877766654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=84.32  E-value=0.32  Score=44.86  Aligned_cols=41  Identities=7%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCH---HHHHHHHH
Q 047406           63 GKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDS---NRVADAYW  104 (290)
Q Consensus        63 ~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~---~~l~~a~~  104 (290)
                      |.+||-+|+|. |..++++++..+. +|+++|.++   +.++.++.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~  225 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE  225 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH
Confidence            89999999843 5666777777665 899999988   77666543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=84.04  E-value=0.85  Score=41.61  Aligned_cols=43  Identities=19%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|+ | .|..++++++..+. +|+++ .+++.++.++.
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH
Confidence            467899999994 3 37788888887665 89999 88888776654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=83.85  E-value=4.3  Score=37.82  Aligned_cols=98  Identities=11%  Similarity=0.008  Sum_probs=63.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+||.++.+.|.++..++..    .++.+.=|--+....+.|+..                                 
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~---------------------------------   80 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRL---------------------------------   80 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHH---------------------------------
Confidence            5578999999999999887754    234443244444555565554                                 


Q ss_pred             HHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          142 QEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                     +++.. .+.+..     .+......||+|+..       +......+...|.++...|.||+.++
T Consensus        81 ---------------~~~~~~~~~~~~-----~~~~~~~~~~~v~~~-------lpk~~~~l~~~L~~l~~~l~~~~~i~  133 (375)
T 4dcm_A           81 ---------------NGIDESSVKFLD-----STADYPQQPGVVLIK-------VPKTLALLEQQLRALRKVVTSDTRII  133 (375)
T ss_dssp             ---------------TTCCGGGSEEEE-----TTSCCCSSCSEEEEE-------CCSCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred             ---------------cCCCccceEecc-----cccccccCCCEEEEE-------cCCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                           22221 133321     223355789999852       33345667888999999999999998


Q ss_pred             Eee
Q 047406          221 LEP  223 (290)
Q Consensus       221 i~~  223 (290)
                      +..
T Consensus       134 ~~g  136 (375)
T 4dcm_A          134 AGA  136 (375)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            743

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=83.19  E-value=0.48  Score=43.77  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=33.5

Q ss_pred             cc-CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WF-EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~-~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +. +|.+||-+|+|. |..++++|+..+. +|+++|.+++.++.+.
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEAL  228 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            35 889999999764 6677777777654 8999999988776665

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=81.65  E-value=32  Score=31.59  Aligned_cols=174  Identities=7%  Similarity=-0.007  Sum_probs=89.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +...|+.+|||.=.-...+... .+...++=+|. |+.++.=+..+......... ...  ...-+              
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~-lg~--~~~~~--------------  151 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSP-ILE--LHSED--------------  151 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHH-HHH--HSSSS--------------
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhh-hcc--ccccc--------------
Confidence            4578999999987777776543 13457888888 77776555444321000000 000  00000              


Q ss_pred             HHHHHHhhhcCCCccccC-cCcceeEeecccccC--C-------CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406          141 AQEEKKAISRNCSPAERN-LFDIVSFKQENFVHG--R-------DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW  210 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~--~-------~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~  210 (290)
                                ........ ......++..|+.+.  +       .......-++++-.++.|+    ..+....+++.+.
T Consensus       152 ----------~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL----~~~~~~~ll~~ia  217 (334)
T 3iei_A          152 ----------TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM----TPEQSANLLKWAA  217 (334)
T ss_dssp             ----------SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS----CHHHHHHHHHHHH
T ss_pred             ----------ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC----CHHHHHHHHHHHH
Confidence                      00000000 123466777777551  1       1233556788888888555    4678889999999


Q ss_pred             hhcCCCcEEEEeeC-CCchhhhhhhhhhhhh---cccccc-ccCchhHHHHHHHHcCCeeeEec
Q 047406          211 KLLRPGGIFVLEPQ-PWVSYEKNRRVSETTA---TNFQNI-KLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       211 ~~LkpgG~l~i~~~-~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      ....++..++++.. +...+.  +.+...+.   ..+..+ .+.+.+-+...+..+||+.++..
T Consensus       218 ~~f~~~~~i~yE~i~p~d~fg--~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~  279 (334)
T 3iei_A          218 NSFERAMFINYEQVNMGDRFG--QIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV  279 (334)
T ss_dssp             HHCSSEEEEEEEECCTTSHHH--HHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred             HhCCCceEEEEeccCCCCHHH--HHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence            88765555555432 111111  11111111   122232 22333444557889999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=81.64  E-value=13  Score=28.95  Aligned_cols=39  Identities=15%  Similarity=0.214  Sum_probs=26.8

Q ss_pred             CcEEEecCCCChhhHHHHhHc--CCceEEEEeCCHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKF--NCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~--~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+|+=+|||  .++..+++..  ....|+++|.+++.++.+..
T Consensus         8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE   48 (140)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            578888875  4444444433  24589999999988876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	3e-10
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	1e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	3e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.001
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.002
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.003
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.003
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.004

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 26/214 (12%), Positives = 53/214 (24%), Gaps = 24/214 (11%)

Query: 54  KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTE 113
           +        G+  +DIG    +  +  A   +   I   D       +    L++     
Sbjct: 46  QTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQE--EPG 102

Query: 114 HNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG 173
                  +     +IE      ++       +          +       S         
Sbjct: 103 AFNWSMYSQ-HACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSP-------- 153

Query: 174 RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNR 233
                   DA++     + +  +            I  LLRPGG  +L      S+    
Sbjct: 154 ---APLPADALVSAFCLEAVSPDLAS--FQRALDHITTLLRPGGHLLLIGALEESWYLAG 208

Query: 234 RVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE 267
               T            +E     L + G++  +
Sbjct: 209 EARLTVV-------PVSEEEVREALVRSGYKVRD 235

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 47/223 (21%)

Query: 33  GNYKNYYGYRIGQGLNEDPRFKVLKK-EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILG 91
            +YK +  Y  G+ L  +    V ++ +  +G   +D+G   G   +Q A +  C    G
Sbjct: 187 KHYKAFSNYVYGE-LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFG 245

Query: 92  IDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRN 151
            +I  +                     +    +      G  L                 
Sbjct: 246 CEIMDDASDLT--------------ILQYEELKKRCKLYGMRLNNV-------------- 277

Query: 152 CSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK 211
                       SF   N              ++       ++    D+ L     +I +
Sbjct: 278 ------EFSLKKSFVDNNR----------VAELIPQCDVILVNNFLFDEDLNKKVEKILQ 321

Query: 212 LLRPGG-IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEF 253
             + G  I  L+    ++Y+ N    E      +  +   KE 
Sbjct: 322 TAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKED 364

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 42/280 (15%), Positives = 64/280 (22%), Gaps = 47/280 (16%)

Query: 25  KGKDVF-----PFGNYKNYYGYRIGQGLNEDPR-------FKVLKKEWFEGKDCLDIGCN 72
            G D +     P      YY +        +          K       +G   +DIG  
Sbjct: 2   TGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61

Query: 73  SGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132
             I  + +A   + + I   D       +    L+K             A  +E      
Sbjct: 62  PTIYQV-LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELE------ 114

Query: 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS----PEKYYDAILCLS 188
                           S      E  L   V    +  VH  +          D +L L 
Sbjct: 115 --------------GNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL 160

Query: 189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL 248
                      D        +  LL+PGG  V      +            +        
Sbjct: 161 A--MECACCSLDAYRAALCNLASLLKPGGHLVT--TVTLRLPSYMVGKREFSCVA----- 211

Query: 249 YPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLF 288
             K   E  +   GF  +E +     S S T         
Sbjct: 212 LEKGEVEQAVLDAGF-DIEQLLHSPQSYSVTNAANNGVCC 250

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 32  FGNYKNYYGYRIGQGLNEDPRFKVLK------KEWFEGKDCLDIGCNSGIITIQIAQKFN 85
           F +Y +Y  +   + L +  R    +      K+ F+ K  LD+GC +GI+++  A+   
Sbjct: 4   FDSYDHYGIHE--EMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA 61

Query: 86  CRSILGIDIDSNRVADAYWH 105
              ++G+D+ S         
Sbjct: 62  KH-VIGVDMSSIIEMAKELV 80

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 62  EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108
           +    +D+G   G + +Q+A   NC+   G++        A    R+
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 197

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 57  KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105
            +  F+ K  LD+G  +GI+ +  A K   R ++GI+  S         
Sbjct: 28  NRHLFKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECSSISDYAVKIV 75

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 57  KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108
               F+ K  LD+GC +GI+++  A+    + +LG+D               
Sbjct: 30  NPHIFKDKVVLDVGCGTGILSMFAAKAGAKK-VLGVDQSEILYQAMDIIRLN 80

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 61  FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADA 102
             G+  +D G  +GI+           S+   DID + +  A
Sbjct: 47  IGGRSVIDAGTGNGILACGSY-LLGAESVTAFDIDPDAIETA 87

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 39  YGYRIGQGLNE-DPR--------FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
           YG ++  G  E  P          K  + +    +  L +G  SG     +A   +   I
Sbjct: 24  YGEKVFDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGII 83

Query: 90  LGIDIDSNRVADAYWHLRKIVRTEHN 115
             ++  +         L ++VR  +N
Sbjct: 84  YAVEYSAKPFEK----LLELVRERNN 105

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 9/132 (6%)

Query: 136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHL 195
                 +       R    A R    ++  K          P+ ++D IL  +       
Sbjct: 77  DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEET 136

Query: 196 NWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQE 255
                    +    ++LL+PGG+               +        + +I +  +E Q 
Sbjct: 137 WHTHQ-FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSK--------YSDITIMFEETQV 187

Query: 256 ILLDKIGFRTVE 267
             L + GFR   
Sbjct: 188 PALLEAGFRREN 199

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 58  KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105
             +F   + L++G   G  T ++ + FN   I  ++     ++ A   
Sbjct: 16  TPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGR 61

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 31/242 (12%)

Query: 54  KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTE 113
           +   +      D LD+ C +G +T  +  KF     + +  +    A+  +  + +    
Sbjct: 29  EKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRL 88

Query: 114 HNEKRRANASRVEVIEK---GDGLEKNVTAAQEEK--KAISRNCSPAERNLFDIVSFKQE 168
             +         +        D     + +   +K  KA+S +       +FDI S+ + 
Sbjct: 89  ACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148

Query: 169 NFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVS 228
           + V G +      D +       +   N  +D L+++++           FV + + +  
Sbjct: 149 SQVLGNNDFNYDDDEVF------YYWENQFEDDLVSMYIS---------FFVRDGEFY-- 191

Query: 229 YEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLF 288
               +R  E         + Y +E  E  L       ++ +        +    R  +L 
Sbjct: 192 ----KRFDEE-----HEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLV 242

Query: 289 RK 290
           + 
Sbjct: 243 KL 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.76
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.74
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.73
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.73
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.72
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.71
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.71
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.71
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.68
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.67
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.65
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.62
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.59
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.58
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.58
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.57
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.52
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.52
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.48
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.45
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.44
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.41
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.4
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.39
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.38
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.37
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.35
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.34
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.34
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.31
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.28
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.28
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.25
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.23
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.2
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.2
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.2
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.17
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.16
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.16
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.1
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.09
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.09
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.02
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.01
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.99
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.95
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.91
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.91
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.89
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.87
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.82
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.8
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.8
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.79
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.6
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.54
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.54
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.49
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.49
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.44
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.38
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.37
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.31
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.25
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.23
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.12
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.1
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.07
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.04
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.03
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.92
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.85
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.82
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.57
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.19
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.13
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.06
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.95
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.95
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.86
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.61
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.49
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.47
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.35
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.29
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.09
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.75
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.68
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.27
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.04
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.84
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.54
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.42
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.41
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.4
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.15
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.72
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.71
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.46
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.0
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.62
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.42
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	91.88
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.87
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.8
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.48
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.25
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.73
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.27
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.91
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.74
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.66
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.46

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=6.2e-20  Score=158.72  Aligned_cols=152  Identities=11%  Similarity=0.220  Sum_probs=111.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||||||+|.++..+++..  .+|+|+|+|+++++.|++.+..                              
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~------------------------------   59 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG------------------------------   59 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccc------------------------------
Confidence            34678999999999999999998873  4899999999999999987765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+ ..++.|.+.|+.+ ++.+.++||+|+|..+++|+      ++...++.++.++|+|||+
T Consensus        60 ------------------~~-~~~i~~~~~d~~~-l~~~~~~fD~v~~~~~l~~~------~d~~~~l~~~~r~LkpgG~  113 (231)
T d1vl5a_          60 ------------------NG-HQQVEYVQGDAEQ-MPFTDERFHIVTCRIAAHHF------PNPASFVSEAYRVLKKGGQ  113 (231)
T ss_dssp             ------------------TT-CCSEEEEECCC-C-CCSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEE
T ss_pred             ------------------cc-ccccccccccccc-cccccccccccccccccccc------CCHHHHHHHHHHhcCCCcE
Confidence                              22 2368999999876 67778999999999999877      4678999999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhh--ccccccc-cCchhHHHHHHHHcCCeeeEec
Q 047406          219 FVLEPQPWVSYEKNRRVSETTA--TNFQNIK-LYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      +++....+..............  ....+.. +.+.++.. +++++||+++++.
T Consensus       114 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~  166 (231)
T d1vl5a_         114 LLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLK-MLEEAGFELEELH  166 (231)
T ss_dssp             EEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHH-HHHHHTCEEEEEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHH-HHHHCCCEEEEEE
Confidence            9996433222111111111111  1222333 44455555 8999999987653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.80  E-value=1.6e-19  Score=162.30  Aligned_cols=154  Identities=15%  Similarity=0.131  Sum_probs=113.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..++++++ .+|+|+|+|+.+++.|+.....                               
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~-------------------------------  112 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQ-------------------------------  112 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhccccc-------------------------------
Confidence            46889999999999999999998764 4899999999999999997765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+++.|.+.|+.+ ++.++++||+|+|..+++|+      ++...+++++.++|+|||+|
T Consensus       113 -----------------~gl~~~v~~~~~d~~~-l~~~~~sfD~V~~~~~l~h~------~d~~~~l~~~~~~LkpgG~l  168 (282)
T d2o57a1         113 -----------------AGLADNITVKYGSFLE-IPCEDNSYDFIWSQDAFLHS------PDKLKVFQECARVLKPRGVM  168 (282)
T ss_dssp             -----------------HTCTTTEEEEECCTTS-CSSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------cccccccccccccccc-ccccccccchhhccchhhhc------cCHHHHHHHHHHhcCCCcEE
Confidence                             4556679999999977 57788999999999999665      35678999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++...............................+.+ +++++||+.++...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         169 AITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRS-LAKECGLVTLRTFS  218 (282)
T ss_dssp             EEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHH-HHHHTTEEEEEEEE
T ss_pred             EEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHH-HHHHcCCceEEEEE
Confidence            996432211111111111111111111223455555 89999999877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=5.9e-19  Score=154.06  Aligned_cols=151  Identities=15%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.+|.+|||||||+|.++..+++..  .+|+|+|+|+.+++.|++++..                              
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~------------------------------   60 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQE------------------------------   60 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcc------------------------------
Confidence            35799999999999999999999874  4899999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ .++.+.+.|..+ ++.++++||+|+|..+++|+      .++..+++++.++|+|||+
T Consensus        61 ------------------~~~-~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~------~d~~~~l~~~~r~LkpgG~  114 (234)
T d1xxla_          61 ------------------KGV-ENVRFQQGTAES-LPFPDDSFDIITCRYAAHHF------SDVRKAVREVARVLKQDGR  114 (234)
T ss_dssp             ------------------HTC-CSEEEEECBTTB-CCSCTTCEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEE
T ss_pred             ------------------ccc-cccccccccccc-ccccccccceeeeeceeecc------cCHHHHHHHHHHeeCCCcE
Confidence                              222 358999999876 67788999999999999876      4678999999999999999


Q ss_pred             EEEeeCCCchhhhhhhhhhhhh--cccccccc-CchhHHHHHHHHcCCeeeEe
Q 047406          219 FVLEPQPWVSYEKNRRVSETTA--TNFQNIKL-YPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       219 l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      +++.................+.  ....+... ...++.. +++++||.+..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gf~~~~~  166 (234)
T d1xxla_         115 FLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQA-MFSANQLAYQDI  166 (234)
T ss_dssp             EEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHH-HHHHTTEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHH-HHHHCCCceeEE
Confidence            9884321111000001111111  01122233 3344444 899999987654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3e-19  Score=157.19  Aligned_cols=162  Identities=19%  Similarity=0.262  Sum_probs=117.3

Q ss_pred             hhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh
Q 047406           52 RFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE  129 (290)
Q Consensus        52 ~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (290)
                      .+..+...  +.+|.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++...                     
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~---------------------   78 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEE---------------------   78 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHH---------------------
Confidence            34444433  57899999999999999999988765 4899999999999999997765                     


Q ss_pred             ccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                                                 .++.++++|...|+.+.  .++++||+|+|..+++|+      .+...++.++
T Consensus        79 ---------------------------~gl~~~v~~~~~d~~~~--~~~~~fD~v~~~~~~~~~------~d~~~~l~~~  123 (245)
T d1nkva_          79 ---------------------------LGVSERVHFIHNDAAGY--VANEKCDVAACVGATWIA------GGFAGAEELL  123 (245)
T ss_dssp             ---------------------------TTCTTTEEEEESCCTTC--CCSSCEEEEEEESCGGGT------SSSHHHHHHH
T ss_pred             ---------------------------hhccccchhhhhHHhhc--cccCceeEEEEEehhhcc------CCHHHHHHHH
Confidence                                       45566799999998773  356899999999999766      3568899999


Q ss_pred             HhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          210 WKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .++|+|||++++..+.|...................-......+.. +++++||++++....
T Consensus       124 ~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         124 AQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVG-AFDDLGYDVVEMVLA  184 (245)
T ss_dssp             TTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHH-HHHTTTBCCCEEEEC
T ss_pred             HHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHH-HHHHcCCEEEEEEeC
Confidence            9999999999997654433222222222221111111123344544 899999998876443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=1.7e-18  Score=150.45  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=93.0

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHc--CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKF--NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      +.+..+++.+|||||||+|..+..+++..  +..+|+|+|+|+.+++.|++++..                         
T Consensus        33 ~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-------------------------   87 (225)
T d1im8a_          33 AERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-------------------------   87 (225)
T ss_dssp             HHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-------------------------
T ss_pred             HHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-------------------------
Confidence            34456889999999999999999998764  567999999999999999997654                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                             .+....+.+...|+.+   .+...+|+|+|..+++|++    .++...+|+++++.|
T Consensus        88 -----------------------~~~~~~~~~~~~d~~~---~~~~~~d~i~~~~~l~~~~----~~d~~~~l~~i~~~L  137 (225)
T d1im8a_          88 -----------------------YHSEIPVEILCNDIRH---VEIKNASMVILNFTLQFLP----PEDRIALLTKIYEGL  137 (225)
T ss_dssp             -----------------------SCCSSCEEEECSCTTT---CCCCSEEEEEEESCGGGSC----GGGHHHHHHHHHHHE
T ss_pred             -----------------------hcccchhhhccchhhc---cccccceeeEEeeeccccC----hhhHHHHHHHHHHhC
Confidence                                   2333457777777754   3557899999999998775    367889999999999


Q ss_pred             CCCcEEEEee
Q 047406          214 RPGGIFVLEP  223 (290)
Q Consensus       214 kpgG~l~i~~  223 (290)
                      +|||.+++..
T Consensus       138 kpgG~li~~~  147 (225)
T d1im8a_         138 NPNGVLVLSE  147 (225)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCceeeccc
Confidence            9999999964

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.76  E-value=3.4e-18  Score=150.02  Aligned_cols=135  Identities=19%  Similarity=0.369  Sum_probs=97.2

Q ss_pred             cccccccccccccCCCCCchhh----HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           32 FGNYKNYYGYRIGQGLNEDPRF----KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l----~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      |+.+..+|+..+..........    +.+.+.-+++.+|||||||+|.++..+++.  +.+|+|+|+|+.+++.|++++.
T Consensus         3 y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~   80 (246)
T d1y8ca_           3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhcccccc
Confidence            3445666664443333322222    233334456789999999999999999987  3489999999999999998765


Q ss_pred             HHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc
Q 047406          108 KIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL  187 (290)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~  187 (290)
                      .                                                .++  ++.+.+.|+.+. +. .++||+|+|.
T Consensus        81 ~------------------------------------------------~~~--~v~~~~~d~~~~-~~-~~~fD~i~~~  108 (246)
T d1y8ca_          81 S------------------------------------------------QGL--KPRLACQDISNL-NI-NRKFDLITCC  108 (246)
T ss_dssp             H------------------------------------------------TTC--CCEEECCCGGGC-CC-SCCEEEEEEC
T ss_pred             c------------------------------------------------cCc--cceeeccchhhh-cc-ccccccccee
Confidence            4                                                222  488999998773 33 4689999996


Q ss_pred             -hhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406          188 -SVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       188 -~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                       .+++|+.   ..+++..++++++++|+|||.|++..
T Consensus       109 ~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         109 LDSTNYII---DSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             TTGGGGCC---SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eeeeeccC---CHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence             4554432   34688899999999999999999843

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.4e-18  Score=153.74  Aligned_cols=182  Identities=16%  Similarity=0.213  Sum_probs=131.6

Q ss_pred             hhhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhh-ccCCCcEEEecCCCChhhHHHH
Q 047406           13 EEKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKE-WFEGKDCLDIGCNSGIITIQIA   81 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~-~~~~~~vLDiGcG~G~~~~~la   81 (290)
                      .++-.....++.++. .+|+.| +.+||+..|  .++..   ||      .+..... ...+.+|||+|||+|.+++.++
T Consensus        51 ~~~~~~~~~rr~~g~PlqYI~G-~~~F~~~~~--~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la  127 (274)
T d2b3ta1          51 CQQLDALLTRRRDGEPIAHLTG-VREFWSLPL--FVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALA  127 (274)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHSC-EEEETTEEE--ECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcChhhhcC-cEEEeeeEE--EEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHH
Confidence            344455555555565 999999 789999887  45444   33      2222222 2456789999999999999999


Q ss_pred             hHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCc
Q 047406           82 QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFD  161 (290)
Q Consensus        82 ~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (290)
                      ...|...|+++|+|+.+++.|++|+..                                                .++ .
T Consensus       128 ~~~p~~~v~avDis~~Al~~A~~Na~~------------------------------------------------~~~-~  158 (274)
T d2b3ta1         128 SERPDCEIIAVDRMPDAVSLAQRNAQH------------------------------------------------LAI-K  158 (274)
T ss_dssp             HHCTTSEEEEECSSHHHHHHHHHHHHH------------------------------------------------HTC-C
T ss_pred             hhCCcceeeeccchhHHHhHHHHHHHH------------------------------------------------hCc-c
Confidence            999999999999999999999999876                                                233 3


Q ss_pred             ceeEeecccccCCCCCCCceeEEEEchh-------------hhh---hhhcCCch---HHHHHHHHHHhhcCCCcEEEEe
Q 047406          162 IVSFKQENFVHGRDSPEKYYDAILCLSV-------------TKW---IHLNWGDD---GLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~v-------------l~~---~~l~~~~~---~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                      ++.+.+.|+.+..  +..+||+|+|+.-             +.|   ..++.+++   ...+++.+..++|+|||.++++
T Consensus       159 ~v~~~~~d~~~~~--~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         159 NIHILQSDWFSAL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             SEEEECCSTTGGG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cceeeeccccccc--CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            5899999998743  4578999999621             111   12222232   3468999999999999999998


Q ss_pred             eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      .+..                       ..+....++.+.||..++++.+
T Consensus       237 ig~~-----------------------q~~~v~~~l~~~gf~~i~~~kD  262 (274)
T d2b3ta1         237 HGWQ-----------------------QGEAVRQAFILAGYHDVETCRD  262 (274)
T ss_dssp             CCSS-----------------------CHHHHHHHHHHTTCTTCCEEEC
T ss_pred             ECch-----------------------HHHHHHHHHHHCCCCeEEEEEC
Confidence            7521                       1223344788999998887776

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.6e-18  Score=145.77  Aligned_cols=147  Identities=17%  Similarity=0.156  Sum_probs=107.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..++...+ .+|+|+|+|+.+++.|++.+..                                
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~--------------------------------  105 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGE--------------------------------  105 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGG--------------------------------
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccc--------------------------------
Confidence            4567999999999999988776654 4899999999999999986543                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .+ ..++.|.+.|+.+ ++.+.++||+|+|..+++|+.    ++....++.++.++|+|||.++
T Consensus       106 ----------------~~-~~~~~f~~~d~~~-~~~~~~~fD~I~~~~~l~h~~----~~~~~~~l~~i~~~Lk~~G~~~  163 (222)
T d2ex4a1         106 ----------------EG-KRVRNYFCCGLQD-FTPEPDSYDVIWIQWVIGHLT----DQHLAEFLRRCKGSLRPNGIIV  163 (222)
T ss_dssp             ----------------GG-GGEEEEEECCGGG-CCCCSSCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cc-ccccccccccccc-cccccccccccccccccccch----hhhhhhHHHHHHHhcCCcceEE
Confidence                            11 1357899999877 466678999999999997653    4567789999999999999999


Q ss_pred             EeeCCCchhhhhhhhhhhhhcccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNRRVSETTATNFQNI-KLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +.......        ........+. ....+++.+ +++++||++++....
T Consensus       164 i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-l~~~aGf~ii~~~~q  206 (222)
T d2ex4a1         164 IKDNMAQE--------GVILDDVDSSVCRDLDVVRR-IICSAGLSLLAEERQ  206 (222)
T ss_dssp             EEEEEBSS--------SEEEETTTTEEEEBHHHHHH-HHHHTTCCEEEEEEC
T ss_pred             EEEccccc--------ccccccCCceeeCCHHHHHH-HHHHcCCEEEEEEEe
Confidence            96431110        0000111111 223445544 899999999987766

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.5e-17  Score=141.94  Aligned_cols=142  Identities=13%  Similarity=0.216  Sum_probs=103.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..++      +++|+|+|+.+++.|+..                                  
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------------------------------   73 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------------------------------   73 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------------------------------
T ss_pred             hCCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------------------------------
Confidence            3566799999999999877653      468999999999988752                                  


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                            ++.+.+.|+.+ ++.++++||+|+|..+++|+      +++..++.++.++|+|||.+
T Consensus        74 ----------------------~~~~~~~d~~~-l~~~~~~fD~I~~~~~l~h~------~d~~~~l~~~~~~L~pgG~l  124 (208)
T d1vlma_          74 ----------------------GVFVLKGTAEN-LPLKDESFDFALMVTTICFV------DDPERALKEAYRILKKGGYL  124 (208)
T ss_dssp             ----------------------TCEEEECBTTB-CCSCTTCEEEEEEESCGGGS------SCHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------------ccccccccccc-cccccccccccccccccccc------cccccchhhhhhcCCCCceE
Confidence                                  37788888866 57778899999999999876      35788999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhh-hccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWVSYEKNRRVSETT-ATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      ++..++..+........... ...+.+..+.+......+++++||+++++..
T Consensus       125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         125 IVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             EEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence            99776554432221111111 1123344444444444489999999887654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.2e-17  Score=142.74  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=93.5

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.+.++++.+|||||||+|.++..+++.  +.+|+|+|+|+.+++.|++....                           
T Consensus        31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~---------------------------   81 (226)
T d1ve3a1          31 LMKYMKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKS---------------------------   81 (226)
T ss_dssp             HHHSCCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHhcCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcc---------------------------
Confidence            4455678899999999999999999885  56899999999999999987654                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                           .+  ..+.+...|..+ ++.+.++||+|+|..+++|+.    ..++..++.++.++|+|
T Consensus        82 ---------------------~~--~~~~~~~~d~~~-l~~~~~~fD~I~~~~~l~~~~----~~d~~~~l~~i~~~Lkp  133 (226)
T d1ve3a1          82 ---------------------RE--SNVEFIVGDARK-LSFEDKTFDYVIFIDSIVHFE----PLELNQVFKEVRRVLKP  133 (226)
T ss_dssp             ---------------------TT--CCCEEEECCTTS-CCSCTTCEEEEEEESCGGGCC----HHHHHHHHHHHHHHEEE
T ss_pred             ---------------------cc--cccccccccccc-ccccCcCceEEEEecchhhCC----hhHHHHHHHHHHHHcCc
Confidence                                 11  235677788766 577789999999999998763    35788999999999999


Q ss_pred             CcEEEEeeCC
Q 047406          216 GGIFVLEPQP  225 (290)
Q Consensus       216 gG~l~i~~~~  225 (290)
                      ||++++...+
T Consensus       134 gG~lii~~~~  143 (226)
T d1ve3a1         134 SGKFIMYFTD  143 (226)
T ss_dssp             EEEEEEEEEC
T ss_pred             CcEEEEEEcC
Confidence            9999997654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.6e-17  Score=143.65  Aligned_cols=108  Identities=26%  Similarity=0.538  Sum_probs=87.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|++++..                                
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~--------------------------------   85 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE--------------------------------   85 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccccccccc--------------------------------
Confidence            34578999999999999999886  34899999999999999997654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++  ++.+.+.|+.+ ++.+ +.||+|+|. .+++|++    .++...+|.+++++|+|||++
T Consensus        86 ----------------~~~--~i~~~~~d~~~-l~~~-~~fD~I~~~~~~~~~~~----~~~~~~~L~~~~~~LkpgG~l  141 (251)
T d1wzna1          86 ----------------RNL--KIEFLQGDVLE-IAFK-NEFDAVTMFFSTIMYFD----EEDLRKLFSKVAEALKPGGVF  141 (251)
T ss_dssp             ----------------TTC--CCEEEESCGGG-CCCC-SCEEEEEECSSGGGGSC----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------ccc--cchheehhhhh-cccc-cccchHhhhhhhhhcCC----hHHHHHHHHHHHHHcCCCcEE
Confidence                            222  58899999877 4444 689999997 4555443    367789999999999999999


Q ss_pred             EEeeCCC
Q 047406          220 VLEPQPW  226 (290)
Q Consensus       220 ~i~~~~~  226 (290)
                      ++..++|
T Consensus       142 ii~~~~~  148 (251)
T d1wzna1         142 ITDFPCW  148 (251)
T ss_dssp             EEEEEC-
T ss_pred             EEEeccc
Confidence            9976554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.72  E-value=2.1e-17  Score=143.76  Aligned_cols=150  Identities=18%  Similarity=0.218  Sum_probs=106.6

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL  134 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (290)
                      .+.+. .++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|+...                            
T Consensus        14 ~~~~~-~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~----------------------------   62 (225)
T d2p7ia1          14 AFTPF-FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRL----------------------------   62 (225)
T ss_dssp             HHGGG-CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHS----------------------------
T ss_pred             Hhhhh-CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhccc----------------------------
Confidence            33343 56789999999999999998876  348999999999999997631                            


Q ss_pred             chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH-hhc
Q 047406          135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW-KLL  213 (290)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~-~~L  213 (290)
                                               ..++.+...++.+. + ++++||+|+|..+++|+      ++...++.+++ ++|
T Consensus        63 -------------------------~~~~~~~~~~~~~~-~-~~~~fD~I~~~~vleh~------~d~~~~l~~i~~~~L  109 (225)
T d2p7ia1          63 -------------------------KDGITYIHSRFEDA-Q-LPRRYDNIVLTHVLEHI------DDPVALLKRINDDWL  109 (225)
T ss_dssp             -------------------------CSCEEEEESCGGGC-C-CSSCEEEEEEESCGGGC------SSHHHHHHHHHHTTE
T ss_pred             -------------------------cccccccccccccc-c-cccccccccccceeEec------CCHHHHHHHHHHHhc
Confidence                                     12578888887663 3 35789999999999876      46788899998 799


Q ss_pred             CCCcEEEEeeCCCchhhhhhhhhhhhh----------ccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          214 RPGGIFVLEPQPWVSYEKNRRVSETTA----------TNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       214 kpgG~l~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      +|||.+++..+++.+............          ....+...++.+..+.++.++||++++.
T Consensus       110 k~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~  174 (225)
T d2p7ia1         110 AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR  174 (225)
T ss_dssp             EEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence            999999998776554432211110000          0122333334333444899999998874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=2.7e-17  Score=146.65  Aligned_cols=145  Identities=16%  Similarity=0.219  Sum_probs=106.4

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+|||+|||+|.++..++..+. ..|+++|+|+.+++.|++.+..                                 
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~---------------------------------  138 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG---------------------------------  138 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT---------------------------------
T ss_pred             CCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc---------------------------------
Confidence            567999999999999998877654 3899999999999999875322                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                        ...+.|.+.|+.+ ++.+.+.||+|+|..+++|+.    ++++..+|+++.+.|+|||++++
T Consensus       139 ------------------~~~~~~~~~d~~~-~~~~~~~fD~I~~~~vl~hl~----d~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         139 ------------------MPVGKFILASMET-ATLPPNTYDLIVIQWTAIYLT----DADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             ------------------SSEEEEEESCGGG-CCCCSSCEEEEEEESCGGGSC----HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------------------cccceeEEccccc-cccCCCccceEEeeccccccc----hhhhHHHHHHHHHhcCCCcEEEE
Confidence                              2347888999876 455678999999999997763    46678999999999999999999


Q ss_pred             eeCCCchhhhhhhhhhhhhccc-cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQPWVSYEKNRRVSETTATNF-QNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ........       ....... ..+....+.+.+ +++++||++++....
T Consensus       196 ~e~~~~~~-------~~~~d~~d~~~~rs~~~~~~-l~~~aGf~ii~~~~q  238 (254)
T d1xtpa_         196 KENCSTGD-------RFLVDKEDSSLTRSDIHYKR-LFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EEEBC--C-------CEEEETTTTEEEBCHHHHHH-HHHHHTCCEEEEEEC
T ss_pred             EecCCCCC-------cceecccCCceeCCHHHHHH-HHHHcCCEEEEEEee
Confidence            64321110       0011111 122233445544 899999999987666

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.71  E-value=7.9e-17  Score=142.84  Aligned_cols=154  Identities=18%  Similarity=0.196  Sum_probs=111.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.++.++..                                
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------  125 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD--------------------------------  125 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH--------------------------------
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH--------------------------------
Confidence            3557999999999999999999999899999998 6789999887765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++..++.+...|+.+.   ...+||+|++.+++|+    |+++....+|+++.++|+|||.++
T Consensus       126 ----------------~~~~~rv~~~~~D~~~~---~~~~~D~v~~~~vlh~----~~d~~~~~~L~~~~~~LkPGG~l~  182 (253)
T d1tw3a2         126 ----------------EGLSDRVDVVEGDFFEP---LPRKADAIILSFVLLN----WPDHDAVRILTRCAEALEPGGRIL  182 (253)
T ss_dssp             ----------------TTCTTTEEEEECCTTSC---CSSCEEEEEEESCGGG----SCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------hhcccchhhccccchhh---cccchhheeecccccc----CCchhhHHHHHHHHHhcCCCcEEE
Confidence                            45566799999998763   2357999999999864    456777899999999999999999


Q ss_pred             EeeCCCchhhhhh----hhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNR----RVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +............    .....+.........+.+++.+ +++++||+++++..-
T Consensus       183 i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~-ll~~AGf~~~~v~~~  236 (253)
T d1tw3a2         183 IHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDG-LAASAGLVVEEVRQL  236 (253)
T ss_dssp             EEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHH-HHHHTTEEEEEEEEE
T ss_pred             EEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHH-HHHHCCCeEEEEEEC
Confidence            8543221111100    0000111111222235566666 899999999887653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.71  E-value=6.7e-17  Score=142.76  Aligned_cols=118  Identities=21%  Similarity=0.258  Sum_probs=94.2

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.....++.+|||||||+|..+..+++. +..+|+|+|+|+.+++.|+.....                           
T Consensus        18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~---------------------------   69 (252)
T d1ri5a_          18 IRLYTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARN---------------------------   69 (252)
T ss_dssp             HHHHCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHT---------------------------
T ss_pred             HHHhCCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHh---------------------------
Confidence            3445578899999999999998888776 345899999999999999886543                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                           .+....+.|.+.|.........++||+|+|..++||+.  ...+++..++.++.++|+|
T Consensus        70 ---------------------~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~i~~~Lk~  126 (252)
T d1ri5a_          70 ---------------------MKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAF--STSESLDIAQRNIARHLRP  126 (252)
T ss_dssp             ---------------------SCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGG--SSHHHHHHHHHHHHHTEEE
T ss_pred             ---------------------cCCCcceEEEEcchhhhcccccccceEEEEcceeeecC--CCHHHHHHHHHHHhceeCC
Confidence                                 33344688999998664333567899999999998763  2346778999999999999


Q ss_pred             CcEEEEeeC
Q 047406          216 GGIFVLEPQ  224 (290)
Q Consensus       216 gG~l~i~~~  224 (290)
                      ||++++..+
T Consensus       127 gG~~i~~~~  135 (252)
T d1ri5a_         127 GGYFIMTVP  135 (252)
T ss_dssp             EEEEEEEEE
T ss_pred             CCEEEEEec
Confidence            999998654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.7e-16  Score=143.84  Aligned_cols=154  Identities=18%  Similarity=0.260  Sum_probs=111.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||||||.|.++..+++.+++ +|+|+|+|+++++.|++.+..                               
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~-------------------------------   97 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLAS-------------------------------   97 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHT-------------------------------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHh-------------------------------
Confidence            478999999999999999998888765 999999999999999987765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++...+.+...|..+    .+++||.|+|..++++++    .+....+|+++.++|+|||.+
T Consensus        98 -----------------~~l~~~~~~~~~d~~~----~~~~fD~i~si~~~eh~~----~~~~~~~f~~i~~~LkpgG~~  152 (280)
T d2fk8a1          98 -----------------IDTNRSRQVLLQGWED----FAEPVDRIVSIEAFEHFG----HENYDDFFKRCFNIMPADGRM  152 (280)
T ss_dssp             -----------------SCCSSCEEEEESCGGG----CCCCCSEEEEESCGGGTC----GGGHHHHHHHHHHHSCTTCEE
T ss_pred             -----------------hccccchhhhhhhhhh----hccchhhhhHhhHHHHhh----hhhHHHHHHHHHhccCCCceE
Confidence                             4555667787777755    357899999999996653    467789999999999999999


Q ss_pred             EEeeCCCc-hhhhh----------hhhhhhhhc-cccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          220 VLEPQPWV-SYEKN----------RRVSETTAT-NFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       220 ~i~~~~~~-~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      +++..... .+...          .....++.. -|+.-.+.+......+++++||+++++..
T Consensus       153 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~  215 (280)
T d2fk8a1         153 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS  215 (280)
T ss_dssp             EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred             EEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccceeee
Confidence            99642111 11110          111223332 34443444444344478999999876654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.2e-17  Score=142.81  Aligned_cols=178  Identities=17%  Similarity=0.147  Sum_probs=104.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||||||+|.++..++... ..+|+|+|+|+.+++.|++++..         ....+.+.+..+..+..+.....
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  119 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK---------EPGAYDWTPAVKFACELEGNSGR  119 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT---------CTTCCCCHHHHHHHHHHTTCGGG
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh---------ccccchhhhHHHHHHHhccccch
Confidence            467899999999999987776653 44899999999999999998764         11222222222222211110000


Q ss_pred             HHHHHHhhhcCCCccccCcCccee-Eeeccccc---CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVS-FKQENFVH---GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~---~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                      ...    .+.       .+...+. ....+...   ..+.+.+.||+|+|.++++|+.  ...++...+++++.++|+||
T Consensus       120 ~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpG  186 (257)
T d2a14a1         120 WEE----KEE-------KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC--CSLDAYRAALCNLASLLKPG  186 (257)
T ss_dssp             HHH----HHH-------HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEE
T ss_pred             HHH----HHH-------HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhc--ccHHHHHHHHHHHHhccCCC
Confidence            000    000       0000011 11111111   1244668899999999998764  34567889999999999999


Q ss_pred             cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      |++++....-..      ........+....+..+++.+ +++++||+++++
T Consensus       187 G~li~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~l~~aGf~v~~~  231 (257)
T d2a14a1         187 GHLVTTVTLRLP------SYMVGKREFSCVALEKGEVEQ-AVLDAGFDIEQL  231 (257)
T ss_dssp             EEEEEEEESSCC------EEEETTEEEECCCCCHHHHHH-HHHHTTEEEEEE
T ss_pred             cEEEEEEecccc------cceeccccccccCCCHHHHHH-HHHHCCCEEEEE
Confidence            999996431100      000111112222345555555 899999998877

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.67  E-value=4.6e-16  Score=138.66  Aligned_cols=154  Identities=18%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ....+|||||||+|.++..+++.+|..+++++|+ |++++.++.++..                                
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~--------------------------------  126 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD--------------------------------  126 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------------------------------
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh--------------------------------
Confidence            3557899999999999999999999999999998 8899999887765                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++.+++.+...|+.+.  .+ ..||+|++.+++|.    |+++....+|+++.+.|+|||.++
T Consensus       127 ----------------~~~~~ri~~~~~d~~~~--~p-~~~D~v~~~~vLh~----~~d~~~~~lL~~i~~~LkpgG~ll  183 (256)
T d1qzza2         127 ----------------AGLADRVTVAEGDFFKP--LP-VTADVVLLSFVLLN----WSDEDALTILRGCVRALEPGGRLL  183 (256)
T ss_dssp             ----------------TTCTTTEEEEECCTTSC--CS-CCEEEEEEESCGGG----SCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------cCCcceeeeeeeecccc--cc-ccchhhhccccccc----cCcHHHHHHHHHHHhhcCCcceeE
Confidence                            44556799999998763  23 46999999999863    567788999999999999999999


Q ss_pred             EeeCCCchhhhhh----h-hhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          221 LEPQPWVSYEKNR----R-VSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       221 i~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |............    . ....+.........+.+++.+ +++++||++++....
T Consensus       184 I~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~-ll~~AGf~~~~~~~~  238 (256)
T d1qzza2         184 VLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVD-LAGSAGLALASERTS  238 (256)
T ss_dssp             EEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHH-HHHTTTEEEEEEEEE
T ss_pred             EEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHH-HHHHCCCceeEEEEe
Confidence            8543211111111    0 111111122233345566766 899999999988765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=2e-16  Score=142.59  Aligned_cols=110  Identities=16%  Similarity=0.261  Sum_probs=91.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+|||+|.++..++...+. ..|+|+|+|+.+++.|+++...                              
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~------------------------------   74 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL------------------------------   74 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS------------------------------
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc------------------------------
Confidence            356789999999999999999987763 5899999999999999987653                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+  .++.|.+.|+.+ .+. .++||+|+|..+++|+      ++...+++++.++|+|||.
T Consensus        75 ------------------~~--~~~~f~~~d~~~-~~~-~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~  126 (281)
T d2gh1a1          75 ------------------LP--YDSEFLEGDATE-IEL-NDKYDIAICHAFLLHM------TTPETMLQKMIHSVKKGGK  126 (281)
T ss_dssp             ------------------SS--SEEEEEESCTTT-CCC-SSCEEEEEEESCGGGC------SSHHHHHHHHHHTEEEEEE
T ss_pred             ------------------cc--cccccccccccc-ccc-cCCceEEEEehhhhcC------CCHHHHHHHHHHHcCcCcE
Confidence                              12  258899999866 344 4679999999999876      3577899999999999999


Q ss_pred             EEEeeCCCc
Q 047406          219 FVLEPQPWV  227 (290)
Q Consensus       219 l~i~~~~~~  227 (290)
                      +++..+.|.
T Consensus       127 lii~~~~~~  135 (281)
T d2gh1a1         127 IICFEPHWI  135 (281)
T ss_dssp             EEEEECCHH
T ss_pred             EEEEECCcc
Confidence            999877653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=1.3e-15  Score=138.91  Aligned_cols=159  Identities=15%  Similarity=0.169  Sum_probs=113.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||||||.|..+..+|+.+++ +|+|+++|+.+++.|+..+..                               
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~-------------------------------  106 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDE-------------------------------  106 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHh-------------------------------
Confidence            478999999999999999999998876 899999999999999988765                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC---CchHHHHHHHHHHhhcCCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW---GDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~---~~~~~~~~l~~~~~~Lkpg  216 (290)
                                       .++...+.+...|+..    ++++||.|+|..++.|+.-..   +.+....+|+++.++|+||
T Consensus       107 -----------------~~l~~~v~~~~~d~~~----~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg  165 (291)
T d1kpia_         107 -----------------VDSPRRKEVRIQGWEE----FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  165 (291)
T ss_dssp             -----------------SCCSSCEEEEECCGGG----CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred             -----------------hccchhhhhhhhcccc----cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence                             5566678888888643    468899999999996553100   1145689999999999999


Q ss_pred             cEEEEeeCCCch--hhh---------hhhhhhhhhc-cccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          217 GIFVLEPQPWVS--YEK---------NRRVSETTAT-NFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       217 G~l~i~~~~~~~--~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |.++++.-....  +..         ......++.. -|+.-.+.+......+++++||++++....
T Consensus       166 G~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~  232 (291)
T d1kpia_         166 GRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI  232 (291)
T ss_dssp             CEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence            999995422111  100         0111122222 344444444444444789999998876544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=142.76  Aligned_cols=179  Identities=13%  Similarity=0.078  Sum_probs=107.3

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh-
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV-  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  138 (290)
                      ...|.++||+|||+|.++...+... ..+|+|+|+|+.+++.+++++..         +...+.|.++....+.++... 
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~---------~~~~~d~~~~~~~~~~~~~~~~  121 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQE---------EPGAFNWSMYSQHACLIEGKGE  121 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTT---------CTTCCCCHHHHHHHHHHHCSCC
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhc---------Ccccccchhhhhhhhhhccccc
Confidence            3567899999999998876656554 34899999999999999987654         222333333333222222000 


Q ss_pred             -hhHHHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          139 -TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                       .++..+ ..+           .........|....     .+.+.+.||+|+|.++++|++-+  .+++..++++++++
T Consensus       122 ~~~~~~~-~~~-----------~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~--~~~~~~~l~~~~~~  187 (263)
T d2g72a1         122 CWQDKER-QLR-----------ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD--LASFQRALDHITTL  187 (263)
T ss_dssp             CHHHHHH-HHH-----------HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS--HHHHHHHHHHHHTT
T ss_pred             hhhhhHH-Hhh-----------hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccC--HHHHHHHHHHHHHH
Confidence             000000 000           00122333444332     22234689999999999988632  35689999999999


Q ss_pred             cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406          213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI  269 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~  269 (290)
                      |||||+|++.......+      .......+....+..+++. .++.++||++++.-
T Consensus       188 LkPGG~li~~~~~~~~~------~~~~~~~~~~~~~t~e~v~-~~l~~aGf~v~~~~  237 (263)
T d2g72a1         188 LRPGGHLLLIGALEESW------YLAGEARLTVVPVSEEEVR-EALVRSGYKVRDLR  237 (263)
T ss_dssp             EEEEEEEEEEEEESCCE------EEETTEEEECCCCCHHHHH-HHHHHTTEEEEEEE
T ss_pred             cCCCCEEEEecccCCcc------cccCCcccccCCCCHHHHH-HHHHHCCCeEEEEE
Confidence            99999999964321110      0111112333334555554 48999999987653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=2.2e-15  Score=136.87  Aligned_cols=155  Identities=15%  Similarity=0.205  Sum_probs=113.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||||||.|..++.+|+.+++ +|+|+++|+..++.|++.+..                               
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~-------------------------------  107 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVAN-------------------------------  107 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHT-------------------------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHh-------------------------------
Confidence            478999999999999999999999875 999999999999999987654                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+.+.+...|+.+    .+++||.|++..++.++.    .+....+++++.++|+|||.+
T Consensus       108 -----------------~g~~~~v~~~~~d~~~----~~~~fD~i~si~~~eh~~----~~~~~~~~~~~~r~LkpgG~~  162 (285)
T d1kpga_         108 -----------------SENLRSKRVLLAGWEQ----FDEPVDRIVSIGAFEHFG----HERYDAFFSLAHRLLPADGVM  162 (285)
T ss_dssp             -----------------CCCCSCEEEEESCGGG----CCCCCSEEEEESCGGGTC----TTTHHHHHHHHHHHSCTTCEE
T ss_pred             -----------------hhhhhhhHHHHhhhhc----ccccccceeeehhhhhcC----chhHHHHHHHHHhhcCCCCcE
Confidence                             5566789999999865    247899999999996653    456789999999999999999


Q ss_pred             EEeeCC----Cchhh-------hhhhhhhhhhc-cccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQP----WVSYE-------KNRRVSETTAT-NFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~----~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++..-.    +....       .......++.. -|++-.+.+......+++++||++++...-
T Consensus       163 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~  226 (285)
T d1kpga_         163 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSL  226 (285)
T ss_dssp             EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             EEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence            984321    00000       01111222322 345444444444444889999998877543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=4.7e-16  Score=139.22  Aligned_cols=134  Identities=23%  Similarity=0.322  Sum_probs=101.6

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD  132 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (290)
                      ++.+.+...+|.+|||+|||+|.+++.+++. + .+|+|+|+|+.+++.|+.++..                        
T Consensus       111 l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g-~~V~gvDis~~av~~A~~na~~------------------------  164 (254)
T d2nxca1         111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G-GKALGVDIDPMVLPQAEANAKR------------------------  164 (254)
T ss_dssp             HHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCGGGHHHHHHHHHH------------------------
T ss_pred             HHHHHhhcCccCEEEEcccchhHHHHHHHhc-C-CEEEEEECChHHHHHHHHHHHH------------------------
Confidence            5567777789999999999999999887664 3 5899999999999999999876                        


Q ss_pred             CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406          133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL  212 (290)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~  212 (290)
                                              +++  .+.+.+.|..+.  .+.++||+|+++...         +.+..++..+.++
T Consensus       165 ------------------------n~~--~~~~~~~d~~~~--~~~~~fD~V~ani~~---------~~l~~l~~~~~~~  207 (254)
T d2nxca1         165 ------------------------NGV--RPRFLEGSLEAA--LPFGPFDLLVANLYA---------ELHAALAPRYREA  207 (254)
T ss_dssp             ------------------------TTC--CCEEEESCHHHH--GGGCCEEEEEEECCH---------HHHHHHHHHHHHH
T ss_pred             ------------------------cCC--ceeEEecccccc--ccccccchhhhcccc---------ccHHHHHHHHHHh
Confidence                                    333  245677776542  345789999997554         4567888999999


Q ss_pred             cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      |+|||+++++.-.                     .-..+.+.+ .++++||++++....
T Consensus       208 LkpGG~lilSgil---------------------~~~~~~v~~-~~~~~Gf~~~~~~~~  244 (254)
T d2nxca1         208 LVPGGRALLTGIL---------------------KDRAPLVRE-AMAGAGFRPLEEAAE  244 (254)
T ss_dssp             EEEEEEEEEEEEE---------------------GGGHHHHHH-HHHHTTCEEEEEEEE
T ss_pred             cCCCcEEEEEecc---------------------hhhHHHHHH-HHHHCCCEEEEEEEE
Confidence            9999999996310                     011233333 788999999988776

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=4.2e-16  Score=134.61  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.+...++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|+++..                            
T Consensus        36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~----------------------------   85 (246)
T d2avna1          36 LEEYLKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----------------------------   85 (246)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----------------------------
T ss_pred             HHHhcCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc----------------------------
Confidence            4445567899999999999999999886  4589999999999999987311                            


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                                 ..+...|+.+ ++.+++.||+|+|. .+++|+      ++...+|.++.++|+
T Consensus        86 ---------------------------~~~~~~~~~~-l~~~~~~fD~ii~~~~~~~~~------~d~~~~l~~i~r~Lk  131 (246)
T d2avna1          86 ---------------------------KNVVEAKAED-LPFPSGAFEAVLALGDVLSYV------ENKDKAFSEIRRVLV  131 (246)
T ss_dssp             ---------------------------SCEEECCTTS-CCSCTTCEEEEEECSSHHHHC------SCHHHHHHHHHHHEE
T ss_pred             ---------------------------cccccccccc-cccccccccceeeecchhhhh------hhHHHHHHHHHhhcC
Confidence                                       1245566655 56777999999986 577765      356789999999999


Q ss_pred             CCcEEEEeeCCCchh
Q 047406          215 PGGIFVLEPQPWVSY  229 (290)
Q Consensus       215 pgG~l~i~~~~~~~~  229 (290)
                      |||++++..++|.+.
T Consensus       132 ~gG~~ii~~~~~~~~  146 (246)
T d2avna1         132 PDGLLIATVDNFYTF  146 (246)
T ss_dssp             EEEEEEEEEEBHHHH
T ss_pred             cCcEEEEEECCHHHH
Confidence            999999987665443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=2e-15  Score=128.38  Aligned_cols=107  Identities=18%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +..+.+|||||||+|..+..++++  ..+|+|+|+|+.+++.++.....                               
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~-------------------------------   74 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAA-------------------------------   74 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhh-------------------------------
Confidence            345569999999999999999987  45899999999999999987654                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++ +.+.+...|+.+. + +++.||+|+|..+++|++    .+....+++++.++|+|||++
T Consensus        75 -----------------~~~-~~~~~~~~d~~~~-~-~~~~fD~I~~~~~~~~~~----~~~~~~~l~~~~~~L~pgG~~  130 (198)
T d2i6ga1          75 -----------------EGL-DNLQTDLVDLNTL-T-FDGEYDFILSTVVMMFLE----AQTIPGLIANMQRCTKPGGYN  130 (198)
T ss_dssp             -----------------TTC-TTEEEEECCTTTC-C-CCCCEEEEEEESCGGGSC----TTHHHHHHHHHHHTEEEEEEE
T ss_pred             -----------------ccc-cchhhhheecccc-c-ccccccEEEEeeeeecCC----HHHHHHHHHHHHHHcCCCcEE
Confidence                             223 2478888888663 2 457899999999997653    467789999999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       131 ~~~~  134 (198)
T d2i6ga1         131 LIVA  134 (198)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9954

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=4.1e-15  Score=134.32  Aligned_cols=159  Identities=21%  Similarity=0.207  Sum_probs=113.2

Q ss_pred             hhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh--hH----Hhhhhc--cCCCcEEEecCCCChhhHHHH
Q 047406           14 EKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR--FK----VLKKEW--FEGKDCLDIGCNSGIITIQIA   81 (290)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~--l~----~l~~~~--~~~~~vLDiGcG~G~~~~~la   81 (290)
                      ++-.....|+.++. .+|+.| +.+||+..|  .++..   ||  .+    .+....  ....+++|+|||+|.+++.++
T Consensus        53 ~~~~~~i~rR~~~~Pl~YI~g-~~~F~~~~f--~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la  129 (271)
T d1nv8a_          53 KRILELVEKRASGYPLHYILG-EKEFMGLSF--LVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVA  129 (271)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHT-EEEETTEEE--ECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHHHHhhCCCChhhhcC-cEEEeeeEE--EEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhh
Confidence            33344444444554 999999 899999888  45444   33  22    222211  234689999999999999987


Q ss_pred             hHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCc
Q 047406           82 QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFD  161 (290)
Q Consensus        82 ~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (290)
                      . ++..+|+++|+|+.+++.|++|+..                                                .++..
T Consensus       130 ~-~~~~~v~a~Dis~~Al~~A~~Na~~------------------------------------------------~~~~~  160 (271)
T d1nv8a_         130 K-FSDAIVFATDVSSKAVEIARKNAER------------------------------------------------HGVSD  160 (271)
T ss_dssp             H-HSSCEEEEEESCHHHHHHHHHHHHH------------------------------------------------TTCTT
T ss_pred             h-cccceeeechhhhhHHHHHHHHHHH------------------------------------------------cCCCc
Confidence            5 6888999999999999999999887                                                44555


Q ss_pred             ceeEeecccccCCCCCCCceeEEEEchh-------hh-------hhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406          162 IVSFKQENFVHGRDSPEKYYDAILCLSV-------TK-------WIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~v-------l~-------~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      .+.+...|+.+..+...+.||+|+|+.-       +.       +..|+.+++++.-+-.-+.++|+|||.++++++
T Consensus       161 ~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         161 RFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             SEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             eeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence            6788888887754434478999999621       11       355566666665444445678999999999987

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.58  E-value=9.8e-16  Score=127.36  Aligned_cols=121  Identities=8%  Similarity=-0.038  Sum_probs=88.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||+|||+|..+..+|++  +.+|+|+|+|+.+++.|++.+......    ....++                 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~----~~~~~~-----------------   74 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHI----TSQGDF-----------------   74 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEE----EEETTE-----------------
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccch----hhhhhh-----------------
Confidence            368899999999999999999987  569999999999999998865431000    000000                 


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      ...-...+.+.+.|+.+..+.....||+|+|..+++++.    .+.....++++.++|+|||.+
T Consensus        75 ----------------~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~----~~~~~~~~~~i~~~LkpgG~l  134 (201)
T d1pjza_          75 ----------------KVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSG  134 (201)
T ss_dssp             ----------------EEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEE
T ss_pred             ----------------hhccccccceecccccccccccccceeEEEEEeeeEecc----hhhhHHHHHHHHHhcCCCcEE
Confidence                            000123467888888764333456899999999997653    456789999999999999998


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++..
T Consensus       135 ~l~~  138 (201)
T d1pjza_         135 LLIT  138 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=6.7e-15  Score=129.66  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=98.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||+|||+|..+..+|...+...|+|+|+|+.+++.++..+..                               
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-------------------------------  120 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-------------------------------  120 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-------------------------------
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-------------------------------
Confidence            3689999999999999999999987777999999999999999875332                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                          ..++.+...|...........+|++++...+++.      ++...++.++.+.|+|||++
T Consensus       121 --------------------~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~------~~~~~~l~~~~r~LKpgG~~  174 (230)
T d1g8sa_         121 --------------------RENIIPILGDANKPQEYANIVEKVDVIYEDVAQP------NQAEILIKNAKWFLKKGGYG  174 (230)
T ss_dssp             --------------------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST------THHHHHHHHHHHHEEEEEEE
T ss_pred             --------------------hcccceEEEeeccCcccccccceeEEeeccccch------HHHHHHHHHHHHhcccCceE
Confidence                                1245566666655333344567776666555432      57788999999999999999


Q ss_pred             EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ++....+..     +.....       ...-++..+ .|+++||++++.+.-
T Consensus       175 ~i~~k~~~~-----d~~~~~-------~~~~~e~~~-~L~~aGF~ive~idL  213 (230)
T d1g8sa_         175 MIAIKARSI-----DVTKDP-------KEIFKEQKE-ILEAGGFKIVDEVDI  213 (230)
T ss_dssp             EEEEEGGGT-----CSSSCH-------HHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred             EEEeecccc-----CCCCCH-------HHHHHHHHH-HHHHcCCEEEEEecC
Confidence            996421110     000000       001123333 788999999988765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.57  E-value=1.1e-14  Score=123.85  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=87.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.+++.++...  .+|+++|+|+.+++.|+.++..                                
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~--------------------------------   96 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKL--------------------------------   96 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHH--------------------------------
Confidence            578999999999999999988763  4899999999999999998875                                


Q ss_pred             HHHHHHhhhcCCCccccCcC-cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                      .++. ..+.+...|+.+.  .+++.||+|+|..+.++     +.+....++.++.++|+|||++
T Consensus        97 ----------------~~l~~~~i~~~~~d~~~~--~~~~~fD~Ii~~~p~~~-----~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_          97 ----------------NNLDNYDIRVVHSDLYEN--VKDRKYNKIITNPPIRA-----GKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             ----------------TTCTTSCEEEEECSTTTT--CTTSCEEEEEECCCSTT-----CHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------hCCccceEEEEEcchhhh--hccCCceEEEEcccEEe-----cchhhhhHHHHHHHhcCcCcEE
Confidence                            2332 3588999998763  34679999999877642     2355678999999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       154 ~i~~~  158 (194)
T d1dusa_         154 WVVIQ  158 (194)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=2.2e-14  Score=121.29  Aligned_cols=105  Identities=19%  Similarity=0.290  Sum_probs=87.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|+++++.                               
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~-------------------------------   77 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQR-------------------------------   77 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHH-------------------------------
Confidence            367899999999999999999876  44899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++.+++++.++|+.+. ......||+|+|....         .....++..+.+.|+|||.+
T Consensus        78 -----------------~gl~~~v~~~~gda~~~-~~~~~~~D~v~~~~~~---------~~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          78 -----------------HGLGDNVTLMEGDAPEA-LCKIPDIDIAVVGGSG---------GELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             -----------------TTCCTTEEEEESCHHHH-HTTSCCEEEEEESCCT---------TCHHHHHHHHHHTEEEEEEE
T ss_pred             -----------------cCCCcceEEEECchhhc-ccccCCcCEEEEeCcc---------ccchHHHHHHHHHhCcCCEE
Confidence                             55666799999998763 3445789999987654         34568899999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++...
T Consensus       131 vi~~~  135 (186)
T d1l3ia_         131 IVTAI  135 (186)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            98643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=1e-14  Score=124.91  Aligned_cols=141  Identities=16%  Similarity=0.214  Sum_probs=90.8

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc----C----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF----N----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~----~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      +..|||++|||+|.-+..||...    .    ..+|+|+|+|+.+++.|+...+.........   +....-+|.+.+.+
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~---~~~~~~yf~~~~~~  100 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLS---PQQLQRYFMRGTGP  100 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSC---HHHHHHHEEECCTT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhh---HHHHhhceeecCCC
Confidence            44699999999997555544322    1    2379999999999999998665421111111   11111122222221


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L  213 (290)
                      -... .              .....+...+.+...|.....+.+.++||+|+|.+|+.|+    +++...++++++++.|
T Consensus       101 ~~~~-~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf----~~~~~~~vl~~l~~~L  161 (193)
T d1af7a2         101 HEGL-V--------------RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF----DKTTQEDILRRFVPLL  161 (193)
T ss_dssp             SCSE-E--------------EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS----CHHHHHHHHHHHGGGE
T ss_pred             ccce-e--------------ehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc----CHHHHHHHHHHHHHHh
Confidence            1100 0              0011233457888888877555566899999999999654    4678899999999999


Q ss_pred             CCCcEEEEeeC
Q 047406          214 RPGGIFVLEPQ  224 (290)
Q Consensus       214 kpgG~l~i~~~  224 (290)
                      +|||+|++.+.
T Consensus       162 ~pGG~L~lG~s  172 (193)
T d1af7a2         162 KPDGLLFAGHS  172 (193)
T ss_dssp             EEEEEEEECTT
T ss_pred             CCCcEEEEecC
Confidence            99999999643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.6e-14  Score=125.64  Aligned_cols=153  Identities=14%  Similarity=0.125  Sum_probs=97.3

Q ss_pred             CCCcEEEecCCCChhhHHHHhHc----CC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKF----NC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~----~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +..+|||||||+|.++..++...    +.  ..++|+|+|+.+++.|++.+...                          
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~--------------------------   93 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI--------------------------   93 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC--------------------------
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc--------------------------
Confidence            34589999999999888776542    32  36899999999999999876430                          


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcC-cceeEeeccccc-----CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVH-----GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI  209 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~-----~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~  209 (290)
                                           ..+. -.+.+.+.++.+     ..+.+.++||+|+|..+++|+      +++..+++++
T Consensus        94 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~------~d~~~~l~~l  146 (280)
T d1jqea_          94 ---------------------SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV------KDIPATLKFF  146 (280)
T ss_dssp             ---------------------CSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC------SCHHHHHHHH
T ss_pred             ---------------------cccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecC------CCHHHHHHHH
Confidence                                 1111 123344443321     123456899999999999887      4678999999


Q ss_pred             HhhcCCCcEEEEeeCCCchhhhh--hhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          210 WKLLRPGGIFVLEPQPWVSYEKN--RRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       210 ~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      .++|+|||++++......+....  .............-.+....+.. +|++.||..+..
T Consensus       147 ~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~~G~~~~~~  206 (280)
T d1jqea_         147 HSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQ-MLDNLGLKYECY  206 (280)
T ss_dssp             HHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHH-HHHHHTCCEEEE
T ss_pred             HhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHH-HHHHCCCceEEE
Confidence            99999999999865433222111  11111111111111234445544 899999986544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-14  Score=126.35  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|.+|||||||+|..+..+++.. ..+++|+|+|+.+++.|+++...                                
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~--------------------------------   98 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPR--------------------------------   98 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGG--------------------------------
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhh--------------------------------
Confidence            578999999999999999998764 35899999999999999886432                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEE-----chhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILC-----LSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~-----~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                        ....+.+...++... .+.+.++||.|+.     ...++  |    ..+...+++++.++|+
T Consensus        99 ------------------~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~--~----~~~~~~~~~~~~r~Lk  154 (229)
T d1zx0a1          99 ------------------QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETW--H----THQFNFIKNHAFRLLK  154 (229)
T ss_dssp             ------------------CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGT--T----THHHHHHHHTHHHHEE
T ss_pred             ------------------cccccccccccccccccccccccccceeecccccccccc--c----ccCHHHHHHHHHHHcC
Confidence                              112345555554331 2345688999985     33332  2    2567889999999999


Q ss_pred             CCcEEEEe
Q 047406          215 PGGIFVLE  222 (290)
Q Consensus       215 pgG~l~i~  222 (290)
                      |||+|++.
T Consensus       155 pGG~~~~~  162 (229)
T d1zx0a1         155 PGGVLTYC  162 (229)
T ss_dssp             EEEEEEEC
T ss_pred             CCcEEEEE
Confidence            99999884

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.7e-14  Score=126.70  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||||||+|.++..+++.++...++|+|+|+.+++.|++..                                  
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----------------------------------  128 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------------------------------  128 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------------------------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----------------------------------
Confidence            4678999999999999999999888889999999999999887631                                  


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                          .++.+.+.|..+ ++.+++.||+|+|..+.++             +.++.++|||||+++
T Consensus       129 --------------------~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~~-------------~~e~~rvLkpgG~l~  174 (268)
T d1p91a_         129 --------------------PQVTFCVASSHR-LPFSDTSMDAIIRIYAPCK-------------AEELARVVKPGGWVI  174 (268)
T ss_dssp             --------------------TTSEEEECCTTS-CSBCTTCEEEEEEESCCCC-------------HHHHHHHEEEEEEEE
T ss_pred             --------------------ccccceeeehhh-ccCCCCCEEEEeecCCHHH-------------HHHHHHHhCCCcEEE
Confidence                                247888999876 6778899999999877642             357899999999999


Q ss_pred             EeeCC
Q 047406          221 LEPQP  225 (290)
Q Consensus       221 i~~~~  225 (290)
                      +..+.
T Consensus       175 ~~~p~  179 (268)
T d1p91a_         175 TATPG  179 (268)
T ss_dssp             EEEEC
T ss_pred             EEeeC
Confidence            97654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.6e-14  Score=120.60  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=90.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|..+..||+.  +.+|+|+|+|+.+++.|++.......       ......+         ..    
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~-------~~~~~~~---------~~----  101 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYS-------EEPITEI---------PG----  101 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEE-------EEECTTS---------TT----
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhcccc-------ccchhcc---------cc----
Confidence            57889999999999999999986  55999999999999998875432000       0000000         00    


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                  ..........+++.+.|+.+..+...+.||+|+...++++++    .+.....+.++.++|+|||.++
T Consensus       102 ------------~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~----~~~r~~~~~~~~~~LkpgG~~~  165 (229)
T d2bzga1         102 ------------TKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAIN----PGDRKCYADTMFSLLGKKFQYL  165 (229)
T ss_dssp             ------------CEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ------------cceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEecc----chhhHHHHHHHHhhcCCcceEE
Confidence                        000011234689999998875455678999999999986553    4677899999999999999988


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +...
T Consensus       166 l~~~  169 (229)
T d2bzga1         166 LCVL  169 (229)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=7.7e-13  Score=114.52  Aligned_cols=105  Identities=12%  Similarity=0.032  Sum_probs=80.1

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++....                               
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-------------------------------  102 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-------------------------------  102 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-------------------------------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-------------------------------
Confidence            4789999999999999999999988877999999999999999887654                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                          ..++.+...|....  .......+|+|++....        ..+...++.++.+.|+|||
T Consensus       103 --------------------~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~--------~~~~~~~l~~~~~~LkpgG  154 (209)
T d1nt2a_         103 --------------------RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ--------KNQIEILKANAEFFLKEKG  154 (209)
T ss_dssp             --------------------CSSEEEECSCTTCGGGTTTTCCCEEEEEECCCS--------TTHHHHHHHHHHHHEEEEE
T ss_pred             --------------------cCCceEEEeeccCccccccccceEEEEEecccC--------hhhHHHHHHHHHHHhccCC
Confidence                                12577777776552  11122446666543111        1456788999999999999


Q ss_pred             EEEEee
Q 047406          218 IFVLEP  223 (290)
Q Consensus       218 ~l~i~~  223 (290)
                      ++++..
T Consensus       155 ~l~i~~  160 (209)
T d1nt2a_         155 EVVIMV  160 (209)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999853

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=4.1e-13  Score=119.68  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||+|||+|.++..+|+.. +..+|+++|+++++++.|++++..                              
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~------------------------------  132 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------------------------------  132 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------------------------------
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            4799999999999999999999865 456999999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .....++.+...|+.+.  .++..||+|++..           .+...++..+.+.|+|||+
T Consensus       133 ------------------~~~~~nv~~~~~Di~~~--~~~~~fD~V~ld~-----------p~p~~~l~~~~~~LKpGG~  181 (250)
T d1yb2a1         133 ------------------FYDIGNVRTSRSDIADF--ISDQMYDAVIADI-----------PDPWNHVQKIASMMKPGSV  181 (250)
T ss_dssp             ------------------TSCCTTEEEECSCTTTC--CCSCCEEEEEECC-----------SCGGGSHHHHHHTEEEEEE
T ss_pred             ------------------hcCCCceEEEEeeeecc--cccceeeeeeecC-----------CchHHHHHHHHHhcCCCce
Confidence                              22345789999998764  3567899999632           2334678999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      |++..+
T Consensus       182 lv~~~P  187 (250)
T d1yb2a1         182 ATFYLP  187 (250)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            998655

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=1e-12  Score=117.93  Aligned_cols=108  Identities=14%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+.+|.+|||+|||+|..+..||... |..+|+++|+++++++.|+++++...                           
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~---------------------------  145 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY---------------------------  145 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH---------------------------
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc---------------------------
Confidence            34799999999999999999999875 45699999999999999999987631                           


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         ....+++.+...|+.+ .+.+++.||.|++.       +    ++....+..+.++|||||
T Consensus       146 -------------------~~~~~nv~~~~~d~~~-~~~~~~~fDaV~ld-------l----p~P~~~l~~~~~~LkpGG  194 (264)
T d1i9ga_         146 -------------------GQPPDNWRLVVSDLAD-SELPDGSVDRAVLD-------M----LAPWEVLDAVSRLLVAGG  194 (264)
T ss_dssp             -------------------TSCCTTEEEECSCGGG-CCCCTTCEEEEEEE-------S----SCGGGGHHHHHHHEEEEE
T ss_pred             -------------------cCCCceEEEEeccccc-ccccCCCcceEEEe-------c----CCHHHHHHHHHhccCCCC
Confidence                               2334578899999877 35677899999862       1    344577899999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      .+++..+
T Consensus       195 ~lv~~~P  201 (264)
T d1i9ga_         195 VLMVYVA  201 (264)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9999665

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.2e-13  Score=119.79  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=83.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+|||+|.++..+|+.  +.+|+|+|+|+.+++.|+++......                             
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~-----------------------------  103 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRK-----------------------------  103 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTT-----------------------------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhccc-----------------------------
Confidence            35689999999999999999986  45899999999999999987655110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEch-hhhhhhh-cCCchHHHHHHHHHHhhcCCC
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLS-VTKWIHL-NWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~-vl~~~~l-~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                      ........+...++...  ...+.+.||+|+|.. +++|+.- ....++...+|.++.++|+||
T Consensus       104 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  167 (292)
T d1xvaa_         104 ----------------EPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  167 (292)
T ss_dssp             ----------------SHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred             ----------------ccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence                            00001233444554331  112347899999864 6655421 123457889999999999999


Q ss_pred             cEEEEeeCC
Q 047406          217 GIFVLEPQP  225 (290)
Q Consensus       217 G~l~i~~~~  225 (290)
                      |+|++...+
T Consensus       168 G~li~~~~~  176 (292)
T d1xvaa_         168 GLLVIDHRN  176 (292)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEeecC
Confidence            999996544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=3.6e-12  Score=111.81  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||+|||+|..+..+|...+ ...|+|+|+|+.+++.++..+..                              
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------------------------------  120 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------------------------------  120 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------------------------------
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------------------------------
Confidence            46899999999999999999999764 46899999999999999886432                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeeccccc--CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVH--GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                           ..++.....|...  .++.....+|+|++....        .++...++.++.+.|+||
T Consensus       121 ---------------------~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~--------~~~~~~~l~~~~~~Lkpg  171 (227)
T d1g8aa_         121 ---------------------RRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ--------PTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             ---------------------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS--------TTHHHHHHHHHHHHEEEE
T ss_pred             ---------------------cCCceEEEEECCCcccccccccceEEEEEEccc--------cchHHHHHHHHHHhcccC
Confidence                                 1234455555443  223344678988874221        256778999999999999


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |++++.
T Consensus       172 G~lvi~  177 (227)
T d1g8aa_         172 GYGMIA  177 (227)
T ss_dssp             EEEEEE
T ss_pred             CeEEEE
Confidence            999985

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.38  E-value=1.3e-12  Score=115.71  Aligned_cols=145  Identities=17%  Similarity=0.208  Sum_probs=102.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ...+|||||||+|.+++.+++++|..+++..|+ |..++.                                        
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----------------------------------------  119 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----------------------------------------  119 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----------------------------------------
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----------------------------------------
Confidence            347899999999999999999999999999998 544321                                        


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL  221 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (290)
                                     ....+++.+..+|+.+..  |  ..|++++..++|    +|+++....+|+++.+.|+|||.+++
T Consensus       120 ---------------~~~~~ri~~~~gd~~~~~--p--~~D~~~l~~vLh----~~~de~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         120 ---------------APPLSGIEHVGGDMFASV--P--QGDAMILKAVCH----NWSDEKCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             ---------------CCCCTTEEEEECCTTTCC--C--CEEEEEEESSGG----GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cCCCCCeEEecCCccccc--c--cceEEEEehhhh----hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                           122357999999997642  2  459999999985    57789999999999999999999998


Q ss_pred             eeCC-----Cchhhh-h-hhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          222 EPQP-----WVSYEK-N-RRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       222 ~~~~-----~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ....     ...... . ..+...+.........+.++|.+ +++++||+.++++..
T Consensus       177 ~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~-ll~~AGF~~v~v~~~  232 (244)
T d1fp1d2         177 VEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK-LSKLSGFSKFQVACR  232 (244)
T ss_dssp             EEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH-HHHHTTCSEEEEEEE
T ss_pred             EEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHH-HHHHcCCCceEEEec
Confidence            4421     100100 0 00111111122333345677766 899999999998643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.1e-12  Score=115.89  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=96.8

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      .+.+|.+|||+|||+|.++..+|... +..+|+++|+++++++.|++++..                             
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~-----------------------------  150 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-----------------------------  150 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence            35799999999999999999999876 456999999999999999999876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                         .++.+++.+...|....  .....||.|+..       +    .+...++.++.++|||||
T Consensus       151 -------------------~g~~~~v~~~~~d~~~~--~~~~~~D~V~~d-------~----p~p~~~l~~~~~~LKpGG  198 (266)
T d1o54a_         151 -------------------WGLIERVTIKVRDISEG--FDEKDVDALFLD-------V----PDPWNYIDKCWEALKGGG  198 (266)
T ss_dssp             -------------------TTCGGGEEEECCCGGGC--CSCCSEEEEEEC-------C----SCGGGTHHHHHHHEEEEE
T ss_pred             -------------------hccccCcEEEecccccc--ccccceeeeEec-------C----CCHHHHHHHHHhhcCCCC
Confidence                               33445677777776543  345779998842       1    345678999999999999


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG  270 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~  270 (290)
                      .+++..+   +..+.                  ....+ .+++.||..++.+.
T Consensus       199 ~lv~~~P---~~~Qv------------------~~~~~-~l~~~gF~~i~~~E  229 (266)
T d1o54a_         199 RFATVCP---TTNQV------------------QETLK-KLQELPFIRIEVWE  229 (266)
T ss_dssp             EEEEEES---SHHHH------------------HHHHH-HHHHSSEEEEEEEC
T ss_pred             EEEEEeC---cccHH------------------HHHHH-HHHHCCceeEEEEE
Confidence            9998654   11111                  22333 67889998777654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=2e-12  Score=111.70  Aligned_cols=112  Identities=9%  Similarity=0.089  Sum_probs=88.0

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      +..|||||||+|..+..+|+.+|...++|+|+++.++..|...+..                                  
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~----------------------------------   75 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD----------------------------------   75 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH----------------------------------
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH----------------------------------
Confidence            4579999999999999999999999999999999999999987765                                  


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcEE
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~l  219 (290)
                                    .++ +++.+.++|+.... ..+++.+|.|++.+...|..-......  ...++..+.++|+|||+|
T Consensus        76 --------------~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l  140 (204)
T d2fcaa1          76 --------------SEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSI  140 (204)
T ss_dssp             --------------SCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEE
T ss_pred             --------------Hhc-cCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEE
Confidence                          344 36899999986521 146788999999877755421000000  147899999999999999


Q ss_pred             EEee
Q 047406          220 VLEP  223 (290)
Q Consensus       220 ~i~~  223 (290)
                      ++.+
T Consensus       141 ~i~T  144 (204)
T d2fcaa1         141 HFKT  144 (204)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9964

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.5e-12  Score=113.79  Aligned_cols=115  Identities=27%  Similarity=0.315  Sum_probs=86.3

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      ++.+...+.+|.+|||||||+|..+..+|+..+ ..+|+++|+++++++.|++++....-.                   
T Consensus        67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-------------------  127 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-------------------  127 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-------------------
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-------------------
Confidence            344445668999999999999999999888654 458999999999999999988752100                   


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK  211 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~  211 (290)
                                               .-....+.+...|.... .....+||+|++..+++++.            ..+.+
T Consensus       128 -------------------------~~~~~~~~~~~gD~~~~-~~~~~~fD~I~~~~~~~~ip------------~~l~~  169 (224)
T d1i1na_         128 -------------------------LLSSGRVQLVVGDGRMG-YAEEAPYDAIHVGAAAPVVP------------QALID  169 (224)
T ss_dssp             -------------------------HHHTSSEEEEESCGGGC-CGGGCCEEEEEECSBBSSCC------------HHHHH
T ss_pred             -------------------------cccccceEEEEeecccc-cchhhhhhhhhhhcchhhcC------------HHHHh
Confidence                                     00123577888887764 33457899999988875432            35778


Q ss_pred             hcCCCcEEEEeeC
Q 047406          212 LLRPGGIFVLEPQ  224 (290)
Q Consensus       212 ~LkpgG~l~i~~~  224 (290)
                      .|+|||+|++..+
T Consensus       170 ~LkpGG~LV~pv~  182 (224)
T d1i1na_         170 QLKPGGRLILPVG  182 (224)
T ss_dssp             TEEEEEEEEEEES
T ss_pred             hcCCCcEEEEEEc
Confidence            9999999999543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=1.8e-12  Score=112.22  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||||||+|..+..+|+..+ ...|+++|+++.+++.|+.++..                              
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~------------------------------  122 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER------------------------------  122 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh------------------------------
Confidence            57899999999999999999998765 45899999999999999998765                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .++ .++.+...|..+. ....++||+|+|..+++++.            ..+.+.|+|||+
T Consensus       123 ------------------~~~-~n~~~~~~d~~~~-~~~~~~fD~I~~~~~~~~~p------------~~l~~~LkpGG~  170 (213)
T d1dl5a1         123 ------------------LGI-ENVIFVCGDGYYG-VPEFSPYDVIFVTVGVDEVP------------ETWFTQLKEGGR  170 (213)
T ss_dssp             ------------------TTC-CSEEEEESCGGGC-CGGGCCEEEEEECSBBSCCC------------HHHHHHEEEEEE
T ss_pred             ------------------hcc-cccccccCchHHc-cccccchhhhhhhccHHHhH------------HHHHHhcCCCcE
Confidence                              222 3577778887664 33457899999988875431            346778999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      |++...
T Consensus       171 lv~pv~  176 (213)
T d1dl5a1         171 VIVPIN  176 (213)
T ss_dssp             EEEEBC
T ss_pred             EEEEEC
Confidence            998543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.31  E-value=6.5e-12  Score=111.09  Aligned_cols=145  Identities=12%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ...+|+|||||+|..++.+++++|..+++..|+ |..++.                                        
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----------------------------------------  118 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN----------------------------------------  118 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----------------------------------------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh----------------------------------------
Confidence            347899999999999999999999999999998 544322                                        


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC---cE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG---GI  218 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg---G~  218 (290)
                                     .+..+++++..+|+.+.  .  ..+|++++.+++|    +|+++...++|+++.+.|+||   |.
T Consensus       119 ---------------~~~~~rv~~~~gD~f~~--~--p~aD~~~l~~vLH----dw~d~~~~~iL~~~~~al~pgg~~~~  175 (244)
T d1fp2a2         119 ---------------LSGSNNLTYVGGDMFTS--I--PNADAVLLKYILH----NWTDKDCLRILKKCKEAVTNDGKRGK  175 (244)
T ss_dssp             ---------------CCCBTTEEEEECCTTTC--C--CCCSEEEEESCGG----GSCHHHHHHHHHHHHHHHSGGGCCCE
T ss_pred             ---------------CcccCceEEEecCcccC--C--CCCcEEEEEeecc----cCChHHHHHHHHHHHHHcCcccCCcE
Confidence                           12245799999999763  2  3579999999985    578899999999999999998   66


Q ss_pred             EEEeeCCCchh---hhhh--h-hhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          219 FVLEPQPWVSY---EKNR--R-VSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       219 l~i~~~~~~~~---~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      +++........   ....  . .....-........+.++|.+ +++++||+.++++..
T Consensus       176 lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~-ll~~AGf~~~~i~~~  233 (244)
T d1fp2a2         176 VTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKK-LFIEAGFQHYKISPL  233 (244)
T ss_dssp             EEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHH-HHHHTTCCEEEEEEE
T ss_pred             EEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHH-HHHHcCCceEEEEEC
Confidence            66643211000   0000  0 000100112233345567766 899999999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=6.8e-12  Score=114.70  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=84.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..++++|||||||+|.+++.+|+. ++.+|+++|.|+ +++.|++....                               
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~-------------------------------   82 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVEL-------------------------------   82 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHH-------------------------------
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHH-------------------------------
Confidence            468999999999999999887664 556999999987 56777776655                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .++...+.+...|..+ ++.+..+||+|+|..+.+.+.   ....+..++..+.++|+|||++
T Consensus        83 -----------------~~~~~~i~~i~~~~~~-l~~~~~~~D~i~se~~~~~~~---~e~~~~~~~~a~~r~LkpgG~i  141 (328)
T d1g6q1_          83 -----------------NGFSDKITLLRGKLED-VHLPFPKVDIIISEWMGYFLL---YESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             -----------------TTCTTTEEEEESCTTT-SCCSSSCEEEEEECCCBTTBS---TTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------hCccccceEEEeehhh-ccCcccceeEEEEEecceeec---cchhHHHHHHHHHhccCCCeEE
Confidence                             5566679999999876 566778999999966653322   3456778899999999999998


Q ss_pred             EE
Q 047406          220 VL  221 (290)
Q Consensus       220 ~i  221 (290)
                      +=
T Consensus       142 iP  143 (328)
T d1g6q1_         142 FP  143 (328)
T ss_dssp             ES
T ss_pred             Ee
Confidence            63

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=5.6e-12  Score=114.79  Aligned_cols=108  Identities=22%  Similarity=0.302  Sum_probs=84.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.+|++|||||||+|.+++.+|+. ++.+|+|+|.|+. ...+.+.+..                               
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~-------------------------------   77 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKA-------------------------------   77 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHH-------------------------------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHH-------------------------------
Confidence            468999999999999999987774 5568999999975 4566665544                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       +++.+++.+.+.|..+ ++.+..+||+|+|..+.+++   +....+..++..+.++|+|||.+
T Consensus        78 -----------------n~~~~~v~~~~~~~~~-~~~~~~~~D~ivs~~~~~~l---~~e~~~~~~l~~~~r~Lkp~G~i  136 (316)
T d1oria_          78 -----------------NKLDHVVTIIKGKVEE-VELPVEKVDIIISEWMGYCL---FYESMLNTVLHARDKWLAPDGLI  136 (316)
T ss_dssp             -----------------TTCTTTEEEEESCTTT-CCCSSSCEEEEEECCCBBTB---TBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------------hCCccccceEeccHHH-cccccceeEEEeeeeeeeee---ccHHHHHHHHHHHHhcCCCCeEE
Confidence                             5566779999999877 56677899999996555332   23456789999999999999998


Q ss_pred             EE
Q 047406          220 VL  221 (290)
Q Consensus       220 ~i  221 (290)
                      +-
T Consensus       137 iP  138 (316)
T d1oria_         137 FP  138 (316)
T ss_dssp             ES
T ss_pred             Ee
Confidence            74

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-11  Score=110.93  Aligned_cols=109  Identities=22%  Similarity=0.315  Sum_probs=83.6

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ...++++|||||||+|.+++.+|+. ++.+|+++|.|+.++. +...+..                              
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~-a~~~~~~------------------------------   79 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQ-AMDIIRL------------------------------   79 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHH-HHHHHHH------------------------------
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHH-HHHHHHH------------------------------
Confidence            3468899999999999999988775 4468999999998754 4444433                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                        .+..+++.+...|..+ ++.+..+||+|+|....+.+   .....+..++....++|+|||+
T Consensus        80 ------------------~~~~~~i~~~~~~~~~-l~~~~~~~D~Ivse~~~~~~---~~e~~~~~~~~a~~~~Lkp~G~  137 (311)
T d2fyta1          80 ------------------NKLEDTITLIKGKIEE-VHLPVEKVDVIISEWMGYFL---LFESMLDSVLYAKNKYLAKGGS  137 (311)
T ss_dssp             ------------------TTCTTTEEEEESCTTT-SCCSCSCEEEEEECCCBTTB---TTTCHHHHHHHHHHHHEEEEEE
T ss_pred             ------------------hCCCccceEEEeeHHH-hcCccccceEEEEeeeeeec---ccccccHHHHHHHHhcCCCCcE
Confidence                              4556679999999877 56677899999996554322   2345567888888999999999


Q ss_pred             EEE
Q 047406          219 FVL  221 (290)
Q Consensus       219 l~i  221 (290)
                      ++-
T Consensus       138 iip  140 (311)
T d2fyta1         138 VYP  140 (311)
T ss_dssp             EES
T ss_pred             Eec
Confidence            875

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.25  E-value=2.9e-11  Score=104.20  Aligned_cols=114  Identities=11%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      ....|||||||+|..+..+|+.+|...++|+|+++.++..|...+..                                 
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~---------------------------------   77 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE---------------------------------   77 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh---------------------------------
Confidence            34579999999999999999999999999999999999999887765                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCcE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG~  218 (290)
                                     .++ .++.+...|+.... ..+..++|.|++.+.-.|..-.....  -...+++.+.++|+|||.
T Consensus        78 ---------------~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~  141 (204)
T d1yzha1          78 ---------------VGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE  141 (204)
T ss_dssp             ---------------HCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred             ---------------hcc-ccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcE
Confidence                           233 36888888876521 24668899999876654431000000  125889999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      |++.+.
T Consensus       142 l~i~TD  147 (204)
T d1yzha1         142 IHFKTD  147 (204)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            999653

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7e-11  Score=104.64  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      +..++||+|||+|.+++.++.+.+.++++|+|+|+.+++.|+.|+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999887

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.20  E-value=1.1e-11  Score=101.70  Aligned_cols=108  Identities=13%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..|.+|||+|||+|.+++..+.+ ++.+|+++|+++.+++.+++++..                                
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~--------------------------------   59 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIM--------------------------------   59 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHT--------------------------------
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhh--------------------------------
Confidence            57899999999999999987765 556999999999999999999875                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH--hhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW--KLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~--~~LkpgG~  218 (290)
                                      .++...+.+.+.|....+....++||+|++..-.       ........+..+.  ++|+|+|+
T Consensus        60 ----------------~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy-------~~~~~~~~l~~i~~~~~L~~~g~  116 (152)
T d2esra1          60 ----------------TKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY-------AKETIVATIEALAAKNLLSEQVM  116 (152)
T ss_dssp             ----------------TTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS-------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----------------cccccchhhhcccccccccccccccceeEechhh-------ccchHHHHHHHHHHCCCcCCCeE
Confidence                            3445568889988766433456789999974321       1233455556554  46999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++++.
T Consensus       117 iiiE~~  122 (152)
T d2esra1         117 VVCETD  122 (152)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.20  E-value=1.6e-11  Score=107.41  Aligned_cols=99  Identities=21%  Similarity=0.368  Sum_probs=78.3

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      .+.++.+|||||||+|..+..+|+.  ..+|+++|+++..++.|++++..                              
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~------------------------------  114 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY------------------------------  114 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT------------------------------
T ss_pred             hhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc------------------------------
Confidence            3578999999999999999998886  45899999999999999876432                              


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                           ..++.+...|....++ ..++||.|++...+.++            ...+.+.|+|||+
T Consensus       115 ---------------------~~nv~~~~~d~~~g~~-~~~pfD~Iiv~~a~~~i------------p~~l~~qLk~GGr  160 (224)
T d1vbfa_         115 ---------------------YNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL------------LCKPYEQLKEGGI  160 (224)
T ss_dssp             ---------------------CSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC------------CHHHHHTEEEEEE
T ss_pred             ---------------------ccccccccCchhhcch-hhhhHHHHHhhcchhhh------------hHHHHHhcCCCCE
Confidence                                 2368889999876433 35789999998776433            2346788999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      |++-.
T Consensus       161 LV~pv  165 (224)
T d1vbfa_         161 MILPI  165 (224)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99843

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.20  E-value=1.9e-11  Score=107.65  Aligned_cols=144  Identities=17%  Similarity=0.251  Sum_probs=99.0

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ  142 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (290)
                      ..+|+|||||+|..++.+++++|..++++.|+.+ .++.                                         
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-----------------------------------------  119 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIED-----------------------------------------  119 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTT-----------------------------------------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhh-----------------------------------------
Confidence            4689999999999999999999999999999943 2211                                         


Q ss_pred             HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406          143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (290)
                                    .....++.+...|+.+..  |  ..|+++...++|    +|+++....+|+++.+.|+|||.+++.
T Consensus       120 --------------~~~~~r~~~~~~d~~~~~--P--~ad~~~l~~vlh----~~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         120 --------------APSYPGVEHVGGDMFVSI--P--KADAVFMKWICH----DWSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             --------------CCCCTTEEEEECCTTTCC--C--CCSCEECSSSST----TSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             --------------cccCCceEEecccccccC--C--CcceEEEEEEee----cCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence                          122356999999997743  3  247777777764    678899999999999999999998885


Q ss_pred             eCCC-----chhhhh--hhhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406          223 PQPW-----VSYEKN--RRVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS  271 (290)
Q Consensus       223 ~~~~-----~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~  271 (290)
                      ....     ......  ......+. ........+.++|.+ +++++||+.++++..
T Consensus       178 d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~-ll~~AGf~~vkv~~~  233 (243)
T d1kyza2         178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFED-LAKGAGFQGFKVHCN  233 (243)
T ss_dssp             ECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH-HHHHHCCSCEEEEEE
T ss_pred             EEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHH-HHHHcCCCcEEEEEe
Confidence            3211     000000  01111111 112233345567766 899999999998643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.1e-11  Score=110.22  Aligned_cols=116  Identities=13%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.+|.+|||+|||+|.++..||...+ ..+|+++|+++++++.|+++++.+......                       
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~-----------------------  152 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL-----------------------  152 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhh-----------------------
Confidence            57999999999999999999998764 558999999999999999998874321000                       


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                     ....+..+++.+...|+.+.. ..+...||.|+.- +          .+...++.++.++|||||
T Consensus       153 ---------------~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-~----------p~P~~~l~~~~~~LKpGG  206 (324)
T d2b25a1         153 ---------------SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD-M----------LNPHVTLPVFYPHLKHGG  206 (324)
T ss_dssp             ---------------TCSSCCCCCEEEEESCTTCCC-------EEEEEEC-S----------SSTTTTHHHHGGGEEEEE
T ss_pred             ---------------hhhhccccceeEEecchhhcccccCCCCcceEeec-C----------cCHHHHHHHHHHhccCCC
Confidence                           001234567889999886532 2245689999851 1          233457889999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      +|++-.+
T Consensus       207 ~lv~~~P  213 (324)
T d2b25a1         207 VCAVYVV  213 (324)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9998655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=5e-11  Score=109.19  Aligned_cols=121  Identities=18%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      ..+.....+|.+|||++||+|.+++.+|.. +..+|+++|+|+.+++.|+.|+..                         
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~-------------------------  190 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKL-------------------------  190 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH-------------------------
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHH-------------------------
Confidence            345555678999999999999999998775 455899999999999999999887                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhh---hhhcCCchHHHHHHH
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKW---IHLNWGDDGLITLFM  207 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~---~~l~~~~~~~~~~l~  207 (290)
                                             +++..++.+.+.|..+.   ......+||+|++..-..-   -...-...+..+++.
T Consensus       191 -----------------------ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~  247 (324)
T d2as0a2         191 -----------------------NGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNF  247 (324)
T ss_dssp             -----------------------TTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHH
T ss_pred             -----------------------cCCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHH
Confidence                                   55656788999987652   1224578999998432100   000000124467889


Q ss_pred             HHHhhcCCCcEEEEee
Q 047406          208 RIWKLLRPGGIFVLEP  223 (290)
Q Consensus       208 ~~~~~LkpgG~l~i~~  223 (290)
                      .+.++|+|||+|++..
T Consensus       248 ~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         248 AGLNLVKDGGILVTCS  263 (324)
T ss_dssp             HHHTTEEEEEEEEEEE
T ss_pred             HHHHHcCCCcEEEEEe
Confidence            9999999999999953

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=1.4e-10  Score=103.38  Aligned_cols=105  Identities=15%  Similarity=0.080  Sum_probs=83.8

Q ss_pred             hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      +.....+|.+|||+|||+|.+++.+|+. +..+|+++|+||.+++.++.|+..                           
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~---------------------------  152 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHL---------------------------  152 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHH---------------------------
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHH---------------------------
Confidence            3445578999999999999999998886 445899999999999999999887                           


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp  215 (290)
                                           +++.+.+.+.++|..+.  .+.+.||.|++...-          ....++..+.++|+|
T Consensus       153 ---------------------n~l~~~v~~~~~D~~~~--~~~~~~D~Ii~~~p~----------~~~~~l~~a~~~l~~  199 (260)
T d2frna1         153 ---------------------NKVEDRMSAYNMDNRDF--PGENIADRILMGYVV----------RTHEFIPKALSIAKD  199 (260)
T ss_dssp             ---------------------TTCTTTEEEECSCTTTC--CCCSCEEEEEECCCS----------SGGGGHHHHHHHEEE
T ss_pred             ---------------------hCCCceEEEEEcchHHh--ccCCCCCEEEECCCC----------chHHHHHHHHhhcCC
Confidence                                 56667799999998763  235789999874221          123456778899999


Q ss_pred             CcEEEE
Q 047406          216 GGIFVL  221 (290)
Q Consensus       216 gG~l~i  221 (290)
                      ||++.+
T Consensus       200 gG~lh~  205 (260)
T d2frna1         200 GAIIHY  205 (260)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            999876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.3e-11  Score=110.55  Aligned_cols=115  Identities=14%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|.++..+|+.+++.+++|+|+|+.+++.|+.........       ..       ..         
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~-------~~-------~~---------  205 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW-------MK-------WY---------  205 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHH-------HH-------HH---------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH-------hh-------hc---------
Confidence            46789999999999999999999888888999999999999999877652100       00       00         


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC--ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK--YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                       ..-...+.|.++|+.+. +..+.  ..|+|++.+..+       .+++...+.++.+.|||||
T Consensus       206 -----------------g~~~~~i~~~~gd~~~~-~~~~~~~~advi~~~~~~f-------~~~~~~~l~e~~r~LKpGg  260 (328)
T d1nw3a_         206 -----------------GKKHAEYTLERGDFLSE-EWRERIANTSVIFVNNFAF-------GPEVDHQLKERFANMKEGG  260 (328)
T ss_dssp             -----------------TCCCCCEEEEECCTTSH-HHHHHHHHCSEEEECCTTT-------CHHHHHHHHHHHTTCCTTC
T ss_pred             -----------------cccCCceEEEECccccc-ccccccCcceEEEEcceec-------chHHHHHHHHHHHhCCCCc
Confidence                             00123589999998762 22222  257888766542       2577889999999999999


Q ss_pred             EEEEe
Q 047406          218 IFVLE  222 (290)
Q Consensus       218 ~l~i~  222 (290)
                      .+++.
T Consensus       261 ~iv~~  265 (328)
T d1nw3a_         261 RIVSS  265 (328)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            99884

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.3e-10  Score=109.89  Aligned_cols=116  Identities=19%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.++||||||+|..+..+|..+++.+++|+|+|+.+++.|+.+.........       .       .|        
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~-------~-------~g--------  271 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK-------L-------YG--------  271 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH-------H-------TT--------
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhh-------h-------hc--------
Confidence            5789999999999999999999999988999999999999999998765321000       0       00        


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeE-eecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSF-KQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                       ... ....+ ...++...  ....-..+|+|++.+.++       .+++...|.++.+.||||
T Consensus       272 -----------------~~~-~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f-------~~~l~~~L~ei~r~LKPG  326 (406)
T d1u2za_         272 -----------------MRL-NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-------DEDLNKKVEKILQTAKVG  326 (406)
T ss_dssp             -----------------BCC-CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-------CHHHHHHHHHHHTTCCTT
T ss_pred             -----------------ccc-ccceeeeeechhhccccccccccceEEEEecccC-------chHHHHHHHHHHHhcCCC
Confidence                             000 01111 22233221  000124578888865441       367889999999999999


Q ss_pred             cEEEEe
Q 047406          217 GIFVLE  222 (290)
Q Consensus       217 G~l~i~  222 (290)
                      |.++..
T Consensus       327 GrIVs~  332 (406)
T d1u2za_         327 CKIISL  332 (406)
T ss_dssp             CEEEES
T ss_pred             cEEEEe
Confidence            999884

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=1.4e-10  Score=106.08  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+|.+|||++||+|.+++.+|..  ..+|+++|+|+.+++.|+.++..                               
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~-------------------------------  189 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARL-------------------------------  189 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHH-------------------------------
Confidence            357899999999999999988753  56999999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhh---hhhcCCchHHHHHHHHHHhhc
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKW---IHLNWGDDGLITLFMRIWKLL  213 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~---~~l~~~~~~~~~~l~~~~~~L  213 (290)
                                       +++ +++.+.+.|..+.   ......+||+|++..-..-   -.+.-.......++..+.++|
T Consensus       190 -----------------ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lL  251 (318)
T d1wxxa2         190 -----------------NGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLL  251 (318)
T ss_dssp             -----------------TTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             -----------------cCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHc
Confidence                             444 3588888887552   2224578999998432100   000000134568899999999


Q ss_pred             CCCcEEEEee
Q 047406          214 RPGGIFVLEP  223 (290)
Q Consensus       214 kpgG~l~i~~  223 (290)
                      +|||+|++..
T Consensus       252 kpGG~Lv~~s  261 (318)
T d1wxxa2         252 KEGGILATAS  261 (318)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999999953

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=1.4e-10  Score=101.08  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             HhhhhccCCCcEEEecCCCChhhHHHHhHcC------CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFN------CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      .+...+.++.+|||||||+|..+..+++..+      ..+|+++|++++.++.|++++......                
T Consensus        73 ~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~----------------  136 (223)
T d1r18a_          73 YLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS----------------  136 (223)
T ss_dssp             HTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh----------------
Confidence            3334567899999999999999998887643      237999999999999999987652110                


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR  208 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~  208 (290)
                                                 ..+ ..++.+...|..+.++ +.++||.|++...+..++            ..
T Consensus       137 ---------------------------~~~-~~nv~~~~~d~~~~~~-~~~~fD~Iiv~~a~~~~p------------~~  175 (223)
T d1r18a_         137 ---------------------------MLD-SGQLLIVEGDGRKGYP-PNAPYNAIHVGAAAPDTP------------TE  175 (223)
T ss_dssp             ---------------------------HHH-HTSEEEEESCGGGCCG-GGCSEEEEEECSCBSSCC------------HH
T ss_pred             ---------------------------hcC-ccEEEEEecccccccc-cccceeeEEEEeechhch------------HH
Confidence                                       001 2358899999877533 357899999987763221            34


Q ss_pred             HHhhcCCCcEEEEeeC
Q 047406          209 IWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       209 ~~~~LkpgG~l~i~~~  224 (290)
                      +.+.|+|||++++..+
T Consensus       176 l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         176 LINQLASGGRLIVPVG  191 (223)
T ss_dssp             HHHTEEEEEEEEEEES
T ss_pred             HHHhcCCCcEEEEEEe
Confidence            6789999999998543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=1.7e-10  Score=96.39  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++...+.+|.+|||+|||+|.+++..+.+ + .+++++|+|+.+++.+++++..
T Consensus        33 ~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g-a~vv~vD~~~~a~~~~~~N~~~   85 (171)
T d1ws6a1          33 DYLRLRYPRRGRFLDPFAGSGAVGLEAASE-G-WEAVLVEKDPEAVRLLKENVRR   85 (171)
T ss_dssp             HHHHHHCTTCCEEEEETCSSCHHHHHHHHT-T-CEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHhhccccCCCeEEEeccccchhhhhhhhc-c-chhhhcccCHHHHhhhhHHHHh
Confidence            455566678999999999999999987665 3 4899999999999999999876

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.01  E-value=6.7e-10  Score=96.33  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=81.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      +.++.+|||||||+|..+..+|...+ .+|+++|++++.++.|+.++..                               
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~-------------------------------  123 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLER-------------------------------  123 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHH-------------------------------
Confidence            47899999999999999999887654 4799999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                       .+ ..++.+..+|..+.. ....+||.|++......++            ..+...|+|||++
T Consensus       124 -----------------~g-~~nv~~~~gd~~~g~-~~~~pfD~Iiv~~a~~~ip------------~~l~~qL~~gGrL  172 (215)
T d1jg1a_         124 -----------------AG-VKNVHVILGDGSKGF-PPKAPYDVIIVTAGAPKIP------------EPLIEQLKIGGKL  172 (215)
T ss_dssp             -----------------TT-CCSEEEEESCGGGCC-GGGCCEEEEEECSBBSSCC------------HHHHHTEEEEEEE
T ss_pred             -----------------cC-CceeEEEECccccCC-cccCcceeEEeecccccCC------------HHHHHhcCCCCEE
Confidence                             22 246889999987753 3358899999987764322            2356779999999


Q ss_pred             EEeeCC
Q 047406          220 VLEPQP  225 (290)
Q Consensus       220 ~i~~~~  225 (290)
                      ++-...
T Consensus       173 v~pv~~  178 (215)
T d1jg1a_         173 IIPVGS  178 (215)
T ss_dssp             EEEECS
T ss_pred             EEEEcc
Confidence            985543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.99  E-value=2.1e-09  Score=98.13  Aligned_cols=121  Identities=12%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406           54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG  133 (290)
Q Consensus        54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (290)
                      ..+.+.+.+|.+|||+.||+|.+++.++. .++.+|+++|+|+.+++.++.|+..                         
T Consensus       136 ~~l~~~~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~-------------------------  189 (317)
T d2b78a2         136 NELINGSAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEA-------------------------  189 (317)
T ss_dssp             HHHHHTTTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHH-------------------------
T ss_pred             HHHHHHhhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHH-------------------------
Confidence            34556667899999999999999988655 4566899999999999999999876                         


Q ss_pred             cchhhhhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCC---CCCCceeEEEEchhh---hhhhhcCCchHHHHHH
Q 047406          134 LEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD---SPEKYYDAILCLSVT---KWIHLNWGDDGLITLF  206 (290)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl---~~~~l~~~~~~~~~~l  206 (290)
                                             +++. .++.+.+.|..+.+.   ....+||+|++-.-.   .--.+.-...+..+++
T Consensus       190 -----------------------n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~  246 (317)
T d2b78a2         190 -----------------------NHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLI  246 (317)
T ss_dssp             -----------------------TTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHH
T ss_pred             -----------------------hcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHH
Confidence                                   4442 468899999865321   134689999984221   0000000113456899


Q ss_pred             HHHHhhcCCCcEEEEee
Q 047406          207 MRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~  223 (290)
                      ..+.++|+|||+|++..
T Consensus       247 ~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         247 RQGLEILSENGLIIAST  263 (317)
T ss_dssp             HHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEe
Confidence            99999999999999954

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.6e-09  Score=91.08  Aligned_cols=107  Identities=11%  Similarity=0.070  Sum_probs=81.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||++||+|++++..+.+ ++.+|+.+|.|+.+++.+++|+..                                
T Consensus        42 ~~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~--------------------------------   88 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLAT--------------------------------   88 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHH--------------------------------
T ss_pred             cchhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhh--------------------------------
Confidence            57899999999999999987665 556999999999999999999875                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~LkpgG~  218 (290)
                                      .+. .++.+...|....+......||+|++-.-       |.......++..+.+  +|+|+|+
T Consensus        89 ----------------~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPP-------Y~~~~~~~~l~~l~~~~~L~~~~i  144 (183)
T d2fpoa1          89 ----------------LKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP-------FRRGLLEETINLLEDNGWLADEAL  144 (183)
T ss_dssp             ----------------TTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-------SSTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ----------------ccc-cceeeeeecccccccccccccCEEEEcCc-------cccchHHHHHHHHHHCCCCCCCeE
Confidence                            122 34677777876644445678999997432       333445667777765  5999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++++.
T Consensus       145 IiiE~~  150 (183)
T d2fpoa1         145 IYVESE  150 (183)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.8e-09  Score=93.78  Aligned_cols=110  Identities=17%  Similarity=0.302  Sum_probs=87.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...++|||||||+|.-++.+|...+ ..+|+++|+++...+.|+.++..                               
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~-------------------------------  106 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-------------------------------  106 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-------------------------------
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh-------------------------------
Confidence            5678999999999999999998776 46999999999999999998876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk  214 (290)
                                       .++.+.+.+..+|..+.++     ...++||+|+.         +.+++.....+..+.++|+
T Consensus       107 -----------------ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifi---------D~dk~~y~~~~~~~~~lL~  160 (219)
T d2avda1         107 -----------------AEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVV---------DADKENCSAYYERCLQLLR  160 (219)
T ss_dssp             -----------------TTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEE---------CSCSTTHHHHHHHHHHHEE
T ss_pred             -----------------cCccceEEEEEeehhhcchhhhhhcccCCccEEEE---------eCCHHHHHHHHHHHHHHhc
Confidence                             3455678888888755321     13478999995         3344566788899999999


Q ss_pred             CCcEEEEeeCCCc
Q 047406          215 PGGIFVLEPQPWV  227 (290)
Q Consensus       215 pgG~l~i~~~~~~  227 (290)
                      |||++++..--|.
T Consensus       161 ~GGvii~Dn~l~~  173 (219)
T d2avda1         161 PGGILAVLRVLWR  173 (219)
T ss_dssp             EEEEEEEECCSGG
T ss_pred             CCcEEEEeCCccc
Confidence            9999999655443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.91  E-value=1.1e-09  Score=92.21  Aligned_cols=109  Identities=13%  Similarity=0.201  Sum_probs=82.2

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ...|.+|||++||+|.+++..+.+ ++.+|+++|.|+.+++.+++++..                               
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~-------------------------------   86 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAI-------------------------------   86 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH-------------------------------
T ss_pred             hcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhh-------------------------------
Confidence            357899999999999999987775 556899999999999999999876                               


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCC---CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcC
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR---DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLR  214 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~Lk  214 (290)
                                       .+...++.+.+.|....+   .....+||+|++-.-       |+......++..+..  +|+
T Consensus        87 -----------------~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP-------Y~~~~~~~~l~~i~~~~~L~  142 (182)
T d2fhpa1          87 -----------------TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-------YAKQEIVSQLEKMLERQLLT  142 (182)
T ss_dssp             -----------------HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-------GGGCCHHHHHHHHHHTTCEE
T ss_pred             -----------------hhcccccccccccchhhhhhhcccCCCcceEEechh-------hhhhHHHHHHHHHHHCCCCC
Confidence                             223346888888875421   123468999997432       233445667777754  699


Q ss_pred             CCcEEEEeeC
Q 047406          215 PGGIFVLEPQ  224 (290)
Q Consensus       215 pgG~l~i~~~  224 (290)
                      |+|++++++.
T Consensus       143 ~~giIi~E~~  152 (182)
T d2fhpa1         143 NEAVIVCETD  152 (182)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCEEEEEEcC
Confidence            9999999753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.89  E-value=1.4e-09  Score=93.23  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=38.9

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      ..|++|||+|||+|.+++.++. .++.+|+|+|+|+.+++.|+.|+
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~   91 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNC   91 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHHHHcc
Confidence            5799999999999999887665 45568999999999999998863

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=2.3e-09  Score=91.34  Aligned_cols=125  Identities=23%  Similarity=0.208  Sum_probs=88.4

Q ss_pred             CCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhh
Q 047406           47 LNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE  126 (290)
Q Consensus        47 ~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  126 (290)
                      |+-.+.++.+..  .++..++|++||+|.++..+++.+|..+|+|+|.++.+++.|+..+..                  
T Consensus        10 Vll~evi~~l~~--~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~------------------   69 (192)
T d1m6ya2          10 VMVREVIEFLKP--EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE------------------   69 (192)
T ss_dssp             TTHHHHHHHHCC--CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG------------------
T ss_pred             hHHHHHHHhhCC--CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc------------------
Confidence            333344444432  478999999999999999999998888999999999999999986543                  


Q ss_pred             hhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC----CCCCCCceeEEEEchhhhhhhhcCCch--
Q 047406          127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG----RDSPEKYYDAILCLSVTKWIHLNWGDD--  200 (290)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~fD~I~~~~vl~~~~l~~~~~--  200 (290)
                                                      ...++.+.+.+|.+.    .....++||.|+.-..+.-..++....  
T Consensus        70 --------------------------------~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~  117 (192)
T d1m6ya2          70 --------------------------------FSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENREL  117 (192)
T ss_dssp             --------------------------------GTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHH
T ss_pred             --------------------------------ccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccc
Confidence                                            223577888887652    112347899987632221122222222  


Q ss_pred             -HHHHHHHHHHhhcCCCcEEEEee
Q 047406          201 -GLITLFMRIWKLLRPGGIFVLEP  223 (290)
Q Consensus       201 -~~~~~l~~~~~~LkpgG~l~i~~  223 (290)
                       .....+....++|+|||.+++..
T Consensus       118 ~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2         118 ENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHhcCCCCeeeeec
Confidence             33688889999999999998853

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.82  E-value=4.8e-09  Score=95.54  Aligned_cols=115  Identities=14%  Similarity=0.043  Sum_probs=80.9

Q ss_pred             hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      +...++.+|||++||+|.+++.++..  +.+|+++|+|+.+++.|+.|+..                             
T Consensus       128 ~~~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~l-----------------------------  176 (309)
T d2igta1         128 ETADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVL-----------------------------  176 (309)
T ss_dssp             HHSSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHH-----------------------------
T ss_pred             hhccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhh-----------------------------
Confidence            34457899999999999999987764  44899999999999999999876                             


Q ss_pred             hhhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCC---CCCCceeEEEEchhh---hhhhhcC-CchHHHHHHHHH
Q 047406          138 VTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD---SPEKYYDAILCLSVT---KWIHLNW-GDDGLITLFMRI  209 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl---~~~~l~~-~~~~~~~~l~~~  209 (290)
                                         +++. ..+.|.+.|..+.+.   ....+||+|++-.-.   .--...| -.+.+..++..+
T Consensus       177 -------------------n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~  237 (309)
T d2igta1         177 -------------------AGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDIC  237 (309)
T ss_dssp             -------------------HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHH
T ss_pred             -------------------hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHH
Confidence                               3333 258899999865321   134789999983110   0000000 013456777888


Q ss_pred             HhhcCCCcEEEEe
Q 047406          210 WKLLRPGGIFVLE  222 (290)
Q Consensus       210 ~~~LkpgG~l~i~  222 (290)
                      ..+|+|||.+++.
T Consensus       238 ~~ll~~~g~~ll~  250 (309)
T d2igta1         238 REILSPKALGLVL  250 (309)
T ss_dssp             HHTBCTTCCEEEE
T ss_pred             HHhcCCCCCEEEE
Confidence            9999999976653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=7.5e-09  Score=89.27  Aligned_cols=118  Identities=15%  Similarity=0.153  Sum_probs=85.1

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      |..+.+. ...++|||+|||+|..++.+|...+ ..+|+++|++++.++.|+.++..                       
T Consensus        48 L~~lv~~-~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~-----------------------  103 (214)
T d2cl5a1          48 MDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF-----------------------  103 (214)
T ss_dssp             HHHHHHH-HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-----------------------
T ss_pred             HHHHHHh-hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHH-----------------------
Confidence            4444444 3558999999999999999998765 46999999999999999998876                       


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLF  206 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l  206 (290)
                                               .++.+++++..+|..+.++.     ....||+|+.-..-.       .......+
T Consensus       104 -------------------------~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~-------~~~~~~~l  151 (214)
T d2cl5a1         104 -------------------------AGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD-------RYLPDTLL  151 (214)
T ss_dssp             -------------------------HTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGG-------GHHHHHHH
T ss_pred             -------------------------cCCCccceeeeccccccccchhhcccccccceeeeccccc-------ccccHHHH
Confidence                                     34555688888887663222     346799999742211       11123346


Q ss_pred             HHHHhhcCCCcEEEEeeCCC
Q 047406          207 MRIWKLLRPGGIFVLEPQPW  226 (290)
Q Consensus       207 ~~~~~~LkpgG~l~i~~~~~  226 (290)
                      .+.+++|+|||++++..-.|
T Consensus       152 ~~~~~lLkpGGvIv~Ddvl~  171 (214)
T d2cl5a1         152 LEKCGLLRKGTVLLADNVIV  171 (214)
T ss_dssp             HHHTTCEEEEEEEEESCCCC
T ss_pred             HHHhCccCCCcEEEEeCcCC
Confidence            67788999999988854333

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=6.1e-09  Score=88.88  Aligned_cols=47  Identities=19%  Similarity=0.388  Sum_probs=40.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|++|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+.|+..
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~   91 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGE   91 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHH
Confidence            57899999999999999987664 556899999999999999998643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.79  E-value=7.8e-09  Score=90.16  Aligned_cols=117  Identities=20%  Similarity=0.328  Sum_probs=90.8

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG  131 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (290)
                      +..+.+. ...++||||||++|.-++.+|...+ ..+|+.+|.++...+.|+.++..                       
T Consensus        51 L~~L~~~-~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~-----------------------  106 (227)
T d1susa1          51 LSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-----------------------  106 (227)
T ss_dssp             HHHHHHH-HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-----------------------
T ss_pred             HHHHHHh-cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHH-----------------------
Confidence            3333333 4678999999999999999998776 46999999999999999999887                       


Q ss_pred             CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC------CCCceeEEEEchhhhhhhhcCCchHHHHH
Q 047406          132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIHLNWGDDGLITL  205 (290)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~  205 (290)
                                               .++.+.+.+..++..+.++.      ..++||+|+.         +.++......
T Consensus       107 -------------------------~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFi---------Da~k~~y~~~  152 (227)
T d1susa1         107 -------------------------AGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFV---------DADKDNYLNY  152 (227)
T ss_dssp             -------------------------TTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEE---------CSCSTTHHHH
T ss_pred             -------------------------hccccceeeeehHHHHHHHHHHhccccCCceeEEEe---------ccchhhhHHH
Confidence                                     34556788888887653221      2468999995         3345666788


Q ss_pred             HHHHHhhcCCCcEEEEeeCCCc
Q 047406          206 FMRIWKLLRPGGIFVLEPQPWV  227 (290)
Q Consensus       206 l~~~~~~LkpgG~l~i~~~~~~  227 (290)
                      +..+.++|+|||++++..--|.
T Consensus       153 ~e~~~~ll~~gGiii~DNvl~~  174 (227)
T d1susa1         153 HKRLIDLVKVGGVIGYDNTLWN  174 (227)
T ss_dssp             HHHHHHHBCTTCCEEEETTTGG
T ss_pred             HHHHHhhcCCCcEEEEccCCCC
Confidence            9999999999999999655443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=8.6e-07  Score=80.58  Aligned_cols=125  Identities=22%  Similarity=0.271  Sum_probs=89.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+|||+-||+|.+++.||+.  ..+|+|+|+++.+++.|+.++..                                
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~--------------------------------  256 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARL--------------------------------  256 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHh--------------------------------
Confidence            36789999999999999999986  45999999999999999998876                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG  217 (290)
                                      +++ .++.|...+..+.+..   ....+|+|+.-.-         ..++...+..+.+ ++|.-
T Consensus       257 ----------------n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPP---------R~G~~~~~~~l~~-~~~~~  309 (358)
T d1uwva2         257 ----------------NGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA---------RAGAAGVMQQIIK-LEPIR  309 (358)
T ss_dssp             ----------------TTC-CSEEEEECCTTSCCSSSGGGTTCCSEEEECCC---------TTCCHHHHHHHHH-HCCSE
T ss_pred             ----------------ccc-ccceeeecchhhhhhhhhhhhccCceEEeCCC---------CccHHHHHHHHHH-cCCCE
Confidence                            333 3588888877653222   2467899986322         2334455666655 47888


Q ss_pred             EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHH--HHHHcCCeeeEeccC
Q 047406          218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEI--LLDKIGFRTVEDIGS  271 (290)
Q Consensus       218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ll~~~Gf~~v~~~~~  271 (290)
                      ++++++.|                         ..+.+.  .|.+.||++.++..-
T Consensus       310 ivYVSCnp-------------------------~TlaRDl~~l~~~gy~l~~i~~~  340 (358)
T d1uwva2         310 IVYVSCNP-------------------------ATLARDSEALLKAGYTIARLAML  340 (358)
T ss_dssp             EEEEESCH-------------------------HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEeCCH-------------------------HHHHHHHHHHHHCCCeEeEEEEE
Confidence            99998652                         223332  355789998877554

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.54  E-value=2.9e-07  Score=76.92  Aligned_cols=108  Identities=10%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ..+.+|||+.||||++++..+.+ ++.+|+.+|.+..+++..++|+...                               
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l-------------------------------   89 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTL-------------------------------   89 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred             cccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhh-------------------------------
Confidence            57899999999999999997765 5679999999999999999998762                               


Q ss_pred             HHHHHHhhhcCCCccccCc-CcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCC
Q 047406          141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRP  215 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~Lkp  215 (290)
                                       +. .....+...|..+.+  ......||+|++-       -++.......++..+..  +|++
T Consensus        90 -----------------~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD-------PPY~~~~~~~~l~~l~~~~~L~~  145 (183)
T d2ifta1          90 -----------------KCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD-------PPFHFNLAEQAISLLCENNWLKP  145 (183)
T ss_dssp             -----------------TCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC-------CCSSSCHHHHHHHHHHHTTCEEE
T ss_pred             -----------------cccccccccccccccccccccccCCcccEEEec-------hhHhhhhHHHHHHHHHHhCCcCC
Confidence                             11 112445555543321  2234579999963       23344456677777765  6999


Q ss_pred             CcEEEEeeC
Q 047406          216 GGIFVLEPQ  224 (290)
Q Consensus       216 gG~l~i~~~  224 (290)
                      +|++++++.
T Consensus       146 ~~liiiE~~  154 (183)
T d2ifta1         146 NALIYVETE  154 (183)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=4.2e-07  Score=81.84  Aligned_cols=112  Identities=10%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE  135 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (290)
                      .++.+|||.+||+|.+...+..+..     ..+++|+|+++.++..|+.++..++                         
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-------------------------  170 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------------------------  170 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------------------------
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-------------------------
Confidence            4567899999999999888765432     3479999999999999988766521                         


Q ss_pred             hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhh------------hhcCCchHHH
Q 047406          136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWI------------HLNWGDDGLI  203 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~------------~l~~~~~~~~  203 (290)
                                               ....+...|....  .+..+||+|+++.-....            ..........
T Consensus       171 -------------------------~~~~~~~~d~~~~--~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~  223 (328)
T d2f8la1         171 -------------------------QKMTLLHQDGLAN--LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHF  223 (328)
T ss_dssp             -------------------------CCCEEEESCTTSC--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHH
T ss_pred             -------------------------hhhhhhccccccc--cccccccccccCCCCCCCccchhhhhcchhcccCcchHHH
Confidence                                     1244555565442  345789999997432100            0000111223


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      -++..+.++|+|||++++..+
T Consensus       224 ~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         224 LFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCceEEEec
Confidence            568889999999999888544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=9.4e-08  Score=86.83  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=82.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||.||.|.|..+..+++..+..+|+++|+++.+++.|++++.....                             
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-----------------------------  126 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-----------------------------  126 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-----------------------------
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-----------------------------
Confidence            466899999999999999988766667999999999999999997654110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~  218 (290)
                                     ...-..++.+...|..+.+......||+|++-..-.+.. ......+  ..+++.+.+.|+|||+
T Consensus       127 ---------------~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~-~~~~~~L~t~eF~~~~~~~L~p~Gv  190 (312)
T d1uira_         127 ---------------GAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGV  190 (312)
T ss_dssp             ---------------TGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEE
T ss_pred             ---------------CccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccc-cchhhhhhhHHHHHHHHHhcCCCce
Confidence                           000123578888888774334457899999632100000 0000112  5789999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       191 lv~~~  195 (312)
T d1uira_         191 MGMQT  195 (312)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99853

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=1.4e-07  Score=85.11  Aligned_cols=116  Identities=14%  Similarity=0.058  Sum_probs=83.1

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||.|.|..+..+++..+..+|+++||++.+++.|++.+.....                             
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~-----------------------------  138 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-----------------------------  138 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-----------------------------
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc-----------------------------
Confidence            456899999999999999988866667899999999999999987654110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~  218 (290)
                                      .--..++.+...|....+......||+|++-..-.+..   ....  -..+++.+.+.|+|||+
T Consensus       139 ----------------~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~---~~~~L~t~efy~~~~~~L~~~Gi  199 (295)
T d1inla_         139 ----------------GFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGV  199 (295)
T ss_dssp             ----------------GGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-------------CCSHHHHHHHHHHEEEEEE
T ss_pred             ----------------cccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcC---chhhhccHHHHHHHHhhcCCCcE
Confidence                            00123678888887775555567899999743221100   0011  16889999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      +++..+
T Consensus       200 ~v~q~~  205 (295)
T d1inla_         200 FSAETE  205 (295)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=7.8e-07  Score=76.18  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .++.+++|+|||.|..++.+|-.+|..+++.+|.+...+...+.-+..                                
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~--------------------------------  111 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE--------------------------------  111 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------------------------------
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHH--------------------------------
Confidence            456899999999999999999989999999999999998888876654                                


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV  220 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~  220 (290)
                                      .++. ++.+......+.  ....+||+|+|+.+.          .+..+++-+.++++++|.++
T Consensus       112 ----------------L~L~-nv~v~~~R~E~~--~~~~~fD~V~sRA~~----------~~~~ll~~~~~~l~~~g~~~  162 (207)
T d1jsxa_         112 ----------------LKLE-NIEPVQSRVEEF--PSEPPFDGVISRAFA----------SLNDMVSWCHHLPGEQGRFY  162 (207)
T ss_dssp             ----------------TTCS-SEEEEECCTTTS--CCCSCEEEEECSCSS----------SHHHHHHHHTTSEEEEEEEE
T ss_pred             ----------------cCCc-ceeeeccchhhh--ccccccceehhhhhc----------CHHHHHHHHHHhcCCCcEEE
Confidence                            3443 577777776552  234689999998875          35678888999999999999


Q ss_pred             EeeC
Q 047406          221 LEPQ  224 (290)
Q Consensus       221 i~~~  224 (290)
                      +--+
T Consensus       163 ~~KG  166 (207)
T d1jsxa_         163 ALKG  166 (207)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            9654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=4.9e-07  Score=80.51  Aligned_cols=115  Identities=19%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||.|.|..+..+.+..+..+|+++||++.+++.|+..+.....                             
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~-----------------------------  124 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG-----------------------------  124 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT-----------------------------
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc-----------------------------
Confidence            456899999999999999988766667999999999999999997643110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~  218 (290)
                                      ..-..++.+...|....+.....+||+|+.-..-.+ .   ....  -..+++.+.+.|+|+|+
T Consensus       125 ----------------~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~-~---~~~~L~t~eFy~~~~~~L~~~Gv  184 (274)
T d1iy9a_         125 ----------------KLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-G---PAVNLFTKGFYAGIAKALKEDGI  184 (274)
T ss_dssp             ----------------TTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-S---CCCCCSTTHHHHHHHHHEEEEEE
T ss_pred             ----------------cccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCC-C---cchhhccHHHHHHHHhhcCCCce
Confidence                            011236788888877644445678999997422110 0   0011  25789999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      ++...+
T Consensus       185 ~v~q~~  190 (274)
T d1iy9a_         185 FVAQTD  190 (274)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.5e-07  Score=81.26  Aligned_cols=114  Identities=12%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||.|.|..+..+.+..+..+|+++||++.+++.|++.+.....                             
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-----------------------------  127 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-----------------------------  127 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----------------------------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-----------------------------
Confidence            456899999999999999988766677999999999999999997653110                             


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~  218 (290)
                                      .....++.+...|....+....++||+|++-..-. ..   ....+  ..+++.+.+.|+|||+
T Consensus       128 ----------------~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p-~~---~~~~L~t~eF~~~~~~~L~~~Gi  187 (285)
T d2o07a1         128 ----------------GYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDP-MG---PAESLFKESYYQLMKTALKEDGV  187 (285)
T ss_dssp             ----------------GGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC---------------CHHHHHHHHHEEEEEE
T ss_pred             ----------------ccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCC-CC---cccccccHHHHHHHHHhcCCCCe
Confidence                            01124688888887664434557899999842211 11   01122  4789999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       188 ~v~q~  192 (285)
T d2o07a1         188 LCCQG  192 (285)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99964

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=2.6e-06  Score=74.42  Aligned_cols=104  Identities=18%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA  141 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (290)
                      .+.+++|||+|.|..++.+|-.+|..+++.+|-+..-+...+.-...                                 
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~---------------------------------  116 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA---------------------------------  116 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHH---------------------------------
Confidence            56799999999999999999989999999999999888887776554                                 


Q ss_pred             HHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406          142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF  219 (290)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l  219 (290)
                                     .++. ++.+......+.  ......+||+|+|+.+.          .+..+++-+..+++++|.+
T Consensus       117 ---------------L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva----------~l~~ll~~~~~~l~~~g~~  170 (239)
T d1xdza_         117 ---------------LQLE-NTTFCHDRAETFGQRKDVRESYDIVTARAVA----------RLSVLSELCLPLVKKNGLF  170 (239)
T ss_dssp             ---------------HTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEECCS----------CHHHHHHHHGGGEEEEEEE
T ss_pred             ---------------hCCC-CcEEEeehhhhccccccccccceEEEEhhhh----------CHHHHHHHHhhhcccCCEE
Confidence                           2332 355555443321  11234689999998774          4678899999999999999


Q ss_pred             EEeeC
Q 047406          220 VLEPQ  224 (290)
Q Consensus       220 ~i~~~  224 (290)
                      ++--+
T Consensus       171 i~~KG  175 (239)
T d1xdza_         171 VALKA  175 (239)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            99554

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.31  E-value=3.8e-07  Score=82.83  Aligned_cols=115  Identities=15%  Similarity=0.101  Sum_probs=79.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||.|.|..+..+++..+..+|+++||++.+++.|++.+....                              
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~------------------------------  154 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS------------------------------  154 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS------------------------------
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc------------------------------
Confidence            45689999999999999998886555699999999999999998653200                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~  218 (290)
                                     ..--..++.+...|....+.....+||+|++-..-. ..   ....+  ..+++.+.+.|+|||+
T Consensus       155 ---------------~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp-~~---~~~~L~t~eFy~~~~~~L~~~Gi  215 (312)
T d2b2ca1         155 ---------------CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDP-VG---PAESLFGQSYYELLRDALKEDGI  215 (312)
T ss_dssp             ---------------GGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------------HHHHHHHHEEEEEE
T ss_pred             ---------------cccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCC-CC---cchhhhhHHHHHHHHhhcCCCcE
Confidence                           000123577888887764333457899999842211 00   11112  5789999999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      ++...+
T Consensus       216 ~v~q~~  221 (312)
T d2b2ca1         216 LSSQGE  221 (312)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=1.1e-05  Score=72.83  Aligned_cols=140  Identities=21%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ..+|.+|||+.+|+|.=+..++.... ...+++.|+++..++..+.++...+                            
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----------------------------  165 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----------------------------  165 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----------------------------
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----------------------------
Confidence            36889999999999998888887765 3479999999999999999887632                            


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc------hhhh-h--hhhcCCc-------hHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL------SVTK-W--IHLNWGD-------DGL  202 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~------~vl~-~--~~l~~~~-------~~~  202 (290)
                                          . .++.+...|... .+.....||.|++-      .++. .  +...+..       ..+
T Consensus       166 --------------------~-~~i~~~~~d~~~-~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q  223 (313)
T d1ixka_         166 --------------------V-LNVILFHSSSLH-IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQ  223 (313)
T ss_dssp             --------------------C-CSEEEESSCGGG-GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHH
T ss_pred             --------------------h-hccccccccccc-cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHH
Confidence                                2 234555555544 23335679999981      1110 0  0000111       334


Q ss_pred             HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406          203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED  268 (290)
Q Consensus       203 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~  268 (290)
                      .+++.+..++|+|||+++.++-.... .++                  +..++.++++.+|+.+..
T Consensus       224 ~~iL~~a~~~lk~gG~lVYsTCSl~~-eEN------------------E~VV~~~L~~~~~~~~~~  270 (313)
T d1ixka_         224 MRLLEKGLEVLKPGGILVYSTCSLEP-EEN------------------EFVIQWALDNFDVELLPL  270 (313)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCCG-GGT------------------HHHHHHHHHHSSEEEECC
T ss_pred             HHHHHhhhheeCCCcEEEEeeccCCh-HhH------------------HHHHHHHHhcCCCEEeec
Confidence            68999999999999999987642211 111                  334455677777776644

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.25  E-value=7.5e-07  Score=79.27  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      ++..+||.||+|.|..+..+++. +..+|+++|+++.+++.|+.......                      +..     
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~----------------------~~~-----  122 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDN----------------------GLL-----  122 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTT----------------------THH-----
T ss_pred             CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhcc----------------------chh-----
Confidence            56789999999999999887764 55689999999999999988643200                      000     


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcE
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGI  218 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~  218 (290)
                        +   +.       ......++.+...|....+. ..++||+|++-..-. ..   ....+  ..+++.+.+.|+|||+
T Consensus       123 --~---~~-------~~~~d~rv~i~~~Da~~~l~-~~~~yDvIi~D~~~~-~~---~~~~L~t~eF~~~~~~~L~~~Gv  185 (276)
T d1mjfa_         123 --E---AM-------LNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDP-VG---PAKVLFSEEFYRYVYDALNNPGI  185 (276)
T ss_dssp             --H---HH-------HTTCCSSEEEEESCHHHHHH-HCCCEEEEEEECCCC-C--------TTSHHHHHHHHHHEEEEEE
T ss_pred             --h---hh-------hccCCCCceEEEChHHHHHh-ccCCCCEEEEeCCCC-CC---CcccccCHHHHHhhHhhcCCCce
Confidence              0   00       01123467888888765322 246799999732211 00   00111  5789999999999999


Q ss_pred             EEEee
Q 047406          219 FVLEP  223 (290)
Q Consensus       219 l~i~~  223 (290)
                      +++..
T Consensus       186 ~v~q~  190 (276)
T d1mjfa_         186 YVTQA  190 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99854

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.23  E-value=1.8e-06  Score=77.35  Aligned_cols=115  Identities=22%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      +..++||-||-|.|..+..+.+..+..+|+++||++.+++.|+..+....                              
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~------------------------------  128 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA------------------------------  128 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------------------------------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh------------------------------
Confidence            45689999999999999998886666689999999999999999765411                              


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGG  217 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG  217 (290)
                                     ......++.+...|...... ...+.||+|++-..-. ..   ....+  ..+++.+.+.|+|||
T Consensus       129 ---------------~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp-~~---~~~~L~t~eF~~~~~~~L~~~G  189 (290)
T d1xj5a_         129 ---------------IGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDP-IG---PAKELFEKPFFQSVARALRPGG  189 (290)
T ss_dssp             ---------------GGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCT-TS---GGGGGGSHHHHHHHHHHEEEEE
T ss_pred             ---------------ccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCC-CC---cchhhCCHHHHHHHHHhcCCCc
Confidence                           01113457788888665432 2446899999732210 00   01112  678999999999999


Q ss_pred             EEEEeeC
Q 047406          218 IFVLEPQ  224 (290)
Q Consensus       218 ~l~i~~~  224 (290)
                      ++++..+
T Consensus       190 i~v~q~~  196 (290)
T d1xj5a_         190 VVCTQAE  196 (290)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=6.9e-06  Score=68.54  Aligned_cols=38  Identities=18%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNR   98 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~   98 (290)
                      .++.+|||.|||+|.++..+....+. ..++|+|+++.+
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~   56 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA   56 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH
Confidence            56789999999999998887766553 579999998754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.9e-06  Score=73.06  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=79.4

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT  139 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (290)
                      ..+|.+|||+.+++|.=+..+++.+....|+++|+++..++..+.++...                              
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~------------------------------  149 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL------------------------------  149 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT------------------------------
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc------------------------------
Confidence            36789999999999999999998877778999999999999999988762                              


Q ss_pred             hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc------hhhhh---hhhcCCc-------hHHH
Q 047406          140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL------SVTKW---IHLNWGD-------DGLI  203 (290)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~------~vl~~---~~l~~~~-------~~~~  203 (290)
                                        +.. .+.....|...........||.|++-      .++..   +-..|..       .-+.
T Consensus       150 ------------------g~~-~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~  210 (284)
T d1sqga2         150 ------------------GMK-ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS  210 (284)
T ss_dssp             ------------------TCC-CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHH
T ss_pred             ------------------ccc-ceeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHH
Confidence                              221 23333333221111234679999981      11110   0001111       2347


Q ss_pred             HHHHHHHhhcCCCcEEEEeeC
Q 047406          204 TLFMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~~~  224 (290)
                      ++|.+..++|+|||+++.++-
T Consensus       211 ~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         211 EILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             HHHHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHHHhcCCCceEEEeee
Confidence            899999999999999999765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.07  E-value=5.1e-06  Score=72.14  Aligned_cols=43  Identities=23%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .++.+|||||||+|.+|..|+..  +.+|+++|+|+..++.++..
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~   62 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENK   62 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHH
Confidence            57899999999999999999986  45899999999998888764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.04  E-value=2.9e-05  Score=72.21  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=98.6

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCC-------------ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNC-------------RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~-------------~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      ++.+|+|.+||+|.+.+.+.++...             ..++|+|+++.+...|+.++..++.                 
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~-----------------  224 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-----------------  224 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-----------------
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC-----------------
Confidence            5789999999999998887664421             2599999999999999988765220                 


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh--hh-hh--------cC
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK--WI-HL--------NW  197 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~--~~-~l--------~~  197 (290)
                                                    ..........|....  .+...||+|+++.-..  +. ..        ..
T Consensus       225 ------------------------------~~~~~~i~~~d~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~  272 (425)
T d2okca1         225 ------------------------------GTDRSPIVCEDSLEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVE  272 (425)
T ss_dssp             ------------------------------CSSCCSEEECCTTTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSC
T ss_pred             ------------------------------ccccceeecCchhhh--hcccccceEEecCCCCCCccccchhhhhhcccc
Confidence                                          011234566666553  3457899999964331  00 00        00


Q ss_pred             CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCC
Q 047406          198 GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSS  277 (290)
Q Consensus       198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~  277 (290)
                      ....-..++..+.++|++||.+++..+.-  ...        ..      -....+.+.++++.-...+-....+-.  .
T Consensus       273 ~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~--~L~--------~~------~~~~~iR~~Ll~~~~i~aIi~LP~~~F--~  334 (425)
T d2okca1         273 TKNNQLNFLQHMMLMLKTGGRAAVVLPDN--VLF--------EA------GAGETIRKRLLQDFNLHTILRLPTGIF--Y  334 (425)
T ss_dssp             CSCHHHHHHHHHHHHEEEEEEEEEEEEHH--HHH--------CS------THHHHHHHHHHHHEEEEEEEECCSSSS--S
T ss_pred             cccHHHHHHHHHHHhcCCCCeEEEEechH--Hhh--------hh------hhHHHHHHHHHHhcchhHhhcCCcccc--c
Confidence            11223468899999999999988865410  000        00      011345555777655444443443211  2


Q ss_pred             CCCCCcceeeecC
Q 047406          278 KTGFNRPIFLFRK  290 (290)
Q Consensus       278 ~~~~~~~~~~~~k  290 (290)
                      .++....|++|+|
T Consensus       335 ~t~v~t~Ilil~K  347 (425)
T d2okca1         335 AQGVKANVLFFSK  347 (425)
T ss_dssp             STTCCEEEEEEEE
T ss_pred             CCCCCeEEEEEEC
Confidence            3666777777764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.03  E-value=1e-05  Score=67.61  Aligned_cols=107  Identities=23%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA  140 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (290)
                      .+|..++|..||.|.++..+.+.  ..+|+|+|.++.+++.|+..                                   
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~-----------------------------------   59 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL-----------------------------------   59 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT-----------------------------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc-----------------------------------
Confidence            58899999999999999999886  34899999999999888652                                   


Q ss_pred             HHHHHHhhhcCCCccccCcCcceeEeecccccC---C-CCCCCceeEEEEchhhhhhhhcCCch---HHHHHHHHHHhhc
Q 047406          141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---R-DSPEKYYDAILCLSVTKWIHLNWGDD---GLITLFMRIWKLL  213 (290)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~-~~~~~~fD~I~~~~vl~~~~l~~~~~---~~~~~l~~~~~~L  213 (290)
                                        ...++.+.+.++.+.   . ....+.+|.|+.-..+.-.+++-...   .+...|.....+|
T Consensus        60 ------------------~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~l  121 (182)
T d1wg8a2          60 ------------------HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVL  121 (182)
T ss_dssp             ------------------CCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHE
T ss_pred             ------------------cccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhh
Confidence                              112467777776552   0 11236789888732221122221112   2356788889999


Q ss_pred             CCCcEEEEe
Q 047406          214 RPGGIFVLE  222 (290)
Q Consensus       214 kpgG~l~i~  222 (290)
                      +|||.+++.
T Consensus       122 k~gg~~~ii  130 (182)
T d1wg8a2         122 APGGRLVVI  130 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCeEEEE
Confidence            999999985

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.99  E-value=5.7e-07  Score=78.87  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             cccCCCCCchh-hHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           42 RIGQGLNEDPR-FKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        42 ~~~~~~~~~~~-l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +++|+...++. ++.+...  ..++.+|||||||+|.+|..|++.  +.+|+++|+|+.+++.++.
T Consensus         6 k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~   69 (245)
T d1yuba_           6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSE   69 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSC
T ss_pred             CCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhh
Confidence            45566566644 3444443  357789999999999999999987  4589999999977655543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=5.6e-05  Score=62.74  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      +.++.+|||+||++|.++..+++..+ ...|+++|+.+                                          
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~------------------------------------------   57 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP------------------------------------------   57 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC------------------------------------------
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc------------------------------------------
Confidence            46889999999999999998887654 35899999854                                          


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchh--------hhhhhhcCCchHHH
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSV--------TKWIHLNWGDDGLI  203 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~v--------l~~~~l~~~~~~~~  203 (290)
                                        ..-.+.+.+.+.|+.+..       .....++|+|+|-..        .+....   .+-..
T Consensus        58 ------------------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~---~~L~~  116 (180)
T d1ej0a_          58 ------------------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRA---MYLVE  116 (180)
T ss_dssp             ------------------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHH---HHHHH
T ss_pred             ------------------ccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHH---HHHHH
Confidence                              111234667777765420       113467999999322        111100   01224


Q ss_pred             HHHHHHHhhcCCCcEEEEe
Q 047406          204 TLFMRIWKLLRPGGIFVLE  222 (290)
Q Consensus       204 ~~l~~~~~~LkpgG~l~i~  222 (290)
                      ..+.-+.++|++||.+++-
T Consensus       117 ~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_         117 LALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHhhhhccCCCCcEEEE
Confidence            6667778899999999995

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.0003  Score=62.38  Aligned_cols=48  Identities=23%  Similarity=0.300  Sum_probs=42.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|.+|||+.+|+|.-+..+|+... ...|+++|+++..++..+.++..
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r  141 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR  141 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh
Confidence            5789999999999999998887764 45899999999999999998876

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=2.9e-05  Score=74.35  Aligned_cols=168  Identities=13%  Similarity=0.073  Sum_probs=95.2

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcC------------------CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFN------------------CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANA  122 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~------------------~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~  122 (290)
                      .++.+|+|..||+|.+.+.......                  ...++|+|+++.+...|+.++..++..          
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~----------  232 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE----------  232 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC----------
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc----------
Confidence            3578999999999999877655321                  125899999999999999887652210          


Q ss_pred             chhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh--h------hh
Q 047406          123 SRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK--W------IH  194 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~--~------~~  194 (290)
                                                        ..+.....+...+....-......||+|+++.-.-  |      ..
T Consensus       233 ----------------------------------~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~  278 (524)
T d2ar0a1         233 ----------------------------------GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF  278 (524)
T ss_dssp             ----------------------------------CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCC
T ss_pred             ----------------------------------ccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhh
Confidence                                              11111122333333321011346799999964321  0      00


Q ss_pred             hcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCC
Q 047406          195 LNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGL  274 (290)
Q Consensus       195 l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~  274 (290)
                      .......-.-++..+.+.|+|||++++..+.-  .         +...     -....+.+.++++.-...+-....+-.
T Consensus       279 ~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~--~---------Lf~~-----~~~~~iR~~Ll~~~~i~aII~LP~~~F  342 (524)
T d2ar0a1         279 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN--V---------LFEG-----GKGTDIRRDLMDKCHLHTILRLPTGIF  342 (524)
T ss_dssp             SSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH--H---------HHCC-----THHHHHHHHHHHHEEEEEEEECCSSCS
T ss_pred             ccccccccHHHHHHHHHhccccCcEEEEEehH--H---------hhhh-----hhhHHHHHHHHHcCCceEEEECCCCcC
Confidence            00111223458889999999999999875410  0         0000     011345565777755444433433222


Q ss_pred             CCCCCCCCcceeeecC
Q 047406          275 SSSKTGFNRPIFLFRK  290 (290)
Q Consensus       275 ~~~~~~~~~~~~~~~k  290 (290)
                        ..++....|++|+|
T Consensus       343 --~~t~i~t~Il~l~K  356 (524)
T d2ar0a1         343 --YAQGVKTNVLFFTK  356 (524)
T ss_dssp             --SSCSCCEEEEEEEE
T ss_pred             --CCCCCCeEEEEEEC
Confidence              23677778888764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.82  E-value=1.9e-05  Score=72.94  Aligned_cols=122  Identities=13%  Similarity=0.082  Sum_probs=82.0

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV  138 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (290)
                      ....+.+|||+.||+|..++..|.+.+..+|++.|+|+++++.+++|+...+....                        
T Consensus        42 ~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~------------------------   97 (375)
T d2dula1          42 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL------------------------   97 (375)
T ss_dssp             HHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCC------------------------
T ss_pred             HHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccc------------------------
Confidence            33578999999999999999888887777999999999999999999876321000                        


Q ss_pred             hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406          139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~  218 (290)
                                ......+.......+.+...|....+......||+|..-.        +|.  ...++....+.++.||+
T Consensus        98 ----------~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP--------fGs--~~pfldsAi~a~~~~Gl  157 (375)
T d2dula1          98 ----------RESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP--------FGS--PMEFLDTALRSAKRRGI  157 (375)
T ss_dssp             ----------EECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC--------SSC--CHHHHHHHHHHEEEEEE
T ss_pred             ----------ccccccccccccceeEeehhhhhhhhHhhcCcCCcccCCC--------CCC--cHHHHHHHHHHhccCCE
Confidence                      0000001111223455666665432222346799998532        222  24578889999999999


Q ss_pred             EEEeeC
Q 047406          219 FVLEPQ  224 (290)
Q Consensus       219 l~i~~~  224 (290)
                      |.+..-
T Consensus       158 l~vTaT  163 (375)
T d2dula1         158 LGVTAT  163 (375)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.57  E-value=3.2e-05  Score=66.89  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             hHHhhhhccCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406           53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI  128 (290)
Q Consensus        53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (290)
                      +..+.... ++++|||||++.|.-+..++..+    ...+|+++|+++.....+                          
T Consensus        72 ~~eli~~~-KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~--------------------------  124 (232)
T d2bm8a1          72 YHDMLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP--------------------------  124 (232)
T ss_dssp             HHHHHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC--------------------------
T ss_pred             HHHHHHHh-CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh--------------------------
Confidence            44555554 46899999999998777666543    356899999976322111                          


Q ss_pred             hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC--C-CCCCCceeEEEEchhhhhhhhcCCchHHHHH
Q 047406          129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--R-DSPEKYYDAILCLSVTKWIHLNWGDDGLITL  205 (290)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~  205 (290)
                                                  .....++.+.++|..+.  . ......+|+|+.-.. |.      .......
T Consensus       125 ----------------------------~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~------~~~v~~~  169 (232)
T d2bm8a1         125 ----------------------------ASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA------NTFNIMK  169 (232)
T ss_dssp             ----------------------------GGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CS------SHHHHHH
T ss_pred             ----------------------------hccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-cc------hHHHHHH
Confidence                                        11234688888876542  1 112346788775322 21      1222222


Q ss_pred             HHHHHhhcCCCcEEEEeeC
Q 047406          206 FMRIWKLLRPGGIFVLEPQ  224 (290)
Q Consensus       206 l~~~~~~LkpgG~l~i~~~  224 (290)
                      + .+..+|+|||++++...
T Consensus       170 ~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         170 W-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             H-HHHHTCCTTCEEEECSC
T ss_pred             H-HHhcccCcCCEEEEEcC
Confidence            3 35689999999999653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00022  Score=63.14  Aligned_cols=46  Identities=17%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      ..++.+|||||||.|.+|..|++.  +.+++++|+|+..++..+..+.
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~   64 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQ   64 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHh
Confidence            357889999999999999999987  4599999999999998887543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.19  E-value=0.00014  Score=59.43  Aligned_cols=47  Identities=21%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             hhccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           58 KEWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+.+|.+||-+|||. |..++++++.++..+|+++|.++..++.|++
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            3457899999999997 8889999998877789999999999998876

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00017  Score=62.86  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .++..|||||||.|.+|..|++.  +.+++++|+|+..++..+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~   61 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQT   61 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHH
Confidence            46889999999999999999986  4589999999999888765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00026  Score=57.59  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-+|||. |..++++|+.+++..|+++|.+++.++.+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            46899999999985 7888899998877789999999999988866

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00069  Score=54.43  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+|+-+|||+ |..+.++++.+++.+|+++|.++..++.|++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            346889999999986 6778888888887799999999999998876

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.95  E-value=0.0011  Score=57.63  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCC
Q 047406           59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDID   95 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis   95 (290)
                      .+.++.+|+|+|||+|.++..++...+..++.|+|+-
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            3467789999999999999998877555688898883

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.86  E-value=0.00037  Score=57.95  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             hhccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           58 KEWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        58 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+.+|.+||.+|||. |..+..+|+..++..|+++|.++..++.|++
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            4568999999999998 6778888888888899999999999998876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.76  E-value=0.00063  Score=55.05  Aligned_cols=46  Identities=17%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ...+|.+||-+|||. |..+.++++.++...|+++|.++..++.+++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            357899999999985 5677788888777789999999999988876

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.61  E-value=0.0058  Score=48.44  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=38.3

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|||. |..++++++.++. +|+++|.+++.++.|++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHH
Confidence            357889999999984 7788888887764 89999999999999877

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.49  E-value=0.0016  Score=53.02  Aligned_cols=46  Identities=22%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|||. |..++++++.++...|+++|.++..++.|++
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            457899999999998 8899999999888899999999999888877

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.47  E-value=0.00096  Score=53.13  Aligned_cols=45  Identities=22%  Similarity=0.223  Sum_probs=38.0

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ...+|.+|+-+|+|. |..++++++.++ .+|+++|.+++.++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc
Confidence            457899999999986 677888888776 589999999999988876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0018  Score=52.01  Aligned_cols=44  Identities=23%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|+ | .|..++++|+..+. ++++++-+++.++.+++
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc
Confidence            468999999996 3 46788888888765 89999989888777765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.29  E-value=0.0026  Score=50.94  Aligned_cols=46  Identities=15%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ...+|.+||-+|+|. |..++++++.+++..|+++|.+++.++.+++
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            457899999999986 5677788888887899999999998888876

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0068  Score=53.95  Aligned_cols=43  Identities=19%  Similarity=0.040  Sum_probs=36.7

Q ss_pred             CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|||||+|.|.+|..+.......+++++|+++..++..+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~   85 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNA   85 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            4678999999999999999876545689999999998887665

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.95  E-value=0.0019  Score=51.49  Aligned_cols=46  Identities=26%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             hccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ...++.+||-+||+  .|..++++++..+...|+++|.+++.++.+++
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            45788999999973  35677777787777799999999998888876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.75  E-value=0.0071  Score=48.74  Aligned_cols=46  Identities=17%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|||. |..++++++..++..|+++|.+++.++.|++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            468999999999986 5677778888888899999999999999977

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.68  E-value=0.01  Score=51.26  Aligned_cols=84  Identities=8%  Similarity=-0.052  Sum_probs=60.3

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      .+|||+-||.|..+..+|.. + .+|+++|-+|......+.++........                             
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~-G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~-----------------------------  138 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAE-----------------------------  138 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-T-CCEEEEECCHHHHHHHHHHHHHHHHCTT-----------------------------
T ss_pred             CEEEECCCcccHHHHHHHhC-C-CEEEEEccCHHHHHHHHHHHHHHHhCch-----------------------------
Confidence            48999999999999999886 3 4899999999988888777665211000                             


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchh
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSV  189 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v  189 (290)
                                 ....+..++++...|..+.+......||+|+.-..
T Consensus       139 -----------~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPM  173 (250)
T d2oyra1         139 -----------IGGWLQERLQLIHASSLTALTDITPRPQVVYLDPM  173 (250)
T ss_dssp             -----------THHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCC
T ss_pred             -----------hHHHHhhhheeecCcHHHHHhccCCCCCEEEECCC
Confidence                       00112346899999977755555678999997443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.00086  Score=53.83  Aligned_cols=45  Identities=20%  Similarity=0.147  Sum_probs=38.3

Q ss_pred             hccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+|+-+|+| .|..++++++.+++ +|+++|.+++.++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc
Confidence            45789999999998 47888888888765 89999999999888876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.0095  Score=46.79  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ...++.+||-.|||+ |...+.+++..+ .+|+++|.+++.++.++.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhh
Confidence            457899999999987 456666666654 489999999999888866

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0066  Score=48.27  Aligned_cols=45  Identities=16%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|||. |.+++++|+.+++ +++++|.+++.++.+++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc
Confidence            457899999999985 7788888888765 67789999988877665

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.015  Score=46.29  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=37.0

Q ss_pred             hccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-.|+|.  |..++++|+..++ +|++++.|++.++.+++
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh
Confidence            346889999997765  6788888888764 89999999999888775

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.54  E-value=0.039  Score=45.57  Aligned_cols=45  Identities=29%  Similarity=0.360  Sum_probs=38.5

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      .+|..|||.-||+|..+.. |... +++.+|+|++++.++.|++.+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~a-a~~~-~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIV-AKKL-GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHH-HHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHH-HHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence            6899999999999998876 3433 5799999999999999998764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.42  E-value=0.017  Score=45.91  Aligned_cols=44  Identities=14%  Similarity=0.104  Sum_probs=33.1

Q ss_pred             ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|. | .|..++++|+.+++ ++++++-+++..+.+++
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc
Confidence            467899999773 3 46788888888765 78888888877766654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.41  E-value=0.026  Score=48.07  Aligned_cols=46  Identities=13%  Similarity=0.108  Sum_probs=38.7

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR  107 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~  107 (290)
                      -.+|..|||.-||+|+.+... ... +++.+|+|++++.++.|.+.+.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA-~~l-gR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVA-ERE-SRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHH-HHT-TCEEEEEESCHHHHHHHHGGGS
T ss_pred             ccCCCEEEecCCCCcHHHHHH-HHc-CCcEEEEeCCHHHHHHHHHHHH
Confidence            368999999999999988764 433 5799999999999999988654

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.40  E-value=0.032  Score=47.95  Aligned_cols=155  Identities=12%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             ccCCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406           60 WFEGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN  137 (290)
Q Consensus        60 ~~~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (290)
                      |..+..++|.-||||.+.+..|...-+  -.+...+..+............+. .+.....+........+-.-+.-.+.
T Consensus        48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~-~~a~~~~~~~~~~~~~i~G~D~d~~a  126 (249)
T d1o9ga_          48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLS-PAGLTARELERREQSERFGKPSYLEA  126 (249)
T ss_dssp             CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHH-HHHHHHHhccccccCCccccccCHHH
Confidence            345567999999999998886664221  145666777776666555443211 11111111111111111111111122


Q ss_pred             hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC----CCCceeEEEEchhhhhhhhcCC----chHHHHHHHHH
Q 047406          138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS----PEKYYDAILCLSVTKWIHLNWG----DDGLITLFMRI  209 (290)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~fD~I~~~~vl~~~~l~~~----~~~~~~~l~~~  209 (290)
                      ..+|.+..+|.      ...++.+.+.+.+.|+.+..+.    +...+++|+|+.--- -.+.++    .+...++...+
T Consensus       127 i~~A~~~r~n~------~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYG-ERl~~~~~~~~~~~~~~~~~l  199 (249)
T d1o9ga_         127 AQAARRLRERL------TAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYG-ERTHWEGQVPGQPVAGLLRSL  199 (249)
T ss_dssp             HHHHHHHHHHH------HHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGG-GSSSSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------HHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcc-ccccccccchHHHHHHHHHHH
Confidence            22232222222      1245566799999998663221    345679999963211 112221    13457777788


Q ss_pred             HhhcCCCcEEEEe
Q 047406          210 WKLLRPGGIFVLE  222 (290)
Q Consensus       210 ~~~LkpgG~l~i~  222 (290)
                      .+.+...-+++++
T Consensus       200 ~~~~p~~s~~~it  212 (249)
T d1o9ga_         200 ASALPAHAVIAVT  212 (249)
T ss_dssp             HHHSCTTCEEEEE
T ss_pred             HccCCCCcEEEEe
Confidence            8888777777775

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.15  E-value=0.05  Score=45.51  Aligned_cols=46  Identities=20%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .+|..|||.-||+|..++.....  +++.+|+|+++..++.|.+.+..
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH
Confidence            68999999999999987774443  67999999999999999998876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.92  E-value=0.032  Score=43.92  Aligned_cols=46  Identities=24%  Similarity=0.367  Sum_probs=38.9

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-.|||. |..++++++..++..|+++|.++..++.+++
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            457899999999884 4677888888887899999999999888876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.72  E-value=0.031  Score=44.73  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             ccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +.+|.+||-.|++.  |..++++|+..++ +|++++-+++.++.++.
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~   72 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ   72 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh
Confidence            47899999988865  5788888888764 89999999988777766

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.71  E-value=0.3  Score=41.69  Aligned_cols=45  Identities=9%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL  106 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~  106 (290)
                      ..+.+++|+-||.|.+..-+.+. +..-+.++|+++.+++.-+.|.
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHC
Confidence            46799999999999998886553 3335678999999998877764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.46  E-value=0.25  Score=38.35  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             cEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           65 DCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        65 ~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +|+=||||. | +++..+.+.....+|+++|.+++.++.+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            478899985 3 455555554445689999999999998876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.00  E-value=0.041  Score=44.10  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      .+.+|.+|+-+|||. |..++++++.+++.+|+++|.+++.++.|++.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            357899999999996 67888888888878999999999999999884

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.19  Score=42.92  Aligned_cols=43  Identities=9%  Similarity=0.077  Sum_probs=32.1

Q ss_pred             CCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHH
Q 047406           63 GKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWH  105 (290)
Q Consensus        63 ~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~  105 (290)
                      ..+|+|+-||.|.+..-+.+..-.. -+.++|+++.+++.-+.|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n   45 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN   45 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH
Confidence            4689999999999877764432122 367999999988877765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.62  E-value=0.085  Score=41.61  Aligned_cols=46  Identities=24%  Similarity=0.407  Sum_probs=38.4

Q ss_pred             hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-+|+|. |...+++++.+.+..|+++|.+++.++.+++
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence            467899999999975 4566777777777899999999999888876

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.42  E-value=0.056  Score=43.64  Aligned_cols=44  Identities=11%  Similarity=0.004  Sum_probs=34.9

Q ss_pred             ccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           60 WFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        60 ~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ..+|.+||--|.+.  |..++++|+..+ .+|+++.-+++..+.++.
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~   74 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRV   74 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHH
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHh
Confidence            35688999998654  578999998865 489999988888877765

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=91.88  E-value=1.5  Score=37.74  Aligned_cols=109  Identities=11%  Similarity=-0.024  Sum_probs=69.6

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE  143 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (290)
                      ..|+.+|||-=.-...+. ..+...++=+|. |++++.-++.+...+                                 
T Consensus        91 ~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~---------------------------------  135 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHG---------------------------------  135 (297)
T ss_dssp             CEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTT---------------------------------
T ss_pred             CeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcC---------------------------------
Confidence            467779998766554442 223457788886 888877776655421                                 


Q ss_pred             HHHhhhcCCCccccCcCcceeEeecccccCCC-------CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406          144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRD-------SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG  216 (290)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg  216 (290)
                                   ........+...|+.+.+.       ......-++++-.++.|+    ..+....++..+..+..||
T Consensus       136 -------------~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~i~EGvl~YL----~~~~~~~ll~~i~~~~~~G  198 (297)
T d2uyoa1         136 -------------VTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYL----PATAQDGLFTEIGGLSAVG  198 (297)
T ss_dssp             -------------CCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGGGS----CHHHHHHHHHHHHHTCCTT
T ss_pred             -------------CCCCceEEEecccccchHHHHHHhcCCCCCCCEEEEEccccccC----CHHHHHHHHHHHHHhCCCC
Confidence                         0011234455555543211       122456777777787655    4688899999999999999


Q ss_pred             cEEEEeeC
Q 047406          217 GIFVLEPQ  224 (290)
Q Consensus       217 G~l~i~~~  224 (290)
                      ..+++...
T Consensus       199 S~l~~d~~  206 (297)
T d2uyoa1         199 SRIAVETS  206 (297)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEec
Confidence            99999654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.87  E-value=0.015  Score=46.45  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=35.4

Q ss_pred             hccCCCcEEEecC-CC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGC-NS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+||-.|. |. |..++++|+.+++ +|++++-+++.++.+++
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA   70 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc
Confidence            3578999999884 43 6788888888765 89999999887777665

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.80  E-value=0.84  Score=38.22  Aligned_cols=41  Identities=10%  Similarity=0.070  Sum_probs=31.8

Q ss_pred             CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ++|+|+-||.|.+..-+-+. +-.-+.++|+++.+.+.-+.|
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N   41 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESN   41 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHH
T ss_pred             CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHH
Confidence            47999999999988776554 333566999999888877664

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.48  E-value=0.2  Score=44.90  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             eeEeecccccCCCCCCCceeEEEEchhhhhhh------------hcC----C-----------chHHHHHHHHHHhhcCC
Q 047406          163 VSFKQENFVHGRDSPEKYYDAILCLSVTKWIH------------LNW----G-----------DDGLITLFMRIWKLLRP  215 (290)
Q Consensus       163 i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~------------l~~----~-----------~~~~~~~l~~~~~~Lkp  215 (290)
                      +.-..+.|... -.|.++.|+++|...+||+.            +..    .           ..++..+|+.=.+-|+|
T Consensus       123 ~~gvpGSFY~r-LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  201 (359)
T d1m6ex_         123 INGVPGSFYGR-LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP  201 (359)
T ss_dssp             EEEEESCSSSC-CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred             EEecCCchhhh-cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34455666663 46789999999999999963            110    0           12345666666777999


Q ss_pred             CcEEEEee
Q 047406          216 GGIFVLEP  223 (290)
Q Consensus       216 gG~l~i~~  223 (290)
                      ||.+++..
T Consensus       202 GG~mvl~~  209 (359)
T d1m6ex_         202 GGRMVLTI  209 (359)
T ss_dssp             TCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999943

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.12  Score=41.33  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=32.7

Q ss_pred             ccCC--CcEEEec--CCCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406           60 WFEG--KDCLDIG--CNSGIITIQIAQKFNCRSILGIDIDSNRVADAY  103 (290)
Q Consensus        60 ~~~~--~~vLDiG--cG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~  103 (290)
                      +.+|  .+||-.|  .|.|..++++|+.+++..|++++-+++......
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~   73 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT   73 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh
Confidence            3555  6788877  456899999999988778888887776655443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.30  E-value=0.16  Score=40.34  Aligned_cols=43  Identities=14%  Similarity=0.080  Sum_probs=33.2

Q ss_pred             cCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           61 FEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        61 ~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      +++.+||--|.+  .|..++++|+.+++ +|+++.-+++..+.++.
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~   66 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ   66 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh
Confidence            456678877743  46899999998875 89999998887777765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.73  E-value=0.24  Score=38.59  Aligned_cols=46  Identities=13%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             hccCCCcEEEecCCCC-hhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           59 EWFEGKDCLDIGCNSG-IITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        59 ~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      .+.+|.+|+-+|+|.+ ..+..++....+..|+++|.+++.++.+++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            4678999999999984 555666676677789999999999998876

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.80  E-value=2.6  Score=30.98  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             CcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406           64 KDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        64 ~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~  104 (290)
                      ++|+=+|+  |.++..+++...  +..|+.+|.+++.++.+..
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~   41 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA   41 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhh
Confidence            35566655  777777776543  4589999999998887654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.27  E-value=2.3  Score=32.28  Aligned_cols=39  Identities=10%  Similarity=0.153  Sum_probs=26.5

Q ss_pred             CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406           64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYW  104 (290)
Q Consensus        64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~  104 (290)
                      ++|.=||+|. | .++..+.+.  +.+|++.|.+++.++.+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH
Confidence            4677788864 2 344444332  5689999999988887765

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.91  E-value=0.81  Score=41.19  Aligned_cols=48  Identities=15%  Similarity=0.122  Sum_probs=40.8

Q ss_pred             cCCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      .++..++|+|+..|..+..++...++  .+|+++|.++...+..++++..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            45679999999999988877776553  4899999999999999998775

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.74  E-value=0.16  Score=40.96  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=35.1

Q ss_pred             CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406           62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH  105 (290)
Q Consensus        62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~  105 (290)
                      ++.+|+-||+|. |..++..|..++ ..|++.|.+++.++..+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~   74 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETL   74 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHh
Confidence            568999999997 667777777765 5899999999998877654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.66  E-value=5.7  Score=32.59  Aligned_cols=46  Identities=13%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             cCCCcEEEecCCCCh---hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGI---ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..++++|-.|+++|+   ++..+++.  +.+|+.+|.+++.++.+.+.+..
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~   56 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKS   56 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh
Confidence            468999999988774   44444443  56899999999998888776654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.46  E-value=12  Score=30.36  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             cCCCcEEEecCCCCh---hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406           61 FEGKDCLDIGCNSGI---ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK  108 (290)
Q Consensus        61 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~  108 (290)
                      ..|+++|--|+++|+   ++..+++.  +.+|+.+|.+++.++...+.+..
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~   53 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKG   53 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh
Confidence            578999999998884   55555554  56999999999998888776543