Citrus Sinensis ID: 047429
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.618 | 0.257 | 0.266 | 7e-18 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.587 | 0.240 | 0.281 | 2e-16 | |
| Q9SCT4 | 836 | Probably inactive leucine | no | no | 0.540 | 0.301 | 0.290 | 2e-16 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.577 | 0.244 | 0.279 | 2e-15 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.575 | 0.228 | 0.287 | 2e-15 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.553 | 0.266 | 0.271 | 2e-15 | |
| Q9ZPS9 | 1143 | Serine/threonine-protein | no | no | 0.564 | 0.230 | 0.273 | 6e-15 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.663 | 0.311 | 0.261 | 7e-15 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.542 | 0.263 | 0.282 | 9e-15 | |
| Q9LJM4 | 991 | Receptor-like protein kin | no | no | 0.521 | 0.245 | 0.292 | 1e-14 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 172/406 (42%), Gaps = 118/406 (29%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-NYITGISKCSLPITLVRPKYAFSNV 176
+S+ L LS N+L G P + N+ +L L+ NY+TG +P PK N+
Sbjct: 270 ESMTNLALSQNKLTGSIPS-SLGNLKNLTLLSLFQNYLTG----GIP-----PK--LGNI 317
Query: 177 TSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
S++DL+LS N++TG IP S G++ L L +++N LT +P N +S+
Sbjct: 318 ESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM------ESMIDL 371
Query: 236 MLQNNMLSGSLPG--------------VTELDGTFPKQFCRPSSLVELDLESNQL----- 276
L NN L+GS+P + L G P++ S++ LDL N+L
Sbjct: 372 QLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVP 431
Query: 277 ------------WLRFNHINGSATP------------------------KLCSSPMLQVL 300
+LR NH++G+ P +C LQ +
Sbjct: 432 DSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNI 491
Query: 301 DFSHNNISGMVPTCLNNLSAMVQ-----NGSSNVIVEY-----RIQLIDDPEFDYQDRAL 350
+N++ G +P L + ++++ N + I E + ID +
Sbjct: 492 SLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEIS 551
Query: 351 LVWKP-------IDSIYKITLGLPKSI---------DLSDNNLSGKIPEEITSL------ 388
W+ I S IT +P I DLS NNL G++PE I +L
Sbjct: 552 SNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRL 611
Query: 389 ------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEA 428
L G++P S L++L ++LS+NNFS +IP QTF++
Sbjct: 612 RLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIP-----QTFDS 652
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 149/359 (41%), Gaps = 85/359 (23%)
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L L+ + G P ++ L L +L+ T + +P L N + L
Sbjct: 228 LTVLGLAETSVSGNLPS----SLGKLKKLETLSIYTTMISGEIPSDL-------GNCSEL 276
Query: 180 MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
+DL L +N ++G IP+ G + L+ L + N L +PE N S +L+ L
Sbjct: 277 VDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCS------NLKMIDLS 330
Query: 239 NNMLSGSLPGV--------------TELDGTFPKQFCRPSSLVELDLESNQ--------- 275
N+LSGS+P + G+ P SSLV+L L+ NQ
Sbjct: 331 LNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSEL 390
Query: 276 -----LWLRF---NHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL------------ 315
L L F N + GS P L LQ LD S N+++G +P+ L
Sbjct: 391 GTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLI 450
Query: 316 -NNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD 374
N+LS + N R++L + + I S+ KI +D S
Sbjct: 451 SNSLSGFIPQEIGNCSSLVRLRL------GFNRITGEIPSGIGSLKKINF-----LDFSS 499
Query: 375 NNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
N L GK+P+EI S L G +P S LS L V+++S N FSGKIP+S+
Sbjct: 500 NRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASL 558
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 139/330 (42%), Gaps = 78/330 (23%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178
SL L L NN + G P R++ L SL + S+P++L N
Sbjct: 119 SLRKLSLHNNVIAGSVP----RSLGYLKSLRGVYLFNNRLSGSIPVSL-------GNCPL 167
Query: 179 LMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM- 236
L +LDLS NQ+TG IP S + L L + N L+ LP A+ +F+
Sbjct: 168 LQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLP-------VSVARSYTLTFLD 220
Query: 237 LQNNMLSGSLPGV---------------TELDGTFPKQFCRPSSLVELDLESNQLWLRFN 281
LQ+N LSGS+P G P C+ S L E+ + NQL
Sbjct: 221 LQHNNLSGSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQL----- 275
Query: 282 HINGSATPKLCSS-PMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDD 340
+ P+ C P LQ LDFS+N+I+G +P +NLS++V S N+ + I D
Sbjct: 276 ---SGSIPRECGGLPHLQSLDFSYNSINGTIPDSFSNLSSLV---SLNLESNHLKGPIPD 329
Query: 341 PEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------ 388
ID ++ +T ++L N ++G IPE I ++
Sbjct: 330 --------------AIDRLHNLT-----ELNLKRNKINGPIPETIGNISGIKKLDLSENN 370
Query: 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
G IP S L+ L N+S N SG +P
Sbjct: 371 FTGPIPLSLVHLAKLSSFNVSYNTLSGPVP 400
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 154/368 (41%), Gaps = 99/368 (26%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL----NYITGISKCSLPITLVRPKYAF 173
+SLV L L+ NQL G P + + L L+ + N +G +P
Sbjct: 217 ESLVMLGLAQNQLSGELP----KEIGMLKKLSQVILWENEFSGF----IP-------REI 261
Query: 174 SNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232
SN TSL L L KNQ+ G IPK GD+ L+ L ++ N L +P N S
Sbjct: 262 SNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAI----- 316
Query: 233 QSFMLQNNMLSGSLP-------GV-------TELDGTFPKQFCRPSSLVELDLESNQL-- 276
N L+G +P G+ +L GT P + +L +LDL N L
Sbjct: 317 -EIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTG 375
Query: 277 -------WLRF--------NHINGSATPKLCSSPMLQVLDFSHNNISGMVPT--CL---- 315
+LR N ++G+ PKL L VLD S N++SG +P+ CL
Sbjct: 376 PIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNM 435
Query: 316 -------NNLSAMVQNG--SSNVIVEYRIQLIDDPEFDYQDRALLVWK-PIDSIYKITLG 365
NNLS + G + +V+ R+ R LV + P + ++ +
Sbjct: 436 IILNLGTNNLSGNIPTGITTCKTLVQLRLA-----------RNNLVGRFPSNLCKQVNV- 483
Query: 366 LPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNF 413
+I+L N G IP E+ + G++PR LS LG +N+S+N
Sbjct: 484 --TAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKL 541
Query: 414 SGKIPSSI 421
+G++PS I
Sbjct: 542 TGEVPSEI 549
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 153/344 (44%), Gaps = 76/344 (22%)
Query: 118 KSLVYLDLSNNQLQGPTPD------------YAFRNMTS-----LASLTSL-------NY 153
K++ YLDL NN L G P+ + + N+T L L L N+
Sbjct: 144 KNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNH 203
Query: 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNIL 212
+TG S+P+++ + +L DLDLS NQ+TG IP+ FG++ L++L + +N+L
Sbjct: 204 LTG----SIPVSI-------GTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLL 252
Query: 213 TAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCR---------- 262
+P N S SL L +N L+G +P EL Q R
Sbjct: 253 EGDIPAEIGNCS------SLVQLELYDNQLTGKIPA--ELGNLVQLQALRIYKNKLTSSI 304
Query: 263 PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS--A 320
PSSL L + L L NH+ G + ++ L+VL NN +G P + NL
Sbjct: 305 PSSLFRLT-QLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLT 363
Query: 321 MVQNGSSNVIVEYRIQ---LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNL 377
++ G +N+ E L + D L+ PI S GL K +DLS N +
Sbjct: 364 VLTVGFNNISGELPADLGLLTNLRNLSAHDN--LLTGPIPSSISNCTGL-KLLDLSHNQM 420
Query: 378 SGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+ G+IPR F ++ +L +++ N+F+G+IP I
Sbjct: 421 T------------GEIPRGFGRM-NLTFISIGRNHFTGEIPDDI 451
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 141/320 (44%), Gaps = 62/320 (19%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
+DL N+L G PD + + SL +++ T + +P ++ S + L L
Sbjct: 102 IDLQGNKLGGQIPD----EIGNCVSLAYVDFSTNLLFGDIP-------FSISKLKQLEFL 150
Query: 183 DLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
+L NQ+TG IP + + LKTL + N LT ++P L + LQ L+ NM
Sbjct: 151 NLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLY------WNEVLQYLGLRGNM 204
Query: 242 LSGSL-PGVTELDGTFPKQFCRPSSLVELDLESNQLW---LRFNHINGSATPKLCSSPML 297
L+G+L P + +L G LW +R N++ G+ + +
Sbjct: 205 LTGTLSPDMCQLTG---------------------LWYFDVRGNNLTGTIPESIGNCTSF 243
Query: 298 QVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPE----FDYQDRALLVW 353
++LD S+N I+G++P + L + N + ++I + D D L
Sbjct: 244 EILDVSYNQITGVIPYNIGFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELT-- 301
Query: 354 KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLS 401
PI I L + L N L+G+IP E+ ++ L+GKIP +L
Sbjct: 302 GPIPPILG-NLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLE 360
Query: 402 HLGVVNLSNNNFSGKIPSSI 421
L +NL+NNN G IPS+I
Sbjct: 361 QLFELNLANNNLVGLIPSNI 380
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 143/351 (40%), Gaps = 88/351 (25%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVT 177
S+ YLD S N + G D + N T+L SL S N G +P +F +
Sbjct: 205 SMTYLDFSGNSISGYISD-SLINCTNLKSLNLSYNNFDG----QIP-------KSFGELK 252
Query: 178 SLMDLDLSKNQITG-IPKSFGDMC-CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
L LDLS N++TG IP GD C L+ L++ N T +PE + C+ LQS
Sbjct: 253 LLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESL----SSCSW--LQSL 306
Query: 236 MLQNNMLSGSLPGV---------------TELDGTFPKQFCRPSSLVELDLESN------ 274
L NN +SG P + G FP SL D SN
Sbjct: 307 DLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVI 366
Query: 275 ------------QLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322
+L L N + G P + L+ +D S N ++G +P + NL +
Sbjct: 367 PPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLE 426
Query: 323 QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP 382
Q + + Y + A + I + + K + L++N L+G+IP
Sbjct: 427 Q------FIAW-----------YNNIAGEIPPEIGKLQNL-----KDLILNNNQLTGEIP 464
Query: 383 EEI------------TSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
E ++ L G++P+ F LS L V+ L NNNF+G+IP +
Sbjct: 465 PEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPEL 515
|
Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 174/429 (40%), Gaps = 120/429 (27%)
Query: 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAF-------------- 139
S+T L LS +S + +S +S SLV+LD+S+N G P +
Sbjct: 77 SITRLDLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNV 136
Query: 140 -------RNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG- 191
R + + L +L+ SLP++L + +T L LDL N G
Sbjct: 137 FEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSL-------TTLTRLEHLDLGGNYFDGE 189
Query: 192 IPKSFGDMCCLKTLKIHDNILTAKLP----------ELFL----NFSAGCAKK-----SL 232
IP+S+G LK L + N L ++P +L+L ++ G +L
Sbjct: 190 IPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINL 249
Query: 233 QSFMLQNNMLSGSLPG--------------VTELDGTFPKQFCRPSSLVELDLESN---- 274
L N L GS+P EL G+ P++ +SL LDL +N
Sbjct: 250 VHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEG 309
Query: 275 ------------QLW-LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321
QL+ L FN ++G + P LQ+L HNN +G +P+ L + +
Sbjct: 310 EIPLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNL 369
Query: 322 VQ-----NGSSNVIVE-----YRIQ---LIDDPEFDYQDRALLVWKPIDSIYKITLG--- 365
++ N + +I E R++ L ++ F L +P +++ LG
Sbjct: 370 IEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEP---LWRFRLGQNF 426
Query: 366 ----LPKS---------IDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412
LPK ++L +N L+G+IPEE +Q S L +NLSNN
Sbjct: 427 LTSKLPKGLIYLPNLSLLELQNNFLTGEIPEE---------EAGNAQFSSLTQINLSNNR 477
Query: 413 FSGKIPSSI 421
SG IP SI
Sbjct: 478 LSGPIPGSI 486
|
Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 134/326 (41%), Gaps = 73/326 (22%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
++LSNN L GP P F TS SL LN S+P + Y L
Sbjct: 102 INLSNNNLSGPIPHDIF--TTSSPSLRYLNLSNNNFSGSIPRGFLPNLYT---------L 150
Query: 183 DLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
DLS N TG I G L+ L + N+LT +P N S L+ L +N
Sbjct: 151 DLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLS------RLEFLTLASNQ 204
Query: 242 LSGSLP--------------GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSA 287
L+G +P G L G P Q SSL LDL +N+++G
Sbjct: 205 LTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDL-------VYNNLSGPI 257
Query: 288 TPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQD 347
P L L+ + N +SG +P + +L ++ S+ + I PE Q
Sbjct: 258 PPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEI-----PELVAQM 312
Query: 348 RALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPR 395
++L + + L NNL+GKIPE +TSL G IP
Sbjct: 313 QSLEI-----------------LHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPA 355
Query: 396 SFSQLSHLGVVNLSNNNFSGKIPSSI 421
+ + ++L V++LS NN +GK+P ++
Sbjct: 356 NLGKHNNLTVLDLSTNNLTGKLPDTL 381
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJM4|IKU2_ARATH Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 126/304 (41%), Gaps = 61/304 (20%)
Query: 172 AFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
N+ L +L+LS NQI+G IPK + L+ L+I+ N LT KLP F N +
Sbjct: 216 GIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLGFRNLT------ 269
Query: 231 SLQSFMLQNNMLSGSLP-----------GVTE--LDGTFPKQFCRPSSLVELDLESNQL- 276
+L++F NN L G L G+ E L G PK+F SL L L NQL
Sbjct: 270 NLRNFDASNNSLEGDLSELRFLKNLVSLGMFENRLTGEIPKEFGDFKSLAALSLYRNQLT 329
Query: 277 ---------WLRFNHIN-------GSATPKLCSSPMLQVLDFSHNNISGMVPT----CLN 316
W F +I+ G P +C ++ L N +G P C
Sbjct: 330 GKLPRRLGSWTAFKYIDVSENFLEGQIPPYMCKKGVMTHLLMLQNRFTGQFPESYAKCKT 389
Query: 317 NLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSI---DLS 373
+ V N S + ++ I + P + D L + +G KS+ DLS
Sbjct: 390 LIRLRVSNNSLSGMIPSGIWGL--PNLQFLD---LASNYFEGNLTGDIGNAKSLGSLDLS 444
Query: 374 DNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+N SG +P +I+ G +P SF +L L + L NN SG IP S+
Sbjct: 445 NNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSL 504
Query: 422 PLQT 425
L T
Sbjct: 505 GLCT 508
|
Modulates the seed size by negatively regulating the cellularization of syncytial endosperm. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| 147811986 | 1085 | hypothetical protein VITISV_012666 [Viti | 0.860 | 0.369 | 0.317 | 2e-37 | |
| 302143722 | 750 | unnamed protein product [Vitis vinifera] | 0.896 | 0.557 | 0.308 | 3e-35 | |
| 296084223 | 651 | unnamed protein product [Vitis vinifera] | 0.744 | 0.533 | 0.320 | 3e-34 | |
| 302143729 | 641 | unnamed protein product [Vitis vinifera] | 0.665 | 0.483 | 0.310 | 1e-33 | |
| 359490572 | 975 | PREDICTED: probable LRR receptor-like se | 0.665 | 0.317 | 0.310 | 2e-33 | |
| 359490562 | 1412 | PREDICTED: LRR receptor-like serine/thre | 0.690 | 0.228 | 0.311 | 3e-32 | |
| 296084228 | 523 | unnamed protein product [Vitis vinifera] | 0.742 | 0.661 | 0.302 | 7e-32 | |
| 147838406 | 700 | hypothetical protein VITISV_044461 [Viti | 0.813 | 0.541 | 0.301 | 1e-31 | |
| 359490164 | 1198 | PREDICTED: LRR receptor-like serine/thre | 0.742 | 0.288 | 0.302 | 3e-31 | |
| 359490560 | 1010 | PREDICTED: LRR receptor-like serine/thre | 0.680 | 0.313 | 0.309 | 3e-31 |
| >gi|147811986|emb|CAN77037.1| hypothetical protein VITISV_012666 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 186/585 (31%), Positives = 249/585 (42%), Gaps = 184/585 (31%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
+L +LQS+++ N + +WLSY LT L L G+DL +A W Q + SL EL
Sbjct: 141 NLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTEL 200
Query: 71 DLS-SSAPPKINYRSHSLVNSS------------------------SSSLTHLHL----- 100
LS + P I S S NSS SSSL HL L
Sbjct: 201 YLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSSSLVHLDLFGNDL 260
Query: 101 ------SLCGLSNSAYHCLS----------HISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144
+L ++N AY LS S SL +LDLS NQL G PD AF NMT+
Sbjct: 261 NGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHGSIPD-AFGNMTT 319
Query: 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-------PKSF 196
LA L S N++ G S+P A N+T+L L LS NQ+ G P
Sbjct: 320 LAYLDLSSNHLNG----SIP-------DALGNMTTLAHLYLSANQLEGTLPNLEATPSLG 368
Query: 197 GDMC--CLKT---------------------------------------LKIHDNILTAK 215
DM CLK + + +N L+ +
Sbjct: 369 MDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQSSWGLLHVDLSNNQLSGE 428
Query: 216 LPE--------LFLNFS----AGCAKKS------LQSFMLQNNMLSGSLP---------- 247
LP+ + LN + +G K S +Q+ L+NN L+G+LP
Sbjct: 429 LPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDLR 488
Query: 248 ----GVTELDGTFPKQFCRP-SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302
G +L G P S L+ ++L SN+ NGS LC +Q+LD
Sbjct: 489 LIDLGKNKLSGKMPAWIGGXLSDLIVVNLRSNEF-------NGSIPLNLCQLKKVQMLDL 541
Query: 303 SHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI 362
S NN+SG++P CLNNL+AM QNGS + E R+ + D Y D ++ WK + YK
Sbjct: 542 SSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERL-FVFDSSISYIDNTVVQWKGKELEYKK 600
Query: 363 TLGLPKSIDLSDNNLSGKIPEEITSL---------------------------------- 388
TL L KSID S+N L+G+IP E+T L
Sbjct: 601 TLXLVKSIDFSNNKLNGEIPIEVTDLVELXSLNLSXNNLIGSIPLMIGQLKSLDFXBLSQ 660
Query: 389 --LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAY 431
L G IP S SQ++ L V++LS+N SGKIPS L +F AS Y
Sbjct: 661 NQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTY 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143722|emb|CBI22583.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 191/619 (30%), Positives = 248/619 (40%), Gaps = 201/619 (32%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVV---------- 60
+L +LQS+++ N + +WLSY LT L L G+DL +A W Q +
Sbjct: 37 NLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTEL 96
Query: 61 ---ITGLP---------------SLRELDLS-----SSAPPKINYRSHSLVN-------- 89
T LP SL LDLS SS P + Y S SLV+
Sbjct: 97 YLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSSSLVHLDLFGNDL 156
Query: 90 ------------------------------SSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119
S S SL HL LS L S +++ +
Sbjct: 157 NGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHGSIPDAFGNMT-T 215
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASL-TSLNYITG-ISK-----CSLPITLV----- 167
L YLDLS+N L G PD A NMT+LA L S N + G I K C+L I L
Sbjct: 216 LAYLDLSSNHLNGSIPD-ALGNMTTLAHLYLSANQLEGEIPKSLRDLCNLQILLFLYLSE 274
Query: 168 -RPKYAF---SNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTA-------- 214
+ K +F S + L +L L NQ+ G +P+S G + L+ L I N L
Sbjct: 275 NQFKGSFPDLSGFSQLRELYLGFNQLNGTLPESIGQLAQLQGLNIRSNSLQGTVSANHLF 334
Query: 215 ---KLPELFLNFSAGCAKKSLQS-------FMLQNNMLSGSLPGVTE------------- 251
KL +L L+F+ SL+ L NN LSG LP E
Sbjct: 335 GLSKLWDLDLSFNYLTVNISLEQSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNN 394
Query: 252 -------------------------LDGTFPKQFCRPSSLVELDLESNQL------W--- 277
L G P L +DL N+L W
Sbjct: 395 NFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGG 454
Query: 278 ---------LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328
LR N NGS LC +Q+LD S NN+SG++P CLNNL+AM QNGS
Sbjct: 455 NLSDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLV 514
Query: 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388
+ E R+ + D Y D ++ WK + YK TL L KSID S+N L+G+IP E+T L
Sbjct: 515 IAYEERL-FVFDSSISYIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDL 573
Query: 389 ------------------------------------LIGKIPRSFSQLSHLGVVNLSNNN 412
L G IP S SQ++ L V++LS+N
Sbjct: 574 VELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNI 633
Query: 413 FSGKIPSSIPLQTFEASAY 431
SGKIPS L +F AS Y
Sbjct: 634 LSGKIPSGTQLHSFNASTY 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084223|emb|CBI24611.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 200/462 (43%), Gaps = 115/462 (24%)
Query: 29 KFDQWLSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSLR-----------ELDLSSSA 76
+F WL LT L L D+ + DW + + + +L L
Sbjct: 163 RFPSWLQTQKHLTELDLSNSDISDVLPDWFWNLTSNINTLNISNNQIRGVLPNLSSQFGT 222
Query: 77 PPKINYRSHSLVNSSS---SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
P I+ S+S S S++T L LS LS S + LVYLDLSNN L G
Sbjct: 223 YPDIDISSNSFEGSIPQLPSTVTRLDLSNNKLSGSISLLCIVANSYLVYLDLSNNSLTGA 282
Query: 134 TPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-I 192
P+ P++A SL+ L+L N+ +G I
Sbjct: 283 LPN------------------------------CWPQWA-----SLVVLNLENNKFSGKI 307
Query: 193 PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252
P S G + ++TL + N LT +LP N + SL+ L N LSG +P +
Sbjct: 308 PNSLGSLQLIQTLHLRSNNLTGELPSSLKNCT------SLRLIDLGKNRLSGKIP--LWI 359
Query: 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312
G+ P L LR N +GS +LC +Q+LD S N+ISG++P
Sbjct: 360 GGSLPNLTI--------------LSLRSNRFSGSICSELCQLKKIQILDLSSNDISGVIP 405
Query: 313 TCLNNLSAMVQNGSSNVIVEYRIQ--LIDDP-EFD---YQDRALLVWKPIDSIYKITLGL 366
CLNN +AM + GS V Y DP +F Y D AL+ WK + YK TLGL
Sbjct: 406 RCLNNFTAMTKKGSLVVAHNYSFGSFAYKDPLKFKNESYVDEALIKWKGSEFEYKNTLGL 465
Query: 367 PKSIDLSDNNLSGKIPEEITSL------------------------------------LI 390
+SIDLS NNL G+IP+EIT L L
Sbjct: 466 IRSIDLSRNNLLGEIPKEITDLLELVSLNLSRNNLTGLIPTTIGQLKSLEILDLSQNELF 525
Query: 391 GKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
G+IP S S++S L V++LSNNN SGKIP LQ+F + +YK
Sbjct: 526 GEIPTSLSEISLLSVLDLSNNNLSGKIPKGTQLQSFNSYSYK 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143729|emb|CBI22590.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 188/412 (45%), Gaps = 102/412 (24%)
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGI 157
L +S G+S+ + + + +L L++SNNQ+ G P+ + S NY G
Sbjct: 178 LDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQMDMSSNYFEG- 236
Query: 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKT-----LKIHDNIL 212
S+P+ + + LDLSKN +G S +C + L + +N+L
Sbjct: 237 ---SIPVFIFYAGW----------LDLSKNMFSG---SISSLCAVSRGASAYLDLSNNLL 280
Query: 213 TAKLPELFL-------------NFSAGCAK-----KSLQSFMLQNNMLSGSLP------- 247
+ +LP + NFS ++++S L+NN L+G LP
Sbjct: 281 SGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCT 340
Query: 248 -------GVTELDGTFPKQFCRP-SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
G +L G P R +LV L+L RFN GS +C +Q+
Sbjct: 341 KLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNL-------RFNEFYGSIPMDMCQLKKIQI 393
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI---QLIDDPEFDYQDRALLVWKPI 356
LD S+NNISGM+P C NN +AMVQ GS + Y I + + P Y D+ ++ WK
Sbjct: 394 LDLSNNNISGMIPRCFNNFTAMVQQGSLVITYNYTIPCFKPLSRPS-SYVDKQMVQWKGR 452
Query: 357 DSIYKITLGLPKSIDLSDNNLSGKIPEEITSL---------------------------- 388
+ Y+ TLGL KSIDLS N LSG+IP E+T+L
Sbjct: 453 ELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMD 512
Query: 389 --------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
L GKIP + SQ+ L V++LS+N+F GKIPS LQ+F +S Y+
Sbjct: 513 ALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYE 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 188/412 (45%), Gaps = 102/412 (24%)
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGI 157
L +S G+S+ + + + +L L++SNNQ+ G P+ + S NY G
Sbjct: 512 LDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQMDMSSNYFEG- 570
Query: 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKT-----LKIHDNIL 212
S+P+ + + LDLSKN +G S +C + L + +N+L
Sbjct: 571 ---SIPVFIFYAGW----------LDLSKNMFSG---SISSLCAVSRGASAYLDLSNNLL 614
Query: 213 TAKLPELFL-------------NFSAGCAK-----KSLQSFMLQNNMLSGSLP------- 247
+ +LP + NFS ++++S L+NN L+G LP
Sbjct: 615 SGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCT 674
Query: 248 -------GVTELDGTFPKQFCRP-SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
G +L G P R +LV L+L RFN GS +C +Q+
Sbjct: 675 KLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNL-------RFNEFYGSIPMDMCQLKKIQI 727
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI---QLIDDPEFDYQDRALLVWKPI 356
LD S+NNISGM+P C NN +AMVQ GS + Y I + + P Y D+ ++ WK
Sbjct: 728 LDLSNNNISGMIPRCFNNFTAMVQQGSLVITYNYTIPCFKPLSRPS-SYVDKQMVQWKGR 786
Query: 357 DSIYKITLGLPKSIDLSDNNLSGKIPEEITSL---------------------------- 388
+ Y+ TLGL KSIDLS N LSG+IP E+T+L
Sbjct: 787 ELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMD 846
Query: 389 --------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
L GKIP + SQ+ L V++LS+N+F GKIPS LQ+F +S Y+
Sbjct: 847 ALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYE 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490562|ref|XP_003634112.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 187/411 (45%), Gaps = 89/411 (21%)
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS 150
+ L L +S G+S+ + +++ L +L++SNN + G P+ + S
Sbjct: 854 TQKGLLDLDISASGISDVIPNWFWNLTSHLAWLNISNNHISGTLPNL------QVTSYLR 907
Query: 151 LNYITGISKCSLPIT------LVRPKYAFSNVTSLM------------DLDLSKNQITG- 191
++ + + S+P + LV K FS SL LDLS N+++G
Sbjct: 908 MDMSSNCLEGSIPQSVFNAGWLVLSKNLFSGSISLSCRTTNQSSRGLSHLDLSNNRLSGE 967
Query: 192 IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP---- 247
+P +G L L + +N + K+ S G + +Q+ L+NN L G+LP
Sbjct: 968 LPNCWGQWKDLIVLNLANNNFSGKIKN-----SVGLLHQ-IQTLHLRNNSLIGALPLSLK 1021
Query: 248 ----------GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPML 297
G +L G P SSL+ L+L SN+ NG+ LC +
Sbjct: 1022 NCKDLHLVDFGRNKLSGNVPAWMGSLSSLIVLNLRSNEF-------NGNIPLNLCQLKKI 1074
Query: 298 QVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPID 357
Q+LD S NN+ G +P CLN+L A+ Q GS VI Q +F Y D L+ WK +
Sbjct: 1075 QMLDLSSNNLFGTIPKCLNDLIALTQKGSL-VIAYNERQFHSGWDFSYIDDTLIQWKGKE 1133
Query: 358 SIYKITLGLPKSIDLSDNNLSGKIPEEITSL----------------------------- 388
YK TLGL +SID S+N L G+IP E+T L
Sbjct: 1134 LEYKKTLGLIRSIDFSNNKLIGEIPVEVTDLVELVSLNLSRNNLTGSIPSMIGQLKSLDF 1193
Query: 389 -------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
L G+IP S SQ++ L V++LSNNN SGKIPS LQ+F AS Y+
Sbjct: 1194 LDLSQNQLHGRIPASLSQIADLSVLDLSNNNLSGKIPSGTQLQSFSASTYQ 1244
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084228|emb|CBI24616.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 202/463 (43%), Gaps = 117/463 (25%)
Query: 30 FDQWLSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSL-----------RELDLSSSAP 77
F WL N L L + ++ + DW V + + +L + L L+ +
Sbjct: 25 FPSWLRTQNLLIELDISNSEISDVLPDWFWNVTSTISTLSISNNRIKGTLQNLPLNFGSL 84
Query: 78 PKINYRSH---SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPT 134
I+ S+ L+ S + L LS LS S + ++ LV LDLSNN L G
Sbjct: 85 SNIDMSSNYFEGLIPQLPSDVRWLDLSNNKLSGSISLLCAVVNPPLVLLDLSNNSLTGGL 144
Query: 135 PDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IP 193
P+ ++ L+ L+L N+ +G IP
Sbjct: 145 PN-----------------------------------CWAQWERLVVLNLENNRFSGQIP 169
Query: 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253
SFG + ++TL + +N LT +LP F N C K L+ L N LSG +P +
Sbjct: 170 NSFGSLRSIRTLHLRNNNLTGELPLSFKN----CTK--LRFIDLGKNRLSGKIP--EWIG 221
Query: 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT 313
G+ P +L+ L+L SN RF+ G P+LC +Q+LD S+NNI G+VP
Sbjct: 222 GSLP-------NLIVLNLGSN----RFS---GVICPELCQLKNIQILDLSNNNILGVVPR 267
Query: 314 CLNNLSAMVQNGSSNVIVEYRI----QLIDDP----EFDYQDRALLVWKPIDSIYKITLG 365
C+ +AM + GS + Y + DD Y DRA++ WK + +K TLG
Sbjct: 268 CVGGFTAMTKKGSLVIAYNYSFTQNGRCRDDGCMPINASYVDRAMVRWKEREFDFKSTLG 327
Query: 366 LPKSIDLSDNNLSGKIPEEITSL------------------------------------L 389
L KSIDLS N LSG+IPEE+ L L
Sbjct: 328 LVKSIDLSSNKLSGEIPEEVIDLIELVSLNLSRNNLTRLIPTRIGQLKSLEVLDLSQNQL 387
Query: 390 IGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
G+IP S ++S L V++LS+NN SGKIP LQ+F +YK
Sbjct: 388 FGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYK 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838406|emb|CAN72124.1| hypothetical protein VITISV_044461 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 221/478 (46%), Gaps = 99/478 (20%)
Query: 8 FHISLE---DLQSINIGLNAIRVR-KFDQWLSYHNKLTSLSLQGLDLREA-TDWLQVVIT 62
F++SL+ Q +++GL + ++ +F WL N+L+ L + ++ + DW V +
Sbjct: 186 FNMSLDWVPPFQLLSLGLASGKLGPRFPSWLRTQNQLSELDISNSEISDVLPDWFWNVTS 245
Query: 63 GLPSLRELDLSSSAPPKINYRSHSLVNSSS--SSLTHLHLSLCGLSNSAYHCLSHISKSL 120
++ L +S+ N +L N SS +++ +S SN + + +
Sbjct: 246 ---TVNTLSISN------NRIKGTLPNLSSKFGRFSYIDMS----SNCFEGSIPQLPYDV 292
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLM 180
+LDLSNN+L G S++ L ++ Y + S ++ SL+
Sbjct: 293 RWLDLSNNKLSG-----------SISLLCTVGYQLLLLDLSNNSLSGGLPNCWAQWESLV 341
Query: 181 DLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
L+L N+ +G IP SFG + ++TL + +N LT +LP F N + SL L
Sbjct: 342 VLNLENNRFSGQIPNSFGSLQSIQTLHLRNNNLTGELPLSFKNCT------SLSFIDLAK 395
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
N LSG +P + G+ P +L+ L+L SN RF+ G +LC +Q+
Sbjct: 396 NRLSGKIP--EWIGGSLP-------NLIVLNLGSN----RFS---GVICLELCQLKNIQI 439
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEF---------DYQDRAL 350
LD S NNI G+VP C+ + +AM + GS + Y ID + Y DR L
Sbjct: 440 LDLSSNNILGIVPRCVGSFTAMTKKGSLVIAHNYSFPKIDSCRYGGRCSSMNASYVDREL 499
Query: 351 LVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL---------------------- 388
+ WK + +K TLGL KSIDLS N LSG IPEEI L
Sbjct: 500 VKWKTREFDFKSTLGLVKSIDLSSNKLSGDIPEEIIDLVELVSLNLSRNNLTRLIPARIG 559
Query: 389 --------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
L G+IP S ++S L V++LS+NN SGKIP LQ+F +YK
Sbjct: 560 QLKSFEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYK 617
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490164|ref|XP_002268910.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 202/463 (43%), Gaps = 117/463 (25%)
Query: 30 FDQWLSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSL-----------RELDLSSSAP 77
F WL N L L + ++ + DW V + + +L + L L+ +
Sbjct: 695 FPSWLRTQNLLIELDISNSEISDVLPDWFWNVTSTISTLSISNNRIKGTLQNLPLNFGSL 754
Query: 78 PKINYRSH---SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPT 134
I+ S+ L+ S + L LS LS S + ++ LV LDLSNN L G
Sbjct: 755 SNIDMSSNYFEGLIPQLPSDVRWLDLSNNKLSGSISLLCAVVNPPLVLLDLSNNSLTGGL 814
Query: 135 PDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IP 193
P+ ++ L+ L+L N+ +G IP
Sbjct: 815 PN-----------------------------------CWAQWERLVVLNLENNRFSGQIP 839
Query: 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253
SFG + ++TL + +N LT +LP F N C K L+ L N LSG +P +
Sbjct: 840 NSFGSLRSIRTLHLRNNNLTGELPLSFKN----CTK--LRFIDLGKNRLSGKIP--EWIG 891
Query: 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT 313
G+ P +L+ L+L SN RF+ G P+LC +Q+LD S+NNI G+VP
Sbjct: 892 GSLP-------NLIVLNLGSN----RFS---GVICPELCQLKNIQILDLSNNNILGVVPR 937
Query: 314 CLNNLSAMVQNGSSNVIVEYRI----QLIDDP----EFDYQDRALLVWKPIDSIYKITLG 365
C+ +AM + GS + Y + DD Y DRA++ WK + +K TLG
Sbjct: 938 CVGGFTAMTKKGSLVIAYNYSFTQNGRCRDDGCMPINASYVDRAMVRWKEREFDFKSTLG 997
Query: 366 LPKSIDLSDNNLSGKIPEEITSL------------------------------------L 389
L KSIDLS N LSG+IPEE+ L L
Sbjct: 998 LVKSIDLSSNKLSGEIPEEVIDLIELVSLNLSRNNLTRLIPTRIGQLKSLEVLDLSQNQL 1057
Query: 390 IGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYK 432
G+IP S ++S L V++LS+NN SGKIP LQ+F +YK
Sbjct: 1058 FGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYK 1100
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 191/407 (46%), Gaps = 90/407 (22%)
Query: 95 LTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYI 154
L L +S G+S+ + +++ +LV+L++SNN + G P N+ + SL ++
Sbjct: 526 LQELDISASGISDVIPNWFWNLTSNLVWLNISNNHISGTLP-----NLEATPSL-GMDMS 579
Query: 155 TGISKCSLPITLVRPKY------AFSNVTSL------------MDLDLSKNQITG-IPKS 195
+ K S+P ++ ++ FS SL + +DLS NQ++G +PK
Sbjct: 580 SNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQSSWGLLHVDLSNNQLSGELPKC 639
Query: 196 FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP-------- 247
+ L L + +N + + S G + +Q+ L+NN L+G+LP
Sbjct: 640 WEQWKYLIVLNLTNNNFSGTIKN-----SIGMLHQ-MQTLHLRNNSLTGALPLSLKNCRD 693
Query: 248 ------GVTELDGTFPKQFC-RPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVL 300
G +L G P S L+ ++L SN+ NGS LC +Q+L
Sbjct: 694 LRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEF-------NGSIPLNLCQLKKVQML 746
Query: 301 DFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
D S NN+SG++P CLNNL+AM QNGS + E R+ + D Y D ++ WK + Y
Sbjct: 747 DLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERL-FVFDSSISYIDNTVVQWKGKELEY 805
Query: 361 KITLGLPKSIDLSDNNLSGKIPEEITSL-------------------------------- 388
K TL L KSID S+N L+G+IP E+T L
Sbjct: 806 KKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDL 865
Query: 389 ----LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAY 431
L G IP S SQ++ L V++LS+N SGKIPS L +F AS Y
Sbjct: 866 SQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTY 912
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| TAIR|locus:2044767 | 905 | AT2G34930 "AT2G34930" [Arabido | 0.611 | 0.314 | 0.293 | 5.3e-17 | |
| TAIR|locus:2205005 | 1019 | RLP7 "AT1G47890" [Arabidopsis | 0.615 | 0.281 | 0.297 | 2e-16 | |
| TAIR|locus:2098267 | 836 | IMK2 "inflorescence meristem r | 0.583 | 0.325 | 0.313 | 2.3e-15 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.489 | 0.210 | 0.304 | 2.5e-09 | |
| TAIR|locus:4515102753 | 598 | AT1G73066 [Arabidopsis thalian | 0.600 | 0.468 | 0.303 | 6e-15 | |
| TAIR|locus:2041150 | 1143 | BRL2 "BRI1-like 2" [Arabidopsi | 0.590 | 0.240 | 0.286 | 2.1e-12 | |
| TAIR|locus:2180587 | 811 | RLP52 "receptor like protein 5 | 0.635 | 0.364 | 0.272 | 2.1e-10 | |
| TAIR|locus:2137296 | 811 | RLP46 "receptor like protein 4 | 0.579 | 0.332 | 0.314 | 3.7e-14 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.592 | 0.273 | 0.292 | 6.6e-14 | |
| TAIR|locus:2005540 | 999 | HAE "HAESA" [Arabidopsis thali | 0.605 | 0.282 | 0.301 | 1.1e-13 |
| TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 102/348 (29%), Positives = 163/348 (46%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPK--YAFSN----- 175
+DLS+N +G P ++ N T L L N+ +G ++ + + R + Y FSN
Sbjct: 550 IDLSSNNFEGTFPLWS-TNATELR-LYENNF-SGSLPQNIDVLMPRMEKIYLFSNSFTGN 606
Query: 176 -------VTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGC 227
V+ L L L KN +G PK + L + + +N L+ ++PE S G
Sbjct: 607 IPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPE-----SLGM 661
Query: 228 AKKSLQSFMLQNNMLSGSLP-------GVTELD-------GTFPKQFCRPSSLVELDLES 273
SL +L N L G +P G+T +D G P + SSL L L+S
Sbjct: 662 LP-SLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQS 720
Query: 274 NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEY 333
N G LC+ P L++LD S N ISG +P C++NL+A+ + G++N + +
Sbjct: 721 NSF-------TGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIAR-GTNNEVFQN 772
Query: 334 RIQLIDDP-EFDYQDRAL-LVWKPIDS-IYKITLGLP--KSIDLSDNNLSGKIPEEITSL 388
+ ++ E++ ++ L I I + LGL + ++LS N+++G IPE+I+ L
Sbjct: 773 LVFIVTRAREYEAIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISEL 832
Query: 389 ------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQ 424
G IP+SF+ +S L +NLS N G IP + Q
Sbjct: 833 SRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ 880
|
|
| TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 100/336 (29%), Positives = 154/336 (45%)
Query: 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNV 176
SKSL Y SNN G P R++ L+SL L+ SLP L + +
Sbjct: 610 SKSLRYFSGSNNNFTGKIP----RSICGLSSLEILDLSNNNLNGSLPWCLE------TLM 659
Query: 177 TSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
+SL DLDL N ++G +P+ F + L++L + N + KLP GC+ SL+
Sbjct: 660 SSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSL----TGCS--SLEVL 713
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP 295
+ +N ++ P EL+ L L L SN+ ++++G P
Sbjct: 714 NVGSNRINDMFP--FELNSL--------QKLQVLVLHSNKFHGTLHNVDGV----WFGFP 759
Query: 296 MLQVLDFSHNNISGMVPT-CLNNLSAMVQNGSSNVIVEYRIQ--LIDDPEFDYQDRALLV 352
LQ++D SHN+ G++P+ N +AM +N+ EY IQ + Y +L+
Sbjct: 760 QLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEY-IQNPSVYGSSLGYYTSLVLM 818
Query: 353 WKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQL 400
K + + L + +IDLS N L GKIP+ I L G IP S + L
Sbjct: 819 SKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANL 878
Query: 401 SHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTH 436
+L +++S NN SG+IP L T + A+ N +H
Sbjct: 879 KNLESLDISQNNISGEIPPE--LGTLSSLAWINVSH 912
|
|
| TAIR|locus:2098267 IMK2 "inflorescence meristem receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 105/335 (31%), Positives = 154/335 (45%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178
SL L L NN + G P R++ L SL + S+P++L N
Sbjct: 119 SLRKLSLHNNVIAGSVP----RSLGYLKSLRGVYLFNNRLSGSIPVSL-------GNCPL 167
Query: 179 LMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM- 236
L +LDLS NQ+TG IP S + L L + N L+ LP A+ +F+
Sbjct: 168 LQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLP-------VSVARSYTLTFLD 220
Query: 237 LQNNMLSGSLPG----------VTELD-----GTFPKQFCRPSSLVELDLESNQLWLRFN 281
LQ+N LSGS+P LD G P C+ S L E+ + NQL
Sbjct: 221 LQHNNLSGSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQL----- 275
Query: 282 HINGSATPKLCSS-PMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLID 339
+GS P+ C P LQ LDFS+N+I+G +P +NLS++V N SN + ID
Sbjct: 276 --SGSI-PRECGGLPHLQSLDFSYNSINGTIPDSFSNLSSLVSLNLESNHLKGPIPDAID 332
Query: 340 DPE--FDYQDRALLVWKPI-DSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS 396
+ + + PI ++I I+ G+ K +DLS+NN +G IP SL+
Sbjct: 333 RLHNLTELNLKRNKINGPIPETIGNIS-GI-KKLDLSENNFTGPIP---LSLV------- 380
Query: 397 FSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAY 431
L+ L N+S N SG +P + + F +S++
Sbjct: 381 --HLAKLSSFNVSYNTLSGPVPPVLS-KKFNSSSF 412
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 88/289 (30%), Positives = 134/289 (46%)
Query: 178 SLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
+L ++ S N G IP S G+M L+ L + N L +LP +FL+ L +
Sbjct: 554 NLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQ 613
Query: 237 LQNNMLS--GSLPGVTEL--DG-----TFPKQFCRPSSLVELDLESNQ------LW---- 277
LQ + S +L G+ L DG + + + +L LD+ N+ LW
Sbjct: 614 LQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRI 673
Query: 278 --LRFNHINGSAT----PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331
L + +++G+ P L SP ++V+D SHN+ SG +P +N S +
Sbjct: 674 SRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHNSFSGSIPRNVNFPS----------LR 723
Query: 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI--TS-- 387
E R+Q + EF LV P +++K GL + +DL +NN SGKI I TS
Sbjct: 724 ELRLQ---NNEFTG-----LV--P-GNLFKAA-GL-EVLDLRNNNFSGKILNTIDQTSKL 770
Query: 388 --LLIGK------IPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEA 428
LL+ IP QLS +G+++LS+N F G IPS +F A
Sbjct: 771 RILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGA 819
|
|
| TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 103/339 (30%), Positives = 153/339 (45%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-NYITG-ISKCSLPITLVRPKYA-FSN 175
SLVY+DLS N G PD ++ SLA L N +TG + K I ++ + +N
Sbjct: 122 SLVYIDLSENSFSGKVPD-TLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVEHNN 180
Query: 176 VTSL-----------MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNF 223
+T L + L L NQ TG IP+S G+ L+ L +H N L LP LN
Sbjct: 181 LTGLIPQNVGEAKELLHLRLFDNQFTGTIPESIGNCSKLEILYLHKNKLVGSLPAS-LNL 239
Query: 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHI 283
+SL + NN L G++ F CR +LV LDL +N
Sbjct: 240 L-----ESLTDLFVANNSLRGTVQ--------FGSTKCR--NLVTLDLS-------YNEF 277
Query: 284 NGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM-VQNGSSNVIV-EYRIQLIDDP 341
G P+L + L L N+SG +P+ L L + + N S N + +L +
Sbjct: 278 EGGVPPELGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCS 337
Query: 342 EFDY---QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI------TSLLI-- 390
+ D L+ P ++ K L +S++L +N SG+IP EI T LL+
Sbjct: 338 SLNLLKLNDNQLVGGIP-SALGK--LRKLESLELFENRFSGEIPIEIWKIQSLTQLLVYR 394
Query: 391 ----GKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQT 425
GK+P ++L +L +V L NN+F G IP ++ L +
Sbjct: 395 NNLTGKLPEEITKLKNLKIVTLFNNSFYGVIPPNLGLNS 433
|
|
| TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 97/339 (28%), Positives = 146/339 (43%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG-ISKC--------SLPITLVR 168
S+ YLD S N + G D + N T+L SL S N G I K SL ++ R
Sbjct: 205 SMTYLDFSGNSISGYISD-SLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNR 263
Query: 169 -----PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222
P SL +L LS N TG IP+S L++L + +N ++ P L
Sbjct: 264 LTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILR 323
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLP-GVTELDGTFPKQFC--RPSSLVELDL-----ESN 274
S G SLQ +L NN++SG P ++ F R S ++ DL
Sbjct: 324 -SFG----SLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLE 378
Query: 275 QLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYR 334
+L L N + G P + L+ +D S N ++G +P + NL + Q + +
Sbjct: 379 ELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQ------FIAW- 431
Query: 335 IQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI--------- 385
Y + A + I + + K + L++N L+G+IP E
Sbjct: 432 ----------YNNIAGEIPPEIGKLQNL-----KDLILNNNQLTGEIPPEFFNCSNIEWV 476
Query: 386 --TS-LLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
TS L G++P+ F LS L V+ L NNNF+G+IP +
Sbjct: 477 SFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPEL 515
|
|
| TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 98/360 (27%), Positives = 146/360 (40%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITG-----ISKCSLPITLV 167
+ ISK L ++S NQL G P+ + + N +TG + C +++
Sbjct: 350 IGFISK-LERFEVSENQLTGKLPENLCHGGKLQSVIVYSNNLTGEIPESLGDCETLSSVL 408
Query: 168 RPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAG 226
FS ++ + S N TG IP ++ L L + N +P N S
Sbjct: 409 LQNNGFSGSVTISNNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLS-- 466
Query: 227 CAKKSLQSFMLQNNMLSGSLP------------GVTELDGTFPKQFCRPSSLVELDLESN 274
+L+ L N LSGS+P G +L G P+ R SSL L++ESN
Sbjct: 467 ----TLEVLNLGKNHLSGSIPENISTSVKSIDIGHNQLAGKLPRSLVRISSLEVLNVESN 522
Query: 275 QL------WL-----------RFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT-CLN 316
++ WL R N +GS S L+++D S N+ +G +P
Sbjct: 523 KINDTFPFWLDSMQQLQVLVLRSNAFHGSINQNGFSK--LRIIDISGNHFNGTLPLDFFV 580
Query: 317 NLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNN 376
N +AM G + +Y + Y D +++ K I L +ID S N
Sbjct: 581 NWTAMFSLGK--IEDQYMGTNYMRTNY-YSDSIVVMIKGIALEMVRILNTFTTIDFSGNK 637
Query: 377 LSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS----IPLQTFEASAYK 432
G+IP RS L L V+NLSNN F+G IPSS I L++ + S K
Sbjct: 638 FEGEIP------------RSVGLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNK 685
|
|
| TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 101/321 (31%), Positives = 140/321 (43%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178
SL YL LS N G PD + + L+ N+ +G S+P ++ + +
Sbjct: 397 SLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNF-SG----SVPKSITK-------IPF 444
Query: 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
L LDLSKN+++G F L+ L I N + +P F G L S Q
Sbjct: 445 LKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYF----GGSTSMLLMS---Q 497
Query: 239 NNMLSGSLPG-------VTELDGTFPKQFCRPSSLV-ELDLESNQLWLRFNHINGSATPK 290
NN SG P + LD K +SL+ +L L LR N + GS
Sbjct: 498 NNF-SGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEG 556
Query: 291 LCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG--SSNVIVEYRIQLIDDP------E 342
+ + L+VLD S NN+ G +P+ L NL+ M+++ S+ I Y D P E
Sbjct: 557 ISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIE 616
Query: 343 FDYQDRALLV--WKPIDSI-YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQ 399
+ +D LV WK + + L +DLS N L G+IP TSL
Sbjct: 617 IESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIP---TSL---------GN 664
Query: 400 LSHLGVVNLSNNNFSGKIPSS 420
L L V+NLSNN FSG IP S
Sbjct: 665 LKSLKVLNLSNNEFSGLIPQS 685
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 92/315 (29%), Positives = 151/315 (47%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVT 177
++L YL+L+NN L G Y+F ++ L +LT+ +++ G+S + P + T
Sbjct: 307 ENLHYLELANNSL-G---SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMST 362
Query: 178 SLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
L L+L N I G IP G++ L++L + DN+LT LP N G L +
Sbjct: 363 ELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNL-VG-----LGELI 416
Query: 237 LQNNMLSGSLPG----VTELDGTF--PKQF--CRPSSLVELDLESNQLWLRFNHINGSAT 288
L +N SG +P +T+L + F P SL + L + +N +NG+
Sbjct: 417 LFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCS-HMLDLQIGYNKLNGTIP 475
Query: 289 PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQN--GSSNVI--VEYRIQLIDDPEFD 344
++ P L L+ N++SG +P + L +V+ G++N+ + + E
Sbjct: 476 KEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVI 535
Query: 345 YQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLG 404
Y I I K +G+ K++DLS+NNLSG I E +FS+L +L
Sbjct: 536 YLQENHFDGT-IPDI-KGLMGV-KNVDLSNNNLSGSISEYF---------ENFSKLEYL- 582
Query: 405 VVNLSNNNFSGKIPS 419
NLS+NNF G++P+
Sbjct: 583 --NLSDNNFEGRVPT 595
|
|
| TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 101/335 (30%), Positives = 147/335 (43%)
Query: 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNV 176
+ ++V +DLS+ L GP P + L SL SL+ SL F
Sbjct: 64 TSNVVSVDLSSFMLVGPFPSI----LCHLPSLHSLSLYNNSINGSLSAD------DFDTC 113
Query: 177 TSLMDLDLSKNQITG-IPKSFG-DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234
+L+ LDLS+N + G IPKS ++ LK L+I N L+ +P F F + L+S
Sbjct: 114 HNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEF------RKLES 167
Query: 235 FMLQNNMLSGSLPG----VTELD------GTF-PKQFCRPSSLVELDLESNQLWLRFNHI 283
L N LSG++P VT L F P Q PS L L E LWL ++
Sbjct: 168 LNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSPSQI--PSQLGNLT-ELQVLWLAGCNL 224
Query: 284 NGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-----NGSSNVIVEYRIQLI 338
G P L L LD + N ++G +P+ + L + Q N S + E +
Sbjct: 225 VGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELFNNSFSGELPESMGNMT 284
Query: 339 DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEIT------------ 386
FD L P D++ + L +S++L +N L G +PE IT
Sbjct: 285 TLKRFDASMNKLTGKIP-DNLNLLNL---ESLNLFENMLEGPLPESITRSKTLSELKLFN 340
Query: 387 SLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+ L G +P S L V+LS N FSG+IP+++
Sbjct: 341 NRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANV 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-22 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-17 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| pfam13306 | 128 | pfam13306, LRR_5, Leucine rich repeats (6 copies) | 3e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.002 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 97/318 (30%), Positives = 138/318 (43%), Gaps = 82/318 (25%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG-ISKCSLPITLVRPKYAFSNVTSLM 180
++LSNNQL GP PD F +SL L S N TG I + S+P +L
Sbjct: 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP--------------NLE 143
Query: 181 DLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
LDLS N ++G IP G LK L + N+L K+P N + SL+ L +
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEFLTLAS 197
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW--LRFNHINGSATPKLCSSPML 297
N L G +P EL + W L +N+++G ++ L
Sbjct: 198 NQLVGQIP-------------------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238
Query: 298 QVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPID 357
LD +NN++G +P+ L NL + +Y F YQ+ K
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNL----------QYL--------FLYQN------KLSG 274
Query: 358 SIYKITLGLPK--SIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHL 403
I L K S+DLSDN+LSG+IPE + L GKIP + + L L
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334
Query: 404 GVVNLSNNNFSGKIPSSI 421
V+ L +N FSG+IP ++
Sbjct: 335 QVLQLWSNKFSGEIPKNL 352
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 6e-17
Identities = 113/401 (28%), Positives = 164/401 (40%), Gaps = 99/401 (24%)
Query: 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL 151
+SL HL L L+ L ++ L YL L N+L GP P F ++ L SL S
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKN-LQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293
Query: 152 NYITG-ISKCSLPITLVRPKYAFSN---------VTSL---MDLDLSKNQITG-IPKSFG 197
N ++G I + + + + + FSN +TSL L L N+ +G IPK+ G
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353
Query: 198 DMCCLKTLKIHDNILTAKLPE------------LFLNFSAG------CAKKSLQSFMLQN 239
L L + N LT ++PE LF N G A +SL+ LQ+
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL--------W---------LRFNH 282
N SG LP +F + + LD+ +N L W L N
Sbjct: 414 NSFSGELP----------SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 283 INGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDP 341
G P S L+ LD S N SG VP L +LS ++Q S N + + P
Sbjct: 464 FFGG-LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG------EIP 516
Query: 342 EFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------L 389
+ + S K+ S+DLS N LSG+IP + + L
Sbjct: 517 D------------ELSSCKKLV-----SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Query: 390 IGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASA 430
G+IP++ + L VN+S+N+ G +PS+ ASA
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 7e-16
Identities = 115/439 (26%), Positives = 177/439 (40%), Gaps = 92/439 (20%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-----PPKINYRSHSLV---- 88
+++ S+ L G + + + I LP ++ ++LS++ P I S SL
Sbjct: 69 SRVVSIDLSG---KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 89 ----------NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYA 138
S +L L LS LS + + S SL LDL N L G P+
Sbjct: 126 SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNS- 183
Query: 139 FRNMTSLASLT-SLNYITGISKCSLPITLVRPK-----------------YAFSNVTSLM 180
N+TSL LT + N + G +P L + K Y +TSL
Sbjct: 184 LTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239
Query: 181 DLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
LDL N +TG IP S G++ L+ L ++ N L+ +P + + L S L +
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL------QKLISLDLSD 293
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
N LSG +P + L L++ L L N+ G L S P LQV
Sbjct: 294 NSLSGEIPELV-------------IQLQNLEI----LHLFSNNFTGKIPVALTSLPRLQV 336
Query: 300 LDFSHNNISGMVPTCL---NNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPI 356
L N SG +P L NNL+ + ++N+ E L + +L +
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVL-DLSTNNLTGEIPEGLCSSGNLF---KLILFSNSL 392
Query: 357 DSIYKITLGLPKS---IDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLS 401
+ +LG +S + L DN+ SG++P E T L L G+I +
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452
Query: 402 HLGVVNLSNNNFSGKIPSS 420
L +++L+ N F G +P S
Sbjct: 453 SLQMLSLARNKFFGGLPDS 471
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
L L N L+G P+ +++ L L S+N + ++P + ++TSL L
Sbjct: 423 LGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPS-------LGSITSLEVL 471
Query: 183 DLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLP 217
DLS N G IP+S G + L+ L ++ N L+ ++P
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 73/325 (22%), Positives = 104/325 (32%), Gaps = 81/325 (24%)
Query: 11 SLEDLQSINI---GLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPS- 66
L LQ + + L + L L L L + LQ ++ GL
Sbjct: 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80
Query: 67 --LRELDLSSSAPPKINYRSHSLVN-SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVY- 122
L+ELDLS +A L + SSSL L L+ GL + L ++K L
Sbjct: 81 CGLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRG---LRLLAKGLKDL 135
Query: 123 ------LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNV 176
L L N+L+G + +LA A
Sbjct: 136 PPALEKLVLGRNRLEG-------ASCEALAK------------------------ALRAN 164
Query: 177 TSLMDLDLSKNQIT--GIP---KSFGDMCCLKTLKIHDNILT----AKLPELFLNFSAGC 227
L +L+L+ N I GI + C L+ L +++N LT + L E +
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS----- 219
Query: 228 AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSA 287
KSL+ L +N L + G L SL+ L L N I
Sbjct: 220 -LKSLEVLNLGDNNL--TDAGAAALASALLSPNI---SLLT-------LSLSCNDITDDG 266
Query: 288 TPKLC----SSPMLQVLDFSHNNIS 308
L L LD N
Sbjct: 267 AKDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 12/66 (18%)
Query: 368 KSIDLSDNNLSGKIPEE---ITSLLI---------GKIPRSFSQLSHLGVVNLSNNNFSG 415
+SI+LS N++ G IP ITSL + G IP S QL+ L ++NL+ N+ SG
Sbjct: 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504
Query: 416 KIPSSI 421
++P+++
Sbjct: 505 RVPAAL 510
|
Length = 623 |
| >gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies) | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 136 DYAFRNMTSLASLT---SLNYI--------TGISKCSLPITLVR-PKYAFSNVTSLMDLD 183
+YAF TSL S+T SL I + ++ ++P +L +YAFSN +SL +
Sbjct: 27 EYAFSGCTSLKSITLPSSLTSIGSYAFYNCSSLTSITIPSSLTSIGEYAFSNCSSLTSIT 86
Query: 184 LSKNQITGIPKSFGDMCCLKTLKIHDNI 211
+ N +T I C LK++ I ++
Sbjct: 87 IPSN-LTTIGSYAFSNCSLKSITIPSSV 113
|
This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 368 KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
SIDLS N+SGKI + +L ++ +NLSNN SG IP I
Sbjct: 72 VSIDLSGKNISGKISS------------AIFRLPYIQTINLSNNQLSGPIPDDI 113
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 174 SNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232
S + L ++LS N I G IP S G + L+ L + N +PE S G SL
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-----SLG-QLTSL 492
Query: 233 QSFMLQNNMLSGSLPG 248
+ L N LSG +P
Sbjct: 493 RILNLNGNSLSGRVPA 508
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.98 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.85 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.79 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.61 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.39 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.33 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.24 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.2 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.2 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.18 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.15 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.14 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.03 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.96 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.91 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.9 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.8 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.75 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.68 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.67 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.64 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.59 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.54 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.51 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.31 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.16 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.09 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.07 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.07 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.05 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.96 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.92 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.84 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.81 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.78 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.63 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.57 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.37 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.34 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.21 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.13 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.71 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.59 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.33 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.16 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.37 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.19 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.91 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.79 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.02 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.12 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.12 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 92.1 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.33 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.33 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.92 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.75 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.03 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 87.54 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 86.91 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 84.24 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 83.51 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 80.32 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=346.87 Aligned_cols=395 Identities=27% Similarity=0.338 Sum_probs=237.3
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+.+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+.. +..+.. +++|++|++++|.+.+..+ ..+..
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~p--~~l~~ 210 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKI--PNSLTN-LTSLEFLTLASNQLVGQIP--RELGQ 210 (968)
T ss_pred cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccC--Chhhhh-CcCCCeeeccCCCCcCcCC--hHHcC
Confidence 456777777777777776666 66777777777777777765442 445555 7777777777777766555 45556
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|. .++++++|+.|+ +.|.+.+. +|
T Consensus 211 --l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~----~p----- 277 (968)
T PLN00113 211 --MKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGP----IP----- 277 (968)
T ss_pred --cCCccEEECcCCccCCcCChhHhcC-CCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeecc----Cc-----
Confidence 6777777777777776677777776 7777777777777666666 677777777777 66666554 44
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++.+|
T Consensus 278 --~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 278 --PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL------PRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred --hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC------CCCCEEECcCCCCcCcCC
Confidence 445555555555555555554 44455555555555555555555444443333 334444444444443322
Q ss_pred CC--------------cccccccCcccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCCCC
Q 047429 248 GV--------------TELDGTFPKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSSPM 296 (466)
Q Consensus 248 ~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l~~ 296 (466)
.. ..+.+.+|..+..+++|+.|++++|.+ ++++|++++..|..+..++.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 10 011223333333334444444443332 23335556667777777777
Q ss_pred ccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeee-----------eccCCC-------------Ccccccceee
Q 047429 297 LQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRI-----------QLIDDP-------------EFDYQDRALL 351 (466)
Q Consensus 297 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~-----------~~~~~~-------------~~~~~~~~~~ 351 (466)
|+.|++++|.+++.+|..+..+++|+.|+++++- .+... .+..+. .+.......+
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 7777777777777777777777777777644332 11100 000000 0000111111
Q ss_pred eeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 352 VWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
.+.+..+..+..+++|++|+|++|.++|.+|..++.+ +.+.+|..+.+++.|+.|++++|+++|.+|+
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 2223344455667788888888888888888777654 6778888888888888888888888888888
Q ss_pred CCCccccccccc
Q 047429 420 SIPLQTFEASAY 431 (466)
Q Consensus 420 ~~~~~~~~~~~~ 431 (466)
..++.++....+
T Consensus 590 ~~~~~~~~~~~~ 601 (968)
T PLN00113 590 TGAFLAINASAV 601 (968)
T ss_pred cchhcccChhhh
Confidence 766665554443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.16 Aligned_cols=384 Identities=28% Similarity=0.373 Sum_probs=305.7
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
.+..+++|++|++++|.+++..| ...+++|++|+|++|.+.+.. +..+.. +++|++|++++|.+.+..+ ..+
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~p--~~~ 184 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEI--PNDIGS-FSSLKVLDLGGNVLVGKIP--NSL 184 (968)
T ss_pred HhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccC--ChHHhc-CCCCCEEECccCcccccCC--hhh
Confidence 45589999999999999987766 256899999999999997653 556666 9999999999999987766 567
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
.. +++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|. .++++++|+.|+ +.|.+++. +|
T Consensus 185 ~~--l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~----~p--- 253 (968)
T PLN00113 185 TN--LTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGP----IP--- 253 (968)
T ss_pred hh--CcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccc----cC---
Confidence 77 9999999999999999999999999 9999999999999999998 999999999999 99998876 66
Q ss_pred cCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
..+..+++|++|++++|.+.+ +|..+.++++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++.
T Consensus 254 ----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 254 ----SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL------QNLEILHLFSNNFTGK 323 (968)
T ss_pred ----hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC------CCCcEEECCCCccCCc
Confidence 789999999999999999987 88899999999999999999999888877665 6899999999999876
Q ss_pred CCCC--------------cccccccCcccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCC
Q 047429 246 LPGV--------------TELDGTFPKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSS 294 (466)
Q Consensus 246 ~~~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l 294 (466)
.|.. ..+.+.+|..+..+++|+.|++++|++ ++++|.+.+.+|..+..+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 6542 245567788888888899999988875 356677777777777788
Q ss_pred CCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeee-ccCCCCccc-----------------------ccce
Q 047429 295 PMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQ-LIDDPEFDY-----------------------QDRA 349 (466)
Q Consensus 295 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~-~~~~~~~~~-----------------------~~~~ 349 (466)
++|+.|++++|.+++..|..|.+++.|+.++++++. .+.... ....+.+.. ....
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls 483 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECc
Confidence 888888888888888888888888888887754432 211100 000000000 0000
Q ss_pred eeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccC
Q 047429 350 LLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKI 417 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 417 (466)
.+.+.+..+..+..++.|+.|+|++|++.+.+|..++.+ +.+.+|..+.++++|+.|+|++|+++|.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 111223334445677788888888888888888877654 67788888999999999999999999888
Q ss_pred CCC
Q 047429 418 PSS 420 (466)
Q Consensus 418 p~~ 420 (466)
|..
T Consensus 564 p~~ 566 (968)
T PLN00113 564 PKN 566 (968)
T ss_pred Chh
Confidence 875
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=278.25 Aligned_cols=364 Identities=22% Similarity=0.314 Sum_probs=191.0
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 94 (466)
.+.||+++|++....+ ..|.++++|+.+++.+|.++.+ |..... ..+|+.|+|.+|.|+.+.. ..+.. ++.
T Consensus 80 t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt~I---P~f~~~-sghl~~L~L~~N~I~sv~s--e~L~~--l~a 150 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELTRI---PRFGHE-SGHLEKLDLRHNLISSVTS--EELSA--LPA 150 (873)
T ss_pred eeeeeccccccccCcH-HHHhcCCcceeeeeccchhhhc---cccccc-ccceeEEeeeccccccccH--HHHHh--Hhh
Confidence 3456666666666666 6666666666666666666655 211111 3345555555555444433 33333 444
Q ss_pred ccEEEcC------------------------CCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-
Q 047429 95 LTHLHLS------------------------LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT- 149 (466)
Q Consensus 95 L~~L~Ls------------------------~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~- 149 (466)
|+.|||+ +|+|+....+.|..+ .+|.+|.|+.|+++ .+|...|.++++|+.|+
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence 4445554 444444444444444 44444444444444 23333444444454444
Q ss_pred cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 150 SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
..|.+..... ..|.++++|+.|.|..|.+..+. ..|..+.++++|+|+.|+++..-.++..++
T Consensus 229 nrN~irive~-----------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL----- 292 (873)
T KOG4194|consen 229 NRNRIRIVEG-----------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL----- 292 (873)
T ss_pred cccceeeehh-----------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-----
Confidence 4444433210 23444444445555555444432 234444455555555555444333333333
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+|+.|++++|.|.... ++++..+++|+.|+|+. |+++...++.|..++.|+.|+|+.|.++
T Consensus 293 -t~L~~L~lS~NaI~rih----------~d~WsftqkL~~LdLs~-------N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 293 -TSLEQLDLSYNAIQRIH----------IDSWSFTQKLKELDLSS-------NRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred -chhhhhccchhhhheee----------cchhhhcccceeEeccc-------cccccCChhHHHHHHHhhhhcccccchH
Confidence 33555555555444111 23344455555555555 3334444455556666666666666666
Q ss_pred CCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 309 GMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 309 ~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
.+-..+|..+++|+.|++.++-..+.+. . ....+.+++.|+.|++.+|+++ .||.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IE------------------D-aa~~f~gl~~LrkL~l~gNqlk-~I~k----- 409 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIE------------------D-AAVAFNGLPSLRKLRLTGNQLK-SIPK----- 409 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEe------------------c-chhhhccchhhhheeecCceee-ecch-----
Confidence 5555566666666666644433222111 1 1223456889999999999998 5543
Q ss_pred ccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHHHH
Q 047429 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVKMA 458 (466)
Q Consensus 389 ~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (466)
.+|.+++.|++|||.+|.|...-|++..--.++...+.+ .-|.|.|...+ +..|+...+.
T Consensus 410 ------rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS---ssflCDCql~W-l~qWl~~~~l 469 (873)
T KOG4194|consen 410 ------RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS---SSFLCDCQLKW-LAQWLYRRKL 469 (873)
T ss_pred ------hhhccCcccceecCCCCcceeecccccccchhhhhhhcc---cceEEeccHHH-HHHHHHhccc
Confidence 368999999999999999985555442211333333332 33677787764 8888876544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-33 Score=267.24 Aligned_cols=334 Identities=25% Similarity=0.314 Sum_probs=254.0
Q ss_pred CcEEeCCCccccccchHHHhhcC--CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYH--NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
-+.||++++.+..... ..+.++ +.-+.|++++|.++.+. +..+.. +++|+.+++..|.++.++.. ... .
T Consensus 54 ~~lldcs~~~lea~~~-~~l~g~lp~~t~~LdlsnNkl~~id--~~~f~n-l~nLq~v~l~~N~Lt~IP~f---~~~--s 124 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDK-SRLKGFLPSQTQTLDLSNNKLSHID--FEFFYN-LPNLQEVNLNKNELTRIPRF---GHE--S 124 (873)
T ss_pred ceeeecCccccccccc-cccCCcCccceeeeeccccccccCc--HHHHhc-CCcceeeeeccchhhhcccc---ccc--c
Confidence 3578999998876543 333333 33567999999999884 555555 99999999999999987652 222 5
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|+|.+|.|+.+..+.+..+ +.|+.||||.|.++. ++..+|..-.++++|+ +.|.|+.... +
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l-~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~-----------~ 191 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL-PALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLET-----------G 191 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH-hhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccccccc-----------c
Confidence 679999999999998888888888 899999999999984 4443777778899999 9999988733 5
Q ss_pred cccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
.|..+.+|..|.|++|.++.+|. .|.++++|+.|+|..|+|.-...-.|..+ ++|+.|.|..|.+.
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL------~Sl~nlklqrN~I~------- 258 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL------PSLQNLKLQRNDIS------- 258 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc------hhhhhhhhhhcCcc-------
Confidence 67778888888899999888775 67778889999988888864433344444 56777777777776
Q ss_pred ccccccCc-ccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 251 ELDGTFPK-QFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 251 ~l~~~lp~-~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
.+.+ .|..+.++++|+|..|++ +++.|.|....++.+..+++|++|||++|+|+...+
T Consensus 259 ----kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 259 ----KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ----cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 2222 255666666666666655 355577777788888888999999999999998888
Q ss_pred hhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCC
Q 047429 313 TCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGK 392 (466)
Q Consensus 313 ~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ 392 (466)
..|..+..|+.|+++-+-. .++....+..+++|+.|||++|.++..|.+.
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi----------------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-------- 384 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSI----------------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-------- 384 (873)
T ss_pred hHHHHHHHhhhhcccccch----------------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------
Confidence 8999999998888433211 2334445577899999999999999776543
Q ss_pred CcccccCCCCCCeeeccCCcCcccCCC
Q 047429 393 IPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 393 ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
...|.++++|+.|++.+|++. .||.
T Consensus 385 -a~~f~gl~~LrkL~l~gNqlk-~I~k 409 (873)
T KOG4194|consen 385 -AVAFNGLPSLRKLRLTGNQLK-SIPK 409 (873)
T ss_pred -hhhhccchhhhheeecCceee-ecch
Confidence 224889999999999999998 7775
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-31 Score=242.91 Aligned_cols=347 Identities=24% Similarity=0.281 Sum_probs=218.8
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+.+++.+..++.++.++|++.. .| ..+..+.+|+.|+.++|.+... +.+++. +-.|..++..+|++...++
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~-lp-~~i~s~~~l~~l~~s~n~~~el---~~~i~~-~~~l~dl~~~~N~i~slp~--- 154 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSE-LP-EQIGSLISLVKLDCSSNELKEL---PDSIGR-LLDLEDLDATNNQISSLPE--- 154 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhh-cc-HHHhhhhhhhhhhccccceeec---CchHHH-HhhhhhhhccccccccCch---
Confidence 4445555555555555555542 23 4455556666666666666555 445555 6666666666666666554
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.++. +.++..+++.+|.++...|..+. + +.|++||...|-+. .+|. .++.+.+|..|+ ..|++... |
T Consensus 155 ~~~~--~~~l~~l~~~~n~l~~l~~~~i~-m-~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~l-----P- 222 (565)
T KOG0472|consen 155 DMVN--LSKLSKLDLEGNKLKALPENHIA-M-KRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRFL-----P- 222 (565)
T ss_pred HHHH--HHHHHHhhccccchhhCCHHHHH-H-HHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhcccccC-----C-
Confidence 3444 56677777777777655554444 5 77888888877776 6676 778888888888 77777653 3
Q ss_pred cccCccccccCCCccCEEecCCCcCCCCCcc-cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.|.++..|++|.++.|+|+.+|+. ...++++..||++.|+++. .|+...-+ .+|.+||+++|.|+
T Consensus 223 -------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL------rsL~rLDlSNN~is 288 (565)
T KOG0472|consen 223 -------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL------RSLERLDLSNNDIS 288 (565)
T ss_pred -------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHh------hhhhhhcccCCccc
Confidence 566666677777777777666653 3366777777777777763 33333333 45677777777776
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCee-----------------------------------------------
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------------------------------------- 276 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------------------------------------- 276 (466)
.+|..++++ +|+.|.+.+|.+
T Consensus 289 -----------~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 289 -----------SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred -----------cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 334444444 444444444443
Q ss_pred -------------------------------------------------------------eeecccccccCCCCCCCCC
Q 047429 277 -------------------------------------------------------------WLRFNHINGSATPKLCSSP 295 (466)
Q Consensus 277 -------------------------------------------------------------~l~~n~~~~~~~~~~~~l~ 295 (466)
.+++|.+ +-+|..++.++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~ 435 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQ 435 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhh
Confidence 1444444 46677788888
Q ss_pred CccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCC
Q 047429 296 MLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD 374 (466)
Q Consensus 296 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 374 (466)
+|..|+|++|.+. .+|..++.+..|+.++++.+ |...+-....-............+..+++.-...|++|..|||.+
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 8888888888887 67888888888888885443 222110000000000000001122334445567899999999999
Q ss_pred CcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 375 NNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 375 N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
|.+. .||+.++++++|++|++++|.|.
T Consensus 515 Ndlq-------------~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-------------QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-------------hCChhhccccceeEEEecCCccC
Confidence 9998 77888999999999999999997
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-30 Score=247.35 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=65.2
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
.++.+.+|++|.+++|++.... ..+..++.||.+++.+|++.... +|.+++. +..|++||||+|++.+.+. .+
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsG-iP~diF~-l~dLt~lDLShNqL~EvP~---~L 122 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSG-IPTDIFR-LKDLTILDLSHNQLREVPT---NL 122 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCC-CCchhcc-cccceeeecchhhhhhcch---hh
Confidence 3444445555555555544221 33444555555555555443321 1445555 5555555555555554433 22
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYIT 155 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~ 155 (466)
.. .+++-+|+|++|+|..+.-..|.++ ..|-.||||+|++. ..|. .+..+..|++|. ++|.+.
T Consensus 123 E~--AKn~iVLNLS~N~IetIPn~lfinL-tDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 123 EY--AKNSIVLNLSYNNIETIPNSLFINL-TDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hh--hcCcEEEEcccCccccCCchHHHhh-HhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh
Confidence 22 3455555555555554333334444 55555555555554 3344 445555555555 544443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-30 Score=245.67 Aligned_cols=271 Identities=21% Similarity=0.283 Sum_probs=144.6
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc--------
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY-------- 82 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------- 82 (466)
-++-++-.|+++|.++|.-.+.....+++++-|.|...++..+ |..+.. +.+|++|.+++|++..+..
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v---PeEL~~-lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV---PEELSR-LQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC---hHHHHH-HhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3455555666666665433325555555555555555555444 444444 5555555555554443322
Q ss_pred ---------------cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc
Q 047429 83 ---------------RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147 (466)
Q Consensus 83 ---------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 147 (466)
. ..+.. +..|+.|+|++|++. ..|..+... +++-+|+||+|+|. .+|...|.++..|-.
T Consensus 81 Rsv~~R~N~LKnsGiP-~diF~--l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIP-TDIFR--LKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred HHHhhhccccccCCCC-chhcc--cccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 1 22333 444555555555544 334444444 44555555555544 333334444444555
Q ss_pred cc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCC-Cccchhhhhcc
Q 047429 148 LT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILT-AKLPELFLNFS 224 (466)
Q Consensus 148 L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 224 (466)
|+ +.|.+.. +| ..+..+..|+.|.|++|.+.. --..+..+++|+.|.+++.+-+ ..+|....++
T Consensus 155 LDLS~NrLe~-----LP-------PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l- 221 (1255)
T KOG0444|consen 155 LDLSNNRLEM-----LP-------PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL- 221 (1255)
T ss_pred hccccchhhh-----cC-------HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-
Confidence 55 4444443 22 234444455555555554433 1122333444445555443322 1233333333
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 304 (466)
.+|..+|+|.|.+. .+|+.+.++++|+.|+|++|+| ..+.-......+|+.|++|.
T Consensus 222 -----~NL~dvDlS~N~Lp-----------~vPecly~l~~LrrLNLS~N~i--------teL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 222 -----HNLRDVDLSENNLP-----------IVPECLYKLRNLRRLNLSGNKI--------TELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred -----hhhhhccccccCCC-----------cchHHHhhhhhhheeccCcCce--------eeeeccHHHHhhhhhhcccc
Confidence 46888888988887 8888899999999999999877 23333344456677777777
Q ss_pred CCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 305 NNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 305 N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
|+++ .+|.++..+++|+.|...++
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccC
Confidence 7776 66777777777777664443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-29 Score=226.26 Aligned_cols=245 Identities=27% Similarity=0.303 Sum_probs=143.5
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
.++..+.+|++++|++... | ..++.+..+..|+.++|+++.. |..+.. +.+|+.++++.|.+...++ .++.
T Consensus 65 ~nL~~l~vl~~~~n~l~~l-p-~aig~l~~l~~l~vs~n~ls~l---p~~i~s-~~~l~~l~~s~n~~~el~~---~i~~ 135 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQL-P-AAIGELEALKSLNVSHNKLSEL---PEQIGS-LISLVKLDCSSNELKELPD---SIGR 135 (565)
T ss_pred hcccceeEEEeccchhhhC-C-HHHHHHHHHHHhhcccchHhhc---cHHHhh-hhhhhhhhccccceeecCc---hHHH
Confidence 3444555555555555422 2 3445555555555555555554 445544 5555555555555555443 3344
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+..++.++..+|++.. .|+.+..+ .++..|++.+|.+....|. .+. ++.|++|+ ..|-++. +|
T Consensus 136 --~~~l~dl~~~~N~i~s-lp~~~~~~-~~l~~l~~~~n~l~~l~~~-~i~-m~~L~~ld~~~N~L~t-----lP----- 199 (565)
T KOG0472|consen 136 --LLDLEDLDATNNQISS-LPEDMVNL-SKLSKLDLEGNKLKALPEN-HIA-MKRLKHLDCNSNLLET-----LP----- 199 (565)
T ss_pred --Hhhhhhhhcccccccc-CchHHHHH-HHHHHhhccccchhhCCHH-HHH-HHHHHhcccchhhhhc-----CC-----
Confidence 4555555555565553 34444444 5556666666666533332 333 66666666 4444443 44
Q ss_pred ccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..++.+.+|.-|++..|++..+| .|.++..|+.|.++.|++. ..|....+.+ +++.+||+..|+++
T Consensus 200 --~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L-----~~l~vLDLRdNklk----- 265 (565)
T KOG0472|consen 200 --PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHL-----NSLLVLDLRDNKLK----- 265 (565)
T ss_pred --hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhccc-----ccceeeeccccccc-----
Confidence 45666666666666666666666 5666666666666666665 3333333221 46777788888777
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
++|+.++.+++|+.||+++|.| ...|..++++ +|+.|-+.+|.+.
T Consensus 266 ------e~Pde~clLrsL~rLDlSNN~i--------s~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 266 ------EVPDEICLLRSLERLDLSNNDI--------SSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ------cCchHHHHhhhhhhhcccCCcc--------ccCCcccccc-eeeehhhcCCchH
Confidence 7777777777788888877655 4677777777 7788878777764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-25 Score=224.52 Aligned_cols=282 Identities=24% Similarity=0.297 Sum_probs=159.6
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
++.+.-+|+.||+++|.+... | ..+..+.+|+.|+++.|.|... +..... +.+|+++.|.+|.+...+. .+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~f-p-~~it~l~~L~~ln~s~n~i~~v---p~s~~~-~~~l~~lnL~~n~l~~lP~---~~ 110 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSF-P-IQITLLSHLRQLNLSRNYIRSV---PSSCSN-MRNLQYLNLKNNRLQSLPA---SI 110 (1081)
T ss_pred HhhheeeeEEeeccccccccC-C-chhhhHHHHhhcccchhhHhhC---chhhhh-hhcchhheeccchhhcCch---hH
Confidence 344444566777776665532 2 3455555555666665555554 333333 4555555555555444332 33
Q ss_pred ccCCCCCccEEEcCCCCCC------------------------------------------chhhhhhhcccCCCcEEEc
Q 047429 88 VNSSSSSLTHLHLSLCGLS------------------------------------------NSAYHCLSHISKSLVYLDL 125 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~------------------------------------------~~~~~~l~~l~~~L~~L~L 125 (466)
.. +++|++|++++|.+. +.++..+..+ .. .|+|
T Consensus 111 ~~--lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~--~ldL 185 (1081)
T KOG0618|consen 111 SE--LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-TH--QLDL 185 (1081)
T ss_pred Hh--hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-he--eeec
Confidence 33 445555555555443 2222222222 22 3677
Q ss_pred cCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc----Cc---cccccCCCccCEEecCCCcCCCCCcccC
Q 047429 126 SNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV----RP---KYAFSNVTSLMDLDLSKNQITGIPKSFG 197 (466)
Q Consensus 126 s~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~----~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~l~ 197 (466)
..|.+. .. .+..+.+|+.+. ..|.+.....+....... .+ ...-..-.+|++++++.|.++.+|+++.
T Consensus 186 r~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~ 261 (1081)
T KOG0618|consen 186 RYNEME-VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG 261 (1081)
T ss_pred ccchhh-hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH
Confidence 776665 11 334455555555 555444332211100000 00 0001123478888888888888888888
Q ss_pred CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-
Q 047429 198 DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL- 276 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l- 276 (466)
.+.+|+.++..+|.++. .|...... .+|+.|.+.+|.+. .+|......++|++|+|..|+|
T Consensus 262 ~~~nle~l~~n~N~l~~-lp~ri~~~------~~L~~l~~~~nel~-----------yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVA-LPLRISRI------TSLVSLSAAYNELE-----------YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hcccceEecccchhHHh-hHHHHhhh------hhHHHHHhhhhhhh-----------hCCCcccccceeeeeeehhcccc
Confidence 88899999998888864 33322222 34666666666666 5555566666777777776665
Q ss_pred -----------------------------------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhh
Q 047429 277 -----------------------------------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 277 -----------------------------------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
++.+|+++...-+.+.+.++|+.|+|++|++.......+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 366777777777777777888888888888875555567
Q ss_pred hhhhhhhhcC
Q 047429 316 NNLSAMVQNG 325 (466)
Q Consensus 316 ~~l~~L~~l~ 325 (466)
.++..|+.|+
T Consensus 404 ~kle~LeeL~ 413 (1081)
T KOG0618|consen 404 RKLEELEELN 413 (1081)
T ss_pred hchHHhHHHh
Confidence 7777776665
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-22 Score=203.62 Aligned_cols=218 Identities=26% Similarity=0.309 Sum_probs=155.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+-..|+++++.++.. | ..+. .+|+.|++++|+++.++ . ..++|++|++++|.++.++. . .
T Consensus 201 ~~~~~LdLs~~~LtsL-P-~~l~--~~L~~L~L~~N~Lt~LP---~----lp~~Lk~LdLs~N~LtsLP~------l--p 261 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLTSLP---A----LPPELRTLEVSGNQLTSLPV------L--P 261 (788)
T ss_pred CCCcEEEcCCCCCCcC-C-cchh--cCCCEEEccCCcCCCCC---C----CCCCCcEEEecCCccCcccC------c--c
Confidence 3456789999988843 4 3343 47899999999988873 1 26789999999999887653 1 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++. +|..+ .+|+.|++++|+++ .+|. ..++|+.|+ ++|.++.+ | .
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~lp----~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-----p-------~ 319 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPALP----SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-----P-------A 319 (788)
T ss_pred cccceeeccCCchhh-hhhch----hhcCEEECcCCccc-cccc----cccccceeECCCCccccC-----C-------C
Confidence 678999999998874 34322 67889999999887 4454 246788888 88888763 3 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
. ..+|+.|++++|.++.+|.. ..+|++|++++|++++ +|.. |.+|+.|++++|.++
T Consensus 320 l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---------p~~L~~L~Ls~N~L~-------- 375 (788)
T PRK15387 320 L---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---------PSELYKLWAYNNRLT-------- 375 (788)
T ss_pred C---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---------Ccccceehhhccccc--------
Confidence 1 23577888899988887752 2478899999998885 3331 246888899999887
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT 313 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 313 (466)
.+|.. ..+|+.|++++|.| + .+|.. .++|+.|++++|.+++ +|.
T Consensus 376 ---~LP~l---~~~L~~LdLs~N~L-------t-~LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 376 ---SLPAL---PSGLKELIVSGNRL-------T-SLPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred ---cCccc---ccccceEEecCCcc-------c-CCCCc---ccCCCEEEccCCcCCC-CCc
Confidence 44542 24688888888665 2 44443 2578889999999874 454
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-23 Score=205.36 Aligned_cols=354 Identities=26% Similarity=0.289 Sum_probs=226.0
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.+..|+++.|.+..... ++..+.-+|+.|++++|.++.. |..+.. +++|+.|+++.|.+...+. .... +.
T Consensus 22 ~~~~ln~~~N~~l~~pl-~~~~~~v~L~~l~lsnn~~~~f---p~~it~-l~~L~~ln~s~n~i~~vp~---s~~~--~~ 91 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPL-EFVEKRVKLKSLDLSNNQISSF---PIQITL-LSHLRQLNLSRNYIRSVPS---SCSN--MR 91 (1081)
T ss_pred HHHhhhccccccccCch-HHhhheeeeEEeeccccccccC---Cchhhh-HHHHhhcccchhhHhhCch---hhhh--hh
Confidence 37788999888765444 6777777799999999999887 667777 9999999999999988764 5666 89
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc-ccccccccC---CCccc--
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN-YITGISKCS---LPITL-- 166 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n-~l~~~~~~~---l~~~~-- 166 (466)
+|++|.|.+|.+. ..|..+..+ ++|+.|+++.|.+. .+|. .+..+..+..+. ++| ++...+... +....
T Consensus 92 ~l~~lnL~~n~l~-~lP~~~~~l-knl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQ-SLPASISEL-KNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV 167 (1081)
T ss_pred cchhheeccchhh-cCchhHHhh-hcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh
Confidence 9999999999987 678899999 99999999999987 6777 777777777777 666 222111000 00000
Q ss_pred --cCccccccCCCccCEEecCCCcCCCCCcccCCC--------------------CCcCEEEeeCCcCCCccchhhhhcc
Q 047429 167 --VRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM--------------------CCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 167 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l--------------------~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
..+...+..++. .|+|.+|.+... .+..+ ++|+.|+.++|.++.. .
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~--------~ 235 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL--------D 235 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee--------c
Confidence 111123333333 488888877621 11222 3444555555554422 1
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------------eeecccccccCC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------WLRFNHINGSAT 288 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------~l~~n~~~~~~~ 288 (466)
....|.+|+.+++++|+++ .+|+|+..+.+|+.++..+|.+ ....|.+. -+|
T Consensus 236 ~~p~p~nl~~~dis~n~l~-----------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLS-----------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred cccccccceeeecchhhhh-----------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCC
Confidence 2235567999999999998 8888999999999999999887 24456664 577
Q ss_pred CCCCCCCCccEEEccCCCCCCCchhhhhhhhh-hhhcC-CCCceeeeeeeccCCC--Ccccccceeeeeecccchhhhcc
Q 047429 289 PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA-MVQNG-SSNVIVEYRIQLIDDP--EFDYQDRALLVWKPIDSIYKITL 364 (466)
Q Consensus 289 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~l~-~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
+....++.|+.|||..|++...++..|.-+.. +..++ ..+.+...+ ...+.. .+.......+.+.......+.++
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 77888999999999999997444434433333 55555 222222111 000000 00001111111111112223467
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
.+|+.|+|++|++. .+|.. .+.++..|+.|+||||+++ .+|+
T Consensus 383 ~hLKVLhLsyNrL~-~fpas-----------~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPAS-----------KLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred cceeeeeecccccc-cCCHH-----------HHhchHHhHHHhcccchhh-hhhH
Confidence 77888888888877 44443 2455566666666666665 4554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=202.81 Aligned_cols=275 Identities=18% Similarity=0.140 Sum_probs=181.1
Q ss_pred ccccccCCcCCcEEeCCCccc------cccchHHHhhcCC-CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCC
Q 047429 5 EAGFHISLEDLQSINIGLNAI------RVRKFDQWLSYHN-KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
+..+|..+++|+.|.+..+.. ....| ..+..++ +|+.|++.++.+... |..+ . ..+|++|++.+|.+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~l---P~~f-~-~~~L~~L~L~~s~l 623 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCM---PSNF-R-PENLVKLQMQGSKL 623 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCC---CCcC-C-ccCCcEEECcCccc
Confidence 345688999999999976542 22334 4555554 599999999988877 4343 4 68999999999988
Q ss_pred CCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccc-cc
Q 047429 78 PKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNY-IT 155 (466)
Q Consensus 78 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~-l~ 155 (466)
..... .+.. +++|++|+++++......|. +..+ ++|++|++++|.....+|. .+..+++|+.|+ +.|. +.
T Consensus 624 ~~L~~---~~~~--l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 624 EKLWD---GVHS--LTGLRNIDLRGSKNLKEIPD-LSMA-TNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccc---cccc--CCCCCEEECCCCCCcCcCCc-cccC-CcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcC
Confidence 87644 3445 88999999998765445553 6667 8999999999876667888 889999999999 6553 33
Q ss_pred cccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccce
Q 047429 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234 (466)
Q Consensus 156 ~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 234 (466)
. +| ..+ ++++|+.|++++|.... +|.. ..+|+.|++++|.+.. +|..+ .+ ++|+.
T Consensus 696 ~-----Lp-------~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l------~~L~~ 751 (1153)
T PLN03210 696 I-----LP-------TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RL------ENLDE 751 (1153)
T ss_pred c-----cC-------CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cc------ccccc
Confidence 3 45 333 67889999999885433 5543 4578899999988764 34322 11 45677
Q ss_pred EecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhh
Q 047429 235 FMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 235 L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
|++.++........ +....|..+..+++|+.|++++| ...+.+|..++++++|+.|++++|...+.+|..
T Consensus 752 L~l~~~~~~~l~~~---~~~l~~~~~~~~~sL~~L~Ls~n-------~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 752 LILCEMKSEKLWER---VQPLTPLMTMLSPSLTRLFLSDI-------PSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccchhhcccc---ccccchhhhhccccchheeCCCC-------CCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 76665432100000 00011112233467777777774 333566777777777788887776544456655
Q ss_pred hhhhhhhhhcCCCC
Q 047429 315 LNNLSAMVQNGSSN 328 (466)
Q Consensus 315 ~~~l~~L~~l~~~n 328 (466)
+ ++++|+.|+++.
T Consensus 822 ~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 822 I-NLESLESLDLSG 834 (1153)
T ss_pred C-CccccCEEECCC
Confidence 4 566666666443
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-22 Score=186.20 Aligned_cols=267 Identities=24% Similarity=0.300 Sum_probs=172.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCC-CCCCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS-SAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~l 92 (466)
.-..++|..|.|+.+.+ ..|+.+++||.||||+|.|+.+. + ..++++++|..|-+.+ |+|+.++. ..|.. +
T Consensus 68 ~tveirLdqN~I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~--p-~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~g--L 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP-GAFKTLHRLRRLDLSKNNISFIA--P-DAFKGLASLLSLVLYGNNKITDLPK--GAFGG--L 139 (498)
T ss_pred cceEEEeccCCcccCCh-hhccchhhhceecccccchhhcC--h-HhhhhhHhhhHHHhhcCCchhhhhh--hHhhh--H
Confidence 34556666777775544 67777777777777777776663 3 3333366665554443 66776665 56666 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccccc---------------
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG--------------- 156 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~--------------- 156 (466)
.+++.|.+.-|++.-...+.|..+ +++..|.+.+|.+. .++.++|..+..++.+. ..|....
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 677777777776666666666666 66666666666665 33333555555555554 3332100
Q ss_pred ----ccccCCCccc--------------------------------cCccccccCCCccCEEecCCCcCCCC-CcccCCC
Q 047429 157 ----ISKCSLPITL--------------------------------VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDM 199 (466)
Q Consensus 157 ----~~~~~l~~~~--------------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l 199 (466)
...+..|..+ .-+...|..+++|+.|++++|+++.+ +.+|.+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 0000000000 12224578899999999999999995 4589999
Q ss_pred CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee---
Q 047429 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL--- 276 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l--- 276 (466)
..++.|.|..|++.......|..+ ..|+.|+|++|+|+-.. |.+|..+.+|..|+|-.|.+
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~l------s~L~tL~L~~N~it~~~----------~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGL------SGLKTLSLYDNQITTVA----------PGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhcc------ccceeeeecCCeeEEEe----------cccccccceeeeeehccCcccCc
Confidence 999999999999986666666665 57999999999998332 45688889999999988876
Q ss_pred --------eeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 277 --------WLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 277 --------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
|+++....|..| . ..-..++.++++...+.
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~-C-q~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPR-C-QSPGFVRQIPISDVAFG 399 (498)
T ss_pred cchHHHHHHHhhCCCCCCCC-C-CCCchhccccchhcccc
Confidence 788877444332 1 12234667777766654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=186.67 Aligned_cols=245 Identities=27% Similarity=0.313 Sum_probs=189.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|+.|++++|+++.. | . ..++|++|++++|+++.++ . ..++|++|++++|.+..++.. .
T Consensus 222 ~~L~~L~L~~N~Lt~L-P-~---lp~~Lk~LdLs~N~LtsLP---~----lp~sL~~L~Ls~N~L~~Lp~l--------p 281 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLTSLP---V----LPPGLLELSIFSNPLTHLPAL--------P 281 (788)
T ss_pred cCCCEEEccCCcCCCC-C-C---CCCCCcEEEecCCccCccc---C----cccccceeeccCCchhhhhhc--------h
Confidence 3789999999999864 3 2 3688999999999999873 2 156899999999998876541 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|++++|+++.. |.. . ++|+.|++++|.+.+ +|. . ...|+.|. +.|.++. +| .
T Consensus 282 ~~L~~L~Ls~N~Lt~L-P~~---p-~~L~~LdLS~N~L~~-Lp~-l---p~~L~~L~Ls~N~L~~-----LP-------~ 339 (788)
T PRK15387 282 SGLCKLWIFGNQLTSL-PVL---P-PGLQELSVSDNQLAS-LPA-L---PSELCKLWAYNNQLTS-----LP-------T 339 (788)
T ss_pred hhcCEEECcCCccccc-ccc---c-cccceeECCCCcccc-CCC-C---cccccccccccCcccc-----cc-------c
Confidence 6799999999999854 432 3 789999999999984 443 2 24577888 8888876 33 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
+ ..+|++|++++|+++.+|.. ..+|+.|++++|++++ +|.. +.+|+.|++++|.++
T Consensus 340 -l--p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---------~~~L~~LdLs~N~Lt-------- 395 (788)
T PRK15387 340 -L--PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL---------PSGLKELIVSGNRLT-------- 395 (788)
T ss_pred -c--ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc---------ccccceEEecCCccc--------
Confidence 1 24799999999999998864 3578899999999985 4432 246999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|+++ .+|..+.+++.|
T Consensus 396 ---~LP~l---~s~L~~LdLS~N~L--------ssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L---------- 447 (788)
T PRK15387 396 ---SLPVL---PSELKELMVSGNRL--------TSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE---------- 447 (788)
T ss_pred ---CCCCc---ccCCCEEEccCCcC--------CCCCcc---hhhhhhhhhccCccc-ccChHHhhccCC----------
Confidence 45543 35799999999765 345643 346889999999998 678888776666
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHh
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~ 387 (466)
+.|+|++|++++.+|..+..
T Consensus 448 ------------------------------------~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 448 ------------------------------------TTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ------------------------------------CeEECCCCCCCchHHHHHHH
Confidence 88999999999887776644
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=188.13 Aligned_cols=207 Identities=25% Similarity=0.346 Sum_probs=124.2
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
+.+.|++++++++.+ |..+ .++|+.|++++|.++.++. .+ ..+|++|++++|.++. +|..+. .
T Consensus 179 ~~~~L~L~~~~LtsL---P~~I---p~~L~~L~Ls~N~LtsLP~---~l----~~nL~~L~Ls~N~Lts-LP~~l~---~ 241 (754)
T PRK15370 179 NKTELRLKILGLTTI---PACI---PEQITTLILDNNELKSLPE---NL----QGNIKTLYANSNQLTS-IPATLP---D 241 (754)
T ss_pred CceEEEeCCCCcCcC---Cccc---ccCCcEEEecCCCCCcCCh---hh----ccCCCEEECCCCcccc-CChhhh---c
Confidence 456677777766665 3333 2356777777777665543 11 2467777777777663 344332 4
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccC
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFG 197 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~ 197 (466)
+|+.|+|++|.+. .+|. .+. .+|+.|+ +.|.++. +| ..+. ++|+.|++++|.++.+|..+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~-----LP-------~~l~--~sL~~L~Ls~N~Lt~LP~~lp 303 (754)
T PRK15370 242 TIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISC-----LP-------ENLP--EELRYLSVYDNSIRTLPAHLP 303 (754)
T ss_pred cccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCc-----cc-------cccC--CCCcEEECCCCccccCcccch
Confidence 5677777777766 4454 332 3566666 6666654 33 2221 367778888887777765443
Q ss_pred CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeee
Q 047429 198 DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~ 277 (466)
++|+.|++++|.++.. |.. .+++|+.|++++|.++ .+|..+. ++|+.|++++|++
T Consensus 304 --~sL~~L~Ls~N~Lt~L-P~~--------l~~sL~~L~Ls~N~Lt-----------~LP~~l~--~sL~~L~Ls~N~L- 358 (754)
T PRK15370 304 --SGITHLNVQSNSLTAL-PET--------LPPGLKTLEAGENALT-----------SLPASLP--PELQVLDVSKNQI- 358 (754)
T ss_pred --hhHHHHHhcCCccccC-Ccc--------ccccceeccccCCccc-----------cCChhhc--CcccEEECCCCCC-
Confidence 3677777888777643 321 1245777888888777 4444442 5777888877655
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhh
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
..+|..+ .+.|++|+|++|.+++ +|..+
T Consensus 359 -------~~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 359 -------TVLPETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred -------CcCChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 2344433 2567888888888774 44443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=188.99 Aligned_cols=317 Identities=21% Similarity=0.191 Sum_probs=218.8
Q ss_pred cccCC-cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 8 FHISL-EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 8 ~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+..+ .+|+.|.+.++.+... | ..| ...+|++|+++++.+... +..+.. +++|++|+|+++......+ .
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~l-P-~~f-~~~~L~~L~L~~s~l~~L---~~~~~~-l~~Lk~L~Ls~~~~l~~ip---~ 652 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCM-P-SNF-RPENLVKLQMQGSKLEKL---WDGVHS-LTGLRNIDLRGSKNLKEIP---D 652 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCC-C-CcC-CccCCcEEECcCcccccc---cccccc-CCCCCEEECCCCCCcCcCC---c
Confidence 34444 4699999999988754 4 444 578999999999998877 445555 9999999999875333333 3
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. +++|++|++++|......|..+..+ ++|+.|++++|.....+|. .+ ++++|+.|+ ++|..... +|
T Consensus 653 ls~--l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~----~p-- 721 (1153)
T PLN03210 653 LSM--ATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKS----FP-- 721 (1153)
T ss_pred ccc--CCcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccc----cc--
Confidence 555 8999999999997767788899999 9999999999865556776 44 788999998 66643322 33
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc--cccccccccceEecCCcccc
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF--SAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~ 243 (466)
. ..++|+.|++++|.+..+|..+ .+++|++|++.++...... ...... .....+++|+.|++++|...
T Consensus 722 -----~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 722 -----D---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred -----c---ccCCcCeeecCCCccccccccc-cccccccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCc
Confidence 2 2468999999999998888765 5788999988775432111 000000 01123467999999998654
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+ .+|.++.++++|+.|++++|. .+ +.+|..+ .+++|+.|++++|.....+|... ++|+.
T Consensus 792 ~----------~lP~si~~L~~L~~L~Ls~C~------~L-~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~ 850 (1153)
T PLN03210 792 V----------ELPSSIQNLHKLEHLEIENCI------NL-ETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNISD 850 (1153)
T ss_pred c----------ccChhhhCCCCCCEEECCCCC------Cc-CeeCCCC-CccccCEEECCCCCccccccccc---cccCE
Confidence 2 567789999999999999852 22 4566655 78899999999987555555433 34444
Q ss_pred cCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCC-CcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 324 NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD-NNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 324 l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
|+++++.. . ..+..+..+++|+.|+|++ |++. .+|..+..+++
T Consensus 851 L~Ls~n~i----------------------~-~iP~si~~l~~L~~L~L~~C~~L~-------------~l~~~~~~L~~ 894 (1153)
T PLN03210 851 LNLSRTGI----------------------E-EVPWWIEKFSNLSFLDMNGCNNLQ-------------RVSLNISKLKH 894 (1153)
T ss_pred eECCCCCC----------------------c-cChHHHhcCCCCCEEECCCCCCcC-------------ccCcccccccC
Confidence 44322211 0 1122345677778888887 4455 34445666777
Q ss_pred CCeeeccCCc
Q 047429 403 LGVVNLSNNN 412 (466)
Q Consensus 403 L~~L~Ls~N~ 412 (466)
|+.+++++|.
T Consensus 895 L~~L~l~~C~ 904 (1153)
T PLN03210 895 LETVDFSDCG 904 (1153)
T ss_pred CCeeecCCCc
Confidence 7777777764
|
syringae 6; Provisional |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-19 Score=185.71 Aligned_cols=232 Identities=23% Similarity=0.372 Sum_probs=173.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+...|+++++.++.. | ..+ .++|+.|+|++|.++.+ +..+. ++|++|++++|.++.++. .+ .
T Consensus 178 ~~~~~L~L~~~~LtsL-P-~~I--p~~L~~L~Ls~N~LtsL---P~~l~---~nL~~L~Ls~N~LtsLP~---~l----~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTI-P-ACI--PEQITTLILDNNELKSL---PENLQ---GNIKTLYANSNQLTSIPA---TL----P 240 (754)
T ss_pred cCceEEEeCCCCcCcC-C-ccc--ccCCcEEEecCCCCCcC---Chhhc---cCCCEEECCCCccccCCh---hh----h
Confidence 4568899999988854 3 333 35799999999999987 44443 589999999999987654 22 3
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|. .+. .+|+.|+ +.|.++. +| .
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~-----LP-------~ 300 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRT-----LP-------A 300 (754)
T ss_pred ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCcccc-----Cc-------c
Confidence 47999999999998 4566553 67999999999998 4665 443 5799999 8888876 33 2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+++ +|.. .+++|+.|++++|+++
T Consensus 301 ~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~--------l~~sL~~L~Ls~N~L~-------- 359 (754)
T PRK15370 301 HLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPAS--------LPPELQVLDVSKNQIT-------- 359 (754)
T ss_pred cch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChh--------hcCcccEEECCCCCCC--------
Confidence 222 478999999999998876543 689999999999985 4432 2357999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNL 318 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 318 (466)
.+|..+ .++|++|++++|.+ + .+|..+. ..|+.|++++|++. .+|..+.++
T Consensus 360 ---~LP~~l--p~~L~~LdLs~N~L-------t-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 360 ---VLPETL--PPTITTLDVSRNAL-------T-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred ---cCChhh--cCCcCEEECCCCcC-------C-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 555544 25899999999765 3 4565543 36999999999998 566655543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-21 Score=178.26 Aligned_cols=294 Identities=22% Similarity=0.282 Sum_probs=198.8
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCCc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~ 144 (466)
.-..++|..|.|+.+++ .+|.. +++|+.|||++|.|+.+.|++|.++ ..+..|-+.+ |+|+ .+|...|+++..
T Consensus 68 ~tveirLdqN~I~~iP~--~aF~~--l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP--GAFKT--LHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccCCcccCCh--hhccc--hhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 66789999999999988 78888 9999999999999999999999998 7776666655 8888 566669999999
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCcc-chhhh
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKL-PELFL 221 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~ 221 (466)
++.|. .-|++... .. ..|..+++|..|.+..|.+..++. .|..+.+++++.+..|.+-... ..+..
T Consensus 142 lqrLllNan~i~Ci----r~-------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 142 LQRLLLNANHINCI----RQ-------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred HHHHhcChhhhcch----hH-------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 99888 77777665 33 688899999999999999988876 7888999999998888742111 00000
Q ss_pred hc-------cccccccccceEecCCccccccCCCCcccccccCc-ccCC-CCCCcEEeCCCCeeeeecccccccCC-CCC
Q 047429 222 NF-------SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCR-PSSLVELDLESNQLWLRFNHINGSAT-PKL 291 (466)
Q Consensus 222 ~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~-l~~L~~L~L~~n~l~l~~n~~~~~~~-~~~ 291 (466)
.. ++|- .-.....+.+.++. .++. .|.. ...+..-..+. +...+..| ..|
T Consensus 211 ~~~a~~~ietsga--rc~~p~rl~~~Ri~-----------q~~a~kf~c~~esl~s~~~~~-------d~~d~~cP~~cf 270 (498)
T KOG4237|consen 211 DDLAMNPIETSGA--RCVSPYRLYYKRIN-----------QEDARKFLCSLESLPSRLSSE-------DFPDSICPAKCF 270 (498)
T ss_pred hHHhhchhhcccc--eecchHHHHHHHhc-----------ccchhhhhhhHHhHHHhhccc-------cCcCCcChHHHH
Confidence 00 0000 01122223333333 1111 1111 11221111112 22223333 468
Q ss_pred CCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEE
Q 047429 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSID 371 (466)
Q Consensus 292 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 371 (466)
..+++|+.|+|++|+++++-+.+|.+...+ ++|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l----------------------------------------------~eL~ 304 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAEL----------------------------------------------QELY 304 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhh----------------------------------------------hhhh
Confidence 899999999999999999999999988888 6677
Q ss_pred CCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHH
Q 047429 372 LSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYA 451 (466)
Q Consensus 372 Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (466)
|..|++. .+... .|.++..|++|+|.+|+|+..-|. .++++...+-.++-.++|.|.|+..+ +-.
T Consensus 305 L~~N~l~-~v~~~-----------~f~~ls~L~tL~L~~N~it~~~~~--aF~~~~~l~~l~l~~Np~~CnC~l~w-l~~ 369 (498)
T KOG4237|consen 305 LTRNKLE-FVSSG-----------MFQGLSGLKTLSLYDNQITTVAPG--AFQTLFSLSTLNLLSNPFNCNCRLAW-LGE 369 (498)
T ss_pred cCcchHH-HHHHH-----------hhhccccceeeeecCCeeEEEecc--cccccceeeeeehccCcccCccchHH-HHH
Confidence 7777776 33322 367777788888888888744443 33455555555556677888888764 777
Q ss_pred HHHHHH
Q 047429 452 WIAVKM 457 (466)
Q Consensus 452 ~~~~~~ 457 (466)
|+..+.
T Consensus 370 Wlr~~~ 375 (498)
T KOG4237|consen 370 WLRKKS 375 (498)
T ss_pred HHhhCC
Confidence 776543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-19 Score=173.26 Aligned_cols=276 Identities=23% Similarity=0.253 Sum_probs=179.6
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCc--cchHHHHhcCCCCCCEEEcCCCCCCCCCc----cccccccC
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINY----RSHSLVNS 90 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~ 90 (466)
.|+|+.+.+++......+..+..|++|+++++.++.. ..++..+.. .+.+++++++++.+..... ....+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~- 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTK- 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHh-
Confidence 5778888887554446777888899999999988553 112333444 7789999999887763111 0023444
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCC---CcEEEccCCccccCCCh---hhhhcC-Ccccccc-cccccccccccCC
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKS---LVYLDLSNNQLQGPTPD---YAFRNM-TSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~---L~~L~Ls~n~l~~~~~~---~~~~~l-~~L~~L~-~~n~l~~~~~~~l 162 (466)
+++|++|++++|.+....+..+..+ .. |++|++++|.+.+.... ..+..+ ++|+.|+ +.|.+++.....+
T Consensus 80 -~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 -GCGLQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred -cCceeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 7789999999998876666666665 45 99999999987632111 034455 7788888 8887774322223
Q ss_pred CccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEec
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFML 237 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 237 (466)
+ ..+..+++|++|++++|.+++ ++..+...++|++|++++|.+++.....+...+... ++|++|++
T Consensus 158 ~-------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~--~~L~~L~l 228 (319)
T cd00116 158 A-------KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL--KSLEVLNL 228 (319)
T ss_pred H-------HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc--CCCCEEec
Confidence 3 456777889999999998874 334456667999999999988765544443332222 57999999
Q ss_pred CCccccccCCCCcccccccCccc-CCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhh
Q 047429 238 QNNMLSGSLPGVTELDGTFPKQF-CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 238 ~~n~l~~~~~~~~~l~~~lp~~~-~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
++|.+++.... .+...+ ...+.|+.|++++|.+.-. . ...+...+..+++|+++++++|.++......
T Consensus 229 s~n~l~~~~~~------~l~~~~~~~~~~L~~L~l~~n~i~~~--~-~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 229 GDNNLTDAGAA------ALASALLSPNISLLTLSLSCNDITDD--G-AKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCCcCchHHHH------HHHHHHhccCCCceEEEccCCCCCcH--H-HHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 99988742110 111111 1347899999998655100 0 0123344556688999999999998654333
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-19 Score=171.03 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=139.5
Q ss_pred EEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc--cccccccCCCCCccEEEcCCCCCCc------hhhhhh
Q 047429 42 SLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY--RSHSLVNSSSSSLTHLHLSLCGLSN------SAYHCL 113 (466)
Q Consensus 42 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l 113 (466)
.|+|..+.+++.. |...+.. +..|++|+++++.++.... ....+.. .+++++++++++.+.+ ..+..+
T Consensus 2 ~l~L~~~~l~~~~-~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTER-ATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRP--QPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccc-hHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhh--CCCceEEeccccccCCcchHHHHHHHHH
Confidence 4678888876432 2434444 8889999999998865321 1122334 6779999999998762 234456
Q ss_pred hcccCCCcEEEccCCccccCCChhhhhcCCc---ccccc-cccccccccccCCCccccCccccccCC-CccCEEecCCCc
Q 047429 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTS---LASLT-SLNYITGISKCSLPITLVRPKYAFSNV-TSLMDLDLSKNQ 188 (466)
Q Consensus 114 ~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~---L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l-~~L~~L~Ls~n~ 188 (466)
..+ ++|+.|++++|.+.+..+. .+..+.. |++|+ +.|.++..+...+. ..+..+ ++|++|++++|.
T Consensus 78 ~~~-~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-------~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 78 TKG-CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLA-------KGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred Hhc-CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHH-------HHHHhCCCCceEEEcCCCc
Confidence 666 8999999999998755554 5555544 77777 66666532211122 234455 677777777777
Q ss_pred CCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCC
Q 047429 189 ITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRP 263 (466)
Q Consensus 189 l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l 263 (466)
++. ++..+..+++|++|++++|.+++.....+...+... ++|+.|++++|.+++.... .++..+..+
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~------~l~~~~~~~ 220 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN--CNLEVLDLNNNGLTDEGAS------ALAETLASL 220 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC--CCCCEEeccCCccChHHHH------HHHHHhccc
Confidence 763 333455566777777777776643222111111100 3577777777766532211 233445556
Q ss_pred CCCcEEeCCCCeeeeecccccccCCCCC-----CCCCCccEEEccCCCCC
Q 047429 264 SSLVELDLESNQLWLRFNHINGSATPKL-----CSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 264 ~~L~~L~L~~n~l~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~N~l~ 308 (466)
++|++|++++|.+ ++.....+ ...+.|+.|++++|.++
T Consensus 221 ~~L~~L~ls~n~l-------~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 221 KSLEVLNLGDNNL-------TDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CCCCEEecCCCcC-------chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 6777777776543 21111111 12356777777777665
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-17 Score=137.15 Aligned_cols=121 Identities=24% Similarity=0.410 Sum_probs=52.3
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccc
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGT 255 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~ 255 (466)
+.++..|.+++|+++.+|..++.+.+|+.|++++|+++. .|....++ +.|+.|+++-|++. .
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl------~klr~lnvgmnrl~-----------~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSL------PKLRILNVGMNRLN-----------I 93 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhc------hhhhheecchhhhh-----------c
Confidence 334444444445444444444444444444444444442 22222222 33444444444444 4
Q ss_pred cCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 256 FPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 256 lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+|..|+.++.|+.|||+.|.+ | ...+|..|..+..|+-|+|+.|.+. .+|..++++++|
T Consensus 94 lprgfgs~p~levldltynnl----~--e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l 152 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNL----N--ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL 152 (264)
T ss_pred CccccCCCchhhhhhcccccc----c--cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence 444444444444444444322 1 1233444444444444444444443 344444444333
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-17 Score=135.43 Aligned_cols=162 Identities=27% Similarity=0.427 Sum_probs=125.5
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
.+++.|.||+|+++ ..|. .++.+.+|+.|+ .+|+++. +| ..++.+++|+.|+++-|++..+|..|
T Consensus 33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie~-----lp-------~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIEE-----LP-------TSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhhh-----cC-------hhhhhchhhhheecchhhhhcCcccc
Confidence 55666666666666 3343 566666666666 6666655 44 56778888888999888888888899
Q ss_pred CCCCCcCEEEeeCCcCCC-ccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 197 GDMCCLKTLKIHDNILTA-KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
+.++.|+.||+.+|.+.. ..|+.|..+ ..|+.|+++.|.+. .+|...+++++|+.|.+..|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m------~tlralyl~dndfe-----------~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYM------TTLRALYLGDNDFE-----------ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHH------HHHHHHHhcCCCcc-----------cCChhhhhhcceeEEeeccCc
Confidence 999999999999888764 456666555 56888999999998 788889999999999999876
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhh
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 319 (466)
+ -.+|..++.++.|++|.+.+|+++ .+|..++++.
T Consensus 162 l--------l~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 162 L--------LSLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred h--------hhCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 5 478889999999999999999998 5666666654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-14 Score=128.74 Aligned_cols=224 Identities=22% Similarity=0.250 Sum_probs=148.8
Q ss_pred ccCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCcc-------c-hHHHHhcCCCCCCEEEcCCCCC
Q 047429 9 HISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT-------D-WLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~-------~-~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
+..+..++.++||+|.+..... ...++..++|+..++|+--..... . +...+.. +++|++||||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG-CPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc-CCceeEeecccccc
Confidence 4567889999999999875433 134567788999998875433221 1 1223334 78999999999988
Q ss_pred CCCCc--cccccccCCCCCccEEEcCCCCCCchhhhhhhc------------ccCCCcEEEccCCccccCCCh---hhhh
Q 047429 78 PKINY--RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH------------ISKSLVYLDLSNNQLQGPTPD---YAFR 140 (466)
Q Consensus 78 ~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------------l~~~L~~L~Ls~n~l~~~~~~---~~~~ 140 (466)
..-.+ ...-+.. +..|++|.|.+|++.......++. -.+.|+++...+|++...... ..|.
T Consensus 105 G~~g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 105 GPKGIRGLEELLSS--CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred CccchHHHHHHHHh--ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 65433 1112334 789999999999997544333322 016789999999988643221 1344
Q ss_pred cCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCC
Q 047429 141 NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 141 ~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
..+.|+.+. ..|.|...+...+. ..+..+++|+.|||..|-++. +...+..+++|+.|++++|.+..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~-------eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALA-------EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred hccccceEEEecccccCchhHHHH-------HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 566777777 77766554332223 567778888888888887765 44567777788888888888877
Q ss_pred ccchhhhhccccccccccceEecCCcccc
Q 047429 215 KLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.....+...+.... ++|+++.+.+|.++
T Consensus 256 ~Ga~a~~~al~~~~-p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 256 EGAIAFVDALKESA-PSLEVLELAGNEIT 283 (382)
T ss_pred ccHHHHHHHHhccC-CCCceeccCcchhH
Confidence 76666665544443 36777777777776
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-13 Score=123.68 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=148.6
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+++++|+.+.|.+..+...........|++++.||||+|-+..... ...+...+|+|+.|+++.|.+...... ..-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISS-NTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccc-cchhh
Confidence 4778899999998887755432467789999999999998887743 334444599999999999988754432 11223
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
++.|+.|.++.|+++......+...+++|+.|+|..|........ ....++.|++|+ +.|.+...+. .
T Consensus 196 --l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~--~------ 264 (505)
T KOG3207|consen 196 --LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQ--G------ 264 (505)
T ss_pred --hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccc--c------
Confidence 788999999999998554444333239999999999953323322 455678889999 8887766532 1
Q ss_pred ccccccCCCccCEEecCCCcCCC--CCcc-----cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG--IPKS-----FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~--~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
...+.++.|..|+++.+.+.+ .|+. ....++|++|++..|++... +. +... ...++|+.|.+..|.
T Consensus 265 --~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~s-l~~l---~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 265 --YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RS-LNHL---RTLENLKHLRITLNY 337 (505)
T ss_pred --cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cc-cchh---hccchhhhhhccccc
Confidence 245678888999999998888 4443 34578899999999988421 11 1111 011467888887887
Q ss_pred cc
Q 047429 242 LS 243 (466)
Q Consensus 242 l~ 243 (466)
++
T Consensus 338 ln 339 (505)
T KOG3207|consen 338 LN 339 (505)
T ss_pred cc
Confidence 76
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-13 Score=132.37 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=141.9
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 143 (466)
+..-...||+.|++..++.. +.. +-.|+.+.|..|.+. .+|..++.+ ..|++|+|+.|+++ ..|. .++.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~---~~~--f~~Le~liLy~n~~r-~ip~~i~~L-~~lt~l~ls~NqlS-~lp~-~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE---ACA--FVSLESLILYHNCIR-TIPEAICNL-EALTFLDLSSNQLS-HLPD-GLCDLP 144 (722)
T ss_pred ccchhhhhccccccccCchH---HHH--HHHHHHHHHHhccce-ecchhhhhh-hHHHHhhhccchhh-cCCh-hhhcCc
Confidence 55556678888888777653 222 445777788888776 567777777 78888888888887 5666 666665
Q ss_pred cccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 144 SLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 144 ~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
|+.|- ++|+++. +| ..++...+|.+||.+.|.+..+|..+.++.+|+.|.++.|++...+++ ...
T Consensus 145 -Lkvli~sNNkl~~-----lp-------~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~ 210 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTS-----LP-------EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS 210 (722)
T ss_pred -ceeEEEecCcccc-----CC-------cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhC
Confidence 67777 7777766 45 567777888889999999888888888888999999998888755544 334
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC---CCCCccE
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC---SSPMLQV 299 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~---~l~~L~~ 299 (466)
+ .|.+||++.|++. .+|..|.+|+.|++|-|.+|.+ ...|..++ ..+-.++
T Consensus 211 L-------pLi~lDfScNkis-----------~iPv~fr~m~~Lq~l~LenNPL--------qSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 211 L-------PLIRLDFSCNKIS-----------YLPVDFRKMRHLQVLQLENNPL--------QSPPAQICEKGKVHIFKY 264 (722)
T ss_pred C-------ceeeeecccCcee-----------ecchhhhhhhhheeeeeccCCC--------CCChHHHHhccceeeeee
Confidence 3 4889999999998 8888899999999999998776 34443332 3344566
Q ss_pred EEccCC
Q 047429 300 LDFSHN 305 (466)
Q Consensus 300 L~Ls~N 305 (466)
|+..-+
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-12 Score=120.08 Aligned_cols=232 Identities=21% Similarity=0.195 Sum_probs=155.3
Q ss_pred EeCCCccccccchHHHh----hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 18 INIGLNAIRVRKFDQWL----SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 18 L~Ls~n~i~~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
+.+++-.+...++ ..+ +++.+|++..|.++.+.... .....+.+++++.|||+.|-+..+.+....... ++
T Consensus 98 ~si~nK~vE~iGf-Dki~akQsn~kkL~~IsLdn~~V~~~~--~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq--Lp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGF-DKIAAKQSNLKKLREISLDNYRVEDAG--IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ--LP 172 (505)
T ss_pred hhhcCceeEEecH-HHHHHHhhhHHhhhheeecCccccccc--hhhhhhhCCcceeecchhhhHHhHHHHHHHHHh--cc
Confidence 4445555555555 222 35788999999999887653 213444599999999999999888764333444 99
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|+.|+++.|++............++|+.|.|+.|+++..........+++|+.|. ..|..... -. ..
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----~~-------~~ 241 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----KA-------TS 241 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----ec-------ch
Confidence 99999999998864322222222288999999999998543333556789999999 66642111 11 23
Q ss_pred ccCCCccCEEecCCCcCCCCC--cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 173 FSNVTSLMDLDLSKNQITGIP--KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..-+..|++|||++|.+...+ ...+.++.|..|+++.|++.+.-.......-.....++|+.|++..|++.
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~------- 314 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR------- 314 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-------
Confidence 455788999999999988865 35678899999999999887532111111100011257899999999886
Q ss_pred ccccccC--cccCCCCCCcEEeCCCCee
Q 047429 251 ELDGTFP--KQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 251 ~l~~~lp--~~~~~l~~L~~L~L~~n~l 276 (466)
+.+ ..+..+++|+.|.+..|.+
T Consensus 315 ----~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 315 ----DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ----cccccchhhccchhhhhhcccccc
Confidence 222 2244556677777667655
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-11 Score=121.39 Aligned_cols=170 Identities=28% Similarity=0.414 Sum_probs=78.7
Q ss_pred EEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC-cccccc-cccccccccccCCCccccCcccccc
Q 047429 97 HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT-SLASLT-SLNYITGISKCSLPITLVRPKYAFS 174 (466)
Q Consensus 97 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~ 174 (466)
.+++..+.+... ...+... +.++.|++.+|.+.. ++. ...... +|+.|+ +.|.+... | ..+.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~-~~l~~L~l~~n~i~~-i~~-~~~~~~~nL~~L~l~~N~i~~l-----~-------~~~~ 160 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLEL-TNLTSLDLDNNNITD-IPP-LIGLLKSNLKELDLSDNKIESL-----P-------SPLR 160 (394)
T ss_pred eeeccccccccC-chhhhcc-cceeEEecCCccccc-Ccc-ccccchhhcccccccccchhhh-----h-------hhhh
Confidence 355555554322 1222333 456666666666652 332 233332 555555 55554442 1 2344
Q ss_pred CCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccc
Q 047429 175 NVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDG 254 (466)
Q Consensus 175 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 254 (466)
.+++|+.|++++|++..+|......+.|+.|++++|++....+.. .. +..|+++.+++|++.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~------~~~L~~l~~~~N~~~----------- 222 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-EL------LSALEELDLSNNSII----------- 222 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hh------hhhhhhhhhcCCcce-----------
Confidence 555555555555555555444334555555555555554322221 00 012555555555432
Q ss_pred ccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 255 TFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 255 ~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
..+..+..+..+..+.+.+|++ ...+..++.++.+++|++++|.++
T Consensus 223 ~~~~~~~~~~~l~~l~l~~n~~--------~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 223 ELLSSLSNLKNLSGLELSNNKL--------EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ecchhhhhcccccccccCCcee--------eeccchhccccccceecccccccc
Confidence 3333444455555555555443 222444455555555555555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-12 Score=124.79 Aligned_cols=199 Identities=24% Similarity=0.310 Sum_probs=158.3
Q ss_pred EEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 70 LDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 70 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
|.|++-++...+-.... .. +.--...+++.|++. ..|..+..+ ..|+.+.|..|.+. .+|. .++++..|..++
T Consensus 55 l~Ls~rrlk~fpr~a~~-~~--ltdt~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~-~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS-YD--LTDTVFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPE-AICNLEALTFLD 127 (722)
T ss_pred cccccchhhcCCCcccc-cc--ccchhhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecch-hhhhhhHHHHhh
Confidence 45555555544432122 23 666778899999998 567777777 78999999999998 7888 899999999999
Q ss_pred -cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 150 -SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 150 -~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
+.|.++. +| ..+..++ |+.|-+++|+++.+|..++..+.|..||.+.|.+....+ ....+
T Consensus 128 ls~NqlS~-----lp-------~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l----- 188 (722)
T KOG0532|consen 128 LSSNQLSH-----LP-------DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYL----- 188 (722)
T ss_pred hccchhhc-----CC-------hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhH-----
Confidence 9998876 44 3444444 899999999999999999989999999999999985444 34444
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+|+.|.+..|++. .+|..+. .-.|..||+++|++ ..+|..|++++.|++|-|.+|.+.
T Consensus 189 -~slr~l~vrRn~l~-----------~lp~El~-~LpLi~lDfScNki--------s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 189 -TSLRDLNVRRNHLE-----------DLPEELC-SLPLIRLDFSCNKI--------SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -HHHHHHHHhhhhhh-----------hCCHHHh-CCceeeeecccCce--------eecchhhhhhhhheeeeeccCCCC
Confidence 46999999999998 7888777 45788999999877 689999999999999999999998
Q ss_pred CCchhhhh
Q 047429 309 GMVPTCLN 316 (466)
Q Consensus 309 ~~~p~~~~ 316 (466)
..|..+.
T Consensus 248 -SPPAqIC 254 (722)
T KOG0532|consen 248 -SPPAQIC 254 (722)
T ss_pred -CChHHHH
Confidence 5665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-11 Score=104.87 Aligned_cols=133 Identities=25% Similarity=0.242 Sum_probs=48.2
Q ss_pred ccccccccCCcCCcEEeCCCccccccchHHHhh-cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCC
Q 047429 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLS-YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 81 (466)
|.++.-+.+..++++|+|++|.|+.+. .+. .+.+|+.|++++|.|+.+. .+.. ++.|++|++++|.|+.+.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l~----~l~~-L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKLE----GLPG-LPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T----T-----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccccccccccccc---chhhhhcCCCEEECCCCCCcccc----CccC-hhhhhhcccCCCCCCccc
Confidence 455566677778899999999988652 344 5788999999999998873 3444 889999999999998775
Q ss_pred ccccccccCCCCCccEEEcCCCCCCchh-hhhhhcccCCCcEEEccCCccccCCCh---hhhhcCCcccccc
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLSHISKSLVYLDLSNNQLQGPTPD---YAFRNMTSLASLT 149 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~ 149 (466)
. ..... +++|++|++++|+|.... -..+..+ ++|++|++.+|.+... +. ..+..+++|+.|+
T Consensus 81 ~--~l~~~--lp~L~~L~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 81 E--GLDKN--LPNLQELYLSNNKISDLNELEPLSSL-PKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp H--HHHHH---TT--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred c--chHHh--CCcCCEEECcCCcCCChHHhHHHHcC-CCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 4 12234 789999999999886532 2456667 8999999999988743 32 2355677777776
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-11 Score=103.94 Aligned_cols=129 Identities=26% Similarity=0.225 Sum_probs=40.5
Q ss_pred hhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhh
Q 047429 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCL 113 (466)
Q Consensus 34 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 113 (466)
+.+..++++|+|.+|.|+.+. .+...+.+|+.|++++|.|+.+.. +.. ++.|++|++++|+++...+...
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie----~L~~~l~~L~~L~Ls~N~I~~l~~----l~~--L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE----NLGATLDKLEVLDLSNNQITKLEG----LPG--LPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccc----chhhhhcCCCEEECCCCCCccccC----ccC--hhhhhhcccCCCCCCccccchH
Confidence 344455677777777776652 122125677777777777766532 333 6667777777777765432222
Q ss_pred hcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC
Q 047429 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP 193 (466)
Q Consensus 114 ~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 193 (466)
..+ ++|++|++++|++..... + ..+..+++|++|++.+|.+...+
T Consensus 85 ~~l-p~L~~L~L~~N~I~~l~~--------------------------l--------~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 85 KNL-PNLQELYLSNNKISDLNE--------------------------L--------EPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp HH--TT--EEE-TTS---SCCC--------------------------C--------GGGGG-TT--EEE-TT-GGGGST
T ss_pred HhC-CcCCEEECcCCcCCChHH--------------------------h--------HHHHcCCCcceeeccCCcccchh
Confidence 234 667777777776652110 1 24456677888888888776633
Q ss_pred c----ccCCCCCcCEEEe
Q 047429 194 K----SFGDMCCLKTLKI 207 (466)
Q Consensus 194 ~----~l~~l~~L~~L~L 207 (466)
. .+..+|+|+.||-
T Consensus 130 ~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 130 NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp THHHHHHHH-TT-SEETT
T ss_pred hHHHHHHHHcChhheeCC
Confidence 2 3556777777764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-13 Score=121.08 Aligned_cols=259 Identities=20% Similarity=0.230 Sum_probs=154.2
Q ss_pred CCCccEEEcCCCCCCchhh----hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCcccc
Q 047429 92 SSSLTHLHLSLCGLSNSAY----HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~ 167 (466)
+.+++++++++|.+..... ..+... ++|+..++++- ++|.... .+|..+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~-ftGR~~~------------------------Ei~e~L~ 82 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDM-FTGRLKD------------------------EIPEALK 82 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhh-hcCCcHH------------------------HHHHHHH
Confidence 5677788888887764333 334444 56666666642 2221111 1221111
Q ss_pred CccccccCCCccCEEecCCCcCCC--CC---cccCCCCCcCEEEeeCCcCCCccchhhhh-------ccccccccccceE
Q 047429 168 RPKYAFSNVTSLMDLDLSKNQITG--IP---KSFGDMCCLKTLKIHDNILTAKLPELFLN-------FSAGCAKKSLQSF 235 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n~l~~--~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------~~~~~~~~~L~~L 235 (466)
.+..++..+++|++|+||.|.+.. ++ +.+..+..|++|.|.+|.+.......... .-....++.|+++
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 112456667788888888888765 22 24566788888888888775333332111 1111233568888
Q ss_pred ecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc-cCCCCCCCCCCccEEEccCCCCCCCc---
Q 047429 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING-SATPKLCSSPMLQVLDFSHNNISGMV--- 311 (466)
Q Consensus 236 ~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 311 (466)
...+|++...... .+...|...+.|+.+.++.|.| ..=.. .+...+..+++|+.|||..|-++...
T Consensus 163 i~~rNrlen~ga~------~~A~~~~~~~~leevr~~qN~I----~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 163 ICGRNRLENGGAT------ALAEAFQSHPTLEEVRLSQNGI----RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred EeeccccccccHH------HHHHHHHhccccceEEEecccc----cCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 8888887632211 2334466677888888888765 11100 22345678888888888888887443
Q ss_pred -hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecc---cchhhhccCCCcEEECCCCcCCcCCcHHHHh
Q 047429 312 -PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPI---DSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387 (466)
Q Consensus 312 -p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~ 387 (466)
...+..|++|+.++.+.+.... .|. ........+.|+.|.+.+|.++-.-...
T Consensus 233 LakaL~s~~~L~El~l~dcll~~--------------------~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~--- 289 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLEN--------------------EGAIAFVDALKESAPSLEVLELAGNEITRDAALA--- 289 (382)
T ss_pred HHHHhcccchheeeccccccccc--------------------ccHHHHHHHHhccCCCCceeccCcchhHHHHHHH---
Confidence 3456667777777755544320 111 1122235788999999999988322221
Q ss_pred hccCCCcccccCCCCCCeeeccCCcCc
Q 047429 388 LLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 388 l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..++...+.|..|+|++|.+.
T Consensus 290 -----la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 290 -----LAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred -----HHHHHhcchhhHHhcCCccccc
Confidence 2224567899999999999994
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-11 Score=116.03 Aligned_cols=204 Identities=30% Similarity=0.400 Sum_probs=142.5
Q ss_pred ccccCCcCCc---EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC-CCCEEEcCCCCCCCCCc
Q 047429 7 GFHISLEDLQ---SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP-SLRELDLSSSAPPKINY 82 (466)
Q Consensus 7 ~~~~~l~~L~---~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 82 (466)
+....+..+. .++++.|.+.... ..+..++.++.|++.+|.++.+ +..... +. +|+.|++++|.+...+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i---~~~~~~-~~~nL~~L~l~~N~i~~l~~ 157 (394)
T COG4886 84 DGSENLLNLLPLPSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDI---PPLIGL-LKSNLKELDLSDNKIESLPS 157 (394)
T ss_pred cccccccCCCCCceeeccccccccCc--hhhhcccceeEEecCCcccccC---cccccc-chhhcccccccccchhhhhh
Confidence 3344444444 5777777763322 3455667888999999888887 333333 53 88899999998887642
Q ss_pred cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
.+.. +++|+.|++++|+++.. +...... +.|+.|++++|.+. .+|. .......|+++. +.|.+..
T Consensus 158 ---~~~~--l~~L~~L~l~~N~l~~l-~~~~~~~-~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~----- 223 (394)
T COG4886 158 ---PLRN--LPNLKNLDLSFNDLSDL-PKLLSNL-SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIE----- 223 (394)
T ss_pred ---hhhc--cccccccccCCchhhhh-hhhhhhh-hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCccee-----
Confidence 3455 88899999999988843 4443355 78888999999887 5555 445566688888 7774322
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
.+ ..+..+.++..+.+.+|++..++..++.++++++|++++|.++...+ +... .+++.|++++|.
T Consensus 224 ~~-------~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~------~~l~~L~~s~n~ 288 (394)
T COG4886 224 LL-------SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSL------TNLRELDLSGNS 288 (394)
T ss_pred cc-------hhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--cccc------CccCEEeccCcc
Confidence 22 46777888888888888888777778888889999999988875544 3332 468888888888
Q ss_pred cccc
Q 047429 242 LSGS 245 (466)
Q Consensus 242 l~~~ 245 (466)
+...
T Consensus 289 ~~~~ 292 (394)
T COG4886 289 LSNA 292 (394)
T ss_pred cccc
Confidence 8743
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-11 Score=105.01 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=91.0
Q ss_pred cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 196 FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 196 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
...++.|+.+||++|.|+..... ..-. |.++.|++++|.+. .+.. +..+++|+.|||++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDES-vKL~------Pkir~L~lS~N~i~-----------~v~n-La~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDES-VKLA------PKLRRLILSQNRIR-----------TVQN-LAELPQLQLLDLSGNL 340 (490)
T ss_pred cchHhhhhhccccccchhhhhhh-hhhc------cceeEEecccccee-----------eehh-hhhcccceEeecccch
Confidence 34456788888888887643322 1111 56888888888886 3333 7778888888888866
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeec
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKP 355 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (466)
+ ..+..+-..+.+.+.|.|+.|.+. .++.+.+|-
T Consensus 341 L--------s~~~Gwh~KLGNIKtL~La~N~iE-----~LSGL~KLY--------------------------------- 374 (490)
T KOG1259|consen 341 L--------AECVGWHLKLGNIKTLKLAQNKIE-----TLSGLRKLY--------------------------------- 374 (490)
T ss_pred h--------HhhhhhHhhhcCEeeeehhhhhHh-----hhhhhHhhh---------------------------------
Confidence 5 234444456777888888888875 234443331
Q ss_pred ccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 356 IDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 356 ~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
+|..||+++|+|. .+.+ -.+++++|-|+++.|-+|.+. .+|+
T Consensus 375 ----------SLvnLDl~~N~Ie-~lde----------V~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 375 ----------SLVNLDLSSNQIE-ELDE----------VNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred ----------hheeccccccchh-hHHH----------hcccccccHHHHHhhcCCCcc-ccch
Confidence 2277889999887 2221 124788889999999999987 4554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=113.22 Aligned_cols=114 Identities=31% Similarity=0.545 Sum_probs=79.0
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
++.|+|++|.++| .+|..+..+++|+.|+|++ |.+.|.+|..++.+++|+.|+|++|.++|.+
T Consensus 420 v~~L~L~~n~L~g----------~ip~~i~~L~~L~~L~Ls~-------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 420 IDGLGLDNQGLRG----------FIPNDISKLRHLQSINLSG-------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEECCCCCccc----------cCCHHHhCCCCCCEEECCC-------CcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 5667777776664 3445567777777777777 4455677777777777777777777777777
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
|..++++++| +.|+|++|+++|.+|..++.
T Consensus 483 P~~l~~L~~L----------------------------------------------~~L~Ls~N~l~g~iP~~l~~---- 512 (623)
T PLN03150 483 PESLGQLTSL----------------------------------------------RILNLNGNSLSGRVPAALGG---- 512 (623)
T ss_pred chHHhcCCCC----------------------------------------------CEEECcCCcccccCChHHhh----
Confidence 7776665555 88999999999877765432
Q ss_pred CCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 392 KIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 392 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
...++..+++++|...+..|.
T Consensus 513 -------~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 513 -------RLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred -------ccccCceEEecCCccccCCCC
Confidence 124566788888876555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-10 Score=104.12 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=77.4
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccc
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 253 (466)
...+.|+++||++|.|+.+.+...-.|.++.|++++|.+..... ...+ ++|+.|||++|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L------~~L~~LDLS~N~Ls---------- 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAEL------PQLQLLDLSGNLLA---------- 342 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhc------ccceEeecccchhH----------
Confidence 34566888888888888877777777888888888888874332 2222 46888888888887
Q ss_pred cccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 254 ~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+..+-..+-+++.|.|++|.| .....++.+-+|.+||+++|+|.
T Consensus 343 -~~~Gwh~KLGNIKtL~La~N~i---------E~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 343 -ECVGWHLKLGNIKTLKLAQNKI---------ETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred -hhhhhHhhhcCEeeeehhhhhH---------hhhhhhHhhhhheeccccccchh
Confidence 4444555677788888888766 33345667778888888888876
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-10 Score=114.80 Aligned_cols=250 Identities=26% Similarity=0.291 Sum_probs=118.8
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
+..++.+++..|.+... . ..+..+++|+.|++.+|.|..+. ..+.. +++|++|++++|.|+.+.+ +..
T Consensus 71 l~~l~~l~l~~n~i~~~-~-~~l~~~~~l~~l~l~~n~i~~i~---~~l~~-~~~L~~L~ls~N~I~~i~~----l~~-- 138 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI-L-NHLSKLKSLEALDLYDNKIEKIE---NLLSS-LVNLQVLDLSFNKITKLEG----LST-- 138 (414)
T ss_pred hHhHHhhccchhhhhhh-h-cccccccceeeeeccccchhhcc---cchhh-hhcchheeccccccccccc----hhh--
Confidence 44455555555555431 1 23455666666666666665552 11233 5666666666666665533 222
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++.|+.|++++|.++.. ..+..+ +.|+.+++++|.+....+.. ...+.+++.+. ..|.+...
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i------------- 201 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI------------- 201 (414)
T ss_pred ccchhhheeccCcchhc--cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-------------
Confidence 44566666666666532 223334 55666666666655322200 24455555555 55555443
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCC--CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMC--CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+..+..+..+++..|.+..+.. +..+. +|+.+++++|.+.... .....+ ..+..+++..|++...
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~------~~l~~l~~~~n~~~~~--- 270 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSP-EGLENL------KNLPVLDLSSNRISNL--- 270 (414)
T ss_pred cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccc-cccccc------ccccccchhhcccccc---
Confidence 233344444444555555554311 11222 2556666666554321 111111 2355555555555411
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC-CCCCCCCccEEEccCCCCCCCchhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP-KLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
..+.....+..+....|.+ -........ .....+.++.+.+..|.+....+..
T Consensus 271 ---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 271 ---------EGLERLPKLSELWLNDNKL----ALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred ---------ccccccchHHHhccCcchh----cchhhhhccccccccccccccccccCccccccccc
Confidence 0122233333444444333 000011111 2456677888888888877655533
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-10 Score=111.77 Aligned_cols=225 Identities=25% Similarity=0.238 Sum_probs=160.7
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..+..+++++.|++.+|.|.... ..+..+++|++|++++|.|+.+. .+.. ++.|+.|++++|.+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~--~~l~~~~~L~~L~ls~N~I~~i~----~l~~-l~~L~~L~l~~N~i~~~~~---- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIE--NLLSSLVNLQVLDLSFNKITKLE----GLST-LTLLKELNLSGNLISDISG---- 157 (414)
T ss_pred cccccccceeeeeccccchhhcc--cchhhhhcchheecccccccccc----chhh-ccchhhheeccCcchhccC----
Confidence 34788999999999999998763 23788999999999999999874 3444 7789999999999987743
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. ++.|+.+++++|++....+.....+ .+++.+.+.+|.+.... .+..+..+..++ ..|.++..
T Consensus 158 ~~~--l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~-------- 223 (414)
T KOG0531|consen 158 LES--LKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKL-------- 223 (414)
T ss_pred Ccc--chhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhccc---chHHHHHHHHhhcccccceec--------
Confidence 444 8899999999999986655104555 88999999999987332 334445555556 66766654
Q ss_pred ccCccccccCCCc--cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 166 LVRPKYAFSNVTS--LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 166 ~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+.. |+.+++++|.+..++..+..+..+..|++..|++........ ...+..+....|.+.
T Consensus 224 -----~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~--------~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 224 -----EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLER--------LPKLSELWLNDNKLA 290 (414)
T ss_pred -----cCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccc--------cchHHHhccCcchhc
Confidence 23333443 899999999999876778889999999999998875433211 134566666666665
Q ss_pred ccCCCCcccccccCc-ccCCCCCCcEEeCCCCee
Q 047429 244 GSLPGVTELDGTFPK-QFCRPSSLVELDLESNQL 276 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l 276 (466)
.... .... .....+.++.+.+..|.+
T Consensus 291 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 291 LSEA-------ISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred chhh-------hhccccccccccccccccccCcc
Confidence 2211 1111 144556777777777654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-09 Score=110.56 Aligned_cols=124 Identities=28% Similarity=0.268 Sum_probs=75.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC--CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD--LREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
...+.+.+-+|.+.... .-..++.|++|-+.+|. +..+ ...++..++.|++|||++|.-....| ..++.
T Consensus 523 ~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~- 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGE- 593 (889)
T ss_pred hheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCC--hHHhh-
Confidence 45566666666654321 12234467777777775 3333 44445557777777777665333333 35566
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
+-+|++|++++..+. ..|..+.++ +.|.+|++..+.-....+. ....+.+|++|.
T Consensus 594 -Li~LryL~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 594 -LVHLRYLDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLR 648 (889)
T ss_pred -hhhhhcccccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEE
Confidence 677777777777776 567777777 7777777777665444444 555577777776
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=103.11 Aligned_cols=105 Identities=28% Similarity=0.282 Sum_probs=78.4
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
.++.|+|++|.+.+.. +..+.. +++|+.|+|++|.+.+..+ ..+.. +++|+.|+|++|.+++..|..+..+ +
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~i~~-L~~L~~L~Ls~N~l~g~iP--~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L-~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PNDISK-LRHLQSINLSGNSIRGNIP--PSLGS--ITSLEVLDLSYNSFNGSIPESLGQL-T 490 (623)
T ss_pred EEEEEECCCCCccccC--CHHHhC-CCCCCEEECCCCcccCcCC--hHHhC--CCCCCEEECCCCCCCCCCchHHhcC-C
Confidence 3778888888887653 556666 8888888888888876655 45666 8888888888888888888888888 8
Q ss_pred CCcEEEccCCccccCCChhhhhcC-Ccccccc-ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNM-TSLASLT-SLN 152 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~-~~n 152 (466)
+|++|+|++|.+.+.+|. .+... .++..++ ..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCEEECcCCcccccCCh-HHhhccccCceEEecCC
Confidence 888888888888888887 66543 3445555 444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-09 Score=72.45 Aligned_cols=61 Identities=26% Similarity=0.316 Sum_probs=40.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
++|++|++++|+++...+ ..|.++++|++|++++|.++.+ +...+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence 456777777777776555 6677777777777777777666 333444477777777777653
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-08 Score=71.44 Aligned_cols=61 Identities=39% Similarity=0.509 Sum_probs=38.3
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
|+|++|++++|.++.+++ ..+.. +++|++|++++|.++...+..|.++ ++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~--~~f~~--l~~L~~L~l~~N~l~~i~~~~f~~l-~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP--DSFSN--LPNLETLDLSNNNLTSIPPDAFSNL-PNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT--TTTTT--GTTESEEEETSSSESEEETTTTTTS-TTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH--HHHcC--CCCCCEeEccCCccCccCHHHHcCC-CCCCEEeCcCCcC
Confidence 356666666666666555 45555 6666666666666666666666666 6666666666653
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.4e-10 Score=99.57 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=114.2
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCC-cCCC--CC
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITG--IP 193 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~--~~ 193 (466)
+.|++|||++..++.....+.+..+.+|+.|. .++.+.+. +. ..+.+..+|+.|+|+.+ .+++ +.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----I~-------~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----IV-------NTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----HH-------HHHhccccceeeccccccccchhHHH
Confidence 45889999988877544443567788888888 77777765 33 56777889999999876 4555 22
Q ss_pred cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCC
Q 047429 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLES 273 (466)
Q Consensus 194 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~ 273 (466)
-.+.+++.|..|++++|.+........... +.++|+.|+++++.=.-.. ..+..-..++++|..|||++
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h----ise~l~~LNlsG~rrnl~~-------sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAH----ISETLTQLNLSGYRRNLQK-------SHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhh----hchhhhhhhhhhhHhhhhh-------hHHHHHHHhCCceeeecccc
Confidence 356788999999999998876554433333 2357888988877421000 01112245678888888888
Q ss_pred CeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhh
Q 047429 274 NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNN 317 (466)
Q Consensus 274 n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 317 (466)
| +.++......|..++.|++|.++.|- +++|+.+-.
T Consensus 323 ~------v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~ 358 (419)
T KOG2120|consen 323 S------VMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLE 358 (419)
T ss_pred c------cccCchHHHHHHhcchheeeehhhhc--CCChHHeee
Confidence 6 44554555567778888888888776 356665443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-08 Score=88.84 Aligned_cols=222 Identities=19% Similarity=0.177 Sum_probs=148.4
Q ss_pred CCcCCcEEeCCCccccccchHHH----hhcCCCCcEEEccCCCCCCccc--------hHHHHhcCCCCCCEEEcCCCCCC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQW----LSYHNKLTSLSLQGLDLREATD--------WLQVVITGLPSLRELDLSSSAPP 78 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~~l~~L~~L~Ls~n~l~ 78 (466)
.+..+..+|||+|.|..... .. ++.-.+|+..+++.--.....+ ....+.+ ||+|+..+||.|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccC
Confidence 46789999999999986654 44 3455778888888764433211 1334455 999999999999886
Q ss_pred CCCc--cccccccCCCCCccEEEcCCCCCCchhhhhhh-------------cccCCCcEEEccCCccccCCChh----hh
Q 047429 79 KINY--RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS-------------HISKSLVYLDLSNNQLQGPTPDY----AF 139 (466)
Q Consensus 79 ~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-------------~l~~~L~~L~Ls~n~l~~~~~~~----~~ 139 (466)
...+ ....+.. -..|++|.+++|++.......++ .- +.|++.....|++. ..+.. .+
T Consensus 106 ~~~~e~L~d~is~--~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRle-ngs~~~~a~~l 181 (388)
T COG5238 106 SEFPEELGDLISS--STDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLE-NGSKELSAALL 181 (388)
T ss_pred cccchHHHHHHhc--CCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhc-cCcHHHHHHHH
Confidence 5433 1122334 67899999999998754443333 22 77999999999987 33331 12
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCC
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..-..|+++. ..|.|...+...+. ...+..+.+|+.|||..|.++. +..++..++.|+.|.+..|-++
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~------~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLA------FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHH------HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 2224677777 77776554322111 0234567889999999998765 3456677788899999999888
Q ss_pred CccchhhhhccccccccccceEecCCccccc
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
......+...++....++|..|-..+|.+.+
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 7776666555444444678888888887653
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-08 Score=91.54 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
.++.|.+.++.|....+ ...+....+.++.+||.+|.|+++........+ +|.|+.|+++.|.+...+...=... .
T Consensus 46 a~ellvln~~~id~~gd-~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p~-~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGD-VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLPL-K 121 (418)
T ss_pred chhhheecCCCCCcchh-HHHHHHHhhhhhhhhcccchhccHHHHHHHHhc--CccceEeeccCCcCCCccccCcccc-c
Confidence 44456666666655543 233333366677777777777666553333444 6777777777776654321111233 5
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
+|++|-|.+..+.-......+..++.+++|. +.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6677777666654333222344555555555 444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-08 Score=102.66 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=58.6
Q ss_pred cCCcEEeCCCcc--ccccchHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 13 EDLQSINIGLNA--IRVRKFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 13 ~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
++|++|=+..|. +..... .+|..++.|++|||++|. +... |..+.. +-+||+|++++..+..++. .+.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~L---P~~I~~-Li~LryL~L~~t~I~~LP~---~l~~ 616 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKL---PSSIGE-LVHLRYLDLSDTGISHLPS---GLGN 616 (889)
T ss_pred CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcC---ChHHhh-hhhhhcccccCCCccccch---HHHH
Confidence 356666665554 333333 556666666666666552 2333 555555 6666666666666665544 4455
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ 129 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~ 129 (466)
+..|.+|++..+.-...++.....+ .+|++|.+..-.
T Consensus 617 --Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 617 --LKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSA 653 (889)
T ss_pred --HHhhheeccccccccccccchhhhc-ccccEEEeeccc
Confidence 5666666666655433344444455 666666665543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-08 Score=91.98 Aligned_cols=110 Identities=30% Similarity=0.392 Sum_probs=66.6
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l 92 (466)
.|++||||+-.|+....-..++.|.+|+.|.|.++++.+-. ...+.+ -.+|+.|+++.+. ++.... ...+.. +
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAk-N~~L~~lnlsm~sG~t~n~~-~ll~~s--c 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAK-NSNLVRLNLSMCSGFTENAL-QLLLSS--C 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHHhc-cccceeeccccccccchhHH-HHHHHh--h
Confidence 47777887777764433345667777777777777776542 445555 6778888877664 332221 123344 7
Q ss_pred CCccEEEcCCCCCCchhhh-hhhcccCCCcEEEccCCc
Q 047429 93 SSLTHLHLSLCGLSNSAYH-CLSHISKSLVYLDLSNNQ 129 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~~L~~L~Ls~n~ 129 (466)
+.|..|+++.|.+...... .+.+..++|+.|+++++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 7777777777776543322 223333567777777764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.9e-09 Score=102.66 Aligned_cols=125 Identities=26% Similarity=0.276 Sum_probs=69.6
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
.|.+.+.+.|.+..+.. ++.- ++.++.|+|++|+++.. ..+..+ +.|++|||+.|.+. ..|.....++. |
T Consensus 165 ~L~~a~fsyN~L~~mD~---SLql--l~ale~LnLshNk~~~v--~~Lr~l-~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE---SLQL--LPALESLNLSHNKFTKV--DNLRRL-PKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred hHhhhhcchhhHHhHHH---HHHH--HHHhhhhccchhhhhhh--HHHHhc-ccccccccccchhc-cccccchhhhh-h
Confidence 34455555555544332 2333 55666666666666543 245555 66666666666665 34432223333 6
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCC
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~ 213 (466)
+.|. .+|.++.+ ..+.++++|+.||+++|-+.+..+ .+..+..|+.|.|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL-------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh-------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666 66666654 456666666667777666655221 2344556666666666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.3e-07 Score=80.33 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCcEEeCCCccccccchHHHh-hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWL-SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
-++.|-+.++.|..+.....| ..++.+++|||.+|.|+...+ ...+...+|.|++|+++.|.+...... .-.. .
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~s~I~~--lp~p--~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLSSDIKS--LPLP--L 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCCCcccc--Cccc--c
Confidence 444666667777654432334 357889999999999998755 334555599999999999998765441 1134 7
Q ss_pred CCccEEEcCCCCCCchhhhh-hhcccCCCcEEEccCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHC-LSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~~L~~L~Ls~n~l~ 131 (466)
.+|++|-|.+..+....... +..+ +.++.|.++.|.+.
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~l-P~vtelHmS~N~~r 159 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDL-PKVTELHMSDNSLR 159 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcc-hhhhhhhhccchhh
Confidence 89999999999887544443 4455 88899999998543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-06 Score=56.42 Aligned_cols=37 Identities=38% Similarity=0.589 Sum_probs=31.6
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCC
Confidence 36799999999999 66667899999999999999998
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-07 Score=93.01 Aligned_cols=124 Identities=27% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.|.+.+.++|.+.... .++.-++.|+.|||++|+++.. ..+.. +++|++|||+.|.+..++. ..... +
T Consensus 165 ~L~~a~fsyN~L~~mD--~SLqll~ale~LnLshNk~~~v----~~Lr~-l~~LkhLDlsyN~L~~vp~--l~~~g--c- 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD--ESLQLLPALESLNLSHNKFTKV----DNLRR-LPKLKHLDLSYNCLRHVPQ--LSMVG--C- 232 (1096)
T ss_pred hHhhhhcchhhHHhHH--HHHHHHHHhhhhccchhhhhhh----HHHHh-cccccccccccchhccccc--cchhh--h-
Confidence 3555666666665322 5566667777777777777664 13333 7777777777777766654 22222 3
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
.|..|.+++|.++.. ..+.++ .+|+.||++.|-+.+...-..+..+..|+.|. .+|
T Consensus 233 ~L~~L~lrnN~l~tL--~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTL--RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hheeeeecccHHHhh--hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 377777777766543 334555 66777777777665432221334445555555 444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-06 Score=54.22 Aligned_cols=38 Identities=37% Similarity=0.610 Sum_probs=32.2
Q ss_pred CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCC
Q 047429 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
++|++|++++|+|+.+|..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999999988878999999999999999884
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.7e-07 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=17.6
Q ss_pred cCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 286 SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 286 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.+|..+..++.|+.|+++.|.+. ..|..+..+.++
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 44555555555555555555554 334444444444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-06 Score=78.37 Aligned_cols=242 Identities=22% Similarity=0.200 Sum_probs=140.7
Q ss_pred HHhhcCCCCcEEEccCCCCCCc-cchHHHHhcCCCCCCEEEcCCCCCCCCCc--------cccccccCCCCCccEEEcCC
Q 047429 32 QWLSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSLRELDLSSSAPPKINY--------RSHSLVNSSSSSLTHLHLSL 102 (466)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~~~l~~L~~L~Ls~ 102 (466)
..+.-+..+..++||+|-|... ..|.......-.+|+..+++.-....... ...++.. |+.|+..+||+
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk--cp~l~~v~LSD 101 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK--CPRLQKVDLSD 101 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc--CCcceeeeccc
Confidence 3455688899999999998664 22333333336788888887653322111 1123445 78999999999
Q ss_pred CCCCchhhhh----hhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCc
Q 047429 103 CGLSNSAYHC----LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178 (466)
Q Consensus 103 n~l~~~~~~~----l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~ 178 (466)
|.+....|.. +.+. +.|++|.+++|.+. .+...-++ +.|.+|- .| .-...-|.
T Consensus 102 NAfg~~~~e~L~d~is~~-t~l~HL~l~NnGlG-p~aG~rig--kal~~la-~n------------------KKaa~kp~ 158 (388)
T COG5238 102 NAFGSEFPEELGDLISSS-TDLVHLKLNNNGLG-PIAGGRIG--KALFHLA-YN------------------KKAADKPK 158 (388)
T ss_pred cccCcccchHHHHHHhcC-CCceeEEeecCCCC-ccchhHHH--HHHHHHH-HH------------------hhhccCCC
Confidence 9887655544 3444 78999999999875 22221232 1122221 11 11233467
Q ss_pred cCEEecCCCcCCCCCc-----ccCCCCCcCEEEeeCCcCCCccch--hhhhccccccccccceEecCCccccccCCCCcc
Q 047429 179 LMDLDLSKNQITGIPK-----SFGDMCCLKTLKIHDNILTAKLPE--LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~-----~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
|+......|++...+. .+..-..|+.+.+..|.|...... .+..+ ...++|+.||+..|-++-....
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl---~y~~~LevLDlqDNtft~~gS~--- 232 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL---FYSHSLEVLDLQDNTFTLEGSR--- 232 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH---HHhCcceeeeccccchhhhhHH---
Confidence 8888888888876442 233345788888888877533221 12222 2235788888888877622111
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC--CCCCccEEEccCCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC--SSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~ 310 (466)
.+...++..+.|+.|.+..|.+. +.-...+...|. ..|+|..|-..+|.+.+.
T Consensus 233 ---~La~al~~W~~lrEL~lnDClls---~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 233 ---YLADALCEWNLLRELRLNDCLLS---NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ---HHHHHhcccchhhhccccchhhc---cccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 22334555566788888876551 111111112222 346777777777776543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-06 Score=69.93 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=64.8
Q ss_pred CcEEeCCCcccccc--chHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 15 LQSINIGLNAIRVR--KFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 15 L~~L~Ls~n~i~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+..+||+.|.+... .+ ..+....+|+..+|++|.+... +..+...++-+++|++++|.+.+++. .+.. +
T Consensus 29 ~h~ldLssc~lm~i~dav-y~l~~~~el~~i~ls~N~fk~f---p~kft~kf~t~t~lNl~~neisdvPe---E~Aa--m 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAV-YMLSKGYELTKISLSDNGFKKF---PKKFTIKFPTATTLNLANNEISDVPE---ELAA--M 99 (177)
T ss_pred hhhcccccchhhHHHHHH-HHHhCCceEEEEecccchhhhC---CHHHhhccchhhhhhcchhhhhhchH---HHhh--h
Confidence 45566666655421 12 3445556666667777776666 55555546667777777777766654 3555 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
+.|+.|+++.|.+. ..|..+..+ .++-.|+..+|...
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L-~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPL-IKLDMLDSPENARA 136 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHH-HhHHHhcCCCCccc
Confidence 67777777777765 445555555 66666666666655
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=68.79 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchh-hhhhhcccCCCcEEEccCCccc
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
++.|.+|.|++|.|+.+.+. --.. +++|+.|.+.+|++.... -..+..+ +.|++|.+-+|.++
T Consensus 63 l~rL~tLll~nNrIt~I~p~--L~~~--~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPD--LDTF--LPNLKTLILTNNSIQELGDLDPLASC-PKLEYLTLLGNPVE 126 (233)
T ss_pred ccccceEEecCCcceeeccc--hhhh--ccccceEEecCcchhhhhhcchhccC-CccceeeecCCchh
Confidence 44455555555555544441 1111 344555555555443210 0122333 44555555555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.7e-05 Score=66.60 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=80.7
Q ss_pred CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc
Q 047429 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF 256 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l 256 (466)
.+...+||++|.+..+ +.|..++.|.+|.+++|.|+...|..-..+ ++|+.|.|.+|+|.... ++
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~------p~l~~L~LtnNsi~~l~--------dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFL------PNLKTLILTNNSIQELG--------DL 106 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhc------cccceEEecCcchhhhh--------hc
Confidence 4567889999998775 356788999999999999998877754444 67999999999987221 11
Q ss_pred CcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 257 PKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 257 p~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
.-+..|+.|++|.+-+|.+ ++-.+--...++.+|+|+.||...=.
T Consensus 107 -~pLa~~p~L~~Ltll~Npv----~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 -DPLASCPKLEYLTLLGNPV----EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred -chhccCCccceeeecCCch----hcccCceeEEEEecCcceEeehhhhh
Confidence 2367788999999998876 33322223456788999999987533
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5e-06 Score=86.76 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=106.8
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCc-------c---chHHHHhc--CCCCCCEEEcCCCCCCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREA-------T---DWLQVVIT--GLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~---~~~~~~~~--~l~~L~~L~Ls~n~l~~~~ 81 (466)
++...++.+........ ..+.... |++|.|.+...... . .+...+.. .-.+|++||+++...-.-.
T Consensus 61 ~ltki~l~~~~~~~~~~-~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTL-EMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHH-HHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 45566666555544433 3444444 77777766443221 0 01112211 1257888888876532111
Q ss_pred ccccccccCCCCCccEEEcCCCCCCchhh-hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccc
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNSAY-HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISK 159 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~ 159 (466)
-. ..+ +..+|+|+.|.+++-.+...-. ....++ ++|..||+|+++++.. . .++++++|+.|. .+=.+.....
T Consensus 139 W~-~ki-g~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~-GIS~LknLq~L~mrnLe~e~~~~ 212 (699)
T KOG3665|consen 139 WP-KKI-GTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--S-GISRLKNLQVLSMRNLEFESYQD 212 (699)
T ss_pred HH-HHH-hhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--H-HHhccccHHHHhccCCCCCchhh
Confidence 10 112 2237888888888776643322 223344 8888889998888744 3 677888888876 3322222100
Q ss_pred cCCCccccCccccccCCCccCEEecCCCcCCCCC-------cccCCCCCcCEEEeeCCcCCCccch
Q 047429 160 CSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-------KSFGDMCCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 160 ~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~ 218 (466)
+ ..+-.+++|++||+|.......+ +.-..+|.|+.||.+++.+.....+
T Consensus 213 --l--------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 213 --L--------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred --H--------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 1 24567889999999987655422 1223478999999998777654444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.2e-05 Score=72.74 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=16.4
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCC
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n 210 (466)
+.+++.|++++|.++.+|. -.++|++|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENC 82 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCC
Confidence 4555566666555555542 1224555555553
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=67.67 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=9.2
Q ss_pred cCCCCcEEEccCCCCCCc
Q 047429 36 YHNKLTSLSLQGLDLREA 53 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~ 53 (466)
.+.+++.|++++|.++.+
T Consensus 50 ~~~~l~~L~Is~c~L~sL 67 (426)
T PRK15386 50 EARASGRLYIKDCDIESL 67 (426)
T ss_pred HhcCCCEEEeCCCCCccc
Confidence 345555555555544444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.7e-05 Score=78.46 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=83.0
Q ss_pred cCCcEEeCCCccccccchHHHh-hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWL-SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
.+|++||+++...-....+..+ ..+|.|+.|.+++-.+.... ...+..++|+|+.||+|+..++.+ ..+..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl----~GIS~-- 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL----SGISR-- 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc----HHHhc--
Confidence 4678888887654333322223 34788888888877665442 345555588888888888877765 23444
Q ss_pred CCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCC--Ch---hhhhcCCcccccc-ccccccc
Q 047429 92 SSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPT--PD---YAFRNMTSLASLT-SLNYITG 156 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~--~~---~~~~~l~~L~~L~-~~n~l~~ 156 (466)
+++|++|.+.+=.+.. ..-..+..+ ++|++||+|........ .. ..-..+++|+.|+ +...+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7788888777766653 223345667 88888888876544211 00 0112467788887 7665554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=1.3e-05 Score=75.61 Aligned_cols=282 Identities=17% Similarity=0.142 Sum_probs=169.0
Q ss_pred cccCCcCCcEEeCCCcc-ccccchHHHhhcCCCCcEEEccCC-CCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccc
Q 047429 8 FHISLEDLQSINIGLNA-IRVRKFDQWLSYHNKLTSLSLQGL-DLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRS 84 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 84 (466)
+-..++++++|++.++. +++......-..+++|++|++..| .++... ...+..++++|++|+++++. +++....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--Lk~la~gC~kL~~lNlSwc~qi~~~gv~- 235 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--LKYLAEGCRKLKYLNLSWCPQISGNGVQ- 235 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--HHHHHHhhhhHHHhhhccCchhhcCcch-
Confidence 34578999999999885 555555233457899999999996 445442 44566779999999999986 3332211
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhh----cccCCCcEEEccCCc-cccCCChhhhhcCCcccccc-c-ccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLS----HISKSLVYLDLSNNQ-LQGPTPDYAFRNMTSLASLT-S-LNYITGI 157 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~-~-~n~l~~~ 157 (466)
....+ +..++.+.+.+|.-.+. +.+. .. ..+..+++.+|. ++.......-..+..|+.|. + ...+++.
T Consensus 236 ~~~rG--~~~l~~~~~kGC~e~~l--e~l~~~~~~~-~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 236 ALQRG--CKELEKLSLKGCLELEL--EALLKAAAYC-LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred HHhcc--chhhhhhhhcccccccH--HHHHHHhccC-hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 22334 66788887787743221 1221 22 346667766664 33222111223467888888 3 3334433
Q ss_pred cccCCCccccCccccccCCCccCEEecCCCc-CCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccce
Q 047429 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ-ITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234 (466)
Q Consensus 158 ~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 234 (466)
... .--.+..+|+.|-++.++ ++. +...=.+++.|+.+++..+...... .+..+...+ +.|++
T Consensus 311 ~l~----------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C--~~lr~ 376 (483)
T KOG4341|consen 311 VLW----------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC--PRLRV 376 (483)
T ss_pred HHH----------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC--chhcc
Confidence 111 122456899999999986 443 2222346789999999998764222 233332222 56999
Q ss_pred EecCCcccc-ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCC-CCCch
Q 047429 235 FMLQNNMLS-GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI-SGMVP 312 (466)
Q Consensus 235 L~L~~n~l~-~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p 312 (466)
+.++++... +..-. .+...-..+..|+.+.|+++.. ++......+..+++|+.+++-.++- +....
T Consensus 377 lslshce~itD~gi~------~l~~~~c~~~~l~~lEL~n~p~------i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 377 LSLSHCELITDEGIR------HLSSSSCSLEGLEVLELDNCPL------ITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred CChhhhhhhhhhhhh------hhhhccccccccceeeecCCCC------chHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 999987543 21000 1223345667899999998743 4444556677888999999988762 22222
Q ss_pred hhh-hhhhhhhh
Q 047429 313 TCL-NNLSAMVQ 323 (466)
Q Consensus 313 ~~~-~~l~~L~~ 323 (466)
..| .++++++.
T Consensus 445 ~~~~~~lp~i~v 456 (483)
T KOG4341|consen 445 SRFATHLPNIKV 456 (483)
T ss_pred HHHHhhCcccee
Confidence 222 34555544
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=1.8e-05 Score=74.84 Aligned_cols=277 Identities=18% Similarity=0.115 Sum_probs=164.6
Q ss_pred cCCcEEeCCCccccccchH-HHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccC
Q 047429 13 EDLQSINIGLNAIRVRKFD-QWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNS 90 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~ 90 (466)
..|+.|.+.++.-.+..+. .....+++++.|++.++....... ...+.+.+++|++|++..|. ++...-. .....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~g- 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEG- 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHH-HHHHh-
Confidence 4588899998875444332 334579999999999996322222 44566669999999999853 4433221 11223
Q ss_pred CCCCccEEEcCCCC-CCchhhhh-hhcccCCCcEEEccCCccccCCChhhh----hcCCcccccc--cccccccccccCC
Q 047429 91 SSSSLTHLHLSLCG-LSNSAYHC-LSHISKSLVYLDLSNNQLQGPTPDYAF----RNMTSLASLT--SLNYITGISKCSL 162 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~~~L~~L~Ls~n~l~~~~~~~~~----~~l~~L~~L~--~~n~l~~~~~~~l 162 (466)
+++|++|+++.|. +++..... +.+. +.++.+.+.+|.=.+ .. .+ +.+..+.+++ +.+.+++.+..
T Consensus 215 -C~kL~~lNlSwc~qi~~~gv~~~~rG~-~~l~~~~~kGC~e~~--le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~-- 287 (483)
T KOG4341|consen 215 -CRKLKYLNLSWCPQISGNGVQALQRGC-KELEKLSLKGCLELE--LE-ALLKAAAYCLEILKLNLQHCNQLTDEDLW-- 287 (483)
T ss_pred -hhhHHHhhhccCchhhcCcchHHhccc-hhhhhhhhccccccc--HH-HHHHHhccChHhhccchhhhccccchHHH--
Confidence 8999999999984 44322222 2334 556777666653211 11 22 1234455555 45566665321
Q ss_pred CccccCccccccCCCccCEEecCCCcC-CC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQI-TG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
..-..+.+|+.|+.+++.- +. +...-.+..+|+.|.++.|+--+... |. .+..+. +.|+.+++.+
T Consensus 288 --------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft-~l~rn~-~~Le~l~~e~ 355 (483)
T KOG4341|consen 288 --------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FT-MLGRNC-PHLERLDLEE 355 (483)
T ss_pred --------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--hh-hhhcCC-hhhhhhcccc
Confidence 1224577899999988754 33 22233567899999999997422211 11 111122 4699999988
Q ss_pred ccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccccc----CCCCCCCCCCccEEEccCCCCC-CCchhh
Q 047429 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS----ATPKLCSSPMLQVLDFSHNNIS-GMVPTC 314 (466)
Q Consensus 240 n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 314 (466)
+...- ++++-..-.+++.|+.+.++++.. ++.. ....-+....|..+.|++++.. +..-+.
T Consensus 356 ~~~~~--------d~tL~sls~~C~~lr~lslshce~------itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 356 CGLIT--------DGTLASLSRNCPRLRVLSLSHCEL------ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred cceeh--------hhhHhhhccCCchhccCChhhhhh------hhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 86541 113333456789999999998754 1111 1223356778999999999854 233344
Q ss_pred hhhhhhhhhcC
Q 047429 315 LNNLSAMVQNG 325 (466)
Q Consensus 315 ~~~l~~L~~l~ 325 (466)
+..++.|+.++
T Consensus 422 l~~c~~Leri~ 432 (483)
T KOG4341|consen 422 LSICRNLERIE 432 (483)
T ss_pred HhhCcccceee
Confidence 55556665543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=3.1e-05 Score=69.45 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=77.9
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchh-hhhhh
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLS 114 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~ 114 (466)
.+.+.+.|+..+|++.++ .+...++.|++|.||-|+|+.+.+ +.. |++|++|+|..|.|.... -..+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p----l~r--CtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP----LQR--CTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh----HHH--HHHHHHHHHHhcccccHHHHHHHh
Confidence 356788899999998876 455559999999999999988754 455 899999999999997643 23567
Q ss_pred cccCCCcEEEccCCccccCCCh----hhhhcCCcccccc
Q 047429 115 HISKSLVYLDLSNNQLQGPTPD----YAFRNMTSLASLT 149 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~ 149 (466)
++ ++|+.|.|..|.-.+..+. ..+.-+++|+.|+
T Consensus 86 nl-psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NL-PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cC-chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77 9999999999987655443 1345577777776
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00018 Score=64.17 Aligned_cols=108 Identities=23% Similarity=0.201 Sum_probs=61.7
Q ss_pred hhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch-hhhh
Q 047429 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS-AYHC 112 (466)
Q Consensus 34 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~ 112 (466)
...+..|+.|++.+.+++... .+.. +++|+.|+++.|.............. +++|++|+++.|++..+ .-..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~----~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~--~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT----NFPK-LPKLKKLELSDNYRRVSGGLEVLAEK--APNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccchhhhhhhccceeecc----cCCC-cchhhhhcccCCcccccccceehhhh--CCceeEEeecCCccccccccch
Confidence 344566777777777766653 2333 77788888888743322221012222 57888888888877631 1123
Q ss_pred hhcccCCCcEEEccCCccccCCC--hhhhhcCCcccccc
Q 047429 113 LSHISKSLVYLDLSNNQLQGPTP--DYAFRNMTSLASLT 149 (466)
Q Consensus 113 l~~l~~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~ 149 (466)
+..+ .+|..|++.+|..+...- ...|.-+++|+.|+
T Consensus 112 l~~l-~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKEL-ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhh-cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3445 667778887777654211 11344567777776
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=54.03 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=54.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..+|.++++|+.+.+.. .+..... ..|..+++|+.+.+.++ +..+ ....+..+++|+.+.+.. .+..... .
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~-~~F~~~~~l~~i~~~~~-~~~i---~~~~F~~~~~l~~i~~~~-~~~~i~~--~ 75 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGE-NAFSNCTSLKSINFPNN-LTSI---GDNAFSNCKSLESITFPN-NLKSIGD--N 75 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-T-TTTTT-TT-SEEEESST-TSCE----TTTTTT-TT-EEEEETS-TT-EE-T--T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeCh-hhccccccccccccccc-cccc---ceeeeecccccccccccc-ccccccc--c
Confidence 44566777777777763 4444444 56777777777777664 5554 333444466677777754 3333333 3
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
.+.. +++|+.+++..+ +.......|.+. +|+.+.+.. .+... +...|.++++|
T Consensus 76 ~F~~--~~~l~~i~~~~~-~~~i~~~~f~~~--~l~~i~~~~-~~~~i-~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSN--CTNLKNIDIPSN-ITEIGSSSFSNC--NLKEINIPS-NITKI-EENAFKNCTKL 128 (129)
T ss_dssp TTTT---TTECEEEETTT--BEEHTTTTTT---T--EEE-TT-B-SS-----GGG-----
T ss_pred cccc--cccccccccCcc-ccEEchhhhcCC--CceEEEECC-CccEE-CCccccccccC
Confidence 4554 667777777654 444444455442 566666654 33322 22255555544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=8.9e-05 Score=66.55 Aligned_cols=102 Identities=22% Similarity=0.127 Sum_probs=79.4
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+.+++.|++.++.++++ .....++.|++|.||-|.|+... .+.. +++|++|+|..|.|.++... ..+.+
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~----pl~r-CtrLkElYLRkN~I~sldEL-~YLkn- 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA----PLQR-CTRLKELYLRKNCIESLDEL-EYLKN- 86 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch----hHHH-HHHHHHHHHHhcccccHHHH-HHHhc-
Confidence 356788999999999877 45788999999999999998863 4555 89999999999999887653 44566
Q ss_pred CCCCccEEEcCCCCCCchhhhh-----hhcccCCCcEEE
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHC-----LSHISKSLVYLD 124 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~-----l~~l~~~L~~L~ 124 (466)
+++|+.|-|..|.=.+..+.. +.-+ ++|+.||
T Consensus 87 -lpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 87 -LPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred -CchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 899999999988665544332 3445 8888884
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00076 Score=60.33 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=76.3
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+..|+.|++.+..++.. ..|..+++|+.|.+|.|.......+..-+.. +|+|++|++++|++..+... .....
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl-~pl~~- 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTL-RPLKE- 114 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccccccc-chhhh-
Confidence 456677777777776644 4577899999999999954433222333444 79999999999999875432 45556
Q ss_pred CCCCccEEEcCCCCCCchh--hhhhhcccCCCcEEEccCC
Q 047429 91 SSSSLTHLHLSLCGLSNSA--YHCLSHISKSLVYLDLSNN 128 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~~L~~L~Ls~n 128 (466)
+.+|..|++.+|..+... -..++.++++|++|+-...
T Consensus 115 -l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 -LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred -hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 889999999999877521 1122333388888865544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.009 Score=48.63 Aligned_cols=121 Identities=24% Similarity=0.396 Sum_probs=58.2
Q ss_pred ccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +.......|... ++++.+.+.. .+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~------~~l~~i~~~~-~~~------ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC------KSLESITFPN-NLK------ 70 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-------TT-EEEEETS-TT-------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc------cccccccccc-ccc------
Confidence 4677777888888764 455543 36777778888888765 554444444333 3577777765 333
Q ss_pred cccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 250 TELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 250 ~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.++ ..|..+++|+.+++..+ + .......|.++ .|+.+.+.. .+..+...+|.++++|
T Consensus 71 -----~i~~~~F~~~~~l~~i~~~~~-~-------~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 71 -----SIGDNAFSNCTNLKNIDIPSN-I-------TEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -----EE-TTTTTT-TTECEEEETTT---------BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred -----ccccccccccccccccccCcc-c-------cEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 222 34667888888888653 2 22334456676 888888875 5555667788887766
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=2e-05 Score=78.82 Aligned_cols=196 Identities=23% Similarity=0.217 Sum_probs=113.8
Q ss_pred ccEEEcCCCCCCchhhh----hhhcccCCCcEEEccCCccccCCChhhhh----cC-Ccccccc-cccccccccccCCCc
Q 047429 95 LTHLHLSLCGLSNSAYH----CLSHISKSLVYLDLSNNQLQGPTPDYAFR----NM-TSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 95 L~~L~Ls~n~l~~~~~~----~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~----~l-~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
+..|.|.+|.+...... .+... .+|+.|++++|.+.+.... .+. .. ..++.|. ..|.++..+...+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~-~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~- 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGAR-LLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA- 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHH-HHHhhcccchHHHHHHHhhcccccccchHHHH-
Confidence 66677777776643333 33344 6677777777777633222 221 11 3455566 66666666554455
Q ss_pred cccCccccccCCCccCEEecCCCcCCC-----CCcccC----CCCCcCEEEeeCCcCCCccchhhhhccccccccccceE
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFG----DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 235 (466)
..+.....++.++++.|.+.. ++..+. ...++++|.+.+|.++..........+. ..+..+..+
T Consensus 166 ------~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-~~~~~~~el 238 (478)
T KOG4308|consen 166 ------AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-SGESLLREL 238 (478)
T ss_pred ------HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-ccchhhHHH
Confidence 566667788888888887743 233343 4678888999888887444332222211 111225668
Q ss_pred ecCCccccccCCCCcccccccCcccCCC-CCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 236 MLQNNMLSGSLPGVTELDGTFPKQFCRP-SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 236 ~L~~n~l~~~~~~~~~l~~~lp~~~~~l-~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
++..|.+.+.... .+...+..+ ..++.++++.|.|.-.+ .......+..++.++++.++.|.+..
T Consensus 239 ~l~~n~l~d~g~~------~L~~~l~~~~~~l~~l~l~~nsi~~~~---~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 239 DLASNKLGDVGVE------KLLPCLSVLSETLRVLDLSRNSITEKG---VRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhcCcchHHHH------HHHHHhcccchhhhhhhhhcCCccccc---hHHHHHHHhhhHHHHHhhcccCcccc
Confidence 8888887633111 223334445 67788888886651100 01233445567788888888888864
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=8.1e-05 Score=74.50 Aligned_cols=191 Identities=27% Similarity=0.314 Sum_probs=81.1
Q ss_pred CcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc--CCC-CCccEEEcCCCCCCchh----hh
Q 047429 40 LTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN--SSS-SSLTHLHLSLCGLSNSA----YH 111 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~l-~~L~~L~Ls~n~l~~~~----~~ 111 (466)
+..|.|.+|.+.... ..........+.|..|++++|.+.+... ..+.. ... ..+++|++..|.++... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 555566666554431 0011222224556666666666553221 11110 001 33455556666555332 22
Q ss_pred hhhcccCCCcEEEccCCccccC----CChhhhh----cCCcccccc-cccccccccccCCCccccCccccccCCCc-cCE
Q 047429 112 CLSHISKSLVYLDLSNNQLQGP----TPDYAFR----NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTS-LMD 181 (466)
Q Consensus 112 ~l~~l~~~L~~L~Ls~n~l~~~----~~~~~~~----~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~-L~~ 181 (466)
.+... ..++.++++.|.+... .+. .+. ...++++|+ .++.++...+..+. ..+...+. +..
T Consensus 167 ~L~~~-~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~-------~~l~~~~~~~~e 237 (478)
T KOG4308|consen 167 VLEKN-EHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLD-------EVLASGESLLRE 237 (478)
T ss_pred HHhcc-cchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHH-------HHHhccchhhHH
Confidence 33333 5566666666655311 111 111 233445555 44444433222222 23333333 444
Q ss_pred EecCCCcCCC-----CCcccCCC-CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 182 LDLSKNQITG-----IPKSFGDM-CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 182 L~Ls~n~l~~-----~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
|++.+|.+.+ +...+..+ +.+++++++.|.+++............+ +.++.+.++.|.+.
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~--~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC--RQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhh--HHHHHhhcccCccc
Confidence 5555555543 12233333 4455555555555544444333332211 24555555555544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.0047 Score=33.01 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=13.8
Q ss_pred CccEEEccCCCCCCCchhhhhh
Q 047429 296 MLQVLDFSHNNISGMVPTCLNN 317 (466)
Q Consensus 296 ~L~~L~Ls~N~l~~~~p~~~~~ 317 (466)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56655554
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.0079 Score=32.13 Aligned_cols=18 Identities=61% Similarity=0.816 Sum_probs=8.7
Q ss_pred cCEEecCCCcCCCCCccc
Q 047429 179 LMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l 196 (466)
|++|++++|.++.+|..|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555554444433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.019 Score=58.32 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=69.6
Q ss_pred cccCCcCCcEEeCCCc-c-cccc--chHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcCCCCCCEEEcCCCC-CCCCC
Q 047429 8 FHISLEDLQSINIGLN-A-IRVR--KFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITGLPSLRELDLSSSA-PPKIN 81 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n-~-i~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 81 (466)
....++.|+.|+++++ . +... ........+++|+.|+++++. +++.. ...+...+++|++|.+.++. +++..
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--LSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh--HHHHHhhCCCcceEccCCCCccchhH
Confidence 3457789999999873 2 2111 111344567889999999998 55553 44555558899999988887 45443
Q ss_pred ccccccccCCCCCccEEEcCCCCCCch--hhhhhhcccCCCcEEEccC
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNS--AYHCLSHISKSLVYLDLSN 127 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~~L~~L~Ls~ 127 (466)
-. ..... ++.|++|++++|..... ........ ++++.|.+..
T Consensus 287 l~-~i~~~--~~~L~~L~l~~c~~~~d~~l~~~~~~c-~~l~~l~~~~ 330 (482)
T KOG1947|consen 287 LV-SIAER--CPSLRELDLSGCHGLTDSGLEALLKNC-PNLRELKLLS 330 (482)
T ss_pred HH-HHHHh--cCcccEEeeecCccchHHHHHHHHHhC-cchhhhhhhh
Confidence 31 12223 78899999998865321 22222333 5555555443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.015 Score=28.82 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.4
Q ss_pred CCCeeeccCCcCc
Q 047429 402 HLGVVNLSNNNFS 414 (466)
Q Consensus 402 ~L~~L~Ls~N~l~ 414 (466)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.015 Score=50.24 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD 49 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~ 49 (466)
++.+|-++..|..+.. ..+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheecccc
Confidence 4455656555555555 555556666666665554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.11 Score=28.94 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=13.8
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|+.|+|++|+|+ .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777788888777 66654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.11 Score=28.94 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=13.8
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|+.|+|++|+|+ .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777788888777 66654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.14 Score=51.98 Aligned_cols=116 Identities=24% Similarity=0.263 Sum_probs=50.6
Q ss_pred CcCCcEEeCCCcc-ccccchHHHhhcCCCCcEEEccCC-CC-CCccchHHHHhcCCCCCCEEEcCCCC-CCCCCcccccc
Q 047429 12 LEDLQSINIGLNA-IRVRKFDQWLSYHNKLTSLSLQGL-DL-REATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSL 87 (466)
Q Consensus 12 l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 87 (466)
++.|+.|.+..+. +...........+++|+.|+++++ .. .............+++|+.|+++.+. +++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--SAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH--HHH
Confidence 4555555555552 222211134455566666666552 11 11111112233335566666666555 333222 111
Q ss_pred ccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCcc
Q 047429 88 VNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
.. .+++|++|.+..|. ++...-..+....+.|++|+++++..
T Consensus 265 ~~-~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 AS-RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred Hh-hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 11 14566666655555 44333333322215566666665543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.21 Score=27.72 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=16.7
Q ss_pred CCCccEEEccCCCCCCCchhhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+++|++|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.21 Score=27.72 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=16.7
Q ss_pred CCCccEEEccCCCCCCCchhhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+++|++|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.15 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=10.1
Q ss_pred cCCcEEeCCCccccccch
Q 047429 13 EDLQSINIGLNAIRVRKF 30 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~ 30 (466)
++|++|+|++|.+++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566677777776665544
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.083 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=12.1
Q ss_pred CCCccEEEccCCCCCCCchhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
+++|++|+|++|.|++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777765544443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.033 Score=49.21 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=38.0
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
+......+.||++.|++ -..-..|.-++.|..||++.|.+. -.|..++....+.
T Consensus 38 i~~~kr~tvld~~s~r~--------vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~ 91 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL--------VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV 91 (326)
T ss_pred hhccceeeeehhhhhHH--------HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence 44456677888888665 223344566677888999988887 6788888877773
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.16 Score=44.11 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCc-cccCCChhhhhcCCc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQ-LQGPTPDYAFRNMTS 144 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~ 144 (466)
++.+|-++..|....- ..+.. ++.++.|.+.+|..-+ ..-+.+++..++|+.|++++|. |+..... .+..+++
T Consensus 103 IeaVDAsds~I~~eGl--e~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL--EHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHH--HHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence 3445555555444333 34444 5555555555553321 1122233333556666666553 3322222 3334444
Q ss_pred cccc
Q 047429 145 LASL 148 (466)
Q Consensus 145 L~~L 148 (466)
|+.|
T Consensus 178 Lr~L 181 (221)
T KOG3864|consen 178 LRRL 181 (221)
T ss_pred hHHH
Confidence 4444
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.42 Score=26.51 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=14.5
Q ss_pred CCCCeeeccCCcCcccCCCC
Q 047429 401 SHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 401 ~~L~~L~Ls~N~l~~~ip~~ 420 (466)
++|+.|++++|+|+ .+|+-
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 46788888888887 77763
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=84.24 E-value=11 Score=37.28 Aligned_cols=67 Identities=28% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhh--cccCCCcEEEccCCccccCCCh
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS--HISKSLVYLDLSNNQLQGPTPD 136 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~L~~L~Ls~n~l~~~~~~ 136 (466)
-+.+++++++.|.+.+-.+ ..+.....+ +.++.|..+......+. .--..+.+++++.|.....+|.
T Consensus 164 npr~r~~dls~npi~dkvp--ihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP--IHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCC--ccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 4667888888888776655 333332233 66677766543222111 0003578899999988777665
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.51 E-value=0.059 Score=47.68 Aligned_cols=82 Identities=27% Similarity=0.205 Sum_probs=58.3
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
...+.||++.|++..... .|+-++.+..|+ +.|.+.- +| ..++....++++++.+|..+..|.++
T Consensus 42 kr~tvld~~s~r~vn~~~--n~s~~t~~~rl~~sknq~~~-----~~-------~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGK--NFSILTRLVRLDLSKNQIKF-----LP-------KDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred ceeeeehhhhhHHHhhcc--chHHHHHHHHHhccHhhHhh-----Ch-------hhHHHHHHHHHHHhhccchhhCCccc
Confidence 666777777777653322 455666677777 6666553 44 56777777888888888888888888
Q ss_pred CCCCCcCEEEeeCCcCC
Q 047429 197 GDMCCLKTLKIHDNILT 213 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~ 213 (466)
...++++++++-.+.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 88888888888877643
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.32 E-value=1.4 Score=44.27 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCC
Q 047429 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSS 75 (466)
Q Consensus 38 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 75 (466)
+.+..++|++|++..+.. ...+....|+|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDA-LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhh-hhHHHHhcchhheeecccc
Confidence 334444444444444322 2222222444444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 466 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-13 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-07 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 3e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 8e-48
Identities = 92/381 (24%), Positives = 143/381 (37%), Gaps = 63/381 (16%)
Query: 61 ITGLPSLRELDLSS-----SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115
+ + L+ LDLS P SL N S+S L L LS S L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPE-------SLTNLSAS-LLTLDLSSNNFSGPILPNLCQ 390
Query: 116 ISK-SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAF 173
K +L L L NN G P N + L SL S NY++G ++P +L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSG----TIPSSL------- 438
Query: 174 SNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232
+++ L DL L N + G IP+ + L+TL + N LT ++P N + +L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------NL 492
Query: 233 QSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC 292
L NN L+G PK R +L L L +N +G+ +L
Sbjct: 493 NWISLSNNRLTG----------EIPKWIGRLENLAILKLSNNSF-------SGNIPAELG 535
Query: 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLV 352
L LD + N +G +P + S + I+ + + LL
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 353 WKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQL 400
++ I S L +++ G + L G IP+ +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 401 SHLGVVNLSNNNFSGKIPSSI 421
+L ++NL +N+ SG IP +
Sbjct: 656 PYLFILNLGHNDISGSIPDEV 676
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 1e-41
Identities = 85/387 (21%), Positives = 132/387 (34%), Gaps = 108/387 (27%)
Query: 64 LPSLRELDLSS-----SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118
+L+EL L + PP + S+ S L LHLS LS + L +S
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTL---------SNCSELVSLHLSFNYLSGTIPSSLGSLS- 442
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVT 177
L L L N L+G P + +L +L N +TG +P L SN T
Sbjct: 443 KLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTG----EIPSGL-------SNCT 490
Query: 178 SLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
+L + LS N++TG IPK G + L LK+ +N + +P + SL
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR------SLIWLD 544
Query: 237 LQNNMLSGSLP----------GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS 286
L N+ +G++P + G E N G
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN-----LLEFQGI 599
Query: 287 ATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQ 346
+ +L + + G +N +M+
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM------------------------ 635
Query: 347 DRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIP 394
+D+S N LSG IP+EI S+ + G IP
Sbjct: 636 ----------------------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 395 RSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L L +++LS+N G+IP ++
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAM 700
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 3e-40
Identities = 95/420 (22%), Positives = 147/420 (35%), Gaps = 115/420 (27%)
Query: 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN-SSSSSL 95
+K+TS+ L L + + L L L LS+ ++ + S+ S+SL
Sbjct: 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN------SHINGSVSGFKCSASL 102
Query: 96 THLHLSLCGLSNS--AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152
T L LS LS L S L +L++S+N L P + SL L S N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 153 YITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNI 211
I+G + + L L +S N+I+G + L+ L + N
Sbjct: 162 SISG----ANVVGW----VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211
Query: 212 LTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDL 271
+ +P L + S +LQ + N LSG + + L L++
Sbjct: 212 FSTGIPFLG-DCS------ALQHLDISGNKLSGDF----------SRAISTCTELKLLNI 254
Query: 272 ESNQ---------------LWLRFNHINGSATPKLCSS-PMLQVLDFSHNNISGMVPTCL 315
SNQ L L N G L + L LD S N+ G VP
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 316 NNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN 375
+ S + +S+ LS N
Sbjct: 315 GSCSLL----------------------------------------------ESLALSSN 328
Query: 376 NLSGKIPEE----ITSL---------LIGKIPRSFSQLS-HLGVVNLSNNNFSGKIPSSI 421
N SG++P + + L G++P S + LS L ++LS+NNFSG I ++
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-33
Identities = 72/357 (20%), Positives = 121/357 (33%), Gaps = 92/357 (25%)
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTSLASL 148
+T + LS L+ S + L L LSN+ + G F+ SL SL
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105
Query: 149 T-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCC-LKTL 205
S N ++G + + + + L L++S N + S G L+ L
Sbjct: 106 DLSRNSLSG----PVT-----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 206 KIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSS 265
+ N ++ ++ L+ + N +SG + R +
Sbjct: 157 DLSANSISGANVVGWVLSD---GCGELKHLAISGNKISGDVD------------VSRCVN 201
Query: 266 LVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-N 324
L LD+ SN + P L LQ LD S N +SG ++ + + N
Sbjct: 202 LEFLDVSSNNF-------STG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 325 GSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKS-------IDLSDNNL 377
SSN + +P + L++N
Sbjct: 254 ISSN--------------------------------QFVGPIPPLPLKSLQYLSLAENKF 281
Query: 378 SGKIPEEI----TSL---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+G+IP+ + +L G +P F S L + LS+NNFSG++P
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 36/197 (18%), Positives = 58/197 (29%), Gaps = 49/197 (24%)
Query: 227 CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS 286
C + S L + L+ + L L L ++ +
Sbjct: 47 CRDDKVTSIDLSSKPLNVGF-------SAVSSSLLSLTGLESLFLSNSHI--------NG 91
Query: 287 ATPKLCSSPMLQVLDFSHNNISGMVPT--CLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEF 343
+ S L LD S N++SG V T L + S + N SSN +
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-----TLDFPGKVSG 146
Query: 344 DYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHL 403
+ +L + +DLS N++SG L
Sbjct: 147 GLKLNSL-----------------EVLDLSANSISGANVVGWVL---------SDGCGEL 180
Query: 404 GVVNLSNNNFSGKIPSS 420
+ +S N SG + S
Sbjct: 181 KHLAISGNKISGDVDVS 197
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 40/165 (24%)
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
CR + +DL S L + F+ ++ L S L+ L S+++I+G V + S
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHINGSVSGFKCSASL 102
Query: 321 MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPK--SIDLSDNNLS 378
+ S N + P+ ++ + +++S N L
Sbjct: 103 TSLDLSRNSLS----------------------GPVTTLTSLG-SCSGLKFLNVSSNTLD 139
Query: 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPL 423
+L+ L V++LS N+ SG L
Sbjct: 140 FPGKVSG-----------GLKLNSLEVLDLSANSISGANVVGWVL 173
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-31
Identities = 72/349 (20%), Positives = 125/349 (35%), Gaps = 100/349 (28%)
Query: 90 SSSSSLTHLHLSLCGLSNSAY--HCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTSLA 146
+ + + +L LS L L+++ L +L + N L GP P A +T L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPP-AIAKLTQLH 104
Query: 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKT 204
L + ++G ++P L S + +L+ LD S N ++G +P S + L
Sbjct: 105 YLYITHTNVSG----AIPDFL-------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 205 LKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264
+ N ++ +P+ + +FS K S + N L+G +P F
Sbjct: 154 ITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIP----------PTFAN-L 197
Query: 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQN 324
+L +DL N L G A+ S Q + + N+++ + + +
Sbjct: 198 NLAFVDLSRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL--- 246
Query: 325 GSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEE 384
+DL +N + G +P+
Sbjct: 247 -------------------------------------------NGLDLRNNRIYGTLPQ- 262
Query: 385 ITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKN 433
+QL L +N+S NN G+IP LQ F+ SAY N
Sbjct: 263 -----------GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 59/294 (20%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS------SAPPKINYRSHSLVNSS 91
++ +L L GL+L + + LP L L + PP I +
Sbjct: 50 YRVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI---------AK 99
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150
+ L +L+++ +S + LS I LV LD S N L G P + ++ +L +T
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPP-SISSLPNLVGITFD 157
Query: 151 LNYITGISKCSLPITLVRPKYAFSNVTSLM-DLDLSKNQITG-IPKSFGDMCCLKTLKIH 208
N I+G ++P + + + + L + +S+N++TG IP +F ++ L + +
Sbjct: 158 GNRISG----AIPDS-------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 209 DNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVE 268
N+L LF + K+ Q L N L+ L V +L
Sbjct: 206 RNMLEGDASVLFGSD------KNTQKIHLAKNSLAFDLGKVGLS-----------KNLNG 248
Query: 269 LDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT--CLNNLSA 320
LDL +N++ G+ L L L+ S NN+ G +P L
Sbjct: 249 LDLRNNRI-------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 7e-15
Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 68/183 (37%)
Query: 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT--PKLCSSPMLQVLDFSH-NNISGM 310
G + + LDL L L + P L L NN+ G
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNL-------PKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 311 VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSI 370
+P + L+ + +
Sbjct: 93 IPPAIAKLTQL----------------------------------------------HYL 106
Query: 371 DLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
++ N+SG IP+ ++ + L G +P S S L +L + N SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 419 SSI 421
S
Sbjct: 167 DSY 169
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 67/406 (16%), Positives = 122/406 (30%), Gaps = 69/406 (16%)
Query: 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS----SAPPKINYRSHSLVNSSSSS 94
LT + + L + LP ++ ++++ S +
Sbjct: 250 DLTDVEVYNCPNLTK---LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 95 LTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152
+ +++ L L + K L L+ NQL+G P AF + LASL + N
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGKLP--AFGSEIKLASLNLAYN 363
Query: 153 YITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC--LKTLKIHDN 210
IT I P + +L + N++ IP F + + N
Sbjct: 364 QITEI-----------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 211 ILTAKLPELFLNFSAGCAK-KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVEL 269
+ + + F K ++ S L NN +S + F S L +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL----------FSTGSPLSSI 462
Query: 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT-CLNNLSAMVQ-NGSS 327
+L N L + ++ +L +D N ++ + L +V + S
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522
Query: 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387
N P L G+ D N + PE IT
Sbjct: 523 N-------SFSKFPTQPLNSSTL-----------KGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 388 L-----------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
I K+ ++ V+++ +N S +
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVC 608
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 51/393 (12%), Positives = 111/393 (28%), Gaps = 64/393 (16%)
Query: 61 ITGLPSLRELDLS----SSAPPKINYRSHSLVNSSS-----------SSLTHLHLSLCGL 105
+ L LR+ + + + + + + LT + + C
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261
Query: 106 SNSAYHCLSHISKSLVYLDLSNNQLQG-PTPDYAFRNMTSLASLTSLNYITGISKCSLPI 164
L + + ++++ N+ ++ + + I I +L
Sbjct: 262 LTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNL-- 317
Query: 165 TLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224
+ + + L L+ NQ+ G +FG L +L + N +T
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT- 376
Query: 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN 284
+ +++ +N L +P + + S + +D N++
Sbjct: 377 -----EQVENLSFAHNKLK-YIPNIFDA--------KSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 285 GSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEF 343
P + ++ S+N IS + S + N N + I
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-----MLTEIPKNSL 477
Query: 344 DYQDRALLVWKPIDSIY----KITLGLPKSI-----------DLSDNNLSGKIPEEITSL 388
++ + SI K+T L DLS N+ S P + +
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535
Query: 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+ + N + P I
Sbjct: 536 ------STLKGFGIRNQRDAQGNRTLREWPEGI 562
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 9e-24
Identities = 63/436 (14%), Positives = 125/436 (28%), Gaps = 118/436 (27%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSL----SLQGLDLRE---ATDWLQVVITG 63
+L ++Q IN+ N +Q L +Q + + T ++ +
Sbjct: 271 ALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 64 LPSLRELDLS----SSAPPKINYRSHSLVNSSSSSLTHLHLS---LCGLSNSAYHCLSHI 116
+ L L+ P S L L+L+ + + +
Sbjct: 329 MKKLGMLECLYNQLEGKLPAF---------GSEIKLASLNLAYNQITEIPAN----FCGF 375
Query: 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKC---SLPITLVRPKYA 172
++ + L ++N+L+ + ++++ ++++ S N I + L T
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP------ 429
Query: 173 FSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAK-K 230
++ ++LS NQI+ PK F L ++ + N+LT + +
Sbjct: 430 -FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488
Query: 231 SLQSFMLQNNMLS--------GSLPGVTELD------GTFPKQFCRPSSLVELDLESNQL 276
L S L+ N L+ +LP + +D FP Q S+L + NQ
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI-RNQR 547
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336
+ N + P L L N+I + N+
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI------------------ 589
Query: 337 LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS 396
+D+ DN
Sbjct: 590 -------------------------------SVLDIKDNPNISIDLS------------Y 606
Query: 397 FSQLSHLGVVNLSNNN 412
G+ L +
Sbjct: 607 VCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 41/375 (10%), Positives = 104/375 (27%), Gaps = 73/375 (19%)
Query: 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
+S+ +T L L G S + ++ L L L ++ + + + +++ S
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 150 SLNYITGISKCSLPITLVRPKY-------------------AFSNVTSLMDLDLSKNQIT 190
+ + + R + + + N IT
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 191 GIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250
+ K+ + L+ + ++ A+ ++ +L +T
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYAQQYKTEDLKWDNLKDLT 252
Query: 251 ELD-------GTFPKQFCRPSSLVELDLESNQLW-LRFNHINGSATPKLCSSPMLQVLDF 302
+++ P + +++ N+ + A +Q++
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 303 SHNNI-SGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
+NN+ + V T L + + N + + +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----------------------KLPAFG 350
Query: 361 KITLGLPKSIDLSDNNLSGKIPEEITSLL------------IGKIPRSFS--QLSHLGVV 406
L S++L+ N ++ IP + IP F +S + +
Sbjct: 351 SEI-KL-ASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 407 NLSNNNFSGKIPSSI 421
+ S N +
Sbjct: 408 DFSYNEIGSVDGKNF 422
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 16/75 (21%)
Query: 368 KSIDLSDNNLSGKIPEEITSL----------------LIGKIPRSFSQLSHLGVVNLSNN 411
+ L SG++P+ I L P+ S
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143
Query: 412 NFSGKIPSSIPLQTF 426
++ P + F
Sbjct: 144 HYQKTFVDYDPREDF 158
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-29
Identities = 81/429 (18%), Positives = 134/429 (31%), Gaps = 101/429 (23%)
Query: 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS-HSLVNSSSSSLTHL 98
+T L+L LR T L LD+ + K+ L L L
Sbjct: 27 ITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPELCQKL-----PMLKVL 78
Query: 99 HLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGI 157
+L LS + + +L L L +N +Q + F +L +L S N ++
Sbjct: 79 NLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSST 136
Query: 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC---LKTLKIHDNILTA 214
+ +L +L LS N+I + D+ LK L++ N +
Sbjct: 137 -----------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 215 KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274
P F L L N L SL L +S+ L L ++
Sbjct: 186 FSPGCFHAIG------RLFGLFLNNVQLGPSLTEKLCL-------ELANTSIRNLSLSNS 232
Query: 275 Q-------------------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315
Q L L +N++N P L+ +NNI + L
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 316 NNLSAMV-----QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP--K 368
+ L + ++ + I + IDD F L +
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF--------------------QWLKCLE 332
Query: 369 SIDLSDNNLSGKIPEEITSL--------------LIGKIPRSFSQLSH--LGVVNLSNNN 412
+++ DN++ G T L L +F L+H L ++NL+ N
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 413 FSGKIPSSI 421
S +
Sbjct: 393 ISKIESDAF 401
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 63/371 (16%), Positives = 119/371 (32%), Gaps = 88/371 (23%)
Query: 60 VITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119
+ TGL +L+ L LS+S + + V+ + S L L+L+ +S S +
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-H 406
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTS 178
L LDL N++ +R + ++ + S N + + +F+ V S
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-----------TRNSFALVPS 455
Query: 179 LMDLDLSKNQITGI---PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
L L L + + + P F + L L + +N + ++ L+
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEIL 509
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP 295
LQ+N L+ G S L L+LESN + I L
Sbjct: 510 DLQHNNLARLWKHA--NPGGPIYFLKGLSHLHILNLESNGF----DEIPVEVFKDL---F 560
Query: 296 MLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKP 355
L+++D NN++ + + NN ++
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSL---------------------------------- 586
Query: 356 IDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSG 415
KS++L N ++ + +L +++ N F
Sbjct: 587 ------------KSLNLQKNLITSVEKKVFGPA-----------FRNLTELDMRFNPFDC 623
Query: 416 KIPSSIPLQTF 426
S +
Sbjct: 624 TCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 71/412 (17%), Positives = 122/412 (29%), Gaps = 98/412 (23%)
Query: 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS--SSLTH 97
L L + D L ++ L+L+ N + + S LT
Sbjct: 6 HEVADCSHLKLTQVPDDL------PTNITVLNLTH------NQLRRLPAANFTRYSQLTS 53
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG 156
L + +S + L L+L +N+L + F T+L L N I
Sbjct: 54 LDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSIQK 111
Query: 157 ISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAK 215
I F +L+ LDLS N ++ + + L+ L + +N + A
Sbjct: 112 I-----------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160
Query: 216 LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275
E F+ SL+ L +N + PG F L L L + Q
Sbjct: 161 KSEELDIFAN----SSLKKLELSSNQIKEFSPGC----------FHAIGRLFGLFLNNVQ 206
Query: 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM---VQNGSSNVIVE 332
L ++ ++ L S++ +S T L + + S N
Sbjct: 207 L----GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN---- 258
Query: 333 YRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSL-- 388
+ ++ + F LP+ L NN+ + L
Sbjct: 259 -NLNVVGNDSFA--------------------WLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 389 -------------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L SF L L +N+ +N+ G +
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 57/347 (16%), Positives = 112/347 (32%), Gaps = 74/347 (21%)
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150
+ S S L+ + ++ L+L++NQL+ F + L SL
Sbjct: 3 TVSHEVADCSHLKLTQV----PDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVG 57
Query: 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHD 209
N I+ + + L L+L N+++ + K+F L L +
Sbjct: 58 FNTISKL-----------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVEL 269
N + F+ +L + L +N LS + G + +L EL
Sbjct: 107 NSIQKIKNNPFVKQK------NLITLDLSHNGLSSTKLGT----------QVQLENLQEL 150
Query: 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSN 328
L +N++ + + ++ L+ L+ S N I P C + + + ++
Sbjct: 151 LLSNNKI----QALKSEE-LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388
+ L + + + ++ +++ LS++ LS L
Sbjct: 206 QLGP---SLTEKLCLELANTSI-----------------RNLSLSNSQLSTTSNTTFLGL 245
Query: 389 --------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L SF+ L L L NN S+
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-28
Identities = 65/453 (14%), Positives = 132/453 (29%), Gaps = 84/453 (18%)
Query: 11 SLEDLQSINIGLNAIR-----VRKFDQWLSYHNKLTSL--------SLQGLDLREATDWL 57
L LQ I + V D Y + + L ++L +
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505
Query: 58 QV--VITGLPSLRELDLSS---SAPPKINYRSHSLVNSSS--SSLTHLHLSLCGLSN-SA 109
Q+ + LP L+ L+++ + ++ L + + ++ L A
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Query: 110 YHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168
L + L LD +N+++ AF L L N I I
Sbjct: 566 SASLQKM-VKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEI----------- 610
Query: 169 PKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC--LKTLKIHDNILTAKLPELFLNFSAG 226
P+ + + L S N++ IP F + ++ N + ++ + +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD- 669
Query: 227 CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS 286
+ + L N + + F S + + L +N + +
Sbjct: 670 YKGINASTVTLSYNEIQKFPTEL----------FATGSPISTIILSNNLMTSIPENSLKP 719
Query: 287 ATPKLCSSPMLQVLDFSHNNISGMVPT-CLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFD 344
++ +L +D N ++ + L + + S N P
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-------CFSSFPTQP 772
Query: 345 YQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL-----------LIGKI 393
L G+ D N + + P IT+ I K+
Sbjct: 773 LNSSQL-----------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821
Query: 394 PRSFSQLSHLGVVNLSNN-NFSGKIPSSIPLQT 425
L ++++++N N S + S P
Sbjct: 822 DEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-18
Identities = 46/318 (14%), Positives = 93/318 (29%), Gaps = 77/318 (24%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKINYRSHSLVNSSSS 93
+++ L L+ + + + +D S S I S S+ +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFN--AKSVYVMGSVDFSYNKIGSEGRNI---SCSMDDYKGI 673
Query: 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ------GPTPDYAFRNMTSLAS 147
+ + + LS + + S + + LSNN + D ++N L +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 148 LT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLK 206
+ N +T +S + + + L ++D+S N + P + LK
Sbjct: 733 IDLRFNKLTSLS----------DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782
Query: 207 IHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL 266
I + N + P SL
Sbjct: 783 IRHQRD------------------------AEGNRILRQW----------PTGITTCPSL 808
Query: 267 VELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM-VPTCLNNLSAMVQNG 325
++L + SN + KL L +LD + N + V + + A +
Sbjct: 809 IQLQIGSNDI--------RKVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVL 858
Query: 326 SSNVIVEYRIQLIDDPEF 343
+ + Q I +
Sbjct: 859 LYD-----KTQDIRGCDA 871
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 56/424 (13%), Positives = 111/424 (26%), Gaps = 98/424 (23%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTH 97
NKLT + + L+E ++++ LD + Y S ++ N+ S +
Sbjct: 249 NKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNW-----RYYSGTINNTIHSLNWN 303
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGI 157
+ L + L + + + L L+ +G PD
Sbjct: 304 FNKELDMWGDQPGVDLDNNGR-VTGLSLAGFGAKGRVPD--------------------- 341
Query: 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC-LKTLKIHDNILTAKL 216
A +T L L + T + FGD + + +
Sbjct: 342 --------------AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 217 PELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD-------------GTFPKQFCRP 263
++FL++ L + N + + + K R
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 264 SSLVELDLESNQL------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
+ L + ++ + + + L ++ + +
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507
Query: 312 PTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSI 370
P L +L + N + N + I + L D+ KI
Sbjct: 508 PDFLYDLPELQSLNIACN-------RGISAAQLKADWTRLA--DDEDTGPKIQ-----IF 553
Query: 371 DLSDNNLSGKIPEEI-----TSL--------LIGKIPRSFSQLSHLGVVNLSNNNFSGKI 417
+ NNL P L + + +F L + L N I
Sbjct: 554 YMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE-I 610
Query: 418 PSSI 421
P
Sbjct: 611 PEDF 614
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 14/163 (8%)
Query: 264 SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC-LNNLSAMV 322
+ L L G + L+VL F ++ + L+ +
Sbjct: 323 GRVTGLSLAGFGAK-------GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375
Query: 323 QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP 382
+ I + ++ D + LL + + I L D +
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN--- 432
Query: 383 EEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQT 425
+ I I ++ +L+ L ++ +N+ F+ +
Sbjct: 433 ---LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 76/419 (18%), Positives = 130/419 (31%), Gaps = 100/419 (23%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
SL ++ I F+ + S++LQ + L+EL
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGL--CEMSVESINLQKHYF---FNISSNTFHCFSGLQEL 283
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
DL+++ ++ LV S+ L L LS N S+ SL +L + N
Sbjct: 284 DLTAT---HLSELPSGLVGLST--LKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTK 337
Query: 131 QGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQI 189
+ N+ +L L S + I C+L N++ L L+LS N+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNL---------QLRNLSHLQSLNLSYNEP 388
Query: 190 TGIPK-SFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
+ +F + L+ L + L K + F N L+ L +++L S
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH------LLKVLNLSHSLLDISSE 442
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
+ F +L L+L+ N N T L + L++L S ++
Sbjct: 443 QL----------FDGLPALQHLNLQGNHF----PKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 308 SGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP 367
S + +L M
Sbjct: 489 SSIDQHAFTSLKMM---------------------------------------------- 502
Query: 368 KSIDLSDNNLSGKIPEEITSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFSG 415
+DLS N L+ E ++ L + +P LS +NL N
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 83/433 (19%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
+ + L+S+ +G N I K KL L Q + + ++ L L
Sbjct: 127 NQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKED---MSSLQQATNL 182
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS-KSLVYLDLSNNQ 129
L+ + + S+ L+ + L + + +SL +
Sbjct: 183 SLNLN---GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 130 LQGPTPDYAFRNMTSLASLTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLS 185
+ +P F + + S+ S+ +Y I F + L +LDL+
Sbjct: 240 DEDISPA-VFEGLCEM-SVESINLQKHYFFNI-----------SSNTFHCFSGLQELDLT 286
Query: 186 KNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245
++ +P + LK L + N NF SL ++ N
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF------PSLTHLSIKGNTKRLE 340
Query: 246 LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305
L +L ELDL + + + +L + LQ L+ S+N
Sbjct: 341 LG---------TGCLENLENLRELDLSHDDI-----ETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 306 NISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL 364
+ + + + R+++ D L
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFT-----RLKVKDAQSPFQNLHLL-------------- 427
Query: 365 GLPKSIDLSDNNLSGKIPEEITSL---------------LIGKIPRSFSQLSHLGVVNLS 409
K ++LS + L + L + S L L ++ LS
Sbjct: 428 ---KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 410 NNNFSGKIPSSIP 422
+ S +
Sbjct: 485 FCDLSSIDQHAFT 497
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 65/424 (15%), Positives = 117/424 (27%), Gaps = 87/424 (20%)
Query: 42 SLSLQGLDLREATDWLQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHL 100
+ + + L L E + LP S L+ S + P I + + S +LT L L
Sbjct: 16 TYNCENLGLNE-------IPGTLPNSTECLEFSFNVLPTIQ--NTTF--SRLINLTFLDL 64
Query: 101 SLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISK 159
+ C + L L L+ N L A +L L I+ I
Sbjct: 65 TRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSI-- 120
Query: 160 CSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPE 218
N +L L L N I+ I LK L +N + E
Sbjct: 121 ---------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171
Query: 219 LFLNFSAGCAKKSLQSFMLQNNMLSG------SLPGVTELD-------GTFPK--QFCRP 263
+ + + S L N ++G L+ K +
Sbjct: 172 DMSSLQ----QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
Query: 264 SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323
SL E I+ + LC ++ ++ + + + S + +
Sbjct: 228 QSLWLGTFEDMDD----EDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQE 282
Query: 324 -NGSSNVIVEYRIQLIDDPEFDYQDRALLVWK-------PIDSIYKITL-GLP--KSIDL 372
+ ++ + + L K +++ +I+ P + +
Sbjct: 283 LDLTAT-----HLSELPSGLVG-----LSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 373 SDNNLSGKIPEEITSLL---------------IGKIPRSFSQLSHLGVVNLSNNNFSGKI 417
N ++ L LSHL +NLS N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 418 PSSI 421
+
Sbjct: 393 TEAF 396
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 4e-20
Identities = 74/469 (15%), Positives = 137/469 (29%), Gaps = 112/469 (23%)
Query: 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELD 71
L +L +++ I + ++L +L L L + ++G +L+ L
Sbjct: 56 LINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAE---TALSGPKALKHLF 111
Query: 72 LSSSAPPKINY--RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ 129
+ + +L L+L +S+ ++ L LD NN
Sbjct: 112 FIQ------TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNA 164
Query: 130 LQGPTPDYAFRNMTSLASLT---SLNYITGISKCSLPITLVR--------------PKYA 172
+ + + ++ +L+ + N I GI + + +
Sbjct: 165 IHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223
Query: 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCC---LKTLKIHDNILTAKLPELFLNFSAGCAK 229
S + SL I + + C ++++ + + F FS
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS----- 278
Query: 230 KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ-------------- 275
LQ L LS P S+L +L L +N+
Sbjct: 279 -GLQELDLTATHLS-----------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326
Query: 276 ---LWLRFNHINGSATPK-LCSSPMLQVLDFSHNNI--SGMVPTCLNNLSAMVQNGSSNV 329
L ++ N L + L+ LD SH++I S L NLS
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS---------- 376
Query: 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL-GLP--KSIDLSDNNLSGKIPEEI- 385
+Q ++ L + S+ P + +DL+ L K +
Sbjct: 377 ----HLQSLN-----------LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 386 ---TSL---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
L L + F L L +NL N+F
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 28/239 (11%)
Query: 11 SLEDLQSINIGLNAIR-VRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRE 69
+LE+L+ +++ + I + L + L SL+L + P L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLEL 404
Query: 70 LDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ 129
LDL+ + ++ + + L L+LS L S+ + +L +L+L N
Sbjct: 405 LDLAFT---RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNH 460
Query: 130 LQGPTPD--YAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSK 186
+ + + L L S ++ I ++AF+++ + +DLS
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-----------DQHAFTSLKMMNHVDLSH 509
Query: 187 NQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245
N++T L + N ++ LP L S ++ L+ N L +
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS------QQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 41/311 (13%), Positives = 84/311 (27%), Gaps = 92/311 (29%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
+ S L+ S N L F + +L L + I I +
Sbjct: 29 GTLPNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWI-----------HEDT 76
Query: 173 FSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F + L L L+ N + + + LK L +++ N K+
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ------KT 130
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
L+S L +N +S L LD ++N + ++++ L
Sbjct: 131 LESLYLGSNHISSIKLPK----------GFPTEKLKVLDFQNNAI----HYLSKEDMSSL 176
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALL 351
+ L L+ + N+I+G+ P ++
Sbjct: 177 QQATNL-SLNLNGNDIAGIEPGAFDSAV-------------------------------- 203
Query: 352 VWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411
+S++ I + + S + L + +
Sbjct: 204 ---------------FQSLNFGGTQNLLVIFKGL----------KNSTIQSLWLGTFEDM 238
Query: 412 NFSGKIPSSIP 422
+ P+
Sbjct: 239 DDEDISPAVFE 249
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 39/261 (14%), Positives = 65/261 (24%), Gaps = 66/261 (25%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
+ + IP + + + L+ N+L F +L L
Sbjct: 17 YNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLI------NLTFLDLTRCQ 68
Query: 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301
+ F L L L +N L + +A L L+ L
Sbjct: 69 IYWIHEDT----------FQSQHRLDTLVLTANPL----IFMAETA---LSGPKALKHLF 111
Query: 302 FSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
F IS + L+N + SN I I P+
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSN-----HISSIKLPKGF---------------- 150
Query: 361 KITLGLP--KSIDLSDNNLSGKIPEEITSL-------------LIGKIPRSFSQLSHLGV 405
K +D +N + E+++SL I I +
Sbjct: 151 ----PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206
Query: 406 VNLSNNNFSGKIPSSIPLQTF 426
+N I + T
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTI 227
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 9e-26
Identities = 68/422 (16%), Positives = 118/422 (27%), Gaps = 109/422 (25%)
Query: 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHN--KLTSLSLQGLDLR---EATDWLQVVI 61
L L+ + L R + L +L+++ L D + +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 62 TGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLV 121
L ++ L S S + HL L C + KSL
Sbjct: 279 NCLTNVSSFSLVS------VTIERVKDFSYNFGWQHLELVNCKFGQF----PTLKLKSLK 328
Query: 122 YLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLM 180
L ++N+ ++ SL L S N ++ CS + TSL
Sbjct: 329 RLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQ---------SDFGTTSLK 376
Query: 181 DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLP-ELFLNFSAGCAKKSLQSFMLQN 239
LDLS N + + +F + L+ L + L +FL+ +L + +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR------NLIYLDISH 430
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
+ G+ F SSL L + N F L
Sbjct: 431 THTRVAFNGI----------FNGLSSLEVLKMAGNSFQENFLPDI------FTELRNLTF 474
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359
LD S + + PT N+LS++
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSL-------------------------------------- 496
Query: 360 YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419
+ +++S NN + L+ L V++ S N+
Sbjct: 497 --------QVLNMSHNNFFSLDTF------------PYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 420 SI 421
+
Sbjct: 537 EL 538
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 63/427 (14%), Positives = 123/427 (28%), Gaps = 58/427 (13%)
Query: 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS 73
+++++ N +R + S+ L L L +++ D L L L L+
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIED---GAYQSLSHLSTLILT 84
Query: 74 SSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
+ S SSL L L++ + H+ K+L L++++N +Q
Sbjct: 85 GNP----IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSF 139
Query: 134 TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL----MDLDLSKNQ 188
F N+T+L L S N I I + + + LDLS N
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 189 ITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248
+ I L L + +N + + + + L+ L
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-----GLAGLEVHRLVLGEFRNEGNL 243
Query: 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308
L L +E +L ++ + I
Sbjct: 244 EKFDKSAL-------EGLCNLTIEEFRL-AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 309 GMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP 367
+ + + Q + K ++ ++ L
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFG----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 368 KSIDLSDNNLS--GKIPEEITSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFS 414
+ +DLS N LS G + + + +F L L ++ ++N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 415 GKIPSSI 421
S+
Sbjct: 410 QMSEFSV 416
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-22
Identities = 59/337 (17%), Positives = 119/337 (35%), Gaps = 57/337 (16%)
Query: 102 LCGLSNSAYHCLS--------HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152
+ + N Y C+ ++ S LDLS N L+ +F + L L S
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC 62
Query: 153 YITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNI 211
I I A+ +++ L L L+ N I + +F + L+ L +
Sbjct: 63 EIQTI-----------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 212 LTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDL 271
L + + K+L+ + +N++ P+ F ++L LDL
Sbjct: 112 LASLENFPIGHL------KTLKELNVAHNLIQS---------FKLPEYFSNLTNLEHLDL 156
Query: 272 ESNQLWLRFNHINGSATPKLCSSPMLQV-LDFSHNNISGMVPTCLNNLS----AMVQNGS 326
SN++ I + L P+L + LD S N ++ + P + + N
Sbjct: 157 SSNKI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 327 SNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI---TLGLPKSIDLSDNNLSGKIPE 383
S +++ IQ + + L ++ ++ K L ++ + + L+
Sbjct: 213 SLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---- 266
Query: 384 EITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420
+ I F+ L+++ +L + S
Sbjct: 267 --LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 62/402 (15%), Positives = 102/402 (25%), Gaps = 104/402 (25%)
Query: 40 LTSLSLQGLDLREATDWLQV---VITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS--S 94
+ L L LR D L V I GL L L ++ +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 95 LTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL- 151
LT L L + + ++ L + ++ F L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVN 313
Query: 152 NYITGISKCSLPITLV--------RPKYAFSNVTSLMDLDLSKNQITG---IPKSFGDMC 200
L ++ ++ SL LDLS+N ++ +S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF 260
LK L + N + + FL L+ Q++ L F
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLE------QLEHLDFQHSNLKQMSE---------FSVF 417
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC-LNNLS 319
+L+ LD+ H + L+VL + N+ L
Sbjct: 418 LSLRNLIYLDISHT-------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 320 AMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSG 379
+ +DLS L
Sbjct: 471 NL----------------------------------------------TFLDLSQCQLEQ 484
Query: 380 KIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
P +F+ LS L V+N+S+NNF
Sbjct: 485 LSPT------------AFNSLSSLQVLNMSHNNFFSLDTFPY 514
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 82/239 (34%)
Query: 183 DLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242
+ IP + K L + N L F +F LQ L +
Sbjct: 13 QCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEI 64
Query: 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302
G + S L L L N + A LQ L
Sbjct: 65 QTIEDGA----------YQSLSHLSTLILTGNPI-------QSLALGAFSGLSSLQKLVA 107
Query: 303 SHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI 362
N++ + + +L +
Sbjct: 108 VETNLASLENFPIGHLKTL----------------------------------------- 126
Query: 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
K ++++ N + K+P FS L++L ++LS+N + +
Sbjct: 127 -----KELNVAHNLIQS-----------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 38/251 (15%), Positives = 67/251 (26%), Gaps = 87/251 (34%)
Query: 177 TSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
S +LDLS N + + SF L+ L + + + + S L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------HLSTL 81
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP 295
+L N + G F SSL +L L +
Sbjct: 82 ILTGNPIQSLALGA----------FSGLSSLQKLVAVETNL-------ASLENFPIGHLK 124
Query: 296 MLQVLDFSHNNISGM-VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWK 354
L+ L+ +HN I +P +NL+ +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNL--------------------------------- 151
Query: 355 PIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVV----NLSN 410
+ +DLS N + L + ++ +LS
Sbjct: 152 -------------EHLDLSSNKIQSIYCT------------DLRVLHQMPLLNLSLDLSL 186
Query: 411 NNFSGKIPSSI 421
N + P +
Sbjct: 187 NPMNFIQPGAF 197
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 67/414 (16%), Positives = 126/414 (30%), Gaps = 74/414 (17%)
Query: 61 ITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120
GL L L L+ + + S +S L +L L++ + + +L
Sbjct: 76 WHGLHHLSNLILTGNPIQSFS--PGSFSGLTS--LENLVAVETKLASLESFPIGQL-ITL 130
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L++++N + F N+T+L + S NYI I+ L ++ N
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-------QFLRENPQVN 183
Query: 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
+ LD+S N I I L L + N ++ + + L AG L ++
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 240 NMLSGSLP----------GVTELDGTF-------PKQFCRPSSLVELDLESNQ------- 275
+ E T+ +F +++ + L
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
Query: 276 --------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLSAMVQNGS 326
L + + T L P L+ L + N S L +LS + + S
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFKKVALPSLSYL--DLS 358
Query: 327 SNVIVEYRIQLIDDPEFDYQDRALLV----WKPIDSIYKITLGLP--KSIDLSDNNLSGK 380
N + D +L + + +GL + +D + L
Sbjct: 359 RNALSF----SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414
Query: 381 IPEEI----TSL---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L F L+ L + ++ N+F S++
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-22
Identities = 56/262 (21%), Positives = 86/262 (32%), Gaps = 42/262 (16%)
Query: 37 HNKLTSL------SLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90
+L L+ L L + LPSL LDLS +A S +
Sbjct: 316 RCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS--GCCSYSDL 373
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT- 149
++SL HL LS G + + + + L +LD ++ L+ T AF ++ L L
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 150 SLNYITGISKCSL--------------PITLVRPKYAFSNVTSLMDLDLSKNQITGIPK- 194
S F+N T+L LDLSK Q+ I
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
Query: 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDG 254
F + L+ L + N L + SL + N + S +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLY------SLSTLDCSFNRIETSKGIL----- 540
Query: 255 TFPKQFCRPSSLVELDLESNQL 276
P SL +L +N +
Sbjct: 541 -----QHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-22
Identities = 66/312 (21%), Positives = 104/312 (33%), Gaps = 52/312 (16%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
L ++ ++++ +I+ + + H K SLS+ L+ Q LP L+ L
Sbjct: 283 CLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLK------QFPTLDLPFLKSL 333
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS-KSLVYLDLSNNQ 129
L+ N S S + SL++L LS LS S S + SL +LDLS N
Sbjct: 334 TLTM------NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 130 LQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ 188
F + L L + + +++ S AF ++ L+ LD+S
Sbjct: 388 AI--IMSANFMGLEELQHLDFQHSTLKRVTEFS----------AFLSLEKLLYLDISYTN 435
Query: 189 ITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
F + L TLK+ N + +L L L
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-----TNLTFLDLSKCQLEQISW 490
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
GV F L L++ N L ++ S L LD S N I
Sbjct: 491 GV----------FDTLHRLQLLNMSHNNL----LFLDSSH---YNQLYSLSTLDCSFNRI 533
Query: 308 SGMVPTCLNNLS 319
+
Sbjct: 534 ETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-21
Identities = 71/469 (15%), Positives = 118/469 (25%), Gaps = 103/469 (21%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
L L+ +N+ HN + S L + L +L +
Sbjct: 126 QLITLKKLNVA---------------HNFIHSCKLPA------------YFSNLTNLVHV 158
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
DLS + I + + L +SL + I L L L N
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRGNFN 216
Query: 131 QGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL--MDLDLSKNQ 188
+N LA L I G K + + P + + + L+
Sbjct: 217 SSNIMKTCLQN---LAGLHVHRLILGEFKDERNLEIFEPS-IMEGLCDVTIDEFRLTYTN 272
Query: 189 ITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG--- 244
F + + + + + QS + L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIK--------YLEDVPKHFKWQSLSIIRCQLKQFPT 324
Query: 245 -SLPGVTELD-----GTFPKQFCRPSSLVELDLESNQ-------------------LWLR 279
LP + L G+ + SL LDL N L L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 280 FNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT-CLNNLSAMVQ-NGSSNVIVEYRIQL 337
FN + LQ LDF H+ + + +L ++ + S ++
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-----NTKI 438
Query: 338 IDDPEFDYQDRALLVW------KPIDSIYKITLGLPKS---IDLSDNNLSGKIPEEITSL 388
D F L D+ + +DLS L +L
Sbjct: 439 DFDGIFLGLTS--LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 389 ------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQT 425
L+ ++QL L ++ S N
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 60/406 (14%), Positives = 106/406 (26%), Gaps = 113/406 (27%)
Query: 40 LTSLSLQGLDLR--EATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTH 97
L +++ L V L ++ + L+ +
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG------VSIKYLEDVPKHFKWQS 311
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG 156
L + C L L L L L+ N+ + + SL+ L S N ++
Sbjct: 312 LSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSF 364
Query: 157 ISKCSLPI--------------TLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMC 200
CS + F + L LD + + + + +F +
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF 260
L L I +FL + SL + + N + F
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLT------SLNTLKMAGNSFKDNTL---------SNVF 469
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
++L LDL QL I+ L LQ+L+ SHNN+ + + N L +
Sbjct: 470 ANTTNLTFLDLSKCQL----EQISWGVFDTLHR---LQLLNMSHNNLLFLDSSHYNQLYS 522
Query: 321 MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380
+ ++D S N +
Sbjct: 523 L----------------------------------------------STLDCSFNRIETS 536
Query: 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF 426
L NL+NN+ + I +
Sbjct: 537 KGI------------LQHFPKSLAFFNLTNNSVA-CICEHQKFLQW 569
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 7e-21
Identities = 64/385 (16%), Positives = 120/385 (31%), Gaps = 59/385 (15%)
Query: 57 LQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115
L V +P S + +DLS + + S+S S+ S L L LS C +
Sbjct: 23 LSKVPDDIPSSTKNIDLSFNPLKILK--SYSF--SNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFS 174
+ L L L+ N +Q +P +F +TSL +L + + +
Sbjct: 79 L-HHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASL-----------ESFPIG 125
Query: 175 NVTSLMDLDLSKNQITGI--PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232
+ +L L+++ N I P F ++ L + + N + +
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN--PQVN 183
Query: 233 QSFMLQNNMLSGSLPGV------TELD--------GTFPKQFCRPSSLVELDLESNQLW- 277
S + N + EL + L L +
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 278 -LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336
S LC + + ++ N + L+ + + V I+
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGV----SIK 298
Query: 337 LIDDPEFDYQDRAL-LVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPR 395
++D ++ ++L ++ + + L KS+ L+ N S I
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--------------ISF 344
Query: 396 SFSQLSHLGVVNLSNNNFSGKIPSS 420
L L ++LS N S S
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCS 369
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 20/184 (10%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
LE+LQ ++ + ++ KL L + + + GL SL L
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT---KIDFDGIFLGLTSLNTL 453
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
++ + + S V +++++LT L LS C L ++ + L L++S+N L
Sbjct: 454 KMAGN---SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNL 509
Query: 131 QGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQI 189
+ + SL++L S N I SL +L+ N +
Sbjct: 510 LFLDSS-HYNQLYSLSTLDCSFNRIETS-----------KGILQHFPKSLAFFNLTNNSV 557
Query: 190 TGIP 193
I
Sbjct: 558 ACIC 561
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 41/281 (14%), Positives = 69/281 (24%), Gaps = 64/281 (22%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
+++ +P K + + N L F NFS LQ L
Sbjct: 16 YQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS------ELQWLDLSRCE 67
Query: 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301
+ + L L L N + + + L+ L
Sbjct: 68 IETIEDKA----------WHGLHHLSNLILTGNPIQ----SFSPGS---FSGLTSLENLV 110
Query: 302 FSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
++ + + L + + N + N I P + L
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHN-----FIHSCKLPAYFSNLTNL---------- 155
Query: 361 KITLGLPKSIDLSDNNLSGKIPEEITSL---------------LIGKIPRSFSQLSHLGV 405
+DLS N + ++ L I I Q L
Sbjct: 156 -------VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208
Query: 406 VNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVE 446
+ L N S I + LQ F+ N+E
Sbjct: 209 LTLRGNFNSSNIMKTC-LQNLAGLHVHRLILGEFKDERNLE 248
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 67/377 (17%), Positives = 129/377 (34%), Gaps = 88/377 (23%)
Query: 57 LQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115
V G+P R LDL + + + +S L L L+ +S ++
Sbjct: 23 FVAVPEGIPTETRLLDLGKNRIKTL----NQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFS 174
+ +L L L +N+L+ P F +++L L S N I + Y F
Sbjct: 79 LF-NLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVIL-----------LDYMFQ 125
Query: 175 NVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
++ +L L++ N + I ++F + L+ L + LT+ E + L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH------GLI 179
Query: 234 SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293
L++ ++ ++ F R L L++ +++ + TP
Sbjct: 180 VLRLRHLNIN-AIR---------DYSFKRLYRLKVLEISHW------PYLD-TMTPNCLY 222
Query: 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLV 352
L L +H N++ + + +L + N S N I I+
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-----PISTIEGSMLH-------- 269
Query: 353 WKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSN 410
L + I L L+ + P +F L++L V+N+S
Sbjct: 270 ------------ELLRLQEIQLVGGQLA-VVE-----------PYAFRGLNYLRVLNVSG 305
Query: 411 NNFSGKIPSSIPLQTFE 427
N +++ F
Sbjct: 306 NQL-----TTLEESVFH 317
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 66/384 (17%), Positives = 128/384 (33%), Gaps = 97/384 (25%)
Query: 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS-HSLVNSSSSSL 95
N++ +L+ P L EL+L+ + + + ++L +L
Sbjct: 41 KNRIKTLNQDEF-------------ASFPHLEELELNENIVSAVEPGAFNNL-----FNL 82
Query: 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYI 154
L L L + +S +L LD+S N++ DY F+++ +L SL N +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDL 140
Query: 155 TGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILT 213
I AFS + SL L L K +T IP + + L L++ +
Sbjct: 141 VYI-----------SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLES 273
A F L+ + + ++ +L L +
Sbjct: 190 AIRDYSFKRLY------RLKVLEISHWPYLDTMTP----------NCLYGLNLTSLSITH 233
Query: 274 NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVE 332
L + A L L+ L+ S+N IS + + L+ L + +
Sbjct: 234 CNL----TAVPYLAVRHL---VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG---- 282
Query: 333 YRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSLLI 390
++ +++ F GL +++S N L+ + E +
Sbjct: 283 -QLAVVEPYAFR--------------------GLNYLRVLNVSGNQLT-TLEESV----- 315
Query: 391 GKIPRSFSQLSHLGVVNLSNNNFS 414
F + +L + L +N +
Sbjct: 316 ------FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 62/326 (19%), Positives = 111/326 (34%), Gaps = 56/326 (17%)
Query: 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS 73
+ + +++G N I+ D++ S+ + L L L + L +LR L L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEP---GAFNNLFNLRTLGLR 88
Query: 74 SSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
S+ I V + S+LT L +S + + + +L L++ +N L
Sbjct: 89 SNRLKLI----PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVY- 142
Query: 134 TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192
AF + SL LT +T I P A S++ L+ L L I I
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSI-----------PTEALSHLHGLIVLRLRHLNINAI 191
Query: 193 P-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251
SF + LK L+I + L +L S + + L+ ++P
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------GLNLTSLSITHCNLT-AVP---- 240
Query: 252 LDGTFPKQFCRPSSLVELDLESNQ-----------------LWLRFNHINGSATPKLCSS 294
L L+L N + L +
Sbjct: 241 -----YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 295 PMLQVLDFSHNNISGMVPTCLNNLSA 320
L+VL+ S N ++ + + +++
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGN 321
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 63/301 (20%), Positives = 112/301 (37%), Gaps = 69/301 (22%)
Query: 36 YHNKLTSL---------SLQGLDLRE------ATDWLQVVITGLPSLRELDLSSSAPPKI 80
N+L + +L LD+ E Q L +L+ L++ + I
Sbjct: 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ----DLYNLKSLEVGDNDLVYI 143
Query: 81 NYRS-HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAF 139
++R+ L +SL L L C L++ LSH+ L+ L L + + DY+F
Sbjct: 144 SHRAFSGL-----NSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINA-IRDYSF 196
Query: 140 RNMTSLASL--TSLNYITGISKCSL-------------PITLVRPKYAFSNVTSLMDLDL 184
+ + L L + Y+ ++ L +T V P A ++ L L+L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNL 255
Query: 185 SKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243
S N I+ I ++ L+ +++ L P F + L+ + N L+
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN------YLRVLNVSGNQLT 309
Query: 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQL-------WL--RFNHINGSATPKLCSS 294
+L F +L L L+SN L W+ R +N + C++
Sbjct: 310 -TLE---------ESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359
Query: 295 P 295
P
Sbjct: 360 P 360
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 42/201 (20%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELD 71
L L+ + + + + LS+ + L L L+ L++ D+ L L+ L+
Sbjct: 151 LNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLE 206
Query: 72 LSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131
+S P ++ + + + + LT L ++ C L+ Y + H+ L +L+LS N +
Sbjct: 207 ISHW--PYLDTMTPNCLYGLN--LTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPIS 261
Query: 132 GPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT 190
+ L + + + YAF + L L++S NQ+T
Sbjct: 262 TIEGS-MLHELLRLQEIQLVGGQLAVV-----------EPYAFRGLNYLRVLNVSGNQLT 309
Query: 191 GIPKS-FGDMCCLKTLKIHDN 210
+ +S F + L+TL + N
Sbjct: 310 TLEESVFHSVGNLETLILDSN 330
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 66/393 (16%), Positives = 117/393 (29%), Gaps = 68/393 (17%)
Query: 57 LQVVITGLPSLRELDLS----SSAPP-----------------KINYRSHSLVNSSSSSL 95
L V L + L LS + + +L
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPT-PDYAFRNMTSLASLT-SLNY 153
L L + + L L L L D FRN+ +L L S N
Sbjct: 76 RILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK---SFGDMCCLKTLKIHDN 210
I + +F + SL +D S NQI + + L + N
Sbjct: 135 IRSLYLHP----------SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 211 ILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV--TELDGTFPKQFCRPSSLVE 268
L +++ + L+ + N + + G + + ++
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 269 LDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSS 327
+ + + + L S ++ LD SH + + L + N +
Sbjct: 245 AGFGFHNI----KDPDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 328 NVIVEYRIQLIDDPEFDYQD--RAL-LVWKPIDSIYKITL-GLP--KSIDLSDNNLSGKI 381
N +I I D F D + L L + + +Y GLP IDL N+++ I
Sbjct: 300 N-----KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-II 353
Query: 382 PEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414
++F L L ++L +N +
Sbjct: 354 Q-----------DQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 2e-21
Identities = 70/453 (15%), Positives = 132/453 (29%), Gaps = 63/453 (13%)
Query: 1 MQISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVV 60
+ I + F +L +L+ +++G + I L L L L +A
Sbjct: 62 LTIDKEAFR-NLPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAV-LKDGY 118
Query: 61 ITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS-KS 119
L +L LDLS + + +SL + S + H L + K+
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHP---SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT------SLNYITGISKCSLPITL-VRPKYA 172
L + L+ N L + M ++ S N T + + ++
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 173 FSNVTSLMDLDLSKNQITGIPKS-FGDMCC--LKTLKIHDNILTAKLPELFLNFSAGCAK 229
+M + I ++ F + ++ L + + + +F
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL------ 289
Query: 230 KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP 289
K L+ L N ++ + + F +L L+L N L + S
Sbjct: 290 KDLKVLNLAYNKIN-KIA---------DEAFYGLDNLQVLNLSYNLL----GELYSSN-- 333
Query: 290 KLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM-VQNGSSNVIVEYRIQLIDDPEFDYQDR 348
P + +D N+I+ + L + + N L
Sbjct: 334 -FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-------ALTTIHFIPSIPD 385
Query: 349 ALLVWKPIDSIYKITLGLPKSIDLSDNNLS----GKIPEEITSL--------LIGKIPRS 396
L + ++ KI L I LS+N L + L
Sbjct: 386 IFLSGNKLVTLPKINLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 397 --FSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
S+ L + L N + + FE
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 78/463 (16%), Positives = 158/463 (34%), Gaps = 68/463 (14%)
Query: 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLRE---ATDWLQVVITGLP 65
+ + L ++ N++ R W N ++ L+ LD+ D +
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229
Query: 66 SLRELDLSSSAPPKINYRSH---------SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHI 116
+ L + + + SS+ HL LS + + +
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSN 175
K L L+L+ N++ D AF + +L L S N + + F
Sbjct: 290 -KDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGEL-----------YSSNFYG 336
Query: 176 VTSLMDLDLSKNQITGIPK-SFGDMCCLKTL-----KIHDNILTAKLPELFLNFSAGCAK 229
+ + +DL KN I I +F + L+TL + +P++FL+ G
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS---GNKL 393
Query: 230 KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ-------------- 275
+L L N++ S + LD + R L L L N+
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYF--LLRVPHLQILILNQNRFSSCSGDQTPSENP 451
Query: 276 ----LWLRFNHINGSATPKLCSS-----PMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NG 325
L+L N + + +LC LQVL +HN ++ + P ++L+A+ +
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWK-PIDSIYKITLGLPKSIDLSDNNLSGKIPEE 384
+SN R+ ++ + L + + + + +D++ N +
Sbjct: 512 NSN-----RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566
Query: 385 ITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
+ + + + + ++FSG S+ + +
Sbjct: 567 TFINWLNHTNVTIAGPPA-DIYCVYPDSFSGVSLFSLSTEGCD 608
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 48/277 (17%), Positives = 79/277 (28%), Gaps = 57/277 (20%)
Query: 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKL-PELFLNFSAGCAKK 230
+ + L LS N I + SF + L+ L++ + E F N
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL------P 73
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ--------------- 275
+L+ L ++ + L P F L EL L
Sbjct: 74 NLRILDLGSSKIY-FLH---------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 276 ----LWLRFNHING-SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI 330
L L N I P L+ +DFS N I + L L Q + +
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL----QGKTLSFF 179
Query: 331 VEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLI 390
L D+ K ++ + L + +D+S N + I ++ +
Sbjct: 180 SLAANSLYSRVSVDWG-------KCMNPFRNMVL---EILDVSGNGWTVDITGNFSNAIS 229
Query: 391 GKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
S H+ +N TF
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNI-----KDPDQNTFA 261
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 9e-22
Identities = 64/368 (17%), Positives = 126/368 (34%), Gaps = 90/368 (24%)
Query: 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143
+ + ++ + + L + + L+L++ Q++ YAF
Sbjct: 36 YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEE-IDTYAFAYAH 93
Query: 144 SLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCC 201
++ L N I + P + F NV L L L +N ++ +P+ F +
Sbjct: 94 TIQKLYMGFNAIRYL-----------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 202 LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS----GSLPGVTELD--GT 255
L TL + +N L + F + SLQ+ L +N L+ +P + +
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATT------SLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 256 FPKQFCRPSSLVELDLESNQ--------------LWLRFNHINGSATPKLCSSPMLQVLD 301
P ++ ELD N L L+ N++ + T L + P L +D
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVD 254
Query: 302 FSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
S+N + ++ + + + S+N + ++
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNN--------------------------RLVALN 288
Query: 361 KITLGLP--KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
+P K +DLS N+L + R+ Q L + L +N+
Sbjct: 289 LYGQPIPTLKVLDLSHNHLL-------------HVERNQPQFDRLENLYLDHNSI----- 330
Query: 419 SSIPLQTF 426
++ L T
Sbjct: 331 VTLKLSTH 338
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 44/251 (17%), Positives = 78/251 (31%), Gaps = 58/251 (23%)
Query: 36 YHNKLTSL---------SLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86
+N L + SLQ L L V ++ +PSL ++S + +
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSLIPSLFHANVSYNLLSTL------ 201
Query: 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146
+ ++ L S ++ ++ L L L +N L N L
Sbjct: 202 ---AIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA---WLLNYPGLV 251
Query: 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTL 205
+ S N + I + F + L L +S N++ + + LK L
Sbjct: 252 EVDLSYNELEKI-----------MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
Query: 206 KIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSS 265
+ N L + F L++ L +N + +L T +
Sbjct: 301 DLSHNHLL-HVERNQPQFD------RLENLYLDHNSIV-TLKL-----STHH-------T 340
Query: 266 LVELDLESNQL 276
L L L N
Sbjct: 341 LKNLTLSHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 58/353 (16%), Positives = 102/353 (28%), Gaps = 79/353 (22%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI 61
+ I+L + + + + +R L ++ L+L L + E
Sbjct: 34 DVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-LDSFRQVELLNLNDLQIEEIDT---YAF 89
Query: 62 TGLPSLRELDLS----SSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS 117
++++L + PP + + LT L L LS+ +
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVF--------QNVPLLTVLVLERNDLSSLPRGIFHNTP 141
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSL------------------ASLTSL----NYIT 155
L L +SNN L+ D F+ TSL SL N ++
Sbjct: 142 -KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199
Query: 156 GISKCSL---------PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLK 206
++ I +V +T L L N +T + L +
Sbjct: 200 TLAIPIAVEELDASHNSINVV-RGPVNVELTIL---KLQHNNLTDTA-WLLNYPGLVEVD 254
Query: 207 IHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL 266
+ N L + F+ + L+ + NN L +L
Sbjct: 255 LSYNELEKIMYHPFVKM------QRLERLYISNNRLV-----------ALNLYGQPIPTL 297
Query: 267 VELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
LDL N L L+ L HN+I + + + L
Sbjct: 298 KVLDLSHNHL--------LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 59/384 (15%), Positives = 109/384 (28%), Gaps = 122/384 (31%)
Query: 84 SHSLVNSSSSSLTHLH-LSLCGLSNSAYHCLSHIS-KSLVYLDLSNNQLQGPTPDYAFRN 141
+ ++S+ + + + + Y I+ + + N+ +
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM----------- 57
Query: 142 MTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMC 200
L P + + L+L+ QI I +F
Sbjct: 58 -------RKL-----------------PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93
Query: 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS-------GSLPGVTELD 253
++ L + N + P +F N L +L+ N LS + P +T L
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVP------LLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147
Query: 254 ------GTFPKQ-FCRPSSLVELDLESNQ--------------LWLRFNHINGSATPKLC 292
F +SL L L SN+ + +N ++ L
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLA 202
Query: 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLV 352
++ LD SHN+I+ + L+ + N L D
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTIL--KLQHN-------NLTDTAWLL-------- 245
Query: 353 WKPIDSIYKITLGLP--KSIDLSDNNLSGKIPEEI----TSL--------LIGKIPRSFS 398
P +DLS N L KI L + +
Sbjct: 246 ------------NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292
Query: 399 QLSHLGVVNLSNNNFSGKIPSSIP 422
+ L V++LS+N+ + + P
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQP 315
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-20
Identities = 69/408 (16%), Positives = 132/408 (32%), Gaps = 67/408 (16%)
Query: 60 VITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119
+ +L+ L L SS I S SL HL LS LS+ + +S S
Sbjct: 45 DLRACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-S 99
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASL--TSLNYITGISKCSLPITLVRPKYAFSNVT 177
L YL+L N Q F N+T+L +L ++ + I + F+ +T
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-----------RRIDFAGLT 148
Query: 178 SLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFS------------ 224
SL +L++ + S + + L +H + L S
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Query: 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF---PKQFCRPSSLVELDLESNQL----W 277
A L + + M + G D +F K L E++ + L
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268
Query: 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQ 336
+ + + + ++ L + + T + L + + ++ ++
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-----KVF 323
Query: 337 LIDDPEFDYQDR---------ALLVWKPIDSIYKITLGLPKSIDLSDNNLS--GKIPEEI 385
L+ + ++ +S K +++ LS N+L K E +
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 386 TSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
+L +P S + +NLS+ + + IP
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP 430
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 6e-17
Identities = 47/336 (13%), Positives = 105/336 (31%), Gaps = 62/336 (18%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREAT-DWLQVVITGLPSLRE 69
S+ L+ + L + + + L+ +G L + + + L ++ + L E
Sbjct: 197 SVRYLELRDTNLARFQFSPLPV-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 70 LDLSS-------SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVY 122
++ P + L + ++ LH+ L S + K +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKR 314
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASL-------TSLNYITGISKCSLP------------ 163
+ + N+++ +++ SL L K + P
Sbjct: 315 ITVENSKVFLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF 223
++ + + +L LD+S+N +P S ++ L + + +
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--- 430
Query: 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHI 283
++L+ + NN L +F L EL + N+L
Sbjct: 431 ------QTLEVLDVSNNNLD-----------SFSLFL---PRLQELYISRNKL------- 463
Query: 284 NGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
P P+L V+ S N + + + L+
Sbjct: 464 --KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 97/420 (23%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
S+ D+ + + L+ + + + + L L+ +L V +++L
Sbjct: 170 SIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGL---------SNSAYHCLSHISK-SL 120
S ++ + L+ + C L + L + ++
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L + L + + + +T + + + P ++ SL
Sbjct: 289 RRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLV-----------PCSFSQHLKSL 336
Query: 180 MDLDLSKNQITGI----PKSFGDMCCLKTLKIHDNILTA--KLPELFLNFSAGCAKKSLQ 233
LDLS+N + G L+TL + N L + K E+ L K+L
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL------KNLT 390
Query: 234 SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293
S + N P P + L+L S + K C
Sbjct: 391 SLDISRNTFH-----------PMPDSCQWPEKMRFLNLSSTGI----------RVVKTCI 429
Query: 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVW 353
L+VLD S+NN+ L L + S N +++ + D L
Sbjct: 430 PQTLEVLDVSNNNLD-SFSLFLPRLQEL--YISRN-----KLKTLPDASLF---PVL--- 475
Query: 354 KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNF 413
+ +S N L +P+ I F +L+ L + L N +
Sbjct: 476 --------------LVMKISRNQLK-SVPDGI-----------FDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 44/318 (13%), Positives = 107/318 (33%), Gaps = 45/318 (14%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
S ++ ++ LDLS N++ R +L L + I I A
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTI-----------EGDA 69
Query: 173 FSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTA-KLPELFLNFSAGCAKK 230
F ++ SL LDLS N ++ + S FG + LK L + N + LF N +
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------ 123
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPK 290
+LQ+ + N + + F +SL EL++++ L + +
Sbjct: 124 NLQTLRIGNVETFSEIRRID---------FAGLTSLNELEIKALSL----RNYQSQSLKS 170
Query: 291 LCSSPMLQVLDFSHNNISGMVPTCLNNLSAM-------VQNGSSNVIVEYRIQLIDDPEF 343
+ + L + + ++ + LS++ ++ +
Sbjct: 171 I---RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227
Query: 344 DYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPR-SFSQLSH 402
++L + + + K+ + + ++ ++ + + + +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 403 LGVVNLSNNNFSGKIPSS 420
+ +++ + +
Sbjct: 288 IRRLHIPQFYLFYDLSTV 305
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-20
Identities = 77/416 (18%), Positives = 132/416 (31%), Gaps = 66/416 (15%)
Query: 36 YHNKLTSL------SLQGLDLR--EATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87
+ S + LDL P L+ LDLS I
Sbjct: 15 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDG 70
Query: 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147
S S L+ L L+ + + A S +S SL L L ++ ++ +L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLAS-LENFPIGHLKTLKE 128
Query: 148 LT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLK-- 203
L + N I FSN+T+L LDLS N+I I + +
Sbjct: 129 LNVAHNLIQSFKLPE----------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 204 --TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC 261
+L + N + P F L L+NN S ++
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-------LHKLTLRNNFDSLNVM---------KTCIQ 222
Query: 262 RPSSLVELDLESNQL--WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
+ L L + + SA LC+ + + ++ + + +L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE-FRLAYLDYY---LDDIIDLF 278
Query: 320 AMVQNGSSNVIVEYRIQLIDDPEFDYQDRAL-LVWKPIDSIYKITLGLPKSIDLSDNNLS 378
+ N SS +V I+ + D +++ + L LV + L K + + N
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 379 GKIPE-EITSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
E ++ SL G +S + L ++LS N + S+
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 6e-19
Identities = 60/407 (14%), Positives = 119/407 (29%), Gaps = 80/407 (19%)
Query: 40 LTSLSLQGLDLRE---ATDWLQVVITGLPSLRELDLSSSAPPKIN----YRSHSLVNSSS 92
+ L L LR + + ++ I GL L L + +L +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASL-TSL 151
++ L+ L + ++ L + ++ L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 152 NYITGISKCSLP-ITLVRPK----YAFSNVTSLMDLDLSKNQITGI---PKSFGDMCCLK 203
+ SL +T K ++ ++ SL LDLS+N ++ +S LK
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 204 TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRP 263
L + N + + FL L+ Q++ L F
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLE------QLEHLDFQHSNLKQMSE---------FSVFLSL 420
Query: 264 SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT-CLNNLSAMV 322
+L+ LD+ L S L+VL + N+ L +
Sbjct: 421 RNLIYLDISHTHT----RVAFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 323 Q-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP--KSIDLSDNNLSG 379
+ S +++ + F+ L + ++++ N L
Sbjct: 474 FLDLSQC-----QLEQLSPTAFN--------------------SLSSLQVLNMASNQLK- 507
Query: 380 KIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF 426
+P+ I F +L+ L + L N + P L +
Sbjct: 508 SVPDGI-----------FDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-18
Identities = 72/445 (16%), Positives = 129/445 (28%), Gaps = 114/445 (25%)
Query: 36 YHNKLTSL---------SLQGLDLRE---ATDWLQVVITGLPSLRELDLSSSAPPKINYR 83
L SL +L+ L++ + L + L +L LDLSS+ I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143
+++ L LSL ++ I L L L NN + +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 144 SLASLT-------SLNYITGISK----------------CSLPITLVRPKYAFSNVTSLM 180
L + + K L L F+ +T++
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 181 DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
L I + F + L++ + + P L L KSL+ +N
Sbjct: 286 SFSLVSVTIERVK-DFSYNFGWQHLELVNCKFG-QFPTLKL--------KSLKRLTFTSN 335
Query: 241 MLSG-----SLPGVTELD---------GTFPKQFCRPSSLVELDLESNQLWLRFNHINGS 286
LP + LD G + +SL LDL N + +
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--------IT 387
Query: 287 ATPKLCSSPMLQVLDFSHNNISGMVPTC-LNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFD 344
+ L+ LDF H+N+ M +L ++ + S ++ + F+
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFN 442
Query: 345 YQDRALLVWKPIDSIYKITLGLP--KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402
GL + + ++ N+ P F++L +
Sbjct: 443 --------------------GLSSLEVLKMAGNSFQENFL-----------PDIFTELRN 471
Query: 403 LGVVNLSNNNFSGKIPSSIPLQTFE 427
L ++LS + F
Sbjct: 472 LTFLDLSQCQL-----EQLSPTAFN 491
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 5e-17
Identities = 59/327 (18%), Positives = 104/327 (31%), Gaps = 49/327 (14%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYH--NKLTSLSLQGLDLREATDWLQVVITGLPSLR 68
L L+ + L R + L +L+++ L +L +I L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 69 ELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNN 128
+ S I N L ++ KSL L ++N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL-------KSLKRLTFTSN 335
Query: 129 QLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN 187
+ ++ ++ SL L S N ++ CS + TSL LDLS N
Sbjct: 336 KGGNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQ---------SDFGTTSLKYLDLSFN 383
Query: 188 QITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
+ + +F + L+ L + L FS + ++L + + +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 248 GV-------TELD--------GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC 292
G+ L P F +L LDL QL ++ +A L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSL- 493
Query: 293 SSPMLQVLDFSHNNISGMVPTCLNNLS 319
LQVL+ + N + + + L+
Sbjct: 494 --SSLQVLNMASNQLKSVPDGIFDRLT 518
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 51/294 (17%), Positives = 82/294 (27%), Gaps = 69/294 (23%)
Query: 177 TSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
S +LDLS N + + SF L+ L + + + + L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL------SHLSTL 81
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ-----------------LWL 278
+L N + G F SSL +L L +
Sbjct: 82 ILTGNPIQSLALGA----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 279 RFNHINGSATPK-LCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQL 337
N I P+ + L+ LD S N I + T L L M S + +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 338 IDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSF 397
I F +I L + L +N S + +
Sbjct: 192 IQPGAFK----------------EIRL---HKLTLRNNFDSLNVMKTC-----------I 221
Query: 398 SQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYA 451
L+ L V L F + L+ F+ SA + + + Y
Sbjct: 222 QGLAGLEVHRLVLGEFR----NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 6e-20
Identities = 64/369 (17%), Positives = 125/369 (33%), Gaps = 90/369 (24%)
Query: 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143
+ + ++ + + L + + L+L++ Q++ YAF
Sbjct: 42 YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEI-DTYAFAYAH 99
Query: 144 SLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCC 201
++ L N I + P + F NV L L L +N ++ +P+ F +
Sbjct: 100 TIQKLYMGFNAIRYL-----------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 202 LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS----GSLPGVTELD--GT 255
L TL + +N L + F SLQ+ L +N L+ +P + +
Sbjct: 149 LTTLSMSNNNLERIEDDTFQAT------TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 256 FPKQFCRPSSLVELDLESNQ--------------LWLRFNHINGSATPKLCSSPMLQVLD 301
P ++ ELD N L L+ N++ + T L + P L +D
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVD 260
Query: 302 FSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
S+N + ++ + + + S+N + ++
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNN--------------------------RLVALN 294
Query: 361 KITLGLP--KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
+P K +DLS N+L + R+ Q L + L +N+
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL-------------HVERNQPQFDRLENLYLDHNSI----- 336
Query: 419 SSIPLQTFE 427
++ L T
Sbjct: 337 VTLKLSTHH 345
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 6e-14
Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 58/251 (23%)
Query: 36 YHNKLTSL---------SLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86
+N L + SLQ L L + V ++ +PSL ++S + +
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVDLSLIPSLFHANVSYNLLSTL------ 207
Query: 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146
+ ++ L S ++ ++ L L L +N L N L
Sbjct: 208 ---AIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA---WLLNYPGLV 257
Query: 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTL 205
+ S N + I + F + L L +S N++ + + LK L
Sbjct: 258 EVDLSYNELEKI-----------MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
Query: 206 KIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSS 265
+ N L + F L++ L +N + +L T +
Sbjct: 307 DLSHNHLL-HVERNQPQFD------RLENLYLDHNSIV-TLKL-----STHH-------T 346
Query: 266 LVELDLESNQL 276
L L L N
Sbjct: 347 LKNLTLSHNDW 357
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 7e-13
Identities = 61/349 (17%), Positives = 110/349 (31%), Gaps = 88/349 (25%)
Query: 114 SHISKSLVYLDLS-NNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171
S++ V+ D+ + Q Q + + + +T + + + P
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-----------PAA 69
Query: 172 AFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
+ + L+L+ QI I +F ++ L + N + P +F N
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------ 123
Query: 231 SLQSFMLQNNMLS-------GSLPGVTELD------GTFPKQ-FCRPSSLVELDLESNQL 276
L +L+ N LS + P +T L F +SL L L SN+L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 277 ---------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327
L +++ + L ++ LD SHN+I+ + L+ +
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL--KLQH 241
Query: 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP--KSIDLSDNNLSGKIPEEI 385
N L D P +DLS N L KI
Sbjct: 242 N-------NLTDTAWLL--------------------NYPGLVEVDLSYNELE-KIMYHP 273
Query: 386 ----TSL--------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
L + + + L V++LS+N+ + + P
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 5e-19
Identities = 62/299 (20%), Positives = 101/299 (33%), Gaps = 69/299 (23%)
Query: 37 HNKLTSL------SLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINYRS-HSL 87
L + + + L+L E L L L LS + I + + L
Sbjct: 52 RKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 88 VNSSSSSLTHLHLS---LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144
++L L L L + N A+ LS L L L NN ++ P YAF + S
Sbjct: 112 -----ANLNTLELFDNRLTTIPNGAFVYLS----KLKELWLRNNPIESI-PSYAFNRIPS 161
Query: 145 LASL--TSLNYITGISKCSL--------------PITLVRPKYAFSNVTSLMDLDLSKNQ 188
L L L ++ IS+ + + + + + L +LDLS N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---NLTPLIKLDELDLSGNH 218
Query: 189 ITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
++ I SF + L+ L + + + F N SL L +N L+ LP
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ------SLVEINLAHNNLT-LLP 271
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQL-----------WLRFNHINGSATPKLCSSP 295
F L + L N W++ + +A C++P
Sbjct: 272 ---------HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 80/306 (26%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
IS + L+L NQ+Q + +F+++ L L S N+I I A
Sbjct: 60 DGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTI-----------EIGA 107
Query: 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F+ + +L L+L N++T IP +F + LK L + +N + + F S
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP------S 161
Query: 232 LQSFMLQ-NNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPK 290
L+ L LS + +G F S+L L+L L P
Sbjct: 162 LRRLDLGELKRLS-YIS-----EGAFEGL----SNLRYLNLAMCNL---------REIPN 202
Query: 291 LCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRA 349
L L LD S N++S + P L + + + +IQ+I+ FD
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-----QIQVIERNAFD----- 252
Query: 350 LLVWKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVN 407
L I+L+ NNL+ +P ++ F+ L HL ++
Sbjct: 253 ---------------NLQSLVEINLAHNNLT-LLPHDL-----------FTPLHHLERIH 285
Query: 408 LSNNNF 413
L +N +
Sbjct: 286 LHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 58/270 (21%), Positives = 101/270 (37%), Gaps = 48/270 (17%)
Query: 57 LQVVITGLP-SLRELDLSSSAPPKINYRS-HSLVNSSSSSLTHLHLSLCGLSNSAYHCLS 114
L+ V G+ + R L+L + I S L L L LS + +
Sbjct: 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFKHL-----RHLEILQLSRNHIRTIEIGAFN 109
Query: 115 HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAF 173
++ +L L+L +N+L AF ++ L L N I I P YAF
Sbjct: 110 GLA-NLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPIESI-----------PSYAF 156
Query: 174 SNVTSLMDLDLSK-NQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
+ + SL LDL + +++ I + +F + L+ L + L ++P
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI------K 208
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
L L N LS ++ G+F L +L + +Q+ I +A L
Sbjct: 209 LDELDLSGNHLS-AIR-----PGSFQGL----MHLQKLWMIQSQI----QVIERNAFDNL 254
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321
L ++ +HNN++ + L +
Sbjct: 255 ---QSLVEINLAHNNLTLLPHDLFTPLHHL 281
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 41/193 (21%)
Query: 36 YHNKLTSL---------SLQGLDLRE------ATDWLQVVITGLPSLRELDLSSSAPPKI 80
+ N+LT++ L+ L LR + +PSLR LDL ++
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN----RIPSLRRLDLGEL--KRL 173
Query: 81 NY-RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAF 139
+Y + S+ L +L+L++C L L+ + L LDLS N L +F
Sbjct: 174 SYISEGAFEGLSN--LRYLNLAMCNLRE--IPNLTPLI-KLDELDLSGNHLSA-IRPGSF 227
Query: 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FG 197
+ + L L + I I + AF N+ SL++++L+ N +T +P F
Sbjct: 228 QGLMHLQKLWMIQSQIQVI-----------ERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 198 DMCCLKTLKIHDN 210
+ L+ + +H N
Sbjct: 277 PLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 50/261 (19%), Positives = 84/261 (32%), Gaps = 95/261 (36%)
Query: 169 PKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGC 227
P +N L +L +NQI I SF + L+ L++ N + F +
Sbjct: 59 PDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--- 112
Query: 228 AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSA 287
+L + L +N L+ ++P F S L EL L +N + I A
Sbjct: 113 ---NLNTLELFDNRLT-TIP---------NGAFVYLSKLKELWLRNNPI----ESIPSYA 155
Query: 288 TPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQD 347
++ P L+ LD R+ I + F+
Sbjct: 156 FNRI---PSLRRLDLGELK---------------------------RLSYISEGAFE--- 182
Query: 348 RALLVWKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGV 405
GL ++L+ NL +IP + + L L
Sbjct: 183 -----------------GLSNLRYLNLAMCNLR-------------EIP-NLTPLIKLDE 211
Query: 406 VNLSNNNFSGKIPSSIPLQTF 426
++LS N+ S+I +F
Sbjct: 212 LDLSGNHL-----SAIRPGSF 227
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 68/311 (21%), Positives = 117/311 (37%), Gaps = 77/311 (24%)
Query: 36 YHNKLTSL-------SLQGLDLREATDWLQVV--ITGLPSLRELDLSSSAPPKINYRSHS 86
N++T + L L + + + + + L +LREL L+ + S
Sbjct: 74 NGNQITDISPLSNLVKLTNLYIGT--NKITDISALQNLTNLRELYLNE------DNISDI 125
Query: 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTS 144
++ + + L+L + LS +S L YL ++ ++++ TP N+T
Sbjct: 126 SPLANLTKMYSLNLGANHNLSD----LSPLSNMTGLNYLTVTESKVKDVTP---IANLTD 178
Query: 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLK 203
L SL+ + N I IS +++TSL NQIT I +M L
Sbjct: 179 LYSLSLNYNQIEDIS-------------PLASLTSLHYFTAYVNQITDIT-PVANMTRLN 224
Query: 204 TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRP 263
+LKI +N +T L L A L + N +S + V +L
Sbjct: 225 SLKIGNNKIT-DLSPL-----ANL--SQLTWLEIGTNQIS-DINAVKDL----------- 264
Query: 264 SSLVELDLESNQ---------------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308
+ L L++ SNQ L+L N + + L L S N+I+
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 309 GMVP-TCLNNL 318
+ P L+ +
Sbjct: 325 DIRPLASLSKM 335
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 9e-19
Identities = 65/401 (16%), Positives = 126/401 (31%), Gaps = 114/401 (28%)
Query: 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLH 99
+L+ + + L L ++ + + S+T L
Sbjct: 2 AATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVTQEEL------ESITKLV 50
Query: 100 LSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG 156
++ +++ + I +L YL+L+ NQ+ +P N+ L +L N IT
Sbjct: 51 VAGEKVAS-----IQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD 102
Query: 157 ISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKL 216
IS A N+T+L +L L+++ I+ I ++ + +L + N + L
Sbjct: 103 IS-------------ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL 148
Query: 217 PELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ- 275
L L + + + + + L + L L L NQ
Sbjct: 149 SPLSNM-------TGLNYLTVTESKVK-DVTPIANL-----------TDLYSLSLNYNQI 189
Query: 276 --------------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321
N I + + L L +N I+ + P L NLS +
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQL 245
Query: 322 VQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380
+N +I I+ + + K+ +++ N +S
Sbjct: 246 TWLEIGTN-----QISDIN---------------AVKDLTKLK-----MLNVGSNQISD- 279
Query: 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+ LS L + L+NN + I
Sbjct: 280 -------------ISVLNNLSQLNSLFLNNNQLGNEDMEVI 307
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 6e-18
Identities = 65/420 (15%), Positives = 137/420 (32%), Gaps = 109/420 (25%)
Query: 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS 74
++ I D L+ + LQ + + L S+ +L ++
Sbjct: 2 AATLATLPAPINQIFPDADLA---EGIRAVLQKASVTDVVT-----QEELESITKLVVAG 53
Query: 75 SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQG 132
I + ++L +L+L+ +++ +S +S L L + N++
Sbjct: 54 EKVASIQGIEYL------TNLEYLNLNGNQITD-----ISPLSNLVKLTNLYIGTNKITD 102
Query: 133 PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG 191
+ +N+T+L L + + I+ IS +N+T + L+L N
Sbjct: 103 ISA---LQNLTNLRELYLNEDNISDIS-------------PLANLTKMYSLNLGANHNLS 146
Query: 192 IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251
+M L L + ++ + + + A L S L N + + +
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVK-DVTPI-----ANL--TDLYSLSLNYNQIE-DISPLAS 197
Query: 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
L +SL NQ+ + + + L L +N I+ +
Sbjct: 198 L-----------TSLHYFTAYVNQI---------TDITPVANMTRLNSLKIGNNKITDLS 237
Query: 312 PTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSI 370
P L NLS + +N +I I+ + + K+ +
Sbjct: 238 P--LANLSQLTWLEIGTN-----QISDIN---------------AVKDLTKLK-----ML 270
Query: 371 DLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
++ N +S + +L L + L++L + LS N+ + P
Sbjct: 271 NVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 71/417 (17%), Positives = 133/417 (31%), Gaps = 127/417 (30%)
Query: 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELD 71
LE + + + + + + Y L L+L G + + + ++ L L L
Sbjct: 43 LESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLY 94
Query: 72 LSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQ 129
+ + N + + ++L L+L+ +S+ +S ++ + L+L N
Sbjct: 95 IGT------NKITDISALQNLTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGANH 143
Query: 130 LQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ 188
NMT L LT + + + ++ +N+T L L L+ NQ
Sbjct: 144 NLSDLS--PLSNMTGLNYLTVTESKVKDVT-------------PIANLTDLYSLSLNYNQ 188
Query: 189 ITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248
I I + L + N +T + + L S + NN ++ L
Sbjct: 189 IEDIS-PLASLTSLHYFTAYVNQIT--------DITPVANMTRLNSLKIGNNKIT-DLSP 238
Query: 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308
+ L S L L++ +NQ+ S + L++L+ N IS
Sbjct: 239 LANL-----------SQLTWLEIGTNQI---------SDINAVKDLTKLKMLNVGSNQIS 278
Query: 309 GMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPK 368
+ LNNLS +
Sbjct: 279 DISV--LNNLSQL----------------------------------------------N 290
Query: 369 SIDLSDNNLSGKIPEEITSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFS 414
S+ L++N L + E I L I I + LS + + +N
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 42/186 (22%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
SL L +N I ++ +L SL + + + + + L L L
Sbjct: 197 SLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWL 248
Query: 71 DLSS---SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDL 125
++ + S + + L L++ +S+ +S ++ L L L
Sbjct: 249 EIGTNQISDINAV---------KDLTKLKMLNVGSNQISD-----ISVLNNLSQLNSLFL 294
Query: 126 SNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDL 184
+NNQL + +T+L +L S N+IT I ++++ + D
Sbjct: 295 NNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIR-------------PLASLSKMDSADF 340
Query: 185 SKNQIT 190
+ I
Sbjct: 341 ANQVIK 346
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 51/256 (19%)
Query: 36 YHNKLTSL------SLQGLDLRE------ATDWLQVVITGLPSLRELDLSSSAPPKINYR 83
N+L L +LQ L + E GL + ++L + N
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN----GLNQMIVVELGT------NPL 157
Query: 84 SHSLVNSSS----SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAF 139
S + + + L+++ ++ ++ SL L L N++ +
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITK-VDAASL 212
Query: 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGD 198
+ + +LA L S N I+ + + +N L +L L+ N++ +P D
Sbjct: 213 KGLNNLAKLGLSFNSISAV-----------DNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 199 MCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258
++ + +H+N ++A F K S L +N + E+ P
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-----YWEIQ---PS 313
Query: 259 QFCRPSSLVELDLESN 274
F + L +
Sbjct: 314 TFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 60/354 (16%), Positives = 110/354 (31%), Gaps = 83/354 (23%)
Query: 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLD 124
P LDL ++ +I N + L L L +S + + + L L
Sbjct: 52 PDTALLDLQNNKITEIK--DGDFKNLKN--LHTLILINNKISKISPGAFAPL-VKLERLY 106
Query: 125 LSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDL 184
LS NQL+ P+ + + L + N IT + K F+ + ++ ++L
Sbjct: 107 LSKNQLKE-LPEKMPKTLQEL-RV-HENEITKV-----------RKSVFNGLNQMIVVEL 152
Query: 185 SKNQITGI---PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
N + +F M L ++I D +T L SL L N
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---------PSLTELHLDGNK 203
Query: 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301
++ + + ++L +L L N + + ++ + P L+ L
Sbjct: 204 IT-KVD-----AASLKGL----NNLAKLGLSFNSI----SAVDNGSLANT---PHLRELH 246
Query: 302 FSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIY 360
++N + VP L + + +N I I +F
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNN-----NISAIGSNDF--------------CPP 286
Query: 361 KITLGLPK--SIDLSDNNLS-GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411
+ L N + +I P +F + V L N
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQ-----------PSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 59/339 (17%), Positives = 107/339 (31%), Gaps = 110/339 (32%)
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150
L L ++ ++ +L L L NN++ +P AF + L L S
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPG-AFAPLVKLERLYLS 108
Query: 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHD 209
N + + P+ L +L + +N+IT + K F + + +++
Sbjct: 109 KNQLKEL-----------PEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 210 NILTAKL--PELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLV 267
N L + F K L + + ++ ++P G P SL
Sbjct: 155 NPLKSSGIENGAFQGM------KKLSYIRIADTNIT-TIP-----QGLPP-------SLT 195
Query: 268 ELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327
EL L+ N++ ++ ++ L L L S N+IS + L N +
Sbjct: 196 ELHLDGNKI----TKVDAASLKGL---NNLAKLGLSFNSISAVDNGSLANTPHL------ 242
Query: 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387
+ + L++N L
Sbjct: 243 ----------------------------------------RELHLNNNKLV--------- 253
Query: 388 LLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF 426
K+P + ++ VV L NNN S+I F
Sbjct: 254 ----KVPGGLADHKYIQVVYLHNNNI-----SAIGSNDF 283
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 7e-19
Identities = 67/299 (22%), Positives = 102/299 (34%), Gaps = 69/299 (23%)
Query: 37 HNKLTSL------SLQGLDLRE--ATDWLQVVITGLPSLRELDLSSSAPPKINYRS-HSL 87
L+ + + + L+L E L L L L ++ +I + + L
Sbjct: 63 RRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Query: 88 VNSSSSSLTHLHLS---LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144
+SL L L L + + A+ LS L L L NN ++ P YAF + S
Sbjct: 123 -----ASLNTLELFDNWLTVIPSGAFEYLS----KLRELWLRNNPIES-IPSYAFNRVPS 172
Query: 145 LASL--TSLNYITGISKCSL--------------PITLVRPKYAFSNVTSLMDLDLSKNQ 188
L L L + IS+ + I + + + L +L++S N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNH 229
Query: 189 ITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
I SF + LK L + ++ ++ F + SL L +N LS SLP
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA------SLVELNLAHNNLS-SLP 282
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQL-----------WLRFNHINGSATPKLCSSP 295
F LVEL L N WLR S C +P
Sbjct: 283 ---------HDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 63/305 (20%), Positives = 109/305 (35%), Gaps = 78/305 (25%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
I + YL+L N +Q D FR++ L L N I I A
Sbjct: 71 QGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQI-----------EVGA 118
Query: 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F+ + SL L+L N +T IP +F + L+ L + +N + + F S
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP------S 172
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
L L + +G F +L L+L + P L
Sbjct: 173 LMRLDLGELKKLEYIS-----EGAFEGL----FNLKYLNLGMCNI---------KDMPNL 214
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRAL 350
L+ L+ S N+ + P + LS++ + ++ ++ LI+ FD
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-----QVSLIERNAFD------ 263
Query: 351 LVWKPIDSIYKITLGLPK--SIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNL 408
GL ++L+ NNLS +P ++ F+ L +L ++L
Sbjct: 264 --------------GLASLVELNLAHNNLS-SLPHDL-----------FTPLRYLVELHL 297
Query: 409 SNNNF 413
+N +
Sbjct: 298 HHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 6e-17
Identities = 62/288 (21%), Positives = 104/288 (36%), Gaps = 53/288 (18%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLT 96
N+ + + L E V G+P + R L+L + I + L
Sbjct: 54 NQFSKVVCTRRGLSE-------VPQGIPSNTRYLNLMENNIQMI----QADTFRHLHHLE 102
Query: 97 HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYIT 155
L L + + ++ SL L+L +N L AF ++ L L N I
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSG-AFEYLSKLRELWLRNNPIE 160
Query: 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSK-NQITGIPK-SFGDMCCLKTLKIHDNILT 213
I P YAF+ V SLM LDL + ++ I + +F + LK L + +
Sbjct: 161 SI-----------PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLES 273
+P L+ + N + G+F SSL +L + +
Sbjct: 210 D-MPN-LTPLV------GLEELEMSGNHFP-EIR-----PGSFHGL----SSLKKLWVMN 251
Query: 274 NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321
+Q+ + I +A L L L+ +HNN+S + L +
Sbjct: 252 SQV----SLIERNAFDGL---ASLVELNLAHNNLSSLPHDLFTPLRYL 292
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 36 YHNKLTSL---------SLQGLDLRE------ATDWLQVVITGLPSLRELDLSSSAPPKI 80
+ N LT + L+ L LR + +PSL LDL K+
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN----RVPSLMRLDLGEL--KKL 184
Query: 81 NYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR 140
Y S +L +L+L +C + + L+ + L L++S N P +F
Sbjct: 185 EYISEGAF-EGLFNLKYLNLGMCNIKDMPN--LTPLV-GLEELEMSGNHFPEIRPG-SFH 239
Query: 141 NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGD 198
++SL L + ++ I + AF + SL++L+L+ N ++ +P F
Sbjct: 240 GLSSLKKLWVMNSQVSLI-----------ERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Query: 199 MCCLKTLKIHDN 210
+ L L +H N
Sbjct: 289 LRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 51/168 (30%)
Query: 263 PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322
PS+ L+L N + I L L+VL N+I + N L+++
Sbjct: 74 PSNTRYLNLMENNI----QMIQADTFRHL---HHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 323 Q-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPK--SIDLSDNNLSG 379
N + +I F+ L K + L +N +
Sbjct: 127 TLELFDN-----WLTVIPSGAFE--------------------YLSKLRELWLRNNPIE- 160
Query: 380 KIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
IP +F+++ L ++L K+ I FE
Sbjct: 161 SIP-----------SYAFNRVPSLMRLDLGELK---KL-EYISEGAFE 193
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 41/257 (15%), Positives = 79/257 (30%), Gaps = 52/257 (20%)
Query: 36 YHNKLTSL------SLQGLDLRE------ATDWLQVVITGLPSLRELDLSSSAPPKINYR 83
N L + SL L + + GL ++ +++ N
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS----GLRNMNCIEMGG------NPL 159
Query: 84 SHSLVNS---SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR 140
+S L +L +S L+ +L L L +N++Q
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE----TLNELHLDHNKIQA-IELEDLL 214
Query: 141 NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM 199
+ L L N I I + S + +L +L L N+++ +P D+
Sbjct: 215 RYSKLYRLGLGHNQIRMI-----------ENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263
Query: 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS-GSLPGVTELDGTFPK 258
L+ + +H N +T F G + L NN + + P
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ---------PA 314
Query: 259 QFCRPSSLVELDLESNQ 275
F + + + + +
Sbjct: 315 TFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 75/382 (19%), Positives = 113/382 (29%), Gaps = 125/382 (32%)
Query: 62 TGLPSLRELDLSSSAP-PKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120
+G+P L L + SA P + +V S L + IS
Sbjct: 11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVP--------------KEISPDT 56
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
LDL NN + D F+ + L +L N I+ I + AFS + L
Sbjct: 57 TLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKI-----------HEKAFSPLRKL 104
Query: 180 MDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
L +SKN + IP + L L+IHDN + +F ++ +
Sbjct: 105 QKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLR------NMNCIEMG 155
Query: 239 NNMLSGSLPGVTELDG--------------TFPKQFCRPSSLVELDLESNQLWLRFNHIN 284
N L S DG PK P +L EL L+ N++ I
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI----QAIE 209
Query: 285 GSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFD 344
+ L L HN I + L+ L +
Sbjct: 210 LEDLLRY---SKLYRLGLGHNQIRMIENGSLSFLPTL----------------------- 243
Query: 345 YQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLG 404
+ + L +N LS ++P L L
Sbjct: 244 -----------------------RELHLDNNKLS-------------RVPAGLPDLKLLQ 267
Query: 405 VVNLSNNNFSGKIPSSIPLQTF 426
VV L NN + + + F
Sbjct: 268 VVYLHTNNI-----TKVGVNDF 284
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 5e-18
Identities = 55/409 (13%), Positives = 116/409 (28%), Gaps = 76/409 (18%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
S +++ +++ N + + L L+L L E D + L +LR L
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD-----LESLSTLRTL 85
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
DL+++ ++ S+ LH + +N+ + + L+NN++
Sbjct: 86 DLNNNYVQEL---------LVGPSIETLHAA----NNNISRVSCSRGQGKKNIYLANNKI 132
Query: 131 QGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQI 189
D + + L LN I ++ L ++ +L L+L N I
Sbjct: 133 TM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------AASSDTLEHLNLQYNFI 181
Query: 190 TGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249
+ LKTL + N L + F + + + L+NN L
Sbjct: 182 YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA------GVTWISLRNNKLV------ 227
Query: 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309
K +L DL N T + S +V + +
Sbjct: 228 -----LIEKALRFSQNLEHFDLRGNGF--------HCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 310 MVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP- 367
+ + + + + D + L+ ++
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334
Query: 368 ----KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412
+ ID + +++ + +
Sbjct: 335 QARQREIDALKEQYR-TVIDQV-----------TLRKQAKITLEQKKKA 371
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 47/340 (13%), Positives = 95/340 (27%), Gaps = 107/340 (31%)
Query: 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147
+ + + ++ L + ++ LDLS N L + T L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAA-DLAPFTKLEL 62
Query: 148 LT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLK 206
L S N + ++++L LDL+ N + + ++TL
Sbjct: 63 LNLSSNVLYETL-------------DLESLSTLRTLDLNNNYVQELLVGPS----IETLH 105
Query: 207 IHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL 266
+N ++ + ++ L NN ++ S +
Sbjct: 106 AANNNISRVSCSRG---------QGKKNIYLANNKITMLRDLD----------EGCRSRV 146
Query: 267 VELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLSAMVQNG 325
LDL+ N++ + +N + + L+ L+ +N I + L
Sbjct: 147 QYLDLKLNEI----DTVNFAELAASSDT--LEHLNLQYNFIYDVKGQVVFAKL------- 193
Query: 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI 385
K++DLS N L+ + E
Sbjct: 194 ------------------------------------------KTLDLSSNKLA-FMGPEF 210
Query: 386 TSL-----------LIGKIPRSFSQLSHLGVVNLSNNNFS 414
S + I ++ +L +L N F
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 6e-16
Identities = 51/412 (12%), Positives = 111/412 (26%), Gaps = 86/412 (20%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKINYRSHSLVN---- 89
N+ + L++A L +++ELDLS S L
Sbjct: 10 NRYKIEKVTDSSLKQALASL---RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 90 ----------SSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDY 137
S S+L L L+ +N + + S+ L +NN +
Sbjct: 67 SNVLYETLDLESLSTLRTLDLN----NNY----VQELLVGPSIETLHAANNNISR-VSCS 117
Query: 138 AFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-- 195
+ ++ L + N IT + + + LDL N+I + +
Sbjct: 118 RGQGKKNI-YL-ANNKITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 196 FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGT 255
L+ L + N + ++ L++ L +N L+
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVF--------AKLKTLDLSSNKLA-----------F 205
Query: 256 FPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315
+F + + + L +N+L I + L S L+ D N C
Sbjct: 206 MGPEFQSAAGVTWISLRNNKL----VLIEKA----LRFSQNLEHFDLRGNGFH-----CG 252
Query: 316 NNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN 375
+N + + ++ + + L + +
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312
Query: 376 NLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
+ ++ + ++ + ++ Q
Sbjct: 313 KEHALL--SGQGSETERLECERENQARQREIDALKEQY-----RTVIDQVTL 357
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 59/329 (17%)
Query: 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLS------YHNKLTSLSLQGLDLREATDW 56
I A F +++ +++ N ++ + L+ +L+S++LQ ++
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 57 LQVVITGLPSLRELDLSS----SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHC 112
S+ LDLS + K + + + S L++ + ++ +
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 113 LSHIS------KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165
+ + + DLS +++ F + T L LT + N I I
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKI-------- 314
Query: 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFS 224
AF +T L+ L+LS+N + I F ++ L+ L + N + A + FL
Sbjct: 315 ---DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL-------- 276
+L+ L N L S+P F R +SL ++ L +N
Sbjct: 372 ------NLKELALDTNQLK-SVPDGI---------FDRLTSLQKIWLHTNPWDCSCPRID 415
Query: 277 ----WLRFNHINGSATPKLCSSPMLQVLD 301
WL N + K CS V
Sbjct: 416 YLSRWLNKNSQKEQGSAK-CSGSGKPVRS 443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 82/426 (19%), Positives = 136/426 (31%), Gaps = 105/426 (24%)
Query: 36 YHNKLTSLS---------LQGLDLREATDWLQV---VITGLPSLRELDLSSSAPPKINYR 83
N + L+ LQ L + + T L + GL SL L L + ++
Sbjct: 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 84 S-HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS----KSLVYLDLSNNQLQGPTPDYA 138
+ + L N L L L+ C L + LS SL L L +N ++ P
Sbjct: 98 AFNGLAN-----LEVLTLTQCNLDGA---VLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 139 FRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTS--LMDLDLSKNQITGIPK- 194
F NM L + N + I + N L LS + + +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSI-----------CEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 195 --------SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSL 246
+ + TL + N + + F + A +QS +L N+ GS
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD---AIAGTKIQSLILSNSYNMGSS 255
Query: 247 PGVTELDGTFPKQF--CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304
G T F S + DL +++ + S L+ L +
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI----FALLKSVFSHF---TDLEQLTLAQ 308
Query: 305 NNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKIT 363
N I+ + L+ +++ N S N + ID F+
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQN-----FLGSIDSRMFE------------------- 344
Query: 364 LGLPK--SIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L K +DLS N++ + +SF L +L + L N S+
Sbjct: 345 -NLDKLEVLDLSYNHIRA-LG-----------DQSFLGLPNLKELALDTNQL-----KSV 386
Query: 422 PLQTFE 427
P F+
Sbjct: 387 PDGIFD 392
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 7e-13
Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 77/340 (22%)
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSN 175
+ + Y+DLS N + +F + L L + + + + + F
Sbjct: 28 LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLK-------VEQQTPGLVI--RNNTFRG 77
Query: 176 VTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKL--PELFLNFSAGCAKKSL 232
++SL+ L L NQ + F + L+ L + L + F SL
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL------TSL 131
Query: 233 QSFMLQNNMLS--------GSLPGVTELD-----------GTFPKQFCRPSSLVELDLES 273
+ +L++N + ++ LD + L L S
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSS 189
Query: 274 NQL-WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP------TCLNNLSAMVQNGS 326
L + + + + LD S N + + +++ + S
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 327 SNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEIT 386
N+ + DP + + K+ DLS + + + + +
Sbjct: 250 YNMGSSFGHTNFKDP-------------DNFTFKGLEASGVKTCDLSKSKIF-ALLKSV- 294
Query: 387 SLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF 426
FS + L + L+ N + I F
Sbjct: 295 ----------FSHFTDLEQLTLAQNEI-----NKIDDNAF 319
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 76/429 (17%), Positives = 157/429 (36%), Gaps = 105/429 (24%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI 61
+++ L+ + ++ I+ + Y N LT ++ L + T +
Sbjct: 35 NVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDITP-----L 86
Query: 62 TGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KS 119
L L ++ +++ N + ++ ++LT L L +++ + + +
Sbjct: 87 KNLTKLVDILMNN------NQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTN 135
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L+LS+N + + +TSL L+ N +T + +N+T+L
Sbjct: 136 LNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK-------------PLANLTTL 179
Query: 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
LD+S N+++ I + L++L +N ++ + L + +L L
Sbjct: 180 ERLDISSNKVSDIS-VLAKLTNLESLIATNNQIS-DITPLGIL-------TNLDELSLNG 230
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
N L + + L ++L +LDL +NQ+ S L L
Sbjct: 231 NQLK-DIGTLASL-----------TNLTDLDLANNQI---------SNLAPLSGLTKLTE 269
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDS 358
L N IS + P L L+A+ + N + + PI +
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLED--------------------ISPISN 307
Query: 359 IYKITLGLPKSIDLSDNNLSGKIP-EEITSL--------LIGKIPRSFSQLSHLGVVNLS 409
+ +T + L NN+S P +T L + + S + L+++ ++
Sbjct: 308 LKNLT-----YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG 361
Query: 410 NNNFSGKIP 418
+N S P
Sbjct: 362 HNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 79/431 (18%), Positives = 148/431 (34%), Gaps = 96/431 (22%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
+L +L + + N I L L L L + + + ++GL SL++L
Sbjct: 110 NLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISA-----LSGLTSLQQL 161
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNN 128
N + ++ ++L L +S +S+ +S ++ +L L +NN
Sbjct: 162 SFG-------NQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNN 209
Query: 129 QLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN 187
Q+ TP +T+L L+ + N + I +++T+L DLDL+ N
Sbjct: 210 QISDITP---LGILTNLDELSLNGNQLKDIG-------------TLASLTNLTDLDLANN 253
Query: 188 QITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
QI+ + + L LK+ N ++ + L +L + L N L P
Sbjct: 254 QISNLA-PLSGLTKLTELKLGANQIS-NISPL-------AGLTALTNLELNENQLEDISP 304
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQ---------------LWLRFNHINGSATPKLC 292
+L L L N L+ N ++ L
Sbjct: 305 ------------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLA 350
Query: 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALL 351
+ + L HN IS + P L NL+ + Q + + P + ++
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-------AWTNAPVNYKANVSIP 401
Query: 352 VWKPIDSIYKITLGLPKSIDLSDN-NLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSN 410
+++ +T L +SD + + +IT L S +
Sbjct: 402 -----NTVKNVTGALIAPATISDGGSYTE---PDITWNLPSYTNEVSYTFSQPVTIGKGT 453
Query: 411 NNFSGKIPSSI 421
FSG + +
Sbjct: 454 TTFSGTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 51/276 (18%), Positives = 95/276 (34%), Gaps = 63/276 (22%)
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
+ + M L K +T S D+ + TL+ + + + +
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKS--IDGVEYL------NN 69
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ---------------L 276
L NN L+ + + L + LV++ + +NQ L
Sbjct: 70 LTQINFSNNQLT-DITPLKNL-----------TKLVDILMNNNQIADITPLANLTNLTGL 117
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336
L N I L + L L+ S N IS + L+ L+++ Q N Q
Sbjct: 118 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGN-------Q 166
Query: 337 LIDDPEFDYQD--RALLVWK-PIDSIYKITLGLP--KSIDLSDNNLSGKIP-EEITSL-- 388
+ D L + + I + L +S+ ++N +S P +T+L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 389 ------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
+ I + + L++L ++L+NN S P
Sbjct: 226 LSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP 260
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 7e-17
Identities = 62/232 (26%), Positives = 88/232 (37%), Gaps = 34/232 (14%)
Query: 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS 73
Q I + N I LT L L L TGL L +LDLS
Sbjct: 33 ASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLS 88
Query: 74 SSAPPKINYRSHSLVN---SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
N + S+ L LHL CGL ++ +L YL L +N L
Sbjct: 89 D------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNAL 141
Query: 131 QGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQI 189
Q PD FR++ +L L N I+ + P+ AF + SL L L +N++
Sbjct: 142 QA-LPDDTFRDLGNLTHLFLHGNRISSV-----------PERAFRGLHSLDRLLLHQNRV 189
Query: 190 TGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
+ +F D+ L TL + N L+A E ++LQ L +N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL------RALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 38/210 (18%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
I + + L N++ P +FR +L L N + I A
Sbjct: 28 VGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARI-----------DAAA 75
Query: 173 FSNVTSLMDLDLSKN-QITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
F+ + L LDLS N Q+ + + F + L TL + L P LF +
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ 129
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPK 290
+LQ LQ+N L +LP D TF +L L L N++ + A
Sbjct: 130 ALQYLYLQDNALQ-ALP-----DDTFRD----LGNLTHLFLHGNRIS----SVPERAFRG 175
Query: 291 LCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
L S L L N ++ + P +L
Sbjct: 176 LHS---LDRLLLHQNRVAHVHPHAFRDLGR 202
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 45/255 (17%), Positives = 74/255 (29%), Gaps = 68/255 (26%)
Query: 177 TSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
+ + L N+I+ +P SF L L +H N+L F + L+
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLEQL 85
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP 295
L +N S+ TF L L L+ L + L +
Sbjct: 86 DLSDNAQLRSVD-----PATFHGL----GRLHTLHLDRCGL----QELGPGLFRGLAA-- 130
Query: 296 MLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSSNVIVEYRIQLIDDPEFDYQDRALLVWK 354
LQ L N + + +L + N RI + + F
Sbjct: 131 -LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-----RISSVPERAFR---------- 174
Query: 355 PIDSIYKITLGLP--KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412
GL + L N ++ + P +F L L + L NN
Sbjct: 175 ----------GLHSLDRLLLHQNRVA-HVH-----------PHAFRDLGRLMTLYLFANN 212
Query: 413 FSGKIPSSIPLQTFE 427
S++P +
Sbjct: 213 L-----SALPTEALA 222
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 8e-17
Identities = 45/321 (14%), Positives = 91/321 (28%), Gaps = 104/321 (32%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNV 176
++++ L+ ++ ++ L S N ++ I +
Sbjct: 10 NRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQI-----------SAADLAPF 57
Query: 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
T L L+LS N + + L+TL +++N + L S+++
Sbjct: 58 TKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-LLVG----------PSIETLH 105
Query: 237 LQNNMLS----GSLPGVTELD-------GTFPKQFCRPSSLVELDLESNQLWLRFNHING 285
NN +S G + S + LDL+ N++ + +N
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI----DTVNF 161
Query: 286 SATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFD 344
+ + L+ L+ +N I + L
Sbjct: 162 AELAASSDT--LEHLNLQYNFIYDVKGQVVFAKL-------------------------- 193
Query: 345 YQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL-----------LIGKI 393
K++DLS N L+ + E S + I
Sbjct: 194 -----------------------KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229
Query: 394 PRSFSQLSHLGVVNLSNNNFS 414
++ +L +L N F
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 62/287 (21%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTH 97
N+ + L++A L +++ELDLS + ++ S + + + + L
Sbjct: 10 NRYKIEKVTDSSLKQALASL---RQSAWNVKELDLSGN---PLSQISAADL-APFTKLEL 62
Query: 98 LHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYI 154
L+LS L + +L LDL+NN +Q S+ +L + N I
Sbjct: 63 LNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111
Query: 155 TGISKCSLP-----------ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS--FGDMCC 201
+ +S IT++ + + LDL N+I + +
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 202 LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC 261
L+ L + N + ++ L++ L +N L+ +F
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF--------AKLKTLDLSSNKLA-----------FMGPEFQ 211
Query: 262 RPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308
+ + + L +N+L I + L S L+ D N
Sbjct: 212 SAAGVTWISLRNNKL----VLIEKA----LRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 36/245 (14%), Positives = 74/245 (30%), Gaps = 45/245 (18%)
Query: 37 HNKLTSL-------SLQGLDLR--EATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87
N L +L+ LDL + + PS+ L +++ +
Sbjct: 67 SNVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN-------NISRV 114
Query: 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147
S +++L+ ++ S+ + YLDL N++ + +L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 148 LT-SLNYITGISKCSLPITLVR-----------PKYAFSNVTSLMDLDLSKNQITGIPKS 195
L N+I + + L F + + + L N++ I K+
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA 232
Query: 196 FGDMCCLKTLKIHDN-ILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDG 254
L+ + N L + F + + + + L G E +
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSK--------NQRVQTVAKQTVK-KLTGQNEEEC 283
Query: 255 TFPKQ 259
T P
Sbjct: 284 TVPTL 288
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 9e-17
Identities = 51/311 (16%), Positives = 107/311 (34%), Gaps = 56/311 (18%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
S +++++ LDLSNN++ + + +L +L + N I I + +
Sbjct: 48 SGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTI-----------EEDS 95
Query: 173 FSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
FS++ SL LDLS N ++ + S F + L L + N +
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-----HLTK 150
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
LQ + N + K F + L EL+++++ L + L
Sbjct: 151 LQILRVGNMDTFTKIQ---------RKDFAGLTFLEELEIDASDL----QSYEPKS---L 194
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSA-MVQNGSSNVIVEYRIQLIDDPEFDYQDRAL 350
S + L ++ ++ S+ + + + E + +
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 351 ------LVWKPIDSIYKITLGLP--KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402
+ + + + K+ + ++ S N L +P+ I F +L+
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGI-----------FDRLTS 302
Query: 403 LGVVNLSNNNF 413
L + L N +
Sbjct: 303 LQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 47/230 (20%)
Query: 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS------------SAPPKINYR 83
+N L++LS L SL L+L S K+
Sbjct: 108 SYNYLSNLSSS-------------WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 84 SHSLVNSSSS----------SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
+++ + L L + L + L I + +L L Q
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILL 213
Query: 134 TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192
+ +S+ L + L + + ++ ++ + +
Sbjct: 214 -LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN---SLIKKFTFRNVKITDESLFQV 269
Query: 193 PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242
K + L L+ N L + +F SLQ L N
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRL------TSLQKIWLHTNPW 313
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 28/245 (11%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYH-NKLTSLSLQGLDLREATDWLQVV 60
+ F L L +++ N + + + L L L + +
Sbjct: 42 SLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT----MSSN 96
Query: 61 ITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120
GL L LD S + S V S +L +L +S + + +S SL
Sbjct: 97 FLGLEQLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SL 152
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L ++ N Q F + +L L S + + AF++++SL
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSL 201
Query: 180 MDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
L++S N + + + L+ L N + + +F SL L
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLT 256
Query: 239 NNMLS 243
N +
Sbjct: 257 QNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 53/225 (23%), Positives = 83/225 (36%), Gaps = 40/225 (17%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
+ I S L+L +N+LQ P F +T L L+ S N ++ CS +
Sbjct: 24 TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ---------S 73
Query: 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKS 231
TSL LDLS N + + +F + L+ L + L +FL+ +
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR------N 127
Query: 232 LQSFMLQNNMLS-------GSLPGVTELD--------GTFPKQFCRPSSLVELDLESNQL 276
L + + L + L P F +L LDL QL
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321
++ +A L S LQVL+ SHNN + L+++
Sbjct: 188 E----QLSPTAFNSLSS---LQVLNMSHNNFFSLDTFPYKCLNSL 225
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 58/406 (14%), Positives = 115/406 (28%), Gaps = 102/406 (25%)
Query: 35 SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94
S+H+ S + L + +T L+ L + + +R + ++
Sbjct: 4 SHHHHHHSSGRENLYFQGSTA-LRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NN 57
Query: 95 LTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNY 153
+ L +A V L+L + L PD ++ L +T
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPD-QAFRLSHLQHMTIDAAG 115
Query: 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213
+ LP T+ L L L++N + +P S + L+ L I
Sbjct: 116 LM-----ELPDTM-------QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163
Query: 214 AKLPELFLNFSAGCAK---KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELD 270
+LPE + A +LQS L+ + + P +L L
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----------SLPASIANLQNLKSLK 212
Query: 271 LESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI 330
+ ++ L + P + P L+ LD P + +
Sbjct: 213 IRNSPL--------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL--------- 255
Query: 331 VEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL-- 388
K + L D + +P +I L
Sbjct: 256 -------------------------------------KRLILKDCSNLLTLPLDIHRLTQ 278
Query: 389 ----------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQ 424
+ ++P +QL ++ + + ++ P+
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHRPVA 323
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 41/352 (11%), Positives = 79/352 (22%), Gaps = 94/352 (26%)
Query: 108 SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167
+ H H S L + P D ++ + + ++
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNAD----RNRWHSAWRQ- 52
Query: 168 RPKYAFSNVTSLMDLDLSKNQITGIPKSFGD--MCCLKTLKIHDNILTAKLPELFLNFSA 225
+N + + + D L++ L + P+
Sbjct: 53 ------ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL-- 103
Query: 226 GCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285
LQ + L P + + L L L N L
Sbjct: 104 ----SHLQHMTIDAAGLM-----------ELPDTMQQFAGLETLTLARNPL--------R 140
Query: 286 SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE---YRIQLIDDPE 342
+ + S L+ L +P L + A ++ + + P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 343 FDYQDRALLVWKPIDSIYKIT------------LGLPKSI---------DLSDNNLSGKI 381
SI + L +I DL
Sbjct: 201 ---------------SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 382 PEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
P + +P +L+ L ++L ++PS I
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 43/239 (17%), Positives = 73/239 (30%), Gaps = 52/239 (21%)
Query: 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELD 71
L LQ + I + + + L +L+L LR L I L LREL
Sbjct: 103 LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA----LPASIASLNRLRELS 156
Query: 72 LSS-----SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLS---NSAYHCLSHISKSLVYL 123
+ + P + S + +L L L G+ S + ++L L
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-----QNLKSL 211
Query: 124 DLSNNQLQG-PTPDYAFRNMTSL---------------------ASLTSLNYITGISKCS 161
+ N+ L A ++ L A L L + CS
Sbjct: 212 KIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI----LKDCS 264
Query: 162 LPITLVRPKYAFSNVTSLMDLDLSKN-QITGIPKSFGDMCCLKTLKIHDNILTAKLPEL 219
+TL P +T L LDL ++ +P + + + ++
Sbjct: 265 NLLTL--PL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-16
Identities = 73/371 (19%), Positives = 110/371 (29%), Gaps = 136/371 (36%)
Query: 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDL 125
L++ S +L + + +T L + L++ L + L L++
Sbjct: 41 GNAVLNVGES-------GLTTLPDCLPAHITTLVIPDNNLTS-----LPALPPELRTLEV 88
Query: 126 SNNQLQG-PTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDL 184
S NQL P L L+ + LP + L L +
Sbjct: 89 SGNQLTSLPV------LPPGLLELSIFS----NPLTHLPALP----------SGLCKLWI 128
Query: 185 SKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244
NQ+T +P L+ L + DN L LP L L NN L+
Sbjct: 129 FGNQLTSLPVLPPG---LQELSVSDNQLA-SLPALP---------SELCKLWAYNNQLT- 174
Query: 245 SLPGVTELDGTFPKQFCRPSSLVELDLESNQ-------------LWLRFNHINGSATPKL 291
SLP PS L EL + NQ LW N + + P L
Sbjct: 175 SLPM-------------LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT--SLPAL 219
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALL 351
S L+ L S N ++ +P + L
Sbjct: 220 PSG--LKELIVSGNRLTS-LPVLPSEL--------------------------------- 243
Query: 352 VWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL--------LIGKIPRSFSQLSHL 403
K + +S N L+ +P + L + ++P S LS
Sbjct: 244 ----------------KELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 404 GVVNLSNNNFS 414
VNL N S
Sbjct: 287 TTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 5e-16
Identities = 69/300 (23%), Positives = 111/300 (37%), Gaps = 81/300 (27%)
Query: 37 HNKLTSL------SLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKI-NYRSH 85
+ LT+L + L + + + L + P LR L++S +S P
Sbjct: 49 ESGLTTLPDCLPAHITTLVIPD--NNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLEL 106
Query: 86 SLVNSSSSSLTHLHLSLCGL--SNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143
S+ ++ + L L LC L + L + L L +S+NQL
Sbjct: 107 SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-------- 158
Query: 144 SLASLTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM 199
+ L L N +T SLP+ + L +L +S NQ+ +P +
Sbjct: 159 LPSELCKLWAYNNQLT-----SLPMLP----------SGLQELSVSDNQLASLPTLPSE- 202
Query: 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259
L L ++N LT+ LP L L+ ++ N L+ SLP
Sbjct: 203 --LYKLWAYNNRLTS-LPALP---------SGLKELIVSGNRLT-SLP------------ 237
Query: 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
PS L EL + N+L ++ P L S L L N ++ +P L +LS
Sbjct: 238 -VLPSELKELMVSGNRL---------TSLPMLPSG--LLSLSVYRNQLT-RLPESLIHLS 284
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 51/332 (15%), Positives = 91/332 (27%), Gaps = 69/332 (20%)
Query: 37 HNKLTSL-----SLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKINYRSHSL 87
N+L SL L L + L + L+EL +S +S P
Sbjct: 150 DNQLASLPALPSELCKLWAYN--NQLTSLPMLPSGLQELSVSDNQLASLPTLP------- 200
Query: 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147
S L L L+ L + L L +S N+L +
Sbjct: 201 -----SELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSLPV--------LPSE 242
Query: 148 LTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLK 203
L L N +T SLP+ + L+ L + +NQ+T +P+S +
Sbjct: 243 LKELMVSGNRLT-----SLPMLP----------SGLLSLSVYRNQLTRLPESLIHLSSET 287
Query: 204 TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCR 262
T+ + N L+ A S + +
Sbjct: 288 TVNLEGNPLSE------RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 263 PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN-NISGMVPTCLNNLSAM 321
E + W F + + L + + +F + + + L L+
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAE- 400
Query: 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVW 353
+ + + +DR
Sbjct: 401 -----DEALRANTFAMATEATSSCEDRVTFFL 427
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 57/184 (30%)
Query: 259 QFCRPSSLVELDLESNQL------------WLRFNHINGSATPKLCSSPMLQVLDFSHNN 306
+ C + L++ + L L N ++ P L L+ L+ S N
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE--LRTLEVSGNQ 92
Query: 307 ISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGL 366
++ +P L + + L P GL
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPL------THLPALPS----------------------GL 123
Query: 367 PKSIDLSDNNLSGKIPEEITSL--------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
+ + N L+ +P L + +P S+L L NN + +P
Sbjct: 124 -CKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLT-SLP 177
Query: 419 SSIP 422
Sbjct: 178 MLPS 181
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 42/234 (17%)
Query: 93 SSLTHLHLS---LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
S +L LS L L + ++ L LDLS ++Q D A+++++ L++L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQT-IEDGAYQSLSHLSTLI 82
Query: 150 -SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKI 207
+ N I SL + AFS ++SL L + + + G + LK L +
Sbjct: 83 LTGNPIQ-----SLALG------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 208 HDNILTA-KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL 266
N++ + KLPE F N + +L+ L +N + S+ L
Sbjct: 132 AHNLIQSFKLPEYFSNLT------NLEHLDLSSNKIQ-SIY-----CTDL-------RVL 172
Query: 267 VELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
++ L + L L N +N P L+ L N + + + L++
Sbjct: 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 42/223 (18%)
Query: 62 TGLP-SLRELDLSSSAPPKINYRS-HSLVNSSSSSLTHLHLSLCGLSN---SAYHCLSHI 116
LP S + LDLS + + S S L L LS C + AY LS
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPE-----LQVLDLSRCEIQTIEDGAYQSLS-- 76
Query: 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSN 175
L L L+ N +Q AF ++SL L + + + +
Sbjct: 77 --HLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASL-----------ENFPIGH 122
Query: 176 VTSLMDLDLSKNQITGIPKS--FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
+ +L +L+++ N I F ++ L+ L + N + +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNL 180
Query: 234 SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
S L N ++ + G F + L EL L++NQL
Sbjct: 181 SLDLSLNPMN-FIQ-----PGAFKEI-----RLKELALDTNQL 212
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 70/236 (29%)
Query: 2 QISEAGFHISLEDLQSINIGLN---AIRVRKFDQ-------WLSYHNKLTSL-------- 43
+ F S +LQ +++ I + L+ N + SL
Sbjct: 42 HLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGL 99
Query: 44 -SLQGLDLRE--ATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHL 100
SLQ L E I L +L+EL+++ N +
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAH------N------------LIQSFK- 140
Query: 101 SLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-----SLNYIT 155
+ L+ +L +LDLS+N++Q R + + L SLN +
Sbjct: 141 -----LPEYFSNLT----NLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDN 210
I AF L +L L NQ+ +P F + L+ + +H N
Sbjct: 191 FI-----------QPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 31/194 (15%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
+ LDLS+N L ++ +T+L SL S N++ I A
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-----------SSEA 83
Query: 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F V +L LDLS N + + + F D+ L+ L +++N + F + +
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------Q 137
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
LQ L N +S P K + L+ LDL SN+L + + KL
Sbjct: 138 LQKLYLSQNQIS-RFP-----VELI-KDGNKLPKLMLLDLSSNKL----KKLPLTDLQKL 186
Query: 292 CSSPMLQVLDFSHN 305
+ + L +N
Sbjct: 187 -PAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLN 222
++ +R ++ + +T+L L LS N + I +F + L+ L + N L LF +
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNH 282
+L+ +L NN + + F + L +L L NQ+ +
Sbjct: 111 LQ------ALEVLLLYNNHIV-VVD---------RNAFEDMAQLQKLYLSQNQI----SR 150
Query: 283 INGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325
P L +LD S N + + T L L A V+NG
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 44/205 (21%), Positives = 65/205 (31%), Gaps = 53/205 (25%)
Query: 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQV-VITGLPSLRELDL 72
+++ N + + + + L SL L L + +P+LR LDL
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDL 95
Query: 73 SSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG 132
SS N H+L S L L L L NN +
Sbjct: 96 SS------N-HLHTLDEFLFSDLQALE----------------------VLLLYNNHIVV 126
Query: 133 PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNV---TSLMDLDLSKNQ 188
AF +M L L S N I+ P + LM LDLS N+
Sbjct: 127 -VDRNAFEDMAQLQKLYLSQNQISRF-----------PVELIKDGNKLPKLMLLDLSSNK 174
Query: 189 ITGIPK-SFGDMCCLK--TLKIHDN 210
+ +P + L +H+N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 46/278 (16%)
Query: 34 LSYHNKLTSLSLQGLDLREATDW--LQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91
L +H + S+ + L+ D+ T L +L + S + S +
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS----DVFGFPQSYIYEI 298
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150
S++ + ++ G C S IS ++LD SNN L T ++T L +L
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTD-TVFENCGHLTELETLILQ 356
Query: 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI--PKSFGDMCCLKTLKIH 208
+N + +SK + + + SL LD+S+N ++ L +L +
Sbjct: 357 MNQLKELSKIAE---------MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 209 DNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVE 268
NILT + ++ L +N + + PKQ + +L E
Sbjct: 408 SNILTDTIFRCLP--------PRIKVLDLHSNKIK-----------SIPKQVVKLEALQE 448
Query: 269 LDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306
L++ SNQL + +L S LQ + N
Sbjct: 449 LNVASNQL----KSVPDGIFDRLTS---LQKIWLHTNP 479
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 44/308 (14%)
Query: 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSL 67
SL + N + I D + L +++ + + ++ L +
Sbjct: 164 NTESLHIVFPTNKEFHFI----LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 68 RELDLSSSAPPKINYRS--HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS----KSLV 121
+L + + + S L +++ + +S L S K+L
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 122 YLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMD 181
+ ++ P Y + +++ ++ T + + S ++ +
Sbjct: 280 IHQVVSDVFGFP-QSYIYEIFSNM----NIKNFTVSGTRMVHML------CPSKISPFLH 328
Query: 182 LDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
LD S N +T ++ G + L+TL + N L +L ++ + KSLQ + N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM---KSLQQLDISQN 384
Query: 241 MLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVL 300
+S SL+ L++ SN L + T C P ++VL
Sbjct: 385 SVSYDEK---------KGDCSWTKSLLSLNMSSNIL---------TDTIFRCLPPRIKVL 426
Query: 301 DFSHNNIS 308
D N I
Sbjct: 427 DLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 50/246 (20%), Positives = 82/246 (33%), Gaps = 27/246 (10%)
Query: 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLR 68
H ++ N+ L + + L +LS+ + + ++
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYS--GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 69 ELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNN 128
+ + S H L S S HL S L+++ + H++ L L L N
Sbjct: 304 IKNFTVSG----TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMN 358
Query: 129 QLQG-PTPDYAFRNMTSLASL----TSLNYITGISKCSLPITLVR--------PKYAFSN 175
QL+ M SL L S++Y CS +L+ F
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 176 VTS-LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234
+ + LDL N+I IPK + L+ L + N L + +F SLQ
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRL------TSLQK 472
Query: 235 FMLQNN 240
L N
Sbjct: 473 IWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 49/322 (15%), Positives = 107/322 (33%), Gaps = 36/322 (11%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQV-- 59
+ ++ + L + L + + SL + +
Sbjct: 126 HLEKSSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184
Query: 60 VITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLS---NSAYHCLSHI 116
+ + +L ++ S++ ++ +L+L + NS L +
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244
Query: 117 S-KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSN 175
++ Y +SN +LQG F S TSL ++ I + + Y +
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDY-----SGTSLKALS-IHQVVSDVFGFPQSYIYEI 298
Query: 176 VTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234
+++ + + + + + L +N+LT + E + + L++
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT------ELET 352
Query: 235 FMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS 294
+LQ N L L + E+ + SL +LD+ N + + CS
Sbjct: 353 LILQMNQLK-ELSKIAEM-------TTQMKSLQQLDISQNSV-------SYDEKKGDCSW 397
Query: 295 PM-LQVLDFSHNNISGMVPTCL 315
L L+ S N ++ + CL
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL 419
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 38/306 (12%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
+S+ L++S N + +++ L L S N I +
Sbjct: 17 KDLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYL-----------DISV 64
Query: 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTA-KLPELFLNFSAGCAKKS 231
F L LDLS N++ I LK L + N A + + F N
Sbjct: 65 FKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNM------SQ 116
Query: 232 LQSFMLQNNML-SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ-LWLRFNHINGSATP 289
L+ L L S+ + L+ + + + D E Q HI
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 290 KLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRA 349
+ + V ++ +S + +N + + + + ++ + +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL------TLNNI 230
Query: 350 LLVWKPIDSIYKITLGLP-KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNL 408
W I ++ +S+ L G++ S + L L + +
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-------SGTSLKALSIHQV 283
Query: 409 SNNNFS 414
++ F
Sbjct: 284 VSDVFG 289
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 58/423 (13%), Positives = 127/423 (30%), Gaps = 63/423 (14%)
Query: 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95
N ++ L I L LR L +S + + V + L
Sbjct: 29 SQNYISELWTS-------------DILSLSKLRILIISHNRIQYL----DISVFKFNQEL 71
Query: 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT------ 149
+L LS L + H +L +LDLS N F NM+ L L
Sbjct: 72 EYLDLSHNKLVKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 150 ---SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLK 206
S+ I ++ + + L + L D + I ++K
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 207 IHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK--QFCRPS 264
N+ + + + + L + + +L + +F + Q +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM-VQ 323
++ + + +L + + + + S L + + S M ++
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYS--GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 324 NGSSNVIVEYRIQLIDDPEFDYQDRALLVW----KPIDSIYKITLGLPK--SIDLSDNNL 377
N + + +++ L + D++++ L + ++ L N L
Sbjct: 306 NFTVS-----GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 378 SGKIPEEI----------------TSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
++ + S+ + S L +N+S+N + I +
Sbjct: 361 K-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 422 PLQ 424
P +
Sbjct: 420 PPR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 76/420 (18%), Positives = 130/420 (30%), Gaps = 106/420 (25%)
Query: 32 QWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS-----SSAPPKI----NY 82
+ L + + LT + ++ + S E + +APP
Sbjct: 15 EPLRHSSNLTEMPVE--------------AENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNM 142
L + L L+ GLS+ L + L L S N L
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSS-----LPELPPHLESLVASCNSLTELPE------- 108
Query: 143 TSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCL 202
SL SL + +L L L +S NQ+ +P + L
Sbjct: 109 -LPQSLKSLLVD-NNNLKALS----------DLPPLLEYLGVSNNQLEKLP-ELQNSSFL 155
Query: 203 KTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS-----GSLPGVTELD---- 253
K + + +N L KLP+L SL+ NN L +LP +T +
Sbjct: 156 KIIDVDNNSLK-KLPDLP---------PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 254 --GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
P P SL + +N L P+L + P L + +N + +
Sbjct: 206 SLKKLPDL---PLSLESIVAGNNIL---------EELPELQNLPFLTTIYADNNLLK-TL 252
Query: 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRAL-LVWKPIDSIYKITLGLPKSI 370
P +L + L D PE L + + ++ L +
Sbjct: 253 PDLPPSLE---------ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL-YYL 302
Query: 371 DLSDNNLSGKIPEEITSL--------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422
+ S N + + + SL + ++P +L L S N+ + ++P
Sbjct: 303 NASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLA-EVPELPQ 357
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 69/399 (17%), Positives = 132/399 (33%), Gaps = 104/399 (26%)
Query: 36 YHNKLTSL-------SLQGLDLREATDWLQVVITGLPSLRELDLSS---SAPPKINYRSH 85
+N+L L L+ +D+ + L+ + PSL + + P++
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDN--NSLKKLPDLPPSLEFIAAGNNQLEELPEL----- 191
Query: 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145
+ LT ++ L L + SL + NN L+ +N+ L
Sbjct: 192 ----QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEELP---ELQNLPFL 239
Query: 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKT 204
++ N + +LP SL L++ N +T +P+ L
Sbjct: 240 TTIYADNNLLK-----TLPDLP----------PSLEALNVRDNYLTDLPELPQ---SLTF 281
Query: 205 LKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264
L + +NI + L EL +L +N + SL P
Sbjct: 282 LDVSENIFS-GLSELP---------PNLYYLNASSNEIR-SLCD-------------LPP 317
Query: 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQN 324
SL EL++ +N+L P L L+ L S N+++ VP NL + +
Sbjct: 318 SLEELNVSNNKL---------IELPALPPR--LERLIASFNHLA-EVPELPQNLKQL--H 363
Query: 325 GSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEE 384
N L + P+ L + + + ++ L K + + N L + P+
Sbjct: 364 VEYN-------PLREFPDIPESVEDLRMNSHLAEVPELPQNL-KQLHVETNPLR-EFPDI 414
Query: 385 ITSL---------LIGKIPRSFSQLSHLGVVNLSNNNFS 414
S+ ++ + L +++
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 9e-14
Identities = 41/208 (19%), Positives = 65/208 (31%), Gaps = 21/208 (10%)
Query: 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLR 68
L L N+ + L LS+ + + P+L
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ---VRVFPALS 176
Query: 69 ELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHC--LSHISKSLVYLDLS 126
LDLS + +L +L L L G+ + C L+ L LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 127 NNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLS 185
+N L+ + + L SL S + + K L LDLS
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--------------KLSVLDLS 282
Query: 186 KNQITGIPKSFGDMCCLKTLKIHDNILT 213
N++ P S ++ + L + N
Sbjct: 283 YNRLDRNP-SPDELPQVGNLSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 3e-11
Identities = 42/277 (15%), Positives = 71/277 (25%), Gaps = 41/277 (14%)
Query: 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS-SAPPKINYRSHSLVNSSSSSLTH 97
L L+++ + + + + G+ L+EL L + + L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 98 LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG 156
++S + L L ++ R +L++L S N G
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELG 187
Query: 157 ISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK----SFGDMCCLKTLKIHDNIL 212
L L +L L L + L+ L + N L
Sbjct: 188 ER--GLISALC-----PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240
Query: 213 TAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLE 272
++ L S L L +P P+ L LDL
Sbjct: 241 RDAAGAPSCDWP-----SQLNSLNLSFTGLK-QVPK------------GLPAKLSVLDLS 282
Query: 273 SNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309
N+L P P + L N
Sbjct: 283 YNRL---------DRNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 56/338 (16%), Positives = 99/338 (29%), Gaps = 75/338 (22%)
Query: 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147
+ SL +L + ++ S SL L + ++ P +
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLG 93
Query: 148 LTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC-----L 202
++ L +T + + T P + L L+L ++ L
Sbjct: 94 ISGLQELT-LENLEVTGTAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGL 151
Query: 203 KTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCR 262
K L I E F +L + L +N G ++ L P +F
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVF------PALSTLDLSDNPELGERGLISAL---CPLKF-- 200
Query: 263 PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322
+L L L + + +G + + LQ LD SHN++ + + +
Sbjct: 201 -PTLQVLALRNAGM----ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 323 Q--NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSI---DLSDNNL 377
N S + ++ GLP + DLS N L
Sbjct: 256 NSLNLSFT-----------------------------GLKQVPKGLPAKLSVLDLSYNRL 286
Query: 378 SGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSG 415
P S +L +G ++L N F
Sbjct: 287 DR-NP-------------SPDELPQVGNLSLKGNPFLD 310
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 9e-14
Identities = 57/316 (18%), Positives = 102/316 (32%), Gaps = 89/316 (28%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
+ N + G T F + L L+ +L
Sbjct: 15 QNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---------NQFSEL 64
Query: 183 DLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242
L++ ++ +P + + L+I N L + LPEL SL+ +N L
Sbjct: 65 QLNRLNLSSLPDNLPP--QITVLEITQNALIS-LPELP---------ASLEYLDACDNRL 112
Query: 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ-------------LWLRFNHINGSATP 289
S +LP P+SL LD+++NQ + N + + P
Sbjct: 113 S-TLPE-------------LPASLKHLDVDNNQLTMLPELPALLEYINADNNQL--TMLP 156
Query: 290 KLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRA 349
+L +S L+VL +N ++ +P +L A+ + S+N L P ++
Sbjct: 157 ELPTS--LEVLSVRNNQLTF-LPELPESLEAL--DVSTN-------LLESLPAVPVRNHH 204
Query: 350 LLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409
+N ++ IP + L + L
Sbjct: 205 SEE-------------TEIFFRCRENRIT-------------HIPENILSLDPTCTIILE 238
Query: 410 NNNFSGKIPSSIPLQT 425
+N S +I S+ QT
Sbjct: 239 DNPLSSRIRESLSQQT 254
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 62/314 (19%), Positives = 105/314 (33%), Gaps = 79/314 (25%)
Query: 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKINYRSHSLVNSSSS 93
+K +L G + EA L+ + + EL L+ SS P +
Sbjct: 34 DKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNL-----------PP 80
Query: 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-- 151
+T L ++ L + L + SL YLD +N+L P+ ASL L
Sbjct: 81 QITVLEITQNALIS-----LPELPASLEYLDACDNRLST-LPE-------LPASLKHLDV 127
Query: 152 --NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD 209
N +T LP L ++ NQ+T +P+ L+ L + +
Sbjct: 128 DNNQLT-----MLP----------ELPALLEYINADNNQLTMLPEL---PTSLEVLSVRN 169
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVEL 269
N LT LPEL +SL++ + N+L + P R E
Sbjct: 170 NQLTF-LPELP---------ESLEALDVSTNLLE-----------SLPAVPVRNHHSEET 208
Query: 270 DLESNQLWLRFNHINGSATPK-LCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328
++ R N I + P+ + S + N +S + L+ +A
Sbjct: 209 EIF---FRCRENRI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263
Query: 329 VIVEYRIQLIDDPE 342
+ +
Sbjct: 264 IYFSMSDGQQNTLH 277
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 3e-13
Identities = 51/300 (17%), Positives = 97/300 (32%), Gaps = 60/300 (20%)
Query: 36 YHNKLTSL-----SLQGLDLREATDWLQVVITGLPSLRELDLS----SSAPPKINYRSHS 86
N L SL SL+ LD + L + SL+ LD+ + P
Sbjct: 88 TQNALISLPELPASLEYLDACDNR--LSTLPELPASLKHLDVDNNQLTMLPELP------ 139
Query: 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146
+ L +++ L+ L + SL L + NNQL P+
Sbjct: 140 ------ALLEYINADNNQLT-----MLPELPTSLEVLSVRNNQLTFL-PE-------LPE 180
Query: 147 SLTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCL 202
SL +L N + SLP VR + + + +N+IT IP++ +
Sbjct: 181 SLEALDVSTNLLE-----SLPAVPVRNH---HSEETEIFFRCRENRITHIPENILSLDPT 232
Query: 203 KTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCR 262
T+ + DN L++++ E ++++ Q + G
Sbjct: 233 CTIILEDNPLSSRIRES-------LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
Query: 263 PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH-----NNISGMVPTCLNN 317
+ +Q+W F H + T + + + ++ + +
Sbjct: 286 AWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSAS 345
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 49/289 (16%), Positives = 86/289 (29%), Gaps = 106/289 (36%)
Query: 141 NMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMC 200
N SL+ + N I+ A+ ++N+ + K +
Sbjct: 9 NNFSLSQNSFYNTIS-----GTYADYFS---AWDKWEKQALPGENRNEAVSLLKECL-IN 59
Query: 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF 260
L+++ L++ LP+ + + N L SLP
Sbjct: 60 QFSELQLNRLNLSS-LPDNLP--------PQITVLEITQNALI-SLP------------- 96
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
P+SL LD N+L S P+L +S L+ LD +N ++ M+P L
Sbjct: 97 ELPASLEYLDACDNRL---------STLPELPAS--LKHLDVDNNQLT-MLPELPALL-- 142
Query: 321 MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380
+ I+ +N L+
Sbjct: 143 -----------------------------------------------EYINADNNQLT-M 154
Query: 381 IPEEITSL--------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
+PE TSL + +P L L ++S N +P+
Sbjct: 155 LPELPTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLES-LPAVP 199
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 61/318 (19%), Positives = 105/318 (33%), Gaps = 45/318 (14%)
Query: 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDW--LQVVITGLPSLREL 70
D+QS++I + ++ + L + + L L EA + + P+L EL
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAEL 61
Query: 71 DLSSSAPPKINYRSHSLV----NSSSSSLTHLHLSLCGLSNSAYHCLSHI---SKSLVYL 123
+L S+ ++ V + S + L L C L+ + LS +L L
Sbjct: 62 NLRSN---ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 124 DLSNNQLQGPTPDYAFRNMTSLA-----SLTSLNYITGISKCSLPITLVRP-KYAFSNVT 177
LS+N L D + + L L + CSL P
Sbjct: 119 HLSDNLLG----DAGLQLLCEGLLDPQCRLEKLQ----LEYCSLSAASCEPLASVLRAKP 170
Query: 178 SLMDLDLSKNQI--TGIPKSFGDM-----CCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
+L +S N I G+ + C L+ LK+ +T+ +K
Sbjct: 171 DFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDL--CGIVASKA 227
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPK 290
SL+ L +N L G+ EL L L + + +
Sbjct: 228 SLRELALGSNKLGDV--GMAELCPGLLHPSS---RLRTLWIWECGITAKGCGDLCRV--- 279
Query: 291 LCSSPMLQVLDFSHNNIS 308
L + L+ L + N +
Sbjct: 280 LRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 47/252 (18%), Positives = 80/252 (31%), Gaps = 48/252 (19%)
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPD------YAFRNMTSL 145
S + L + LS++ + L + + + L + L T A R +L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL---TEARCKDISSALRVNPAL 58
Query: 146 ASLT-SLNYIT---------GISKCSLPITLVRPKY-------------AFSNVTSLMDL 182
A L N + G+ S I + + + +L +L
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 183 DLSKNQITG-----IPKSFGDMCC-LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
LS N + + + D C L+ L++ L+A E S AK +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL--ASVLRAKPDFKELT 176
Query: 237 LQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPM 296
+ NN ++ + GV L C L L LES + + S
Sbjct: 177 VSNNDINEA--GVRVLCQGLKDSPC---QLEALKLESCGVTSDNCRDLCGI---VASKAS 228
Query: 297 LQVLDFSHNNIS 308
L+ L N +
Sbjct: 229 LRELALGSNKLG 240
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 66/322 (20%), Positives = 104/322 (32%), Gaps = 66/322 (20%)
Query: 34 LSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV---- 88
L +L L L+ L A + L V+ P +EL +S++ IN ++
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN---DINEAGVRVLCQGL 194
Query: 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHI---SKSLVYLDLSNNQLQGPT----PDYAFRN 141
S L L L CG+++ L I SL L L +N+L
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254
Query: 142 MTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT--GIPKSFGD 198
+ L +L IT L SL +L L+ N++ G + +
Sbjct: 255 SSRLRTLWIWECGITAKGCGDL-------CRVLRAKESLKELSLAGNELGDEGA-RLLCE 306
Query: 199 M-----CCLKTLKIHDNILTAKLPELFLNFSAGCAK-KSLQSFMLQNNMLSGSLPGVTEL 252
C L++L + TA +FS+ A+ + L + NN L + GV EL
Sbjct: 307 TLLEPGCQLESLWVKSCSFTA---ACCSHFSSVLAQNRFLLELQISNNRLEDA--GVREL 361
Query: 253 DGTFPKQFCRPSSLVELDLESNQ---------------------LWLRFNHINGSATPKL 291
+ L L L L L N + + +L
Sbjct: 362 CQGLGQPGS---VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418
Query: 292 CSS-----PMLQVLDFSHNNIS 308
S +L+ L S
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 28/202 (13%)
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTS-LASLTSLNYITGISKCSLPITLVRP-KYAF 173
+S + LD+ +L D + + L + + C L + A
Sbjct: 1 MSLDIQSLDIQCEELS----DARWAELLPLLQQCQVVR----LDDCGLTEARCKDISSAL 52
Query: 174 SNVTSLMDLDLSKNQIT--GIPKSFGDM-----CCLKTLKIHDNILTAKLPELFLNFSAG 226
+L +L+L N++ G+ C ++ L + + LT + S
Sbjct: 53 RVNPALAELNLRSNELGDVGV-HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL--SSTL 109
Query: 227 CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS 286
+LQ L +N+L + G+ L C L +L LE L S
Sbjct: 110 RTLPTLQELHLSDNLLGDA--GLQLLCEGLLDPQC---RLEKLQLEYCSLSAASCEPLAS 164
Query: 287 ATPKLCSSPMLQVLDFSHNNIS 308
L + P + L S+N+I+
Sbjct: 165 V---LRAKPDFKELTVSNNDIN 183
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 40/208 (19%), Positives = 70/208 (33%), Gaps = 43/208 (20%)
Query: 34 LSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSLRELDLSSSAPPKINYRSHS------ 86
L ++L +L + + L V+ SL+EL L+ N
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG------NELGDEGARLLC 305
Query: 87 -LVNSSSSSLTHLHLSLCGLSNSAYHCLS---HISKSLVYLDLSNNQLQGPTPDYAFRN- 141
+ L L + C + + S ++ L+ L +SNN+L+ D R
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE----DAGVREL 361
Query: 142 ----MTSLASLTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT--- 190
+ L L ++ S SL SL +LDLS N +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSL-------AATLLANHSLRELDLSNNCLGDAG 414
Query: 191 --GIPKSFGDMCC-LKTLKIHDNILTAK 215
+ +S C L+ L ++D + +
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWSEE 442
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 43/241 (17%), Positives = 67/241 (27%), Gaps = 38/241 (15%)
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL 151
+ L L L S L +++S N + F N+ L +
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87
Query: 152 --NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIH 208
N + I AF N+ +L L +S I +P L I
Sbjct: 88 KANNLLYI-----------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 209 DNILTAKLPE-LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLV 267
DNI + F+ S L N + + + F + L
Sbjct: 137 DNINIHTIERNSFVGLSF-----ESVILWLNKNGIQ-EIH-----NSAF-----NGTQLD 180
Query: 268 ELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327
EL+L N + +LD S I + L NL + +
Sbjct: 181 ELNLSDNNNL---EELPNDVFHGA---SGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234
Query: 328 N 328
N
Sbjct: 235 N 235
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 49/308 (15%), Positives = 88/308 (28%), Gaps = 101/308 (32%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
+++ P RN L + I K AFS L +
Sbjct: 14 FLCQESKVTE-IPSDLPRNAIEL-RFVL-TKLRVI-----------QKGAFSGFGDLEKI 59
Query: 183 DLSKNQITGI--PKSFGDMCCLKTLKI-HDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
++S+N + + F ++ L ++I N L PE F N +LQ ++ N
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP------NLQYLLISN 113
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
+ LP V V LD++ N + + I ++ L +
Sbjct: 114 TGIK-HLPDVH---------KIHSLQKVLLDIQDN---INIHTIERNSFVGLSFE--SVI 158
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359
L + N I + + N
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQL--------------------------------------- 179
Query: 360 YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419
++LSDNN ++P ++ F S ++++S
Sbjct: 180 --------DELNLSDNNNLEELPNDV-----------FHGASGPVILDISRTRI-----H 215
Query: 420 SIPLQTFE 427
S+P E
Sbjct: 216 SLPSYGLE 223
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 27/179 (15%), Positives = 47/179 (26%), Gaps = 35/179 (19%)
Query: 34 LSYHNKLTSL---------SLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINY 82
+ N L + +LQ L + V LD+ N
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD------NI 139
Query: 83 RSHSLVNSS----SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYA 138
H++ +S S L L+ G+ + ++ NN L+ P+
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEE-LPNDV 197
Query: 139 FRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196
F + L S I + P Y N+ L + +
Sbjct: 198 FHGASGPVILDISRTRIHSL-----------PSYGLENLKKLRARSTYNLKKLPTLEKL 245
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 6e-12
Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 58/261 (22%)
Query: 63 GLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSL 120
+ +L + ++ + +S+ + + + + + I ++
Sbjct: 19 AFAETIKDNLKK------KSVTDAVTQNELNSIDQIIANNSDIKS-----VQGIQYLPNV 67
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLM 180
L L+ N+L P +N+ L N I +S + ++ L
Sbjct: 68 TKLFLNGNKLTDIKPLTNLKNLGWL--FLDENKIKDLS-------------SLKDLKKLK 112
Query: 181 DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
L L N I+ I + L++L + +N +T + + L + L++N
Sbjct: 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT--------DITVLSRLTKLDTLSLEDN 163
Query: 241 MLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVL 300
+S + + L + L L L N + S L L VL
Sbjct: 164 QIS-DIVPLAGL-----------TKLQNLYLSKNHI---------SDLRALAGLKNLDVL 202
Query: 301 DFSHNNISGMVPTCLNNLSAM 321
+ +NL
Sbjct: 203 ELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 6e-08
Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 51/212 (24%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
+ + N+ ++ + N + + D++ I LP++ +L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 70
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNN 128
L+ + I ++ L N L L L + + LS + K L L L +N
Sbjct: 71 FLNGNKLTDIKPLTN-LKN-----LGWLFLDENKIKD-----LSSLKDLKKLKSLSLEHN 119
Query: 129 QLQGPTPDYAFRNMTSLASLTSL-------NYITGISKCSLPITLVRPKYAFSNVTSLMD 181
+ ++ L L L N IT I+ S +T L
Sbjct: 120 GI---------SDINGLVHLPQLESLYLGNNKITDIT-------------VLSRLTKLDT 157
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213
L L NQI+ I + L+ L + N ++
Sbjct: 158 LSLEDNQISDIV-PLAGLTKLQNLYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 38/161 (23%)
Query: 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT--------AKLPELFLNF- 223
+ +L K +T + ++ + + +++ + + +LFLN
Sbjct: 17 DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 75
Query: 224 -----SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWL 278
K+L L N + L + +L L L LE N +
Sbjct: 76 KLTDIKPLTNLKNLGWLFLDENKIK-DLSSLKDL-----------KKLKSLSLEHNGI-- 121
Query: 279 RFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
+ ING L P L+ L +N I+ + T L+ L+
Sbjct: 122 --SDING-----LVHLPQLESLYLGNNKITDI--TVLSRLT 153
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 42/224 (18%)
Query: 57 LQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLS---LCGLSNSAYHC 112
L + + +P ++LDL S+ + S + L L+L+ L L +
Sbjct: 28 LTAIPSNIPADTKKLDLQSNKLSSL----PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171
L +L L +++N+LQ P F + +LA L N + + P
Sbjct: 84 LK----NLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSL-----------PPR 127
Query: 172 AFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
F ++T L L L N++ +PK F + LK L++++N L F +
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT------ 181
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274
L++ L NN L +P F L L L+ N
Sbjct: 182 ELKTLKLDNNQLK-RVPEGA---------FDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 169 PKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGC 227
P AF +T L L L+ N++ +P F ++ L+TL + DN L A +F
Sbjct: 53 PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV--- 109
Query: 228 AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW 277
+L L N L SLP F + L L L N+L
Sbjct: 110 ---NLAELRLDRNQLK-SLP-----PRVFDSL----TKLTYLSLGYNELQ 146
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 177 TSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235
LDL N+++ +P K+F + L+ L ++DN L +F L++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN------LETL 90
Query: 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
+ +N L +LP F + +L EL L+ NQL
Sbjct: 91 WVTDNKLQ-ALP---------IGVFDQLVNLAELRLDRNQL 121
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 40/247 (16%)
Query: 80 INYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLS-NNQLQGPTPDYA 138
+ + + S S L L L H S++ ++ + +S + LQ ++
Sbjct: 18 VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQ-LESHS 75
Query: 139 FRNMTSLA--SLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--K 194
F N++ + + + +T I A + L L + + P
Sbjct: 76 FYNLSKVTHIEIRNTRNLTYI-----------DPDALKELPLLKFLGIFNTGLKMFPDLT 124
Query: 195 SFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253
L+I DN +P F + L NN + S+
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFT-SVQ-----G 173
Query: 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT 313
F + L + L N+ +L I+ A + S +LD S +++ +
Sbjct: 174 YAF-----NGTKLDAVYLNKNK-YLT--VIDKDAFGGVYSG--PSLLDVSQTSVTALPSK 223
Query: 314 CLNNLSA 320
L +L
Sbjct: 224 GLEHLKE 230
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 38/198 (19%)
Query: 62 TGLPSLRELDLSSSAPPKINYRSHSLVN---SSSSSLTHLHLS----LCGLSNSAYHCLS 114
+ LP++ + +S + L + + S +TH+ + L + A L
Sbjct: 52 SNLPNISRIYVSI------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105
Query: 115 HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL--NYITGISKCSLPITLVRPKYA 172
L +L + N L+ + L Y+T I P A
Sbjct: 106 ----LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI-----------PVNA 150
Query: 173 FSNVTS-LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKK 230
F + + + L L N T + + L + ++ N + + F
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-----VYS 205
Query: 231 SLQSFMLQNNMLSGSLPG 248
+ ++ +LP
Sbjct: 206 GPSLLDVSQTSVT-ALPS 222
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 36/195 (18%)
Query: 33 WLSYHNKLTSL---------SLQGLDLREATDWLQV---VITGLPSLRELDLSSSAPPKI 80
++S L L + +++R + + + LP L+ L + ++ +
Sbjct: 61 YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT---GL 117
Query: 81 NYRSHSLVNSSSSSLTHLHLS-LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAF 139
S+ L ++ +++ + + + L L NN YAF
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAF 176
Query: 140 RNMTSLASLTSL--NYITGISKCSLPITLVRPKYAFSNVTS-LMDLDLSKNQITGIP-KS 195
T L ++ Y+T I K AF V S LD+S+ +T +P K
Sbjct: 177 NG-TKLDAVYLNKNKYLTVI-----------DKDAFGGVYSGPSLLDVSQTSVTALPSKG 224
Query: 196 FGDMCCLKTLKIHDN 210
LK L +
Sbjct: 225 LEH---LKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 38/302 (12%), Positives = 85/302 (28%), Gaps = 93/302 (30%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASL--TSLNYITGISKCSLPITLVRPK 170
+ + S L L L+ P +AF N+ +++ + + + +
Sbjct: 26 IPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQL-----------ES 73
Query: 171 YAFSNVTSLMDLDLSKNQ-ITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228
++F N++ + +++ + +T I ++ LK L I + L F + + +
Sbjct: 74 HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPDLTKVYS 128
Query: 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT 288
+ +N S+P F + + L L +N + G A
Sbjct: 129 TDIFFILEITDNPYMTSIP-----VNAFQGL---CNETLTLKLYNNGFT----SVQGYAF 176
Query: 289 PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDR 348
+ L + + N + +ID F
Sbjct: 177 ----NGTKLDAVYLNKNK---------------------------YLTVIDKDAFGGVYS 205
Query: 349 ALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNL 408
+D+S +++ +P + L L N
Sbjct: 206 GP-----------------SLLDVSQTSVT-ALP-----------SKGLEHLKELIARNT 236
Query: 409 SN 410
Sbjct: 237 WT 238
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 34/188 (18%)
Query: 36 YHNKLTSLS---------LQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86
N L + S L L+L A V LP L LDLS + +S
Sbjct: 39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-----LQSLP 93
Query: 87 LVNSSSSSLTHLHLS---LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143
L+ + +LT L +S L L A L L L L N+L+ P
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLG----ELQELYLKGNELKTL-PPGLLTPTP 148
Query: 144 SLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCL 202
L L+ + N +T + P + + +L L L +N + IPK F L
Sbjct: 149 KLEKLSLANNNLTEL-----------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 203 KTLKIHDN 210
+H N
Sbjct: 198 PFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 36/164 (21%), Positives = 50/164 (30%), Gaps = 31/164 (18%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
+ K L LS N L + T L L +T +
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQ-------------V 72
Query: 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232
+ L LDLS NQ+ +P + L L + N LT+ L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------L 126
Query: 233 QSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
Q L+ N L +LP G L +L L +N L
Sbjct: 127 QELYLKGNELK-TLP-----PGLLTPT----PKLEKLSLANNNL 160
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 39/209 (18%)
Query: 112 CLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKY 171
C S + ++ L P ++ T L L+ N +
Sbjct: 4 CEVSKVASHLEVNCDKRNLTA-LPPDLPKDTTIL-HLSE-NLLYTF-----------SLA 49
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
T L L+L + ++T + G + L TL + N L + LP L A
Sbjct: 50 TLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPA------ 101
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
L + N L+ SLP L EL L+ N+L +
Sbjct: 102 LTVLDVSFNRLT-SLP---------LGALRGLGELQELYLKGNEL----KTLPPGLLTPT 147
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
P L+ L ++NN++ + LN L
Sbjct: 148 ---PKLEKLSLANNNLTELPAGLLNGLEN 173
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 7e-11
Identities = 41/265 (15%), Positives = 72/265 (27%), Gaps = 56/265 (21%)
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHI---SKSLVYLDLSNNQLQGPTPD------YAFRN 141
+ S+ L L ++ + + S+ + LS N + + +
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI---GTEAARWLSENIAS 58
Query: 142 MTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT-----GIPKSF 196
L + TG K +P L A L + LS N +
Sbjct: 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118
Query: 197 GDMCCLKTLKIHDNILT-------AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249
L+ L +H+N L A+ + L+S + N L +
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--GSM 176
Query: 250 TELDGTFPKQFCRPSSLVELDLESNQ----------------------LWLRFNHINGSA 287
E K F L + + N L L+ N
Sbjct: 177 KEWA----KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232
Query: 288 TPKLCSS----PMLQVLDFSHNNIS 308
+ L + P L+ L + +S
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLS 257
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 55/325 (16%), Positives = 100/325 (30%), Gaps = 65/325 (20%)
Query: 40 LTSLSLQGLDLR------EATDWLQVVITGLPSLRELDLSSSA--PPKINYRSHSLVNSS 91
+ S++G L+ E + V+ S++E+ LS + + S ++ +S
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI--AS 58
Query: 92 SSSLTHLHLSLCG---LSNSAYHCLSHIS------KSLVYLDLSNNQLQGPTPDY---AF 139
L S + + L + L + LS+N +
Sbjct: 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118
Query: 140 RNMTSLASLT-SLNYIT--GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT-----G 191
T L L N + +K + + + N L + +N++
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Query: 192 IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251
K+F L T+K+ N + + E L + L+ LQ+N + G +
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHL--GSSA 235
Query: 252 LDGTFPKQFCRPSSLVELDLESNQ-----------------------LWLRFNHINGSAT 288
L +L EL L L L++N I A
Sbjct: 236 LAIALKSW----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 289 PKLCSS-----PMLQVLDFSHNNIS 308
L + P L L+ + N S
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 58/316 (18%), Positives = 91/316 (28%), Gaps = 64/316 (20%)
Query: 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93
LTSL + + T I L L +L +S+ I +L S ++
Sbjct: 38 EEQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLICTSN---NIT----TLDLSQNT 85
Query: 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152
+LT+L L+N L L YL+ N+L L L + N
Sbjct: 86 NLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLT----KLDVSQNPLLTYLNCARN 137
Query: 153 YITGISKCSLP--------ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKT 204
+T I + K + T L LD S N+IT + L
Sbjct: 138 TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNR 195
Query: 205 LKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS----GSLPGVTELD------G 254
L N +T L+ + L +N L+ L +T D
Sbjct: 196 LNCDTNNITK------LDLN---QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT 246
Query: 255 TFPKQFCRPSSLVELDLESNQL------------WLRFNHINGSATPKLCSSPMLQVLDF 302
S L L L + + + + L +LD
Sbjct: 247 ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304
Query: 303 SHNNISGMVPTCLNNL 318
I+ + + L
Sbjct: 305 QAAGITELDLSQNPKL 320
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 62/331 (18%), Positives = 91/331 (27%), Gaps = 71/331 (21%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
L L +N N + K D +S + LT L+ L E + ++ L EL
Sbjct: 104 PLTKLTYLNCDTNKLT--KLD--VSQNPLLTYLNCARNTLTE------IDVSHNTQLTEL 153
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
D N + L + + LT L S ++ K L L+ N +
Sbjct: 154 DCHL------NKKITKLDVTPQTQLTTLDCSFNKITELDVSQN----KLLNRLNCDTNNI 203
Query: 131 QGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQI 189
L L S N +T I + +T L D S N +
Sbjct: 204 TKLD----LNQNIQLTFLDCSSNKLTEID--------------VTPLTQLTYFDCSVNPL 245
Query: 190 TGIPKSFGDMCCLKTLKIHDNILT-------AKLPELFLN------FSAGCAKKSLQSFM 236
T + S + L TL L +L L
Sbjct: 246 TELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303
Query: 237 LQNNMLS----GSLPGVTELDGTFPKQFCRPSSLVELDLESNQ----LWLRFNHINGSAT 288
Q ++ P + L + L ELD+ N L HI
Sbjct: 304 CQAAGITELDLSQNPKLVYLY-------LNNTELTELDVSHNTKLKSLSCVNAHI--QDF 354
Query: 289 PKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
+ P L + M L N S
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNS 385
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 59/269 (21%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
+L + I G + + + + +T+LS G + + L +L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGL 68
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNN 128
+L N + + + +T L LS L N +S I+ +S+ LDL++
Sbjct: 69 ELKD------NQITDLAPLKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLDLTST 117
Query: 129 QLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN 187
Q+ TP +++L L LN IT IS + +T+L L +
Sbjct: 118 QITDVTP---LAGLSNLQVLYLDLNQITNIS-------------PLAGLTNLQYLSIGNA 161
Query: 188 QITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
Q++ + ++ L TLK DN ++ + S + +L L+NN +S +
Sbjct: 162 QVSDLT-PLANLSKLTTLKADDNKIS--------DISPLASLPNLIEVHLKNNQIS-DVS 211
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQL 276
+ S+L + L + +
Sbjct: 212 PLANT-----------SNLFIVTLTNQTI 229
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 54/331 (16%), Positives = 106/331 (32%), Gaps = 108/331 (32%)
Query: 63 GLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSL 120
L + ++ + + ++ + +T L G++ + + +L
Sbjct: 17 ALANAIKIAAGK------SNVTDTVTQADLDGITTLSAFGTGVTT-----IEGVQYLNNL 65
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
+ L+L +NQ+ P +N+T + L S N + +S A + + S+
Sbjct: 66 IGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS-------------AIAGLQSI 109
Query: 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239
LDL+ QIT + + L+ L + N +T N S +LQ + N
Sbjct: 110 KTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQIT--------NISPLAGLTNLQYLSIGN 160
Query: 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQV 299
+S L + L S L L + N++ S L S P L
Sbjct: 161 AQVS-DLTPLANL-----------SKLTTLKADDNKI---------SDISPLASLPNLIE 199
Query: 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359
+ +N IS + P L N S +
Sbjct: 200 VHLKNNQISDVSP--LANTSNL-------------------------------------- 219
Query: 360 YKITLGLPKSIDLSDNNLSGKIPEEITSLLI 390
+ L++ ++ + +L++
Sbjct: 220 --------FIVTLTNQTITNQPVFYNNNLVV 242
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 38/171 (22%)
Query: 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
+ + + + K+ +T + D+ + TL +T + + +L
Sbjct: 16 PALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT-TIEGV-------QYLNNLI 66
Query: 234 SFMLQNNMLS-----GSLPGVTELDGTF-----PKQFCRPSSLVELDLESNQ-------- 275
L++N ++ +L +TEL+ + S+ LDL S Q
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 276 -------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
L+L N I + L LQ L + +S + P L NLS
Sbjct: 127 GLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLS 173
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 27/253 (10%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI 61
++ + + +E L N+ + +++ L SL ++ + + + +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTIT--ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 62 TGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLV 121
+ + LS S P I H + S SS T L+ + ++S + S + + L
Sbjct: 326 SVFAEMNIKMLSISDTPFI----HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQ 380
Query: 122 YLDLSNNQLQG-PTPDYAFRNMTSLA----SLTSLNYITGISKCSLPITLVR-------- 168
L L N L+ +NM+SL SL SLN C+ +++
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 169 PKYAFSN-VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGC 227
F + LDL N+I IPK + L+ L + N L + +F
Sbjct: 441 TGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL---- 496
Query: 228 AKKSLQSFMLQNN 240
SLQ L +N
Sbjct: 497 --TSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 43/280 (15%)
Query: 38 NKLTSLSLQGLDLREAT----DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93
N L L L + L + +T P+L + L
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT-WKCSVKLFQFFWPR 276
Query: 94 SLTHLHLSLCGLSNSAYHCLSHIS----KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
+ +L++ ++ S KSL+ + N + + +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS-KEALYSVFAEMNIK- 334
Query: 150 SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIH 208
++ + + + +S L+ ++N T + + L+TL +
Sbjct: 335 ---MLSISDTPFIHMV------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 209 DNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVE 268
N L ++ L ++ S + L+ + + S++
Sbjct: 386 RNGLKN-FFKVALMTK------NMSSLETLDVSLNSLNSHA------YDRTCAWAESILV 432
Query: 269 LDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308
L+L SN L + + C P ++VLD +N I
Sbjct: 433 LNLSSNML---------TGSVFRCLPPKVKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 44/318 (13%), Positives = 93/318 (29%), Gaps = 33/318 (10%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI 61
Q+ +++ I+ + + + + L L + V
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219
Query: 62 TGLPSLRELDLSSSAPPKI-NYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS- 119
G L + L+ ++ + S + ++T H+ +
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET--TWKCSVKLFQFFWPRP 277
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
+ YL++ N + F + + ++ + L + +S +
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK------NQVFLFSKEALYSVFAEM 331
Query: 180 MDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
LS + I L N+ T + + LQ+ +LQ
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK------RLQTLILQ 385
Query: 239 NNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPM-L 297
N L + V ++ L+ L N +N A + C+ +
Sbjct: 386 RNGLK-NFFKV----------ALMTKNMSSLETLDVSL----NSLNSHAYDRTCAWAESI 430
Query: 298 QVLDFSHNNISGMVPTCL 315
VL+ S N ++G V CL
Sbjct: 431 LVLNLSSNMLTGSVFRCL 448
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 31/282 (10%)
Query: 11 SLEDLQSINIGLNAIRVRKFD---QWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSL 67
+L LQ NI LN ++ L+ L +++LQ ++ +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 68 RELDLSS-SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLS 126
L++ + + +I+ + ++ SL H+ S S ++ + LS
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLS 337
Query: 127 NNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLS 185
+ + +S L + N T S + L L L
Sbjct: 338 ISDTPFI-HMVCPPSPSSFTFLNFTQNVFTDS-----------VFQGCSTLKRLQTLILQ 385
Query: 186 KNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245
+N + K + +L+ D L + + A +S+ L +NML+GS
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--AESILVLNLSSNMLTGS 443
Query: 246 L-----PGVTELD------GTFPKQFCRPSSLVELDLESNQL 276
+ P V LD + PK +L EL++ SNQL
Sbjct: 444 VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 68/422 (16%), Positives = 138/422 (32%), Gaps = 65/422 (15%)
Query: 36 YHNKLTSL------SLQGLDLREATDWLQV----VITGLPSLRELDLSSSAPPKINYRSH 85
HN+L ++ SL+ LDL D+ + L L L LS++ K
Sbjct: 108 SHNRLQNISCCPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAA---KFRQLDL 163
Query: 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145
V S L L + L + ++++L N L + + +L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV---NAL 220
Query: 146 ASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLM--DLDLSKNQITGIPKSFGDMCCLK 203
L N C +T + + ++ ++ + + + F ++
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP-VE 279
Query: 204 TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRP 263
L I++ +T ++ +S A KSL ++N + S + +
Sbjct: 280 YLNIYNLTITERIDREEFTYS-ETALKSLMIEHVKNQVFLFSKEAL----------YSVF 328
Query: 264 SSLVELDLESNQLWLRFNHINGSATPKLCSSPM--LQVLDFSHNNISGM---VPTCLNNL 318
+ + L + +C L+F+ N + + L L
Sbjct: 329 AEMNIKMLSISDT---------PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379
Query: 319 SAMV--QNGSSNVIVEYRIQLIDDPEFDYQDRAL--LVWKPIDSIYKITLGLPKSIDLSD 374
++ +NG N + + + D +L L D + ++LS
Sbjct: 380 QTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSS 437
Query: 375 NNLSGKIPEEITSLL---------IGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQT 425
N L+G + + + I IP+ + L L +N+++N S+P
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL-----KSVPDGV 492
Query: 426 FE 427
F+
Sbjct: 493 FD 494
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 51/338 (15%), Positives = 100/338 (29%), Gaps = 40/338 (11%)
Query: 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
S+ + + S + + H + L LS N + ++ L L
Sbjct: 28 FSNELESMVDYS----NRNLTHVPKDLPPRTKALSLSQNSISELRMP-DISFLSELRVLR 82
Query: 150 -SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIH 208
S N I + + F L LD+S N++ I M L+ L +
Sbjct: 83 LSHNRIRSL-----------DFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLS 129
Query: 209 DNILTA-KLPELFLNFSAGCAKKSLQSFMLQNNML-SGSLPGVTELDGTFPKQFCRPSSL 266
N + + F N L L L V L + +
Sbjct: 130 FNDFDVLPVCKEFGNL------TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183
Query: 267 VELDLESNQ------LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
+ ES Q L L F+ + + S L L S+ ++ L +
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 321 MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380
+ G + + V + + +P++ + L + + ID + S
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCS-VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Query: 381 IPEEITSLLIGK------IPRSFSQLSHLGVVNLSNNN 412
+ + + +S + + + LS ++
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 25/160 (15%)
Query: 57 LQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLS---LCGLSNSAYHC 112
L + +P EL L+++ + + + L ++ S + + A+
Sbjct: 23 LNKIPEHIPQYTAELRLNNN---EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171
S + + L++N+L+ F+ + SL +L N IT +
Sbjct: 80 ASG----VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCV-----------GND 123
Query: 172 AFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDN 210
+F ++S+ L L NQIT + +F + L TL + N
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLN 222
T++ F + L ++ S N+IT I +F + + + N L ++F
Sbjct: 44 FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
SL++ ML++N ++ + + +F SS+ L L NQ+
Sbjct: 104 LE------SLKTLMLRSNRIT-CVG-----NDSFIGL----SSVRLLSLYDNQI 141
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 25/147 (17%)
Query: 177 TSLMDLDLSKNQITGIPKS--FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234
+L L+ N+ T + + F + L+ + +N +T F S +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------GVNE 85
Query: 235 FMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS 294
+L +N L ++ K F SL L L SN++ + + L
Sbjct: 86 ILLTSNRLE-NVQ---------HKMFKGLESLKTLMLRSNRIT----CVGNDSFIGL--- 128
Query: 295 PMLQVLDFSHNNISGMVPTCLNNLSAM 321
+++L N I+ + P + L ++
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSL 155
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 34/164 (20%)
Query: 57 LQVVITGLP-SLRELDLS----SSAPPKINYRSHSLVNSSSSSLTHLHLS---LCGLSNS 108
L + T LP ++ E+ L PP L + LS + L+
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIKVIPPGA---FSPYKK-----LRRIDLSNNQISELAPD 74
Query: 109 AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV 167
A+ L +SL L L N++ P F + SL L + N I +
Sbjct: 75 AFQGL----RSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCL---------- 119
Query: 168 RPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDN 210
AF ++ +L L L N++ I K +F + ++T+ + N
Sbjct: 120 -RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLN 222
I ++ P AFS L +DLS NQI+ + +F + L +L ++ N +T LF
Sbjct: 44 IKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
SLQ +L N ++ L F +L L L N+L
Sbjct: 103 LF------SLQLLLLNANKIN-CLR-----VDAFQDL----HNLNLLSLYDNKL 140
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 9e-09
Identities = 39/268 (14%), Positives = 84/268 (31%), Gaps = 72/268 (26%)
Query: 63 GLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSL 120
+ +L + ++ + +S+ + + + + + I ++
Sbjct: 22 AFAETIKDNLKK------KSVTDAVTQNELNSIDQIIANNSDIKS-----VQGIQYLPNV 70
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-------NYITGISKCSLPITLVRPKYAF 173
L L+ N+L ++ LA+L +L N + +S +
Sbjct: 71 TKLFLNGNKL---------TDIKPLANLKNLGWLFLDENKVKDLS-------------SL 108
Query: 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
++ L L L N I+ I + L++L + +N +T + + L
Sbjct: 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT--------DITVLSRLTKLD 159
Query: 234 SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293
+ L++N +S + + L + L L L N + S L
Sbjct: 160 TLSLEDNQIS-DIVPLAGL-----------TKLQNLYLSKNHI---------SDLRALAG 198
Query: 294 SPMLQVLDFSHNNISGMVPTCLNNLSAM 321
L VL+ +NL
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-08
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNV 176
++L L + N Q R + L +LT + + + AF
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----------APDAFHFT 79
Query: 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
L L+LS N + + L+ L + N
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 33/184 (17%)
Query: 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELD 71
+ L I + + + Y + + L++ + I+GL +L L
Sbjct: 43 MNSLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYN-----PISGLSNLERLR 94
Query: 72 LSSSAPPKINYRSHSLVNSSS-SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLS-NNQ 129
+ + S + N S +SLT L +S +S ++ + + +DLS N
Sbjct: 95 IMGK-----DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGA 148
Query: 130 LQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ 188
+ P + + L SL + + + L L
Sbjct: 149 ITDIMP---LKTLPELKSLNIQFDGVHDYR-------------GIEDFPKLNQLYAFSQT 192
Query: 189 ITGI 192
I G
Sbjct: 193 IGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 32/188 (17%)
Query: 59 VVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS- 117
+ + SL + L++ + + N + L ++ +N + IS
Sbjct: 38 ITEAQMNSLTYITLANINVTDLTGIEY-AHN-----IKDLTINNIHATN-----YNPISG 86
Query: 118 -KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNV 176
+L L + + N++ L SLT L+ IS + +++ + +
Sbjct: 87 LSNLERLRIMGKDVT----SDKIPNLSGLTSLTLLD----ISHSAHDDSILTK---INTL 135
Query: 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
+ +DLS N + LK+L I + + ++ L
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--------DYRGIEDFPKLNQLY 187
Query: 237 LQNNMLSG 244
+ + G
Sbjct: 188 AFSQTIGG 195
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 6e-08
Identities = 48/306 (15%), Positives = 88/306 (28%), Gaps = 47/306 (15%)
Query: 30 FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89
F + L+ +++ +L L + + +W PS L +A H+
Sbjct: 261 FSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRV 320
Query: 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ-GPTPDYAFRNMTSLASL 148
+ S + L + S + L +LS + + + + + L
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE 380
Query: 149 TSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLD---------LSKNQITGIPKSFGDM 199
+T I L+ K ++L +D L + +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440
Query: 200 CCLKTLKIHDNILTAKLPEL-FLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258
++ L + LT L L L + L +N L P + L
Sbjct: 441 ADVRVLHLAHKDLT-VLCHLEQL--------LLVTHLDLSHNRLRALPPALAAL------ 485
Query: 259 QFCRPSSLVELDLESNQ---------------LWLRFNHING-SATPKLCSSPMLQVLDF 302
L L N L L N + +A L S P L +L+
Sbjct: 486 -----RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
Query: 303 SHNNIS 308
N++
Sbjct: 541 QGNSLC 546
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 29/228 (12%)
Query: 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLR 68
H S +Q +++ + I V LS +KL +LSL+GL L +D + + +L
Sbjct: 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNSNLV 145
Query: 69 ELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGL--SNSAYHCLSHISKSLVYLDLS 126
L+LS + + + SS S L L+LS C ++H+S+++ L+LS
Sbjct: 146 RLNLSGC--SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203
Query: 127 --NNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDL 184
LQ R +L L L+ + F + L L L
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLKNDCF--------QEFFQLNYLQHLSL 254
Query: 185 SK-NQIT--GIPKSFGDMCCLKTLKIHDNI-------LTAKLPELFLN 222
S+ I + G++ LKTL++ + L LP L +N
Sbjct: 255 SRCYDIIPETL-LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN 301
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 54/298 (18%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
D + G + S + L + L+ + + + L+++ + + L
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVL 135
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130
LSS + + + ++ +L L L + + + H LSH +
Sbjct: 136 VLSSC--EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT--------- 184
Query: 131 QGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QI 189
SL SLN IS + ++ + + +L L L++ +
Sbjct: 185 ----------------SLVSLN----ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224
Query: 190 TGIPKSFGDMCCLKTLKIHD--NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
+ L+ L + + +GC K L+ + + LP
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC--KELRCLSGFWDAVPAYLP 282
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305
V C S L L+L + + LC P LQ L
Sbjct: 283 AVY--------SVC--SRLTTLNLSYATV------QSYDLVKLLCQCPKLQRLWVLDY 324
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 39 KLTSLSLQGLDLREATDW--------LQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90
+T L ++ + ++ LR L LS + + + +
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL----LTDKVFEYIGT 453
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS 150
+ + L ++ G S+ H + SL L++ + N + L ++ S
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF---GDKALLANASKLETMRS 510
Query: 151 LNYITGISKCSL 162
L +S CS+
Sbjct: 511 LW----MSSCSV 518
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 44 SLQGLDLRE-ATDW-LQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLS 101
+L+ L L L ++ P L EL L + S LS
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 102 LC-GLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYIT 155
+ + + L L+LS +Q L L L+YI
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172
I L L++N+L + D F + L L N +TGI A
Sbjct: 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----------EPNA 73
Query: 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F + + +L L +N+I I F + LKTL ++DN ++ +P F + S
Sbjct: 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL------NS 127
Query: 232 LQSFMLQNN 240
L S L +N
Sbjct: 128 LTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 25/136 (18%)
Query: 88 VNSSSSSLT-----------HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPD 136
V+ + L L L+ L + L LV L+L NQL G
Sbjct: 13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEP 71
Query: 137 YAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK- 194
AF + + L N I I F + L L+L NQI+ +
Sbjct: 72 NAFEGASHIQELQLGENKIKEI-----------SNKMFLGLHQLKTLNLYDNQISCVMPG 120
Query: 195 SFGDMCCLKTLKIHDN 210
SF + L +L + N
Sbjct: 121 SFEHLNSLTSLNLASN 136
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 56/217 (25%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNV 176
+ V +L + + ++ + + + I ++
Sbjct: 19 ANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA-------------GMQFF 62
Query: 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236
T+L +L LS NQI+ + D+ L+ L ++ N L L + L
Sbjct: 63 TNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLK-NLNGI--------PSACLSRLF 112
Query: 237 LQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ---------------LWLRFN 281
L NN L + L +L L + +N+ L L N
Sbjct: 113 LDNNELR-DTDSLIHL-----------KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160
Query: 282 HINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNL 318
I + T L + +D + L
Sbjct: 161 EI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 44/204 (21%)
Query: 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLREL 70
L +Q+ N + I+ + + L L L + + + + L L EL
Sbjct: 39 ELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQISDLSP-----LKDLTKLEEL 90
Query: 71 DLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNN 128
++ + ++ +L S+ L+ L L L + + K+L L + NN
Sbjct: 91 SVNRN---RLK----NLNGIPSACLSRLFLDNNELRD-----TDSLIHLKNLEILSIRNN 138
Query: 129 QLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN 187
+L+ ++ L L N IT + + + +DL+
Sbjct: 139 KLKSIVM---LGFLSKLEVLDLHGNEITNTG-------------GLTRLKKVNWIDLTGQ 182
Query: 188 QITGIPKSFGDMCCLKTLKIHDNI 211
+ P + L I + +
Sbjct: 183 KCVNEPVKY-----QPELYITNTV 201
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 44/173 (25%)
Query: 61 ITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--K 118
GL + + +L + + + L + + + + + L+ +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQKE-LSG-----VQNFNGDNSNIQS-----LAGMQFFT 63
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-------NYITGISKCSLP-------- 163
+L L LS+NQ+ +++ L LT L N + ++
Sbjct: 64 NLKELHLSHNQI---------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114
Query: 164 ---ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213
+ ++ +L L + N++ I G + L+ L +H N +T
Sbjct: 115 NNELRDTDS---LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 37/275 (13%), Positives = 75/275 (27%), Gaps = 31/275 (11%)
Query: 34 LSYHNKLTSLSLQGLDLREATD-WLQVVITGLPSLRELDLSSSAPPKINYRS-HSLVNSS 91
L + +L + W+ + L L+ + ++ L +
Sbjct: 80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM---IVSDLDLDRLAKAR 136
Query: 92 SSSLTHLHLSLC-GLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS 150
+ L L L C G + + + + L + + + SL
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196
Query: 151 LNYITGISKCSLP-ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD 209
LN I+ + N SL+ + + +I + F L+
Sbjct: 197 LN----FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVEL 269
+PE ++N L + N + P + + +L
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA--------------AQIRKL 298
Query: 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304
DL L + P L+VL+ +
Sbjct: 299 DLLYALL------ETEDHCTLIQKCPNLEVLETRN 327
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 35/283 (12%)
Query: 35 SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94
+ + L +L L TD L ++T ++ L + S+ + + + + ++S
Sbjct: 135 ARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193
Query: 95 LTHLHLSLCGLSNSAYHCLSHI---SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL 151
L L+ + + + L I +SLV + + + ++ F+ +L
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVGFFKAAANLEEFCGG 251
Query: 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD-N 210
+ I + LV P+ L L LS +P F ++ L +
Sbjct: 252 SLNEDIGMPEKYMNLVFPR-------KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304
Query: 211 ILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELD 270
+ T L +L+ +N + L + + C+ L L
Sbjct: 305 LETEDHCTLIQKC------PNLEVLETRNVIGDRGLEVLAQY--------CK--QLKRLR 348
Query: 271 LESNQLWLRFNHINGSATPK-----LCSSPMLQVLDFSHNNIS 308
+E G + + L+ + ++I+
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 24/215 (11%), Positives = 63/215 (29%), Gaps = 24/215 (11%)
Query: 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDW-LQVVITGLPSLRELDLS 73
++ +++ + + L L + D L+V+ L+ L +
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRLRIE 350
Query: 74 SSAPPKINYRSHSLVNSSS--------SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDL 125
A + LV+ L ++ + + ++N + + K+L L
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410
Query: 126 SN----NQLQGPTPDYAFRNM-TSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLM 180
++ D R++ L +T + Y ++
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFA----FYLRQGGLTDLGLSYIGQYSPNVR 466
Query: 181 DLDLSKNQIT--GIPKSFGDMCCLKTLKIHDNILT 213
+ L + G+ + L+ L++ +
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 14/133 (10%)
Query: 39 KLTSLSLQGLD-LREATDW-----LQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92
L L LD TD ++ ++ G LR + S + S
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR-QGGLTDLGLSYIGQYS 462
Query: 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLN 152
++ + L G S+ S +L L++ + +T L SL L
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLW 519
Query: 153 YITGISKCSLPIT 165
+ +T
Sbjct: 520 ----VQGYRASMT 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 64/464 (13%), Positives = 133/464 (28%), Gaps = 133/464 (28%)
Query: 10 ISLEDLQSINIGLNAI-RVRK-FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSL 67
+S E++ I + +A+ + F LS ++ ++ + LR +L + +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL------MSPI 98
Query: 68 RELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLS-----------LCGLSNSAYHCLSH- 115
+ S ++ + + + ++S L L + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DG 157
Query: 116 ---ISKS-LVYLDLSNNQLQGPTPDYAF--------RNMTSLASLTSLNYITGISKCSLP 163
K+ + + ++Q F T L L L Y + S
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 164 ITLVRPKYAFSNV--------------TSLMDLDLSKN-QITGIPKSFGDMCCLKTL--- 205
K ++ L+ L N Q +F ++ C K L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAF-NLSC-KILLTT 272
Query: 206 ---KIHDNILTAKLPELFLN-FSAGCAK-KSLQSFMLQNNMLSGSLPGVTELDGTFPKQF 260
++ D + A + L+ S + + + LP E+ T P++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRL 330
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA 320
S + E + W + H+N + ++ ++ + LN L
Sbjct: 331 ---SIIAESIRDGLATWDNWKHVN-------------------CDKLTTIIESSLNVLEP 368
Query: 321 MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380
EYR ++ + ++ P S
Sbjct: 369 ----------AEYR-KM-------FDRLSVF---------------PPSA---------H 386
Query: 381 IPEEITSLLIGKIPRSFSQ-----LSHLGVVNLSNNNFSGKIPS 419
IP + SL+ + +S L +V + IPS
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 9e-06
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 143/466 (30%)
Query: 34 LSYHNK-LTSLSLQG----LDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88
Y K + S+ D ++ D + +++ E+D + ++ + L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAVS-GTLRL- 67
Query: 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA-- 146
+ L + +V L+ +Y F M+ +
Sbjct: 68 ---------------------FWTLLSKQEEMVQ-KFVEEVLR---INYKFL-MSPIKTE 101
Query: 147 ----SLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCL 202
S+ + YI + + KY NV+ L + L
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVF-AKY---NVSRLQPYLKLRQ-------------AL 144
Query: 203 KTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF---PKQ 259
L+ N+ ++ G K + + + + + F K
Sbjct: 145 LELRPAKNV--------LIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLNLKN 191
Query: 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319
P +++E+ +L + P S D S N + ++++
Sbjct: 192 CNSPETVLEM---LQKLLYQI-------DPNWTSRS-----DHSSN-----IKLRIHSI- 230
Query: 320 AMVQNGSSNVIVE--YRIQLI--DD---PE----FDYQDRALLVWKPIDSIYKITLGLPK 368
Q ++ Y L+ + + F+ + LL + ++
Sbjct: 231 ---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 369 SIDLSDNNLSGKIPEEITSLL-------IGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
I L D++ P+E+ SLL +PR + +++ I SI
Sbjct: 288 HISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSI--------IAESI 337
Query: 422 PLQTFEASAYKNWTH-----------AYFQCLNNVEYK-LYAWIAV 455
+ + NW H + L EY+ ++ ++V
Sbjct: 338 RD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 37/168 (22%)
Query: 88 VNSSSSSLT-----------HLHL---SLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
V+ S L+L + L + L +L L L +NQL
Sbjct: 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLI----NLKELYLGSNQLGA- 78
Query: 134 TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192
P F ++T L L N +T LP + F + L +L + N++T +
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLT-----VLPSAV------FDRLVHLKELFMCCNKLTEL 127
Query: 193 PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
P+ + L L + N L + F SL L N
Sbjct: 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRL------SSLTHAYLFGN 169
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 51/327 (15%), Positives = 98/327 (29%), Gaps = 98/327 (29%)
Query: 47 GLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS----HSLVNSSSSSLTHLHLSL 102
L L ++ ++ + + LDLS + + S ++ +S+T L+LS
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLN---NLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 103 CGLSNSAYHCLS----HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA--------SLTS 150
L L I ++ L+LS N L ++ L ++T
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY-------KSSDELVKTLAAIPFTITV 113
Query: 151 L----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT--GIPKSFGDM----- 199
L N + S S+ L+L N + +
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLP------ASITSLNLRGNDLGIKSS-DELIQILAAIP 166
Query: 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAK---------KSLQSFMLQNNMLSGSLPGVT 250
+ +L + N L S CA+ S+ S L N+L
Sbjct: 167 ANVNSLNLRGNNLA----------SKNCAELAKFLASIPASVTSLDLSANLLGLK--SYA 214
Query: 251 ELDGTFPKQFCRPSSLVELDLESNQ---------------------LWLRFNHINGSATP 289
EL F P+ +V L+L N ++L ++ + + +
Sbjct: 215 ELAYIFSS---IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK-NMSK 270
Query: 290 K--------LCSSPMLQVLDFSHNNIS 308
+ + + ++D + I
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 56/352 (15%), Positives = 104/352 (29%), Gaps = 100/352 (28%)
Query: 90 SSSSSLTHLHLSLCGLSNSAYHCLS----HISKSLVYLDLSNNQLQGPTPDY---AFRNM 142
S +T L LSL L + + L + S+ L+LS N L D +
Sbjct: 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78
Query: 143 TSLASLTSL----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT--GIPKSF 196
+ ++TSL N+++ S L TL ++ LDL N + F
Sbjct: 79 PA--NVTSLNLSGNFLSYKSSDELVKTLAAIP------FTITVLDLGWNDFSSKSS-SEF 129
Query: 197 GDM-----CCLKTLKIHDNILTAK----LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247
+ +L + N L K L ++ ++ S L+ N L+
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI-----PANVNSLNLRGNNLASK-- 182
Query: 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS-----SPMLQVLDF 302
EL P+S+ LDL N + + +L + L+
Sbjct: 183 NCAELAKFLAS---IPASVTSLDL-------SANLLGLKSYAELAYIFSSIPNHVVSLNL 232
Query: 303 SHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI 362
N + L NL + +
Sbjct: 233 CLNCLH---GPSLENLKLLKDSLKHL---------------------------------- 255
Query: 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414
+++ L + + E+ +L +F + + +V+ +
Sbjct: 256 -----QTVYLDYDIVKNMSKEQCKALG-----AAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 60/313 (19%)
Query: 15 LQSINIGLNAIR---VRKFDQWLSYHN-KLTSLSLQGLDLRE--ATDWLQVVITGLPSLR 68
+ S+N+ N + + + L+ +T L L D ++++ Q S+
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 69 ELDLSSSAPPKINYRSHSLV----NSSSSSLTHLHLSLCGLSNSAY----HCLSHISKSL 120
L+L + + +S + + +++ L+L L++ L+ I S+
Sbjct: 142 SLNLRGN---DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLM 180
LDLS N L + LA + S S ++
Sbjct: 199 TSLDLSANLLGLKS-------YAELAYIFS-----------------------SIPNHVV 228
Query: 181 DLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNF-SAGCAKKSLQS 234
L+L N + G + + L+T+ + +I+ E +A + +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288
Query: 235 FMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS 294
+ S + + + L + L H +
Sbjct: 289 VDKNGKEIHPS--HSIPISNLIRELSGK---ADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343
Query: 295 PMLQVLDFSHNNI 307
L+ + +
Sbjct: 344 --LRESIQTCKPL 354
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 50/187 (26%)
Query: 88 VNSSSSSLT-----------HLHL---SLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133
V+ SL L L L LS++ + L+ L +L+L NQLQ
Sbjct: 19 VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK----LTWLNLDYNQLQT- 73
Query: 134 TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192
F ++T L +L + N + SLP+ + F ++T L L L NQ+ +
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLA-----SLPLGV------FDHLTQLDKLYLGGNQLKSL 122
Query: 193 PKS-FGDMCCLKTLKIHDNILTA----------KLPELFLNF--------SAGCAKKSLQ 233
P F + LK L+++ N L + L L L+ A LQ
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 234 SFMLQNN 240
+ L N
Sbjct: 183 TITLFGN 189
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 34/164 (20%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173
+ +L + T + LN I I + I V+
Sbjct: 15 DDAFAETIKANLKKKSV------------TDAVTQNELNSIDQIIANNSDIKSVQG---I 59
Query: 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
+ ++ L L N++ I + ++ L L + N L + +F + +L+
Sbjct: 60 QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT------NLK 112
Query: 234 SFMLQNNMLSGSLP-GVTELDGTFPKQFCRPSSLVELDLESNQL 276
+L N L SLP GV F + ++L L+L NQL
Sbjct: 113 ELVLVENQLQ-SLPDGV----------FDKLTNLTYLNLAHNQL 145
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 48/226 (21%)
Query: 57 LQVVITGLP-SLRELDLSS----SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYH 111
Q+ + +L A + S + +++S + S+ G+
Sbjct: 10 KQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIK----SVQGI------ 59
Query: 112 CLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKY 171
++ YL L N+L + A + +T+L L L + SLP
Sbjct: 60 ---QYLPNVRYLALGGNKLHDIS---ALKELTNLTYL-ILTG-NQLQ--SLPNG------ 103
Query: 172 AFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
F +T+L +L L +NQ+ +P F + L L + N L + +F +
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------ 157
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
+L L N L SLP +G F K + L +L L NQL
Sbjct: 158 NLTELDLSYNQLQ-SLP-----EGVFDKL----TQLKDLRLYQNQL 193
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 4e-05
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 12/130 (9%)
Query: 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPK-----INYRSHSLVNSS 91
L SL + + ++ + LP+L +L L +N
Sbjct: 192 RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250
Query: 92 SSSLTHLHLSLCGLSNSAYHCL--SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
+L L + N S I L +D+S L ++ + L
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 150 SL----NYIT 155
+ NY++
Sbjct: 311 FINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 8e-05
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 32/175 (18%)
Query: 44 SLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLC 103
L L ++ T+ L + P+L+ L++ S P ++ S +L L L +
Sbjct: 173 LLNNLKIKG-TNNLSIGKKPRPNLKSLEIISGGLPDSVVED--ILGSDLPNLEKLVLYVG 229
Query: 104 GLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLP 163
++ + +L L GI
Sbjct: 230 VEDYGFDGDMNVFRPLF--------------------SKDRFPNLKWL----GIVDAEEQ 265
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILT 213
+V + L +D+S +T + + LK + + N L+
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145
L N + +++ L L C ++ L+ +L +L L N L + + L
Sbjct: 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKL 73
Query: 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--KSFGDMCCL 202
L S N I G + +L L+LS N++ I + + CL
Sbjct: 74 KKLELSENRIFGGLDM-----------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122
Query: 203 KTLKIHDNILTAK 215
K+L + + +T
Sbjct: 123 KSLDLFNCEVTNL 135
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 19/185 (10%)
Query: 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI 61
+I E + + + + + + K D LS L+L ++ + + +
Sbjct: 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----L 66
Query: 62 TGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS--KS 119
+G+ +LR L L + KI +++ + +L L +S +++ LS I +
Sbjct: 67 SGMENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYNQIAS-----LSGIEKLVN 116
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTS 178
L L +SNN++ + L L + N + K + + R + +
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR-IEVVKRLPN 175
Query: 179 LMDLD 183
L LD
Sbjct: 176 LKKLD 180
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 42/241 (17%), Positives = 68/241 (28%), Gaps = 61/241 (25%)
Query: 66 SLRELDLSSSAPPKINYRSHSLV----NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLV 121
SLR+L+L+ ++ ++V S +L ++L+ C L + L +
Sbjct: 73 SLRQLNLAGV---RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129
Query: 122 YLDLSNNQLQGPTPDYAFRNMTSLAS--------LTSL----NYITGISKCSLPITLVRP 169
L L N L L +T+L N +T L L
Sbjct: 130 KLGLQLNSLGP-------EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA-- 180
Query: 170 KYAFSNVTSLMDLDLSKNQIT--GIPKSFGDM----CCLKTLKIHDNILTAKLPELFLNF 223
N TS+ L L + G+ + L+ L + N
Sbjct: 181 ----GN-TSVTHLSLLHTGLGDEGL-ELLAAQLDRNRQLQELNVAYNGAG---------- 224
Query: 224 SAGC--------AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275
SL+ L N LS G L + +V E
Sbjct: 225 DTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLG-GAAEGGARVVVSLTEGTA 281
Query: 276 L 276
+
Sbjct: 282 V 282
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 24 AIRVRKFDQWLSYHNKL-----TSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSA 76
+R +W +N L +Q +D ++ + GL + ++ L
Sbjct: 37 MVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC- 95
Query: 77 PPKIN---YRSHSLVNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSN 127
I S + + S+ + + CG +++ L H L YL LS+
Sbjct: 96 -HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN-LKYLFLSD 148
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
L L NQ T +PK + L + + +N ++ + F N + L + +L N
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT------QLLTLILSYNR 89
Query: 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
L +P TF SL L L N +
Sbjct: 90 LR-CIP-----PRTFDGL----KSLRLLSLHGNDI 114
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFS 174
I + + L L NQ N L + S N I+ + +FS
Sbjct: 29 IPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTL-----------SNQSFS 75
Query: 175 NVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKSL 232
N+T L+ L LS N++ IP +F + L+ L +H N ++ +PE F + +L
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDL------SAL 128
Query: 233 QSFMLQNN 240
+ N
Sbjct: 129 SHLAIGAN 136
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.98 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.87 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.82 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.82 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.77 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.69 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.52 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.52 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.51 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.49 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.49 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.44 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.38 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.3 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.29 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.27 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.1 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.09 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.98 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.75 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.69 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.61 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.61 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.6 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.55 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.42 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.33 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.2 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.01 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.86 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.66 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.09 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.92 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=367.22 Aligned_cols=354 Identities=27% Similarity=0.354 Sum_probs=245.1
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc--
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN-- 89 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-- 89 (466)
+++|++|++++|.+++..| ..+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++..+ ..+..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~ 367 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGEL--PMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLS 367 (768)
T ss_dssp CTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEEC--CHHHHTTCTTCCEEECCSSEEEECCC--TTHHHHT
T ss_pred cCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcC--CHHHHhcCCCCCEEeCcCCccCcccc--HHHHhhh
Confidence 3777777777777766666 66777777777777777665321 33322336777777777776653333 22332
Q ss_pred -----------------------CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 90 -----------------------SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 90 -----------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
..+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+..|. .++.+++|+
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 445 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPS-SLGSLSKLR 445 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCG-GGGGCTTCC
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccH-HHhcCCCCC
Confidence 113345555555555555555555555 5666666666666555555 555666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
.|+ +.|.+++. +| ..+..+++|++|++++|.+++ +|..+.++++|++|++++|++++.+|..+..+
T Consensus 446 ~L~L~~n~l~~~----~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l- 513 (768)
T 3rgz_A 446 DLKLWLNMLEGE----IP-------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 513 (768)
T ss_dssp EEECCSSCCCSC----CC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-
T ss_pred EEECCCCcccCc----CC-------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-
Confidence 666 55555544 44 555666666666666666665 56666666666666666666666666655544
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeee---------------------------
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW--------------------------- 277 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~--------------------------- 277 (466)
++|++|++++|+++| .+|..+..+++|++|++++|.+.
T Consensus 514 -----~~L~~L~L~~N~l~~----------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 514 -----ENLAILKLSNNSFSG----------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp -----TTCCEEECCSSCCEE----------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred -----CCCCEEECCCCcccC----------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 456666666666663 55677888899999999988762
Q ss_pred ------------------------------------eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 278 ------------------------------------LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 278 ------------------------------------l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
++.+.+.|.+|..+..+++|++|||++|+++|.+|..|++++.|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 01145556677788889999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS 401 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~ 401 (466)
+.|+++++.. .+..+..++.++.|+.|||++|+++| .+|.++..++
T Consensus 659 ~~L~Ls~N~l----------------------~g~ip~~l~~L~~L~~LdLs~N~l~g------------~ip~~l~~l~ 704 (768)
T 3rgz_A 659 FILNLGHNDI----------------------SGSIPDEVGDLRGLNILDLSSNKLDG------------RIPQAMSALT 704 (768)
T ss_dssp CEEECCSSCC----------------------CSCCCGGGGGCTTCCEEECCSSCCEE------------CCCGGGGGCC
T ss_pred CEEeCcCCcc----------------------CCCCChHHhCCCCCCEEECCCCcccC------------cCChHHhCCC
Confidence 9998655533 34556677889999999999999997 5566789999
Q ss_pred CCCeeeccCCcCcccCCCCCCccccccccccc
Q 047429 402 HLGVVNLSNNNFSGKIPSSIPLQTFEASAYKN 433 (466)
Q Consensus 402 ~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~ 433 (466)
+|++||+++|+++|.||+..++.++...+|..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp CCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred CCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 99999999999999999999999998888754
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=361.50 Aligned_cols=384 Identities=25% Similarity=0.305 Sum_probs=217.8
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc-----
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS----- 84 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 84 (466)
.++++|++|++++|.+.+..+ . +..+++|++|++++|.+++.. +..+.. +++|++|++++|.+++..+..
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDF--SRAIST-CTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCH--HHHTTT-CSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcc--cHHHhc-CCCCCEEECCCCcccCccCccccCCC
Confidence 455566666666666555443 2 555566666666666555431 333333 555555555555554322210
Q ss_pred ---------------cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 85 ---------------HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 85 ---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
..+.. .+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.+|...+..+++|++|+
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp CEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 11211 02556666666666655555566665 66666666666665555552356666666666
Q ss_pred -cccccccccccCCCcccc------------------CccccccC--CCccCEEecCCCcCCC-CCcccCCCCCcCEEEe
Q 047429 150 -SLNYITGISKCSLPITLV------------------RPKYAFSN--VTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKI 207 (466)
Q Consensus 150 -~~n~l~~~~~~~l~~~~~------------------~~~~~l~~--l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L 207 (466)
+.|.+++. +|..+. ..+..+.. +++|++|++++|.+++ +|..+.++++|++|++
T Consensus 350 Ls~n~l~~~----~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 350 LSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CCSSEEEEC----CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CcCCccCcc----ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 66655533 331000 00011111 3344444444444443 4444455555555555
Q ss_pred eCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-----------
Q 047429 208 HDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------- 276 (466)
Q Consensus 208 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------- 276 (466)
++|.+++..|..+..+ ++|+.|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 426 s~N~l~~~~p~~l~~l------~~L~~L~L~~n~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSL------SKLRDLKLWLNMLEG----------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CSSEEESCCCGGGGGC------TTCCEEECCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCCcccCcccHHHhcC------CCCCEEECCCCcccC----------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 5555554444444333 345555555555543 3344444455555555555443
Q ss_pred ------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceee--eeeeccCCCCc---cc
Q 047429 277 ------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE--YRIQLIDDPEF---DY 345 (466)
Q Consensus 277 ------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~--~~~~~~~~~~~---~~ 345 (466)
++++|++++.+|.+++.+++|++|+|++|++++.+|..++++++|+.|+++++... .+..+...... ..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 24446666777777777777888888877777777777777777777774443221 11111110000 00
Q ss_pred -------------------------------------------ccceeeeeecccchhhhccCCCcEEECCCCcCCcCCc
Q 047429 346 -------------------------------------------QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP 382 (466)
Q Consensus 346 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip 382 (466)
.......+.+..+..++.++.|+.|||++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 0000122333344456678899999999999999999
Q ss_pred HHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 383 EEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 383 ~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..++.+ +.|.+|.+|+++++|++|||++|+++|.+|+.
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999876 88999999999999999999999999999976
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=330.76 Aligned_cols=419 Identities=20% Similarity=0.207 Sum_probs=263.5
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|+++++|++|++++|.+.+..+ ..|.++++|++|+|++|.++... +..+.. +++|++|++++|.++...+ .
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~i~~l~~--~ 123 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMA--ETALSG-PKALKHLFFIQTGISSIDF--I 123 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEEC--TTTTSS-CTTCCEEECTTSCCSCGGG--S
T ss_pred hhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccC--hhhhcc-cccccEeeccccCcccCCc--c
Confidence 4577888888888888888887767 77888888888888888887663 333444 8888888888888887655 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc--ccc-cccccccccccCC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA--SLT-SLNYITGISKCSL 162 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.+++.....+..+ ++|++|++++|.+.+..+. .++.+++|+ .|+ +.|.+++......
T Consensus 124 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 124 PLHN--QKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp CCTT--CTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred hhcc--CCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChh-hhhhhcccceeEEecCCCccCccChhHh
Confidence 5666 8888888888888876544444456 8888888888888766565 777787777 666 6666554321110
Q ss_pred Cc-----------------------------------------------------cc-----------cCccccccCCCc
Q 047429 163 PI-----------------------------------------------------TL-----------VRPKYAFSNVTS 178 (466)
Q Consensus 163 ~~-----------------------------------------------------~~-----------~~~~~~l~~l~~ 178 (466)
.. .+ ...+..|..+++
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 00 00 011234778889
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC-----c---
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV-----T--- 250 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~--- 250 (466)
|++|++++|.++.+|..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.++.. .
T Consensus 280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF------PSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC------TTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc------CcCCEEECCCCCcccccchhhhhccCcCC
Confidence 999999999999998889999999999999999987777655554 46777777777665443321 0
Q ss_pred -------cccccc--CcccCCCCCCcEEeCCCCee-----------------eeecccccccCCC-CCCCCCCccEEEcc
Q 047429 251 -------ELDGTF--PKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATP-KLCSSPMLQVLDFS 303 (466)
Q Consensus 251 -------~l~~~l--p~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~-~~~~l~~L~~L~Ls 303 (466)
.+.+.. |..+..+++|++|++++|.+ ++++|.+.+..+. .+..+++|++|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 111111 44455666666666666543 2444555544433 35666666666666
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCce-eeeeee----ccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQ----LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+|.+++..|..|+++++|+.|+++++. .+.... +.....+.......+.+.+..+..+..++.|++|+|++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 666666666666666666666643332 111000 000001111111111122233334445555555555555555
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
+ ..|.++.+++.| +|++++|++++.+|+. +..+......+...++|.|.|...+ +..|++.+
T Consensus 514 ~------------~~~~~l~~l~~L-~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c~~~~-~~~w~~~~ 575 (606)
T 3t6q_A 514 S------------SSIEALSHLKGI-YLNLASNHISIILPSL--LPILSQQRTINLRQNPLDCTCSNIY-FLEWYKEN 575 (606)
T ss_dssp G------------GGGGGGTTCCSC-EEECCSSCCCCCCGGG--HHHHHTSSEEECTTCCEECSGGGHH-HHHHHHHC
T ss_pred c------------CChhHhCccccc-EEECcCCcccccCHhh--cccCCCCCEEeCCCCCccccCCcHH-HHHHHHhC
Confidence 3 446667888888 8888888888555543 2233444556677788888887654 66777653
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=326.03 Aligned_cols=362 Identities=18% Similarity=0.253 Sum_probs=268.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCC-----------------------------------------
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLR----------------------------------------- 51 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------- 51 (466)
.+++.|+|+++.+.+..| ..+..+++|++|+|++|.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 578899999999988888 78899999999999988540
Q ss_pred ----------------------------------CccchHHHHhcCCCCCCEEEcCCCCCCCC-----------------
Q 047429 52 ----------------------------------EATDWLQVVITGLPSLRELDLSSSAPPKI----------------- 80 (466)
Q Consensus 52 ----------------------------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------- 80 (466)
.+..+|..+.. +++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhc-ccCCCEEECcCCccccccccccccccccchhccc
Confidence 01112455666 88999999999988872
Q ss_pred Cccccccc--cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc-ccc-CCChhhhhcC------Ccccccc-
Q 047429 81 NYRSHSLV--NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ-LQG-PTPDYAFRNM------TSLASLT- 149 (466)
Q Consensus 81 ~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~-l~~-~~~~~~~~~l------~~L~~L~- 149 (466)
.| ..+. . +++|++|++++|.+.+..|..+.++ ++|++|++++|. +++ .+|. .++.+ ++|+.|+
T Consensus 239 ip--~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 239 KT--EDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TT--SCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred Cc--hhhhhcc--cCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 23 3555 6 8889999999998888888888888 889999999998 877 6777 77766 8888888
Q ss_pred cccccccccccCCCccccCccc--cccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhcccc
Q 047429 150 SLNYITGISKCSLPITLVRPKY--AFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAG 226 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 226 (466)
+.|.++. +| . .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 313 ~~n~l~~-----ip-------~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--- 375 (636)
T 4eco_A 313 GYNNLKT-----FP-------VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF--- 375 (636)
T ss_dssp CSSCCSS-----CC-------CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE---
T ss_pred CCCcCCc-----cC-------chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh---
Confidence 8888873 56 5 68888889999999998884 88 7888888999999998887 566555544
Q ss_pred ccccc-cceEecCCccccccCCCCcccccccCcccCCCC--CCcEEeCCCCeeeeecccccccCCCCCC-------CCCC
Q 047429 227 CAKKS-LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS--SLVELDLESNQLWLRFNHINGSATPKLC-------SSPM 296 (466)
Q Consensus 227 ~~~~~-L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~--~L~~L~L~~n~l~l~~n~~~~~~~~~~~-------~l~~ 296 (466)
++ |++|++++|.++ .+|..+..++ +|++|++++ |.+++..|..+. .+++
T Consensus 376 ---~~~L~~L~Ls~N~l~-----------~lp~~~~~~~l~~L~~L~Ls~-------N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 376 ---TEQVENLSFAHNKLK-----------YIPNIFDAKSVSVMSAIDFSY-------NEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ---CTTCCEEECCSSCCS-----------SCCSCCCTTCSSCEEEEECCS-------SCTTTTTTCSSCTTCSSCCCCCC
T ss_pred ---cccCcEEEccCCcCc-----------ccchhhhhcccCccCEEECcC-------CcCCCcchhhhcccccccccCCC
Confidence 56 888999999888 5666666554 788888888 455677777777 7778
Q ss_pred ccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeeeccCCC--------Ccccccceeeeeecccchhh-hccCC
Q 047429 297 LQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQLIDDP--------EFDYQDRALLVWKPIDSIYK-ITLGL 366 (466)
Q Consensus 297 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~ 366 (466)
|++|++++|.+++..+..+..+++|+.|+++++. ...+....... .+.......+.+..++.... ..+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 8999999998886555566678888888855443 32211111110 11111111122223333222 37899
Q ss_pred CcEEECCCCcCCcCCcHHHHhh------------------ccCCCcccccCCCCCCeeeccCCcCcccCCCCCC
Q 047429 367 PKSIDLSDNNLSGKIPEEITSL------------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422 (466)
Q Consensus 367 L~~L~Ls~N~l~~~ip~~i~~l------------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 422 (466)
|+.|+|++|++++ +|..++.+ +.+.+|.++.++++|++|+|++|++ +.+|....
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 9999999999996 88887764 2678999999999999999999999 58998743
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=305.93 Aligned_cols=378 Identities=20% Similarity=0.229 Sum_probs=250.3
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|+|++|.+++..+ ..|.++++|++|++++|.+.... +...+.++++|++|++++|.++...+ ..+.. +
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~--l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFLQLET--GAFNG--L 102 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEECTTCTTCEECT--TTTTT--C
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceE--CcccccccccCCEEeCCCCccCccCh--hhccC--c
Confidence 689999999999998877 88999999999999999986432 23334449999999999999988766 57777 9
Q ss_pred CCccEEEcCCCCCCchhhhh--hhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHC--LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~--l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..|...+.++++|++|+ +.|.+++. .+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~------ 171 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI----CE------ 171 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC----CT------
T ss_pred ccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc----Ch------
Confidence 99999999999999765554 8888 99999999999999877763489999999999 99999886 44
Q ss_pred cccccCC--CccCEEecCCCcCCCCCcc---------cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecC
Q 047429 170 KYAFSNV--TSLMDLDLSKNQITGIPKS---------FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238 (466)
Q Consensus 170 ~~~l~~l--~~L~~L~Ls~n~l~~~~~~---------l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 238 (466)
..+..+ .+|+.|++++|.+..++.. +..+++|++|++++|.+++..|..+.....+ .+|+.|+++
T Consensus 172 -~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~---~~L~~L~l~ 247 (455)
T 3v47_A 172 -EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG---TKIQSLILS 247 (455)
T ss_dssp -TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT---CCEEEEECT
T ss_pred -hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc---cceeeEeec
Confidence 344444 6899999999999885432 3466899999999999988777766554221 356777777
Q ss_pred CccccccCCCCcccccccCcccCC--CCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhh
Q 047429 239 NNMLSGSLPGVTELDGTFPKQFCR--PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 239 ~n~l~~~~~~~~~l~~~lp~~~~~--l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+|...+.......+.+..+..+.. .++|++|++++| .+.+..|..++.+++|++|++++|.+++..|..|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-------KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCc-------cccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 665543322211111111111221 245666666663 33445555666666666666666666666666666
Q ss_pred hhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCccc
Q 047429 317 NLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS 396 (466)
Q Consensus 317 ~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~ 396 (466)
++++|+.|+++++.. ....+..+..+++|++|+|++|++++ ..|.+
T Consensus 321 ~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~ 366 (455)
T 3v47_A 321 GLTHLLKLNLSQNFL----------------------GSIDSRMFENLDKLEVLDLSYNHIRA------------LGDQS 366 (455)
T ss_dssp TCTTCCEEECCSSCC----------------------CEECGGGGTTCTTCCEEECCSSCCCE------------ECTTT
T ss_pred CcccCCEEECCCCcc----------------------CCcChhHhcCcccCCEEECCCCcccc------------cChhh
Confidence 666666666433321 11222233445566666666666653 22334
Q ss_pred ccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHH
Q 047429 397 FSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAV 455 (466)
Q Consensus 397 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (466)
|.++++|++|++++|++++ +|... +..+......+...+++.|.+.....+..|+..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~-~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKS-VPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp TTTCTTCCEEECCSSCCSC-CCTTT-TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccccEEECCCCcccc-CCHhH-hccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 5556666666666666653 33321 122333334444445555555544445555543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=320.14 Aligned_cols=411 Identities=19% Similarity=0.137 Sum_probs=232.3
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++... +..+.. +++|++|++++|.++..++ ..
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~~--~~ 123 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFS--PGSFSG-LTSLENLVAVETKLASLES--FP 123 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCC--TTSSTT-CTTCCEEECTTSCCCCSSS--SC
T ss_pred hhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccC--hhhcCC-cccCCEEEccCCccccccc--cc
Confidence 356667777777777777766655 56677777777777777766652 333333 7777777777777766655 34
Q ss_pred cccCCCCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc----ccc-ccccccccccc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA----SLT-SLNYITGISKC 160 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~----~L~-~~n~l~~~~~~ 160 (466)
+.. +++|++|++++|.+++ ..|..+.++ ++|++|++++|.+++..+. .++.+.+|+ .|+ +.|.++.....
T Consensus 124 ~~~--l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 124 IGQ--LITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp CTT--CTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cCC--CCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChh-hhhhhhccccccceeeccCCCcceeCcc
Confidence 555 6777777777777664 346666666 7777777777776655444 444444332 333 33333322100
Q ss_pred CCCc---------------------------------------------------------------------c-ccCcc
Q 047429 161 SLPI---------------------------------------------------------------------T-LVRPK 170 (466)
Q Consensus 161 ~l~~---------------------------------------------------------------------~-~~~~~ 170 (466)
.... . ....+
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 0000 0 00000
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhh--------------hhccccccccccceEe
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELF--------------LNFSAGCAKKSLQSFM 236 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--------------~~~~~~~~~~~L~~L~ 236 (466)
.+..+++|+.|++++|.+..+| .+..+++|++|++++|.+. .+|... .........++|+.|+
T Consensus 280 -~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 280 -KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp -SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred -ccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 1334455555555555555554 4555555666666665552 333210 0000001124688888
Q ss_pred cCCccccccC--CC-------Cc-------ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCC-CCCCCCCCccE
Q 047429 237 LQNNMLSGSL--PG-------VT-------ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT-PKLCSSPMLQV 299 (466)
Q Consensus 237 L~~n~l~~~~--~~-------~~-------~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~-~~~~~l~~L~~ 299 (466)
+++|.+++.. +. .. .+ ..+|..+..+++|++|++++ |.+.+..+ ..+..+++|++
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQH-------STLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTT-------SEEESTTTTTTTTTCTTCCE
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCC-------CccCCccChhhhhccccCCE
Confidence 8888776431 10 00 00 02334455555555555555 44455555 56778888888
Q ss_pred EEccCCCCCCCchhhhhhhhhhhhcCCCCceeee---eeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCc
Q 047429 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEY---RIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNN 376 (466)
Q Consensus 300 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 376 (466)
|++++|.+++..|..|.++++|+.|+++++.... +..+.....+.......+.+.+..+..+..+++|++|+|++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 8888888888788888888888888855543221 1111111111111111122233344445566777777777777
Q ss_pred CCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccc-cccccchhHHHHHHhhhhhhhhHHHHH
Q 047429 377 LSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE-ASAYKNWTHAYFQCLNNVEYKLYAWIA 454 (466)
Q Consensus 377 l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (466)
+++ .+|.+|.++++|++|++++|+++ .+|.. +..+. ...+.+...++|.|.|...+ +..|+.
T Consensus 509 l~~------------~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~~L~~l~l~~N~~~c~c~~~~-~~~~l~ 571 (606)
T 3vq2_A 509 LLF------------LDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPKSLAFFNLTNNSVACICEHQK-FLQWVK 571 (606)
T ss_dssp CSC------------EEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCTTCCEEECCSCCCCCSSTTHH-HHTTTT
T ss_pred CCC------------cCHHHccCCCcCCEEECCCCcCc-ccCHh--HhhhcccCcEEEccCCCcccCCccHH-HHHHHH
Confidence 763 44667899999999999999998 78876 34443 34556666777777777643 555653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=316.92 Aligned_cols=203 Identities=25% Similarity=0.254 Sum_probs=132.9
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|++++|.+++..+ ..+.++++|++|+|++|.++.+ +...+..+++|++|++++|.+++.++ .
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~~~~--~ 115 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLTELHLMSNSIQKIKN--N 115 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCS--C
T ss_pred HHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCcc---ChhhhccCCCCCEEECCCCccCccCh--h
Confidence 3457777888888888888877666 7777888888888888887776 33333337888888888888777665 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhh--cCCcccccc-cccccccccccCC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR--NMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+. .+. .+++|+.|+ +.|.+++.....+
T Consensus 116 ~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 116 PFVK--QKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp TTTT--CTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred Hccc--cCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhh
Confidence 5666 7788888888888777767777777 7788888888777755444 443 346677777 6666654321100
Q ss_pred Cc-----------------------------cc-----------cCccccccCCCc--cCEEecCCCcCCC-CCcccCCC
Q 047429 163 PI-----------------------------TL-----------VRPKYAFSNVTS--LMDLDLSKNQITG-IPKSFGDM 199 (466)
Q Consensus 163 ~~-----------------------------~~-----------~~~~~~l~~l~~--L~~L~Ls~n~l~~-~~~~l~~l 199 (466)
.. .+ ...+..+..++. |++|++++|.+++ .|..+..+
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 271 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc
Confidence 00 00 001123334433 7777777777776 34567777
Q ss_pred CCcCEEEeeCCcCCCccch
Q 047429 200 CCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~ 218 (466)
++|++|++++|.+++..+.
T Consensus 272 ~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp TTCCEEECCSCCBSEECTT
T ss_pred ccccEeeCCCCccCccChh
Confidence 7777777777777655544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=309.70 Aligned_cols=396 Identities=18% Similarity=0.145 Sum_probs=250.2
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+|.++++|++|++++|.+++..+ ..|.++++|++|++++|.++... +..+.. +++|++|++++|.++..++ ..
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~--~~ 119 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLA--LGAFSG-LSSLQKLVAVETNLASLEN--FP 119 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTSCCCCSTT--CS
T ss_pred hHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccC--HhhhcC-ccccccccccccccccCCC--cc
Confidence 456777777788887777776655 66777777888888777776662 223333 7778888887777777655 34
Q ss_pred cccCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc----cccc-ccccccccccc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL----ASLT-SLNYITGISKC 160 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~-~~n~l~~~~~~ 160 (466)
+.. +++|++|++++|.+++. .|..+.++ ++|++|++++|.+.+..+. .++.+.+| +.|+ +.|.++.....
T Consensus 120 ~~~--l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 120 IGH--LKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp CTT--CTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ccc--cccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHH-HccchhccchhhhhcccCCCCceecCHH
Confidence 566 77788888888877653 46777777 7788888888877755554 56666555 4555 55544432110
Q ss_pred CCC----------------------------------------------------------------------ccccCcc
Q 047429 161 SLP----------------------------------------------------------------------ITLVRPK 170 (466)
Q Consensus 161 ~l~----------------------------------------------------------------------~~~~~~~ 170 (466)
.+. ......+
T Consensus 196 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred HhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 000 0001122
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc-------------cccccccccceEec
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF-------------SAGCAKKSLQSFML 237 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-------------~~~~~~~~L~~L~L 237 (466)
..+..+++|++|++++|.++.+|..+..+ +|++|++++|.+.......+..+ +.....++|++|++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 44666788999999999888888877777 88888888887763332211100 00012256888888
Q ss_pred CCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------------eeecccccccCC-CCCCCCCCccEE
Q 047429 238 QNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------WLRFNHINGSAT-PKLCSSPMLQVL 300 (466)
Q Consensus 238 ~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------~l~~n~~~~~~~-~~~~~l~~L~~L 300 (466)
++|.+++.. ..|..+..+++|++|++++|.+ ++++|.+.+..+ ..+..+++|++|
T Consensus 355 ~~n~l~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 355 SRNGLSFKG--------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CSSCCBEEE--------EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred cCCccCccc--------cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 888887331 1133455555666666665543 233344444444 456777778888
Q ss_pred EccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcC
Q 047429 301 DFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380 (466)
Q Consensus 301 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 380 (466)
++++|.+.+..|..|.++++|+.|+++++... .+..+..+..+++|++|++++|++++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~p~~~~~l~~L~~L~l~~n~l~~- 484 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------ENFLPDIFTELRNLTFLDLSQCQLEQ- 484 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------------------GGEECSCCTTCTTCCEEECTTSCCCE-
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCc---------------------cccchhhhhcccCCCEEECCCCcccc-
Confidence 88888877777777777777777775544321 01122334567888999999998884
Q ss_pred CcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 381 ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
..|.+|..+++|++|++++|++++..|... ..+......+...+++.|.+.....+..|+...
T Consensus 485 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 485 -----------LSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547 (570)
T ss_dssp -----------ECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred -----------CChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence 335567888899999999999886555432 333444445555666777766655455676553
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=307.54 Aligned_cols=370 Identities=21% Similarity=0.184 Sum_probs=254.8
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+.+++|++++|.+++..+ ..|.++++|++|+|++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~--~~~~~--l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIH--EDTFQS-QHRLDTLVLTANPLIFMAE--TALSG--P 104 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTCCCSEECT--TTTSS--C
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeC--hhhccC-ccccCeeeCCCCcccccCh--hhhcc--c
Confidence 479999999999998877 88999999999999999998773 444555 9999999999999998777 57778 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.... .+..+++|+.|+ +.|.+++. .+ .
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~-------~ 171 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYL----SK-------E 171 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEE----CH-------H
T ss_pred ccccEeeccccCcccCCcchhccC-CcccEEECCCCcccccCcc-cccCCcccCEEEcccCccccc----Ch-------h
Confidence 999999999999998878889999 9999999999999874434 555699999999 99998875 33 5
Q ss_pred cccCCCccC--EEecCCCcCCCCCcccCCCC-------------------------------------------------
Q 047429 172 AFSNVTSLM--DLDLSKNQITGIPKSFGDMC------------------------------------------------- 200 (466)
Q Consensus 172 ~l~~l~~L~--~L~Ls~n~l~~~~~~l~~l~------------------------------------------------- 200 (466)
.+..+++|+ .|++++|.+.+++.......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 677778888 78888888777332222222
Q ss_pred ---CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-
Q 047429 201 ---CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL- 276 (466)
Q Consensus 201 ---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l- 276 (466)
+|+.|++++|.+++..+..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~lp~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCF------SGLQELDLTATHLS-----------ELPSGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTC------TTCSEEECTTSCCS-----------CCCSSCCSCTTCCEEECTTCCCS
T ss_pred hcCceeEEEeecCccCccCHHHhccc------cCCCEEeccCCccC-----------CCChhhcccccCCEEECccCCcC
Confidence 45555566666655555444443 45777777777666 5566666677777777777654
Q ss_pred ----------------eeecccccccCCC-CCCCCCCccEEEccCCCCCCCc--hhhhhhhhhhhhcCCCCc-eeeeeee
Q 047429 277 ----------------WLRFNHINGSATP-KLCSSPMLQVLDFSHNNISGMV--PTCLNNLSAMVQNGSSNV-IVEYRIQ 336 (466)
Q Consensus 277 ----------------~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~l~~~n~-~~~~~~~ 336 (466)
++++|.+.+.++. .+..+++|++|++++|.+++.. +..+.++++|+.|+++++ +......
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 2444555545544 3677777777777777777655 667777777777775443 3322111
Q ss_pred ccC-CCCcccccceeeeeeccc-chhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccC---CCcccccC
Q 047429 337 LID-DPEFDYQDRALLVWKPID-SIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIG---KIPRSFSQ 399 (466)
Q Consensus 337 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~---~ip~~l~~ 399 (466)
... .+.+.............. ...+..+++|++|++++|.+.+..|..++.+ +.+ ..+..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 111 111111111111222222 2235667788888888888876656555433 222 12345778
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|++|++++|.+++..|..
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTT
T ss_pred CCCccEEECCCCccCccChhh
Confidence 888888888888888666654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=310.10 Aligned_cols=334 Identities=16% Similarity=0.187 Sum_probs=220.3
Q ss_pred chHHHhhcCCCCcEEEccCCCCCC------------------ccchHHHHh--cCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 29 KFDQWLSYHNKLTSLSLQGLDLRE------------------ATDWLQVVI--TGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 29 ~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
.| ..+.++++|++|+|++|.+++ + |..+. . +++|++|+|++|.+.+..| ..+.
T Consensus 440 IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i---P~~l~f~~-L~~L~~L~Ls~N~l~~~iP--~~l~ 512 (876)
T 4ecn_A 440 IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE---NEELSWSN-LKDLTDVELYNCPNMTQLP--DFLY 512 (876)
T ss_dssp EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGG-CTTCCEEEEESCTTCCSCC--GGGG
T ss_pred hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC---Chhhhhcc-CCCCCEEECcCCCCCccCh--HHHh
Confidence 44 678889999999999999988 4 55554 5 9999999999998877776 6788
Q ss_pred cCCCCCccEEEcCCCC-CCc-hhhhhhhcccC-------CCcEEEccCCccccCCCh-hhhhcCCcccccc-cccccccc
Q 047429 89 NSSSSSLTHLHLSLCG-LSN-SAYHCLSHISK-------SLVYLDLSNNQLQGPTPD-YAFRNMTSLASLT-SLNYITGI 157 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~-------~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~-~~n~l~~~ 157 (466)
. +++|++|++++|+ +++ .+|..+..+ + +|++|++++|.+. .+|. ..++++++|+.|+ +.|.++.
T Consensus 513 ~--L~~L~~L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~- 587 (876)
T 4ecn_A 513 D--LPELQSLNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH- 587 (876)
T ss_dssp G--CSSCCEEECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred C--CCCCCEEECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-
Confidence 8 9999999999998 887 788777766 5 8999999999998 5554 3688999999999 8888874
Q ss_pred cccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCC-cCEEEeeCCcCCCccchhhhhccccccccccceEe
Q 047429 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC-LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236 (466)
Q Consensus 158 ~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (466)
+| .+..+++|+.|++++|.++.+|..+..+++ |++|++++|.++ .+|..+... ..++|+.|+
T Consensus 588 ----lp--------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~----~~~~L~~L~ 650 (876)
T 4ecn_A 588 ----LE--------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK----SVYVMGSVD 650 (876)
T ss_dssp ----CC--------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT----CSSCEEEEE
T ss_pred ----ch--------hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhcc----ccCCCCEEE
Confidence 44 578889999999999999888888888988 999999999988 555544332 113488899
Q ss_pred cCCccccccCCCCcccccccCcccC--CCCCCcEEeCCCCeeeeecccccccCCCCC-CCCCCccEEEccCCCCCCCchh
Q 047429 237 LQNNMLSGSLPGVTELDGTFPKQFC--RPSSLVELDLESNQLWLRFNHINGSATPKL-CSSPMLQVLDFSHNNISGMVPT 313 (466)
Q Consensus 237 L~~n~l~~~~~~~~~l~~~lp~~~~--~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 313 (466)
+++|.++|.+| .+|..+. .+++|+.|++++|.+ + .+|..+ ..+++|+.|+|++|.++ .+|.
T Consensus 651 Ls~N~l~g~ip-------~l~~~l~~~~~~~L~~L~Ls~N~L-------~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 651 FSYNKIGSEGR-------NISCSMDDYKGINASTVTLSYNEI-------Q-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCSSCTTTTSS-------SCSSCTTTCCCCCEEEEECCSSCC-------C-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred CcCCcCCCccc-------cchhhhccccCCCcCEEEccCCcC-------C-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 99998887665 2332222 334677777777544 2 333332 24555555555555555 2222
Q ss_pred h-hh-------hhhhhhhcCCCCce-eeeeeecc--CCCCcccccceeeeeecccchhhhccCCCcEEECCC------Cc
Q 047429 314 C-LN-------NLSAMVQNGSSNVI-VEYRIQLI--DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD------NN 376 (466)
Q Consensus 314 ~-~~-------~l~~L~~l~~~n~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------N~ 376 (466)
. +. ++++|+.|+++++- ...+..+. ..+.+.......+.+.++ +..+..+++|+.|+|++ |+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCccccc
Confidence 2 21 12244444433221 11000000 000000000000001111 12233455566666654 33
Q ss_pred CCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCC
Q 047429 377 LSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421 (466)
Q Consensus 377 l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 421 (466)
+. +.+|.+|.++++|+.|+|++|++ +.+|...
T Consensus 794 l~------------~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 794 IL------------RQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp CC------------CCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred cc------------ccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 33 46777889999999999999999 6888874
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=299.97 Aligned_cols=386 Identities=16% Similarity=0.173 Sum_probs=245.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|++++|.+++..+ ..|.++++|++|++++|.+++.. +..+.. +++|++|++++|.++.++. . . +
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~lp~--~---~--l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLD--ISVFKF-NQELEYLDLSHNKLVKISC--H---P--T 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEE--GGGGTT-CTTCCEEECCSSCCCEEEC--C---C--C
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcC--hHHhhc-ccCCCEEecCCCceeecCc--c---c--c
Confidence 789999999999988776 78899999999999999988773 334444 9999999999999886544 2 4 8
Q ss_pred CCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc--cccc-ccccc--ccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL--ASLT-SLNYI--TGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~-~~n~l--~~~~~~~l~~~~ 166 (466)
++|++|++++|.+++ ..|..+..+ ++|++|++++|.+.+ . .+..+++| +.|+ +.|.+ .+.....++.-.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---h-hccccccceeeEEEeecccccccccccccccccc
Confidence 899999999999987 367888888 899999999998875 2 56777777 8888 77776 333111111000
Q ss_pred ---------------cCccccccCC-------------------------------------------------------
Q 047429 167 ---------------VRPKYAFSNV------------------------------------------------------- 176 (466)
Q Consensus 167 ---------------~~~~~~l~~l------------------------------------------------------- 176 (466)
......+..+
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 0000011112
Q ss_pred --CccCEEecCCCcCCC-CCccc-----CCCCCcCEEEeeCCcCCCccc-hhhhhccccccccccceEecCCccccccCC
Q 047429 177 --TSLMDLDLSKNQITG-IPKSF-----GDMCCLKTLKIHDNILTAKLP-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 177 --~~L~~L~Ls~n~l~~-~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
++|++|++++|.+++ +|..+ ..+++|+.+++++|.+ ..| ..+...+.. .+|+.|++++|.+.+
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~---~~L~~L~l~~n~l~~--- 316 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN---MNIKNFTVSGTRMVH--- 316 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT---CCCSEEEEESSCCCC---
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc---CceeEEEcCCCcccc---
Confidence 245566666666653 56555 6666666666666666 222 222222110 246677777776651
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC--CchhhhhhhhhhhhcC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG--MVPTCLNNLSAMVQNG 325 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~ 325 (466)
.+ .+..+++|++|++++| .+++..|..++.+++|++|++++|.+++ .+|..++++++|+.|+
T Consensus 317 --------~~-~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 317 --------ML-CPSKISPFLHLDFSNN-------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp --------CC-CCSSCCCCCEEECCSS-------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred --------cc-chhhCCcccEEEeECC-------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 11 1256677888888774 4455567777777888888888888775 4456677777777777
Q ss_pred CCCceee--eeeeccCC-CCcccccceeeeeecccchhhhcc-CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC
Q 047429 326 SSNVIVE--YRIQLIDD-PEFDYQDRALLVWKPIDSIYKITL-GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS 401 (466)
Q Consensus 326 ~~n~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~ 401 (466)
++++... .+...... ..+.. +......+.......+ +.|+.|++++|+++ .+|.++..++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~---L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-------------~ip~~~~~l~ 444 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLS---LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-------------SIPKQVVKLE 444 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCE---EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-------------CCCGGGGGCT
T ss_pred CCCCcCCcccccchhccCccCCE---EECcCCCCCcchhhhhcccCCEEECCCCccc-------------ccchhhhcCC
Confidence 5444322 11110000 00000 0000011111111122 46777777777776 6677778999
Q ss_pred CCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 402 HLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 402 ~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
+|++|++++|+++ .+|.. .+..+......+...+++.|.|.....+..|+...
T Consensus 445 ~L~~L~L~~N~l~-~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp TCCEEECCSSCCC-CCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCcCC-ccCHH-HhccCCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 9999999999999 78876 34555666666777788888887755336665543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=294.16 Aligned_cols=354 Identities=18% Similarity=0.142 Sum_probs=273.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..++++++|++|++++|.+.+..++..|.++++|++|+|++|.++... +..+.. +++|++|++++|.+++..+...
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--TGAFNG-LANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--TTTTTT-CTTCCEEECTTSCCBTHHHHSS
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--hhhccC-cccCCEEeCCCCCCCccccCcc
Confidence 5678999999999999999875544378999999999999999998773 444555 9999999999999987433213
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhh-hhcccCCCcEEEccCCccccCCChhhhhcC--Ccccccc-cccccccccccC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHC-LSHISKSLVYLDLSNNQLQGPTPDYAFRNM--TSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~-~~n~l~~~~~~~ 161 (466)
.+.. +++|++|++++|.+++..|.. +..+ ++|++|++++|.+.+..+. .+..+ .+|+.|+ +.|.+.......
T Consensus 124 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 124 FFKP--LTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp TTTT--CTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cccC--cccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhh
Confidence 3666 999999999999999887776 7888 9999999999999987777 77766 6889999 888887753211
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCC-CCcccCC---CCCcCEEEeeCCcCCCccch------hhhhccccccccc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGD---MCCLKTLKIHDNILTAKLPE------LFLNFSAGCAKKS 231 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~---l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~~~~~ 231 (466)
+.. .....+..+++|++|++++|.+++ .|..+.. .++|+.|++++|.+.+.... .....+.+...++
T Consensus 200 ~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 200 LGW---EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTH---HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred ccc---cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 110 000123466899999999999987 5554433 37999999999876543211 0001122223357
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
|+.|++++|.+++. .|..+..+++|++|++++| .+++..+..+..+++|++|++++|.+++..
T Consensus 277 L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 277 VKTCDLSKSKIFAL----------LKSVFSHFTDLEQLTLAQN-------EINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp CCEEECCSSCCCEE----------CTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ceEEEecCcccccc----------chhhcccCCCCCEEECCCC-------cccccChhHhcCcccCCEEECCCCccCCcC
Confidence 99999999999843 3566889999999999995 556677888999999999999999999888
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
|..|.++++|+.|+++++.. ....+..+..+++|++|+|++|++++ +|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--------- 387 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHI----------------------RALGDQSFLGLPNLKELALDTNQLKS-VP--------- 387 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCC----------------------CEECTTTTTTCTTCCEEECCSSCCSC-CC---------
T ss_pred hhHhcCcccCCEEECCCCcc----------------------cccChhhccccccccEEECCCCcccc-CC---------
Confidence 99999999999999655432 12233445678999999999999993 33
Q ss_pred CCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 392 KIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 392 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+..+..+++|++|++++|++++..|..
T Consensus 388 --~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 388 --DGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp --TTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred --HhHhccCCcccEEEccCCCcccCCCcc
Confidence 234789999999999999999888853
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=303.92 Aligned_cols=330 Identities=18% Similarity=0.177 Sum_probs=267.0
Q ss_pred cccccc--CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC-CCC-ccchHHHHhcCC------CCCCEEEcCC
Q 047429 5 EAGFHI--SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD-LRE-ATDWLQVVITGL------PSLRELDLSS 74 (466)
Q Consensus 5 ~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~~l------~~L~~L~Ls~ 74 (466)
-|+.++ ++++|++|++++|.+.+..| ..+.++++|++|++++|. +++ .. |..+.. + ++|++|++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~l--p~~~~~-L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQL--KDDWQA-LADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHH--HHHHHH-HHHSGGGGTCCEEECCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccc--hHHHHh-hhccccCCCCCEEECCC
Confidence 356677 99999999999999998888 899999999999999998 876 21 666655 5 9999999999
Q ss_pred CCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc-ccccc-ccc
Q 047429 75 SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS-LASLT-SLN 152 (466)
Q Consensus 75 n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~-~~n 152 (466)
|.++.++.. ..+.. +++|++|++++|.+++.+| .+..+ ++|++|++++|.+. .+|. .+..+++ |+.|+ +.|
T Consensus 315 n~l~~ip~~-~~l~~--l~~L~~L~L~~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 315 NNLKTFPVE-TSLQK--MKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHN 387 (636)
T ss_dssp SCCSSCCCH-HHHTT--CTTCCEEECCSCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSS
T ss_pred CcCCccCch-hhhcc--CCCCCEEeCcCCcCccchh-hhCCC-CCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCC
Confidence 999954320 15777 9999999999999997888 88888 99999999999999 7888 8999999 99999 999
Q ss_pred ccccccccCCCccccCccccccCC--CccCEEecCCCcCCC-CCcccC-------CCCCcCEEEeeCCcCCCccchhhhh
Q 047429 153 YITGISKCSLPITLVRPKYAFSNV--TSLMDLDLSKNQITG-IPKSFG-------DMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 153 ~l~~~~~~~l~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~-~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
.++. +| ..+..+ ++|++|++++|.+.+ +|..+. .+++|++|++++|.+++..+..+..
T Consensus 388 ~l~~-----lp-------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 388 KLKY-----IP-------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp CCSS-----CC-------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred cCcc-----cc-------hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 9884 55 455554 489999999999998 777777 7889999999999999655555544
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccC--------CCCCCcEEeCCCCeeeeecccccccCCCCCC--
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC--------RPSSLVELDLESNQLWLRFNHINGSATPKLC-- 292 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~--------~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~-- 292 (466)
+ ++|+.|++++|.++ .+|..+. ++++|++|++++|++ + .+|..+.
T Consensus 456 l------~~L~~L~Ls~N~l~-----------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-------~-~lp~~~~~~ 510 (636)
T 4eco_A 456 G------SPLSSINLMGNMLT-----------EIPKNSLKDENENFKNTYLLTSIDLRFNKL-------T-KLSDDFRAT 510 (636)
T ss_dssp T------CCCSEEECCSSCCS-----------BCCSSSSEETTEECTTGGGCCEEECCSSCC-------C-BCCGGGSTT
T ss_pred C------CCCCEEECCCCCCC-----------CcCHHHhccccccccccCCccEEECcCCcC-------C-ccChhhhhc
Confidence 4 67999999999998 4443322 334999999999665 3 6888887
Q ss_pred CCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 293 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
.+++|++|+|++|++++ +|..+.++++|+.|+++++... . ...+.+..+..+..++.|++|+|
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l-----s-----------~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA-----Q-----------GNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT-----T-----------CCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc-----c-----------cCcccccChHHHhcCCCCCEEEC
Confidence 99999999999999997 8899999999999986432200 0 00012333445677999999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|++. . +|..+. ++|+.|++++|++.
T Consensus 574 s~N~l~-~------------ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDIR-K------------VNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCC-B------------CCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcCC-c------------cCHhHh--CcCCEEECcCCCCc
Confidence 999995 4 454454 79999999999987
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=313.00 Aligned_cols=289 Identities=23% Similarity=0.286 Sum_probs=193.8
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
-.+++++|||++|.+++..+ ..|.++++|++|+|++|....... +..+.. +++|++|+|++|.+....+ ..+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~-L~~L~~L~Ls~N~l~~~~p--~~~~~- 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTID-KEAFRN-LPNLRILDLGSSKIYFLHP--DAFQG- 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEEC-TTTTSS-CTTCCEEECTTCCCCEECT--TSSCS-
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccC-HHHhcC-CCCCCEEECCCCcCcccCH--hHccC-
Confidence 44678888888888887766 778888888888888885433210 223434 8888888888888877766 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhh--hhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHC--LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV 167 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~ 167 (466)
+++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+...|+++++|++|+ +.|.+++. .+
T Consensus 96 -l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~----~~---- 165 (844)
T 3j0a_A 96 -LFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV----CE---- 165 (844)
T ss_dssp -CSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC----CS----
T ss_pred -CcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee----CH----
Confidence 888888888888887654443 7777 88888888888887655432678888888888 77877765 33
Q ss_pred CccccccCC--CccCEEecCCCcCCC-CCcccCCCCC------cCEEEeeCCcCCCccchhhhhc---------------
Q 047429 168 RPKYAFSNV--TSLMDLDLSKNQITG-IPKSFGDMCC------LKTLKIHDNILTAKLPELFLNF--------------- 223 (466)
Q Consensus 168 ~~~~~l~~l--~~L~~L~Ls~n~l~~-~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~--------------- 223 (466)
..+..+ ++|+.|++++|.+.+ .|..+..+++ |++|++++|.+++..+..+...
T Consensus 166 ---~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 166 ---HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp ---GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred ---HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 444444 677777777777766 4444444443 7777777776665544433221
Q ss_pred -----------------cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------
Q 047429 224 -----------------SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL---------- 276 (466)
Q Consensus 224 -----------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l---------- 276 (466)
+.+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----------RVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----------CCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----------hhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 112223467777777777764322 2344444455555444433
Q ss_pred -------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCC
Q 047429 277 -------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 277 -------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n 328 (466)
++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|+.|++++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 2344666666677888888888888888888877777888888888887433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=302.33 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=54.7
Q ss_pred hccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHH
Q 047429 362 ITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQC 441 (466)
Q Consensus 362 ~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
..++.|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|+. +..+......+...++|.|
T Consensus 448 ~~l~~L~~L~Ls~N~l~-------------~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-------------TLPD-ASLFPVLLVMKISRNQLKSVPDGI--FDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCCTTCCEEECCSSCCS-------------SCCC-GGGCTTCCEEECCSSCCCCCCTTG--GGGCTTCCEEECCSSCBCC
T ss_pred ccCChhcEEECCCCccC-------------cCCC-cccCccCCEEecCCCccCCcCHHH--HhcCcccCEEEecCCCccC
Confidence 35777888888888887 4554 467899999999999999766653 2334444555666667778
Q ss_pred hhhhhhhhHHHHHH
Q 047429 442 LNNVEYKLYAWIAV 455 (466)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (466)
.|.....+..|+..
T Consensus 512 ~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 512 SCPRIDYLSRWLNK 525 (549)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHh
Confidence 77766666677654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=296.43 Aligned_cols=289 Identities=21% Similarity=0.243 Sum_probs=210.7
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.+++.. +..+.. +++|++|++++|.++..++ ..+.. +
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~--~~~~~--l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLE--PELCQK-LPMLKVLNLQHNELSQLSD--KTFAF--C 96 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCC--TTHHHH-CTTCCEEECCSSCCCCCCT--TTTTT--C
T ss_pred CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccC--HHHHhc-ccCcCEEECCCCccCccCh--hhhcc--C
Confidence 689999999999998776 78999999999999999998874 455666 9999999999999998876 56777 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++..+..|..+ ++|++|++++|.+.+..+. .++++++|++|+ +.|.+++. .+ .
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~-------~ 163 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL----KS-------E 163 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB----CH-------H
T ss_pred CCCCEEECCCCccCccChhHcccc-CCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc----CH-------H
Confidence 999999999999998888889999 9999999999999987777 889999999999 99988775 22 2
Q ss_pred cc--cCCCccCEEecCCCcCCC-CCcccCCC---------------------------CCcCEEEeeCCcCCCccchhhh
Q 047429 172 AF--SNVTSLMDLDLSKNQITG-IPKSFGDM---------------------------CCLKTLKIHDNILTAKLPELFL 221 (466)
Q Consensus 172 ~l--~~l~~L~~L~Ls~n~l~~-~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~ 221 (466)
.+ ..+++|++|++++|.+++ .|..+..+ ++|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 22 345788888888888877 33444433 4566666666766666555554
Q ss_pred hccccccccccceEecCCccccccCCCC--------------cccccccCcccCCCCCCcEEeCCCCeeeeeccccc-cc
Q 047429 222 NFSAGCAKKSLQSFMLQNNMLSGSLPGV--------------TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN-GS 286 (466)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~-~~ 286 (466)
.. ..++|++|++++|.+++..+.. ..+.+..|..+..+++|++|++++|.. ++.+. ..
T Consensus 244 ~l----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~---~~~~~~~~ 316 (680)
T 1ziw_A 244 GL----KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT---KQSISLAS 316 (680)
T ss_dssp GG----GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC---CC------
T ss_pred cc----CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh---hccccccc
Confidence 33 0123777777777776433211 011122233444444444444444321 00000 02
Q ss_pred CC----CCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 287 AT----PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 287 ~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+| ..+..+++|++|++++|.+++..+..|.++++|+.|+++++
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 22 26778889999999999999888888999999998886554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=297.45 Aligned_cols=180 Identities=21% Similarity=0.227 Sum_probs=151.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~-l~~L~~L~Ls~n~l~~~~p--~~~~~--l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIE--DKAWHG-LHHLSNLILTGNPIQSFSP--GSFSG--L 103 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTCCCCCCCT--TSSTT--C
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccC--HHHhhc-hhhcCEeECCCCcccccCh--hhcCC--c
Confidence 689999999999998877 78999999999999999998873 333444 9999999999999999877 67888 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc-CCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG-PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+ .+|. .++++++|++|+ +.|.+++. .+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~----~~------- 170 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI----TV------- 170 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE----CT-------
T ss_pred ccCCEEEccCCccccccccccCCC-CCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec----Ch-------
Confidence 999999999999998877889999 999999999999986 4687 899999999999 99998876 33
Q ss_pred ccccCCCccC----EEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 171 YAFSNVTSLM----DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 171 ~~l~~l~~L~----~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+..+++|+ +|++++|.++.++.......+|++|++++|.++
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 4455555544 788888888886654444557888888888764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=288.92 Aligned_cols=300 Identities=22% Similarity=0.225 Sum_probs=241.9
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|+|++|.+++..+ ..|..+++|++|+|++|.++.+. +..+.. +++|++|+|++|.++..++ ..+.. +
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l 103 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVE--PGAFNN-LFNLRTLGLRSNRLKLIPL--GVFTG--L 103 (477)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCSCCT--TSSTT--C
T ss_pred CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeC--hhhhhC-CccCCEEECCCCcCCccCc--ccccC--C
Confidence 578999999999998777 78899999999999999988773 334444 9999999999999988776 56677 8
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+.+..+..|..+ ++|++|++++|.+.+..+. .|.++++|+.|+ +.|.++.. .+ .
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~-------~ 170 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI----PT-------E 170 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC----CH-------H
T ss_pred CCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc----Ch-------h
Confidence 999999999999998888888888 9999999999999877777 888999999999 88888775 22 4
Q ss_pred cccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 172 AFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
.+..+++|+.|++++|.+..+ +..+..+++|++|++++|...+..+...... .+|+.|++++|.++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~L~~L~l~~n~l~------- 237 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG------LNLTSLSITHCNLT------- 237 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT------CCCSEEEEESSCCC-------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC------ccccEEECcCCccc-------
Confidence 688899999999999999884 4578889999999999988776666544333 37999999999988
Q ss_pred ccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 251 ELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 251 ~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
.+| ..+..+++|++|++++|. +++..+..+..+++|++|+|++|.+++..|..|.++++|
T Consensus 238 ----~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------- 298 (477)
T 2id5_A 238 ----AVPYLAVRHLVYLRFLNLSYNP-------ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-------- 298 (477)
T ss_dssp ----SCCHHHHTTCTTCCEEECCSSC-------CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC--------
T ss_pred ----ccCHHHhcCccccCeeECCCCc-------CCccChhhccccccCCEEECCCCccceECHHHhcCcccC--------
Confidence 555 357888999999999854 455666778899999999999999998878877777666
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
+.|+|++|++++ +| +..|..+++|+.|+++
T Consensus 299 --------------------------------------~~L~L~~N~l~~-~~-----------~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 299 --------------------------------------RVLNVSGNQLTT-LE-----------ESVFHSVGNLETLILD 328 (477)
T ss_dssp --------------------------------------CEEECCSSCCSC-CC-----------GGGBSCGGGCCEEECC
T ss_pred --------------------------------------CEEECCCCcCce-eC-----------HhHcCCCcccCEEEcc
Confidence 777777777772 22 2245667777777777
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|.+.+
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 777753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=294.13 Aligned_cols=367 Identities=19% Similarity=0.231 Sum_probs=244.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|+|++|.++++. +..+.. +++|++|++++|.++.++. . . +
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~lp~--~---~--l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLD--FHVFLF-NQDLEYLDVSHNRLQNISC--C---P--M 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEEC--TTTTTT-CTTCCEEECTTSCCCEECS--C---C--C
T ss_pred CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCC--HHHhCC-CCCCCEEECCCCcCCccCc--c---c--c
Confidence 688899999998887766 78888999999999999888763 333444 8899999999998886554 2 4 8
Q ss_pred CCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc--cccc-ccccc--ccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL--ASLT-SLNYI--TGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~-~~n~l--~~~~~~~l~~~~ 166 (466)
++|++|++++|.+++. .|..|.++ ++|++|++++|.+.+. .+..+++| +.|+ +.|.+ ++.....++.-.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 8899999999988864 35788888 8899999999888753 34455555 8888 77776 433111111000
Q ss_pred ---------------cCccccccCCC------------------------------------------------------
Q 047429 167 ---------------VRPKYAFSNVT------------------------------------------------------ 177 (466)
Q Consensus 167 ---------------~~~~~~l~~l~------------------------------------------------------ 177 (466)
......+..++
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 00001111222
Q ss_pred -ccCEEecCCCcCCC-CCccc-----CCCCCcCEEEeeCCcCCCccc-hhhhhcccc-------------------cccc
Q 047429 178 -SLMDLDLSKNQITG-IPKSF-----GDMCCLKTLKIHDNILTAKLP-ELFLNFSAG-------------------CAKK 230 (466)
Q Consensus 178 -~L~~L~Ls~n~l~~-~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~-------------------~~~~ 230 (466)
+|++|++++|.+++ +|..+ ..++.|+.+++..+.+ ..| ..+...+.. ...+
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 44555555555543 44433 2333222222222222 111 000000000 1235
Q ss_pred ccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc--cCCCCCCCCCCccEEEccCCCCC
Q 047429 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING--SATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~--~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
+|++|++++|.+++. +|..+..+++|++|++++|++ ++ .+|..+..+++|++|++++|.++
T Consensus 354 ~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 354 SFTFLNFTQNVFTDS----------VFQGCSTLKRLQTLILQRNGL-------KNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCEEECCSSCCCTT----------TTTTCCSCSSCCEEECCSSCC-------CBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CceEEECCCCccccc----------hhhhhcccCCCCEEECCCCCc-------CCcccchhhhcCCCCCCEEECCCCcCC
Confidence 799999999999843 456789999999999999665 33 33467899999999999999999
Q ss_pred CCch-hhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhcc-CCCcEEECCCCcCCcCCcHHHH
Q 047429 309 GMVP-TCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL-GLPKSIDLSDNNLSGKIPEEIT 386 (466)
Q Consensus 309 ~~~p-~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~ip~~i~ 386 (466)
+.+| ..+..+++|+.|+++++... + .....+ +.|+.|+|++|+++
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~---~~~~~l~~~L~~L~L~~N~l~-------- 463 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLT----------------------G---SVFRCLPPKVKVLDLHNNRIM-------- 463 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCC----------------------G---GGGSSCCTTCSEEECCSSCCC--------
T ss_pred CccChhhhcCcccCCEEECCCCCCC----------------------c---chhhhhcCcCCEEECCCCcCc--------
Confidence 8455 46888999998885554321 0 011123 58899999999998
Q ss_pred hhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHH
Q 047429 387 SLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIA 454 (466)
Q Consensus 387 ~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (466)
.+|.++..+++|++|+|++|+++ .+|.. .+..+......+...++|.|.|.....+..|..
T Consensus 464 -----~ip~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 524 (562)
T 3a79_B 464 -----SIPKDVTHLQALQELNVASNQLK-SVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 524 (562)
T ss_dssp -----CCCTTTTSSCCCSEEECCSSCCC-CCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHH
T ss_pred -----ccChhhcCCCCCCEEECCCCCCC-CCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHH
Confidence 66666779999999999999999 78876 345556666677777888888887653344643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=293.99 Aligned_cols=366 Identities=19% Similarity=0.219 Sum_probs=266.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+ +...+..+++|++|++++|.++..++ ..+.. +
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--L 99 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECT--TTTTT--C
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCcCCcCCccCH--hhhcC--c
Confidence 579999999999998877 7899999999999999999887 33444449999999999999998876 57778 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc-CCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG-PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++|++|++++|.++...+..+..+ ++|++|++++|.+.+ ..|. .++++++|++|+ +.|.+++. .+
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~----~~------- 166 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI----YC------- 166 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEE----CG-------
T ss_pred cccccccccccccccCCCcccccc-ccccEEecCCCccceecChh-hhcccCCCCEEeCcCCcccee----cH-------
Confidence 999999999999997766678888 999999999999986 3687 899999999999 99998876 33
Q ss_pred ccccCCCcc----CEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCC-------------------------------
Q 047429 171 YAFSNVTSL----MDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTA------------------------------- 214 (466)
Q Consensus 171 ~~l~~l~~L----~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~------------------------------- 214 (466)
..+..+++| +.|++++|.++.++ ..+... +|+.|++++|....
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 566777777 88999999998844 445444 78888888773221
Q ss_pred ---------------------------ccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCc
Q 047429 215 ---------------------------KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLV 267 (466)
Q Consensus 215 ---------------------------~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~ 267 (466)
..+..+... ++|+.|++++|.++ .+|..+..+ +|+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~l~-----------~l~~~~~~~-~L~ 307 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL------TNVSSFSLVSVTIE-----------RVKDFSYNF-GWQ 307 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG------TTCSEEEEESCEEC-----------SCCBCCSCC-CCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCc------CcccEEEecCccch-----------hhhhhhccC-Ccc
Confidence 111111111 46788888888777 566666666 777
Q ss_pred EEeCCCCee--------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCc--hhhhhhhhhhhhcCCCCc-e
Q 047429 268 ELDLESNQL--------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV--PTCLNNLSAMVQNGSSNV-I 330 (466)
Q Consensus 268 ~L~L~~n~l--------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~l~~~n~-~ 330 (466)
+|++++|.+ ++++|.+.+..+. ..+++|++|++++|.+++.. |..+.++++|+.|+++++ +
T Consensus 308 ~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred EEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 777777654 2444555444433 67788889999888888654 678888888888885443 4
Q ss_pred eeeeeeccCCCCcccccceeeeeecccc-hhhhccCCCcEEECCCCcCCcCCcHHHHhh------------cc-CCCccc
Q 047429 331 VEYRIQLIDDPEFDYQDRALLVWKPIDS-IYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LI-GKIPRS 396 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~-~~ip~~ 396 (466)
......+.....+..............+ ..+..+++|++|++++|++.+..|..+..+ +. +.+|..
T Consensus 386 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 4333322222222222221122222222 345667788888888888776666555433 22 468888
Q ss_pred ccCCCCCCeeeccCCcCcccCCCC
Q 047429 397 FSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 397 l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+..+++|++|++++|++++..|..
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhcccCCCEEECCCCccccCChhh
Confidence 999999999999999999777765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=296.64 Aligned_cols=411 Identities=19% Similarity=0.182 Sum_probs=218.0
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
++++|||++|.|+...+ ..|.++++|++|+|++|+|+.+ +...+.++++|++|+|++|+++.+++ ..|.. ++
T Consensus 53 ~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~--L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--LS 124 (635)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECG--GGGTT--CT
T ss_pred CCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEccCCcCCCCCH--HHhcC--CC
Confidence 56677777777766555 5666777777777777766665 33333336777777777776666655 45555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC-CChhhhhcCCcccccc-cccccccccccCCC--------
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP-TPDYAFRNMTSLASLT-SLNYITGISKCSLP-------- 163 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~-------- 163 (466)
+|++|++++|.+++..+..|.++ ++|++|++++|.+.+. .|. .++.+++|++|+ +.|.+++.....+.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCCcCCCCChhhhhcC-cccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 77777777777666555566666 6677777777766542 344 566666666666 66655443111000
Q ss_pred ---------------ccc--------------------------------------------------------------
Q 047429 164 ---------------ITL-------------------------------------------------------------- 166 (466)
Q Consensus 164 ---------------~~~-------------------------------------------------------------- 166 (466)
...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 000
Q ss_pred -------------cCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc----------
Q 047429 167 -------------VRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF---------- 223 (466)
Q Consensus 167 -------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---------- 223 (466)
......+....+++.+++.++.+..++ .+.....++.|++.+|.+.+..+..+..+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 000000111112222222222222111 12233455556665555543322211110
Q ss_pred ---cccccccccceEecCCccccccC--CC-------Cc------ccccccCcccCCCCCCcEEeCCCCeeeeecccccc
Q 047429 224 ---SAGCAKKSLQSFMLQNNMLSGSL--PG-------VT------ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285 (466)
Q Consensus 224 ---~~~~~~~~L~~L~L~~n~l~~~~--~~-------~~------~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~ 285 (466)
......++|+.+++++|.+.... +. .. .-...++..+..+++|+.+++..+.. ...
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~------~~~ 435 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL------KQM 435 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEE------EST
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccc------ccc
Confidence 00011145677777777664211 10 00 00012344456667777777766543 111
Q ss_pred cCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-ee-eeeecc-CCCCcccccceeeeeecccchhhh
Q 047429 286 SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VE-YRIQLI-DDPEFDYQDRALLVWKPIDSIYKI 362 (466)
Q Consensus 286 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
..+..+..+++++.++++.|.+.+..+..+..++.++.|+++.+- .. ...... ....+.......+.+.++++..+.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 122334455555555555555555555555555555555533221 11 000000 001111111111122344555667
Q ss_pred ccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCcccc-ccccccchhHHHHHH
Q 047429 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF-EASAYKNWTHAYFQC 441 (466)
Q Consensus 363 ~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~-~~~~~~~~~~~~~~~ 441 (466)
.+++|++|+|++|++++ ..|..|.++++|++|+|++|+|++..|+... .+ ....+.+...|+|.|
T Consensus 516 ~l~~L~~L~Ls~N~l~~------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFS------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCB------------CCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCC------------CChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEeeCCCCcc
Confidence 78889999999999884 3355689999999999999999977776542 22 445667788899999
Q ss_pred hhhhhhhhHHHHHHH
Q 047429 442 LNNVEYKLYAWIAVK 456 (466)
Q Consensus 442 ~~~~~~~~~~~~~~~ 456 (466)
.|+..+ +..|+...
T Consensus 582 ~C~~~~-~~~wl~~~ 595 (635)
T 4g8a_A 582 TCEHQS-FLQWIKDQ 595 (635)
T ss_dssp SGGGHH-HHHHHHHT
T ss_pred cCCcHH-HHHHHHhC
Confidence 999754 88888654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=301.72 Aligned_cols=348 Identities=18% Similarity=0.206 Sum_probs=263.2
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEc-cCCCCCCc--------------------------------------
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSL-QGLDLREA-------------------------------------- 53 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-s~n~l~~~-------------------------------------- 53 (466)
..++.|+|++|.+.+..| ..++.+++|++|+| ++|.+++.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999999888 89999999999999 77753221
Q ss_pred ------------------------------------cchHHHHhcCCCCCCEEEcCCCCCCC------------------
Q 047429 54 ------------------------------------TDWLQVVITGLPSLRELDLSSSAPPK------------------ 79 (466)
Q Consensus 54 ------------------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 79 (466)
..+|..+.. +++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 003556666 9999999999999998
Q ss_pred CCccccccc--cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc-ccc-CCChhhhhcCC-------ccccc
Q 047429 80 INYRSHSLV--NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ-LQG-PTPDYAFRNMT-------SLASL 148 (466)
Q Consensus 80 ~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~-l~~-~~~~~~~~~l~-------~L~~L 148 (466)
++. .++ . +++|++|++++|.+.+..|..+.++ ++|++|++++|. +++ .+|. .++.++ +|+.|
T Consensus 481 iP~---~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 481 ENE---ELSWSN--LKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp TTS---CCCGGG--CTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEE
T ss_pred CCh---hhhhcc--CCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEE
Confidence 333 444 7 9999999999999999999999999 999999999998 887 6777 777666 99999
Q ss_pred c-cccccccccccCCCccccCccc--cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccc
Q 047429 149 T-SLNYITGISKCSLPITLVRPKY--AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSA 225 (466)
Q Consensus 149 ~-~~n~l~~~~~~~l~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 225 (466)
+ +.|.++. +| . .+..+++|++|++++|.++.+| .+..+++|++|++++|.++ .+|..+..+
T Consensus 554 ~Ls~N~L~~-----ip-------~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-- 617 (876)
T 4ecn_A 554 YMGYNNLEE-----FP-------ASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-- 617 (876)
T ss_dssp ECCSSCCCB-----CC-------CHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE--
T ss_pred EeeCCcCCc-----cC-------ChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhc--
Confidence 9 9999883 66 6 7899999999999999999888 8999999999999999998 666655554
Q ss_pred cccccc-cceEecCCccccccCCCCcccccccCcccCCCCC--CcEEeCCCCeeeeecccccccCCC---CCC--CCCCc
Q 047429 226 GCAKKS-LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSS--LVELDLESNQLWLRFNHINGSATP---KLC--SSPML 297 (466)
Q Consensus 226 ~~~~~~-L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~--L~~L~L~~n~l~l~~n~~~~~~~~---~~~--~l~~L 297 (466)
++ |+.|++++|.++ .+|..+..++. |+.|++++|. +.+.+|. .+. .+++|
T Consensus 618 ----~~~L~~L~Ls~N~L~-----------~lp~~~~~~~~~~L~~L~Ls~N~-------l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 618 ----TDQVEGLGFSHNKLK-----------YIPNIFNAKSVYVMGSVDFSYNK-------IGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ----CTTCCEEECCSSCCC-----------SCCSCCCTTCSSCEEEEECCSSC-------TTTTSSSCSSCTTTCCCCCE
T ss_pred ----cccCCEEECcCCCCC-----------cCchhhhccccCCCCEEECcCCc-------CCCccccchhhhccccCCCc
Confidence 56 999999999998 66777776654 9999999954 4554443 222 44589
Q ss_pred cEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCC--------Ccccccceeeeeecccchhh-hccCCC
Q 047429 298 QVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDP--------EFDYQDRALLVWKPIDSIYK-ITLGLP 367 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L 367 (466)
+.|+|++|.+++..+..+..+++|+.|+++++ +...+....... .+.......+.+..++.... ..+++|
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTC
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCc
Confidence 99999999999655555668999999996554 332221111110 11111111111222222221 266777
Q ss_pred cEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccC------CcCcccCCCC
Q 047429 368 KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSN------NNFSGKIPSS 420 (466)
Q Consensus 368 ~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~ 420 (466)
+.|+|++|+++ .+|.++..+++|+.|+|++ |++.+.+|..
T Consensus 756 ~~L~Ls~N~L~-------------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 756 SNMDVSYNCFS-------------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CEEECCSSCCS-------------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CEEEeCCCCCC-------------ccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 77777777777 4677788999999999976 8888888876
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=265.44 Aligned_cols=311 Identities=23% Similarity=0.290 Sum_probs=248.3
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.+...+..+++|++|++++|.+... ..+..+++|++|++++|.++.+ +. +.. +++|++|++++|.++..+
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~i~~~---~~-~~~-l~~L~~L~L~~n~i~~~~-- 104 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDI---SP-LSN-LVKLTNLYIGTNKITDIS-- 104 (347)
T ss_dssp TSEECHHHHTTCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCG--
T ss_pred CCcccchhcccccEEEEeCCccccc---hhhhhcCCccEEEccCCccccc---hh-hhc-CCcCCEEEccCCcccCch--
Confidence 3445566889999999999999865 3488899999999999999887 33 444 999999999999998752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.++...+ +..+ ++|++|++++|...... . .+..+++|+.|+ +.|.+...
T Consensus 105 --~~~~--l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~----- 170 (347)
T 4fmz_A 105 --ALQN--LTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDL-S-PLSNMTGLNYLTVTESKVKDV----- 170 (347)
T ss_dssp --GGTT--CTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCC-G-GGTTCTTCCEEECCSSCCCCC-----
T ss_pred --HHcC--CCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCcccc-c-chhhCCCCcEEEecCCCcCCc-----
Confidence 4666 9999999999999986544 7778 99999999999766443 4 588999999999 88888765
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
..+..+++|++|++++|.+.+++. +..+++|+.|++++|.+++..+ +... ++|++|++++|.+
T Consensus 171 --------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~------~~L~~L~l~~n~l 233 (347)
T 4fmz_A 171 --------TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANM------TRLNSLKIGNNKI 233 (347)
T ss_dssp --------GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGC------TTCCEEECCSSCC
T ss_pred --------hhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcC------CcCCEEEccCCcc
Confidence 347889999999999999998765 7889999999999999986655 3333 6799999999999
Q ss_pred cccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 243 ~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
+ .++. +..+++|++|++++|.+ + .+ +.+..+++|++|++++|.+++. ..+..+++|+
T Consensus 234 ~-----------~~~~-~~~l~~L~~L~l~~n~l-------~-~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 234 T-----------DLSP-LANLSQLTWLEIGTNQI-------S-DI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp C-----------CCGG-GTTCTTCCEEECCSSCC-------C-CC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred C-----------CCcc-hhcCCCCCEEECCCCcc-------C-CC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 8 4454 88899999999999765 2 22 5688999999999999999865 4588888888
Q ss_pred hcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 323 QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 323 ~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
.|+++++.. ....+..+..+++|++|++++|++++ ++. +..+++
T Consensus 291 ~L~L~~n~l----------------------~~~~~~~l~~l~~L~~L~L~~n~l~~-------------~~~-~~~l~~ 334 (347)
T 4fmz_A 291 SLFLNNNQL----------------------GNEDMEVIGGLTNLTTLFLSQNHITD-------------IRP-LASLSK 334 (347)
T ss_dssp EEECCSSCC----------------------CGGGHHHHHTCTTCSEEECCSSSCCC-------------CGG-GGGCTT
T ss_pred EEECcCCcC----------------------CCcChhHhhccccCCEEEccCCcccc-------------ccC-hhhhhc
Confidence 877554432 22334455678888899999988883 322 677888
Q ss_pred CCeeeccCCcCc
Q 047429 403 LGVVNLSNNNFS 414 (466)
Q Consensus 403 L~~L~Ls~N~l~ 414 (466)
|++|++++|.++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 999999988875
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=278.72 Aligned_cols=324 Identities=19% Similarity=0.253 Sum_probs=241.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCC-ccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKIN-YRS 84 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~ 84 (466)
++.|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++.++ .. . +++|++|++++|.+++.. +
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~--~-l~~L~~L~L~~N~l~~~~~p-- 108 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKIS---CH--P-TVNLKHLDLSFNAFDALPIC-- 108 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEEE---CC--C-CCCCSEEECCSSCCSSCCCC--
T ss_pred hhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeecC---cc--c-cCCccEEeccCCccccccch--
Confidence 3578999999999999999998877 88999999999999999999773 33 4 999999999999998753 3
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC--cEEEccCCcc--ccCCChhhhhc-------------------
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL--VYLDLSNNQL--QGPTPDYAFRN------------------- 141 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L--~~L~Ls~n~l--~~~~~~~~~~~------------------- 141 (466)
..++. +++|++|++++|.+++ ..+..+ ++| ++|++++|.+ .+..|. .+..
T Consensus 109 ~~~~~--l~~L~~L~L~~n~l~~---~~~~~l-~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 109 KEFGN--MSQLKFLGLSTTHLEK---SSVLPI-AHLNISKVLLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp GGGGG--CTTCCEEEEEESSCCG---GGGGGG-TTSCEEEEEEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCC
T ss_pred hhhcc--CCcceEEEecCcccch---hhcccc-ccceeeEEEeecccccccccccc-cccccccceEEEEeccCcchhhh
Confidence 46778 9999999999999986 345666 777 9999999988 555554 4443
Q ss_pred -------CCcccc---------------------------------------------------------cc-ccccccc
Q 047429 142 -------MTSLAS---------------------------------------------------------LT-SLNYITG 156 (466)
Q Consensus 142 -------l~~L~~---------------------------------------------------------L~-~~n~l~~ 156 (466)
+++|+. |+ +.|.+++
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 333333 33 3333332
Q ss_pred ccccCCCccccCccccc-----cCCCc--------------------------cCEEecCCCcCCCCCcccCCCCCcCEE
Q 047429 157 ISKCSLPITLVRPKYAF-----SNVTS--------------------------LMDLDLSKNQITGIPKSFGDMCCLKTL 205 (466)
Q Consensus 157 ~~~~~l~~~~~~~~~~l-----~~l~~--------------------------L~~L~Ls~n~l~~~~~~l~~l~~L~~L 205 (466)
. +| ..+ ..+++ |+.|++++|.+..++ .+..+++|++|
T Consensus 262 ~----~p-------~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 329 (520)
T 2z7x_B 262 Q----LD-------FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHL 329 (520)
T ss_dssp C----CC-------CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEE
T ss_pred c----cc-------cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEE
Confidence 2 33 333 44444 445555555444322 12678899999
Q ss_pred EeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc
Q 047429 206 KIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285 (466)
Q Consensus 206 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~ 285 (466)
++++|.+++..|..+..+ ++|+.|++++|++++.. .+|..+..+++|++|++++|.+ .+
T Consensus 330 ~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~l~--------~~~~~~~~l~~L~~L~Ls~N~l-------~~ 388 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHL------TELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSV-------SY 388 (520)
T ss_dssp ECCSSCCCTTTTTTCCCC------SSCCEEECCSSCCCBHH--------HHHHHHTTCTTCCEEECCSSCC-------BC
T ss_pred EeECCccChhhhhhhccC------CCCCEEEccCCccCccc--------cchHHHhhCCCCCEEECCCCcC-------Cc
Confidence 999999998777766555 68999999999998321 3456688999999999999554 44
Q ss_pred cCCC-CCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhcc
Q 047429 286 SATP-KLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL 364 (466)
Q Consensus 286 ~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
.+|. .+..+++|++|++++|.+++..|..+. ++|+.|+++++-.. .++. ....+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~----------------------~ip~-~~~~l 443 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK----------------------SIPK-QVVKL 443 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC----------------------CCCG-GGGGC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc----------------------ccch-hhhcC
Confidence 3554 478889999999999999887777664 67877775544321 1222 22378
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCccc
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ 416 (466)
++|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 444 ~~L~~L~L~~N~l~-------------~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 444 EALQELNVASNQLK-------------SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCEEECCCCcCC-------------ccCHHHhccCCcccEEECcCCCCccc
Confidence 99999999999999 44544 88999999999999999853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=298.04 Aligned_cols=247 Identities=20% Similarity=0.201 Sum_probs=177.2
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
.+..|.++++|++|||++|...+..++..|.++++|++|+|++|.++... +..+.. +++|++|+|++|.+++..+..
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--p~~~~~-l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH--PDAFQG-LFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC--TTSSCS-CSSCCCEECTTCCCSSCCSTT
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC--HhHccC-CcccCEeeCcCCCCCcccccC
Confidence 35678899999999999996554442278999999999999999998773 334444 999999999999998754421
Q ss_pred cccccCCCCCccEEEcCCCCCCchhh-hhhhcccCCCcEEEccCCccccCCChhhhhcC--Ccccccc-ccccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAY-HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNM--TSLASLT-SLNYITGISKC 160 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~-~~n~l~~~~~~ 160 (466)
..+.. +++|++|++++|.+++..+ ..|.++ ++|++|++++|.+.+..+. .+..+ ++|+.|+ +.|.+.+....
T Consensus 117 ~~~~~--L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 117 GYFRN--LKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CCCSS--CSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred ccccc--cCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc
Confidence 34667 9999999999999987654 568888 9999999999999877777 77766 6677777 66665543110
Q ss_pred C--------------------------CCcccc-----------------------------CccccccC--CCccCEEe
Q 047429 161 S--------------------------LPITLV-----------------------------RPKYAFSN--VTSLMDLD 183 (466)
Q Consensus 161 ~--------------------------l~~~~~-----------------------------~~~~~l~~--l~~L~~L~ 183 (466)
. .+..+. .....|.. .++|+.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 0 000000 00001111 25788889
Q ss_pred cCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCC
Q 047429 184 LSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCR 262 (466)
Q Consensus 184 Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~ 262 (466)
+++|.+.+ .+..+..+++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..+ ..+..
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~~----------~~~~~ 336 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL------DNLQVLNLSYNLLGELYS----------SNFYG 336 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC------SSCCEEEEESCCCSCCCS----------CSCSS
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC------CCCCEEECCCCCCCccCH----------HHhcC
Confidence 98888888 56678889999999999999988777776665 679999999999874433 34555
Q ss_pred CCCCcEEeCCCC
Q 047429 263 PSSLVELDLESN 274 (466)
Q Consensus 263 l~~L~~L~L~~n 274 (466)
+++|++|++++|
T Consensus 337 l~~L~~L~L~~N 348 (844)
T 3j0a_A 337 LPKVAYIDLQKN 348 (844)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 555555555553
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=273.75 Aligned_cols=310 Identities=20% Similarity=0.210 Sum_probs=204.1
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.++++++|++++|.++.... ..+..+++|++|++++|.++... +..+.. +++|++|++++|.++..++ ..+..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~- 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEID--TYAFAY-AHTIQKLYMGFNAIRYLPP--HVFQN- 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCCCCT--TTTTT-
T ss_pred ccCCceEEEecCCchhhCCh-hHhcccccCcEEECCCCcccccC--hhhccC-CCCcCEEECCCCCCCcCCH--HHhcC-
Confidence 45788888888888876655 66788888888888888887762 223344 8888888888888887766 45666
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|.++...+..|..+ ++|++|++++|.+.+..+. .++.+++|+.|+ +.|.++..
T Consensus 116 -l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 116 -VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC------------
T ss_pred -CCCCCEEECCCCccCcCCHHHhcCC-CCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc------------
Confidence 7888888888888886555556777 8888888888888766665 777888888888 77777664
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+..+++|++|++++|.++.++ ..++|++|++++|.++..... .+++|+.|++++|.+++
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~---------~~~~L~~L~l~~n~l~~----- 240 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTD----- 240 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECC---------CCSSCCEEECCSSCCCC-----
T ss_pred --ccccccccceeecccccccccC----CCCcceEEECCCCeeeecccc---------ccccccEEECCCCCCcc-----
Confidence 2445667777777777766532 234677777777776643221 11457777777777762
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
. ..+..+++|++|++++| .+++..|..+..+++|++|++++|.+++ +|..+..+++|+.|+++++
T Consensus 241 ------~-~~l~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 241 ------T-AWLLNYPGLVEVDLSYN-------ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ------C-GGGGGCTTCSEEECCSS-------CCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred ------c-HHHcCCCCccEEECCCC-------cCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 2 24666677777777774 3344556667777777777777777764 3444455556655553332
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
... .+ +.....++.|+.|++++|+++ .+| +..+++|+.|+++
T Consensus 306 ~l~----------------------~~-~~~~~~l~~L~~L~L~~N~i~-------------~~~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 306 HLL----------------------HV-ERNQPQFDRLENLYLDHNSIV-------------TLK--LSTHHTLKNLTLS 347 (390)
T ss_dssp CCC----------------------CC-GGGHHHHTTCSEEECCSSCCC-------------CCC--CCTTCCCSEEECC
T ss_pred cce----------------------ec-CccccccCcCCEEECCCCccc-------------eeC--chhhccCCEEEcC
Confidence 110 01 111234556677777777766 222 4556677777777
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|++++
T Consensus 348 ~N~~~~ 353 (390)
T 3o6n_A 348 HNDWDC 353 (390)
T ss_dssp SSCEEH
T ss_pred CCCccc
Confidence 776653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=265.73 Aligned_cols=291 Identities=22% Similarity=0.211 Sum_probs=238.8
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
...+..+++|++|++++|.+++..+ ..|..+++|++|++++|.++.. +...+..+++|++|++++|.++..++ .
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~--~ 135 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPR--G 135 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCT--T
T ss_pred hhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCCCcC---CHHHhcCCCCCCEEECCCCccCcCCH--H
Confidence 3457889999999999999998776 7899999999999999999887 33444449999999999999998776 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.+.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++. .+..+++|+.|+ +.|.++..
T Consensus 136 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l~~~------- 201 (390)
T 3o6n_A 136 IFHN--TPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLSTL------- 201 (390)
T ss_dssp TTTT--CTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCCSEE-------
T ss_pred HhcC--CCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc----ccccccccceeeccccccccc-------
Confidence 5677 8999999999999998888889998 9999999999999854 355788999999 88876653
Q ss_pred cccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
...++|++|++++|.+..+|... .++|++|++++|.+++. ..+..+ ++|++|++++|.+++
T Consensus 202 ---------~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l------~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 202 ---------AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNY------PGLVEVDLSYNELEK 262 (390)
T ss_dssp ---------ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGC------TTCSEEECCSSCCCE
T ss_pred ---------CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCC------CCccEEECCCCcCCC
Confidence 33468999999999999876533 57999999999999864 234333 689999999999984
Q ss_pred cCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhc
Q 047429 245 SLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQN 324 (466)
Q Consensus 245 ~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 324 (466)
. .|..+..+++|++|++++|++ ..++..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 263 ~----------~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 263 I----------MYHPFVKMQRLERLYISNNRL--------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp E----------ESGGGTTCSSCCEEECCSSCC--------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred c----------ChhHccccccCCEEECCCCcC--------cccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 3 356789999999999999766 345666788999999999999998 567778999999999
Q ss_pred CCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCc
Q 047429 325 GSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSG 379 (466)
Q Consensus 325 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 379 (466)
+++++... .. ....++.|+.|++++|.+..
T Consensus 324 ~L~~N~i~----------------------~~---~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIV----------------------TL---KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCC----------------------CC---CCCTTCCCSEEECCSSCEEH
T ss_pred ECCCCccc----------------------ee---CchhhccCCEEEcCCCCccc
Confidence 85544321 01 13467889999999999985
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=280.04 Aligned_cols=332 Identities=21% Similarity=0.219 Sum_probs=245.4
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
++.|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++.++ .. . +++|++|++++|.++..+.. .
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~--~-l~~L~~L~Ls~N~l~~l~~p-~ 140 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNIS---CC--P-MASLRHLDLSFNDFDVLPVC-K 140 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEEC---SC--C-CTTCSEEECCSSCCSBCCCC-G
T ss_pred hhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccC---cc--c-cccCCEEECCCCCccccCch-H
Confidence 4678999999999999999998877 88999999999999999999773 33 4 99999999999999886521 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC--cEEEccCCcc--ccCCChhhhhcCC------------------
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL--VYLDLSNNQL--QGPTPDYAFRNMT------------------ 143 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~------------------ 143 (466)
.+.. +++|++|++++|.++.. .+..+ ++| ++|++++|.+ .+..|. .+..+.
T Consensus 141 ~~~~--l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 141 EFGN--LTKLTFLGLSAAKFRQL---DLLPV-AHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp GGGG--CTTCCEEEEECSBCCTT---TTGGG-TTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCCCC
T ss_pred hhcc--cCcccEEecCCCccccC---chhhh-hhceeeEEEeecccccccccCcc-cccccCcceEEEEecCccchhhhh
Confidence 6777 99999999999999863 45555 666 9999999988 555554 444322
Q ss_pred ---------------------------------------------------------------cccccc-cccccccccc
Q 047429 144 ---------------------------------------------------------------SLASLT-SLNYITGISK 159 (466)
Q Consensus 144 ---------------------------------------------------------------~L~~L~-~~n~l~~~~~ 159 (466)
+|++|+ +.|.+++.
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-- 291 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER-- 291 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC--
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc--
Confidence 445555 55555533
Q ss_pred cCCCccccCccccccCC--------------------------CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 160 CSLPITLVRPKYAFSNV--------------------------TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 160 ~~l~~~~~~~~~~l~~l--------------------------~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
+|...... ....+ .+|++|++++|.+..++ ....+++|++|++++|.++
T Consensus 292 --ip~~~~~~--~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 292 --IDREEFTY--SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp --CCCCCCCC--CSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCC
T ss_pred --ccchhhhc--ccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccc
Confidence 33111000 00111 35777888888776532 1267889999999999999
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC-CCC
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP-KLC 292 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~-~~~ 292 (466)
+..|..+..+ ++|+.|++++|++++.. .+|..+..+++|++|++++|. +++.+|. .+.
T Consensus 367 ~~~~~~~~~l------~~L~~L~L~~N~l~~~~--------~~~~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~ 425 (562)
T 3a79_B 367 DSVFQGCSTL------KRLQTLILQRNGLKNFF--------KVALMTKNMSSLETLDVSLNS-------LNSHAYDRTCA 425 (562)
T ss_dssp TTTTTTCCSC------SSCCEEECCSSCCCBTT--------HHHHTTTTCTTCCEEECTTSC-------CBSCCSSCCCC
T ss_pred cchhhhhccc------CCCCEEECCCCCcCCcc--------cchhhhcCCCCCCEEECCCCc-------CCCccChhhhc
Confidence 8777766555 67999999999998321 334568889999999999954 4553554 578
Q ss_pred CCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 293 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
.+++|++|++++|.+++..|..+. ++|+.|+++++... .++... ..++.|++|+|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~----------------------~ip~~~-~~l~~L~~L~L 480 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM----------------------SIPKDV-THLQALQELNV 480 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC----------------------CCCTTT-TSSCCCSEEEC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc----------------------ccChhh-cCCCCCCEEEC
Confidence 889999999999999877776654 67777775544321 122222 37889999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCcccCC
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 481 ~~N~l~-------------~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 481 ASNQLK-------------SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-------------CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCC-------------CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999 45555 8899999999999999986433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=283.08 Aligned_cols=359 Identities=17% Similarity=0.199 Sum_probs=231.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|++++|.+++..+ ..|..+++|++|++++|.+++.. +..+.. +++|++|++++|.++..... .
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~ 117 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLS--SSWFGP-LSSLKYLNLMGNPYQTLGVT-S 117 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCC--HHHHTT-CTTCCEEECTTCCCSSSCSS-C
T ss_pred hhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccC--HHHhcc-CCCCcEEECCCCcccccchh-h
Confidence 4678999999999999999998877 78999999999999999999883 333555 99999999999999865321 3
Q ss_pred ccccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc-----------------------
Q 047429 86 SLVNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN----------------------- 141 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~----------------------- 141 (466)
.+.. +++|++|++++|. +....+..+..+ ++|++|++++|.+.+..|. .++.
T Consensus 118 ~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 118 LFPN--LTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp SCTT--CTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred hhhc--cCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhhHh
Confidence 5666 8889999999888 444444577777 8888888888888766665 5544
Q ss_pred -CCcccccc-cccccccccccCCCc-----cc------------------------------------------------
Q 047429 142 -MTSLASLT-SLNYITGISKCSLPI-----TL------------------------------------------------ 166 (466)
Q Consensus 142 -l~~L~~L~-~~n~l~~~~~~~l~~-----~~------------------------------------------------ 166 (466)
+++|+.|+ +.|.+++......+. .+
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 44555555 555555431100000 00
Q ss_pred --------------------------cCccccccCCCccCEEecCCCcCCCCCccc-CCCCCcCEEEeeCCcCCCccchh
Q 047429 167 --------------------------VRPKYAFSNVTSLMDLDLSKNQITGIPKSF-GDMCCLKTLKIHDNILTAKLPEL 219 (466)
Q Consensus 167 --------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~ 219 (466)
...+..+...++|+.|++++|.++.+|..+ ..+++|++|++++|.+++..|..
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 000000111245666666677666666544 46778888888888877655432
Q ss_pred ---hhhccccccccccceEecCCccccccCCCCcccccccC---cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC
Q 047429 220 ---FLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP---KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 220 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp---~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
+..+ ++|+.|++++|+++ .++ ..+..+++|++|++++|++ ..+|..+..
T Consensus 354 ~~~~~~l------~~L~~L~Ls~N~l~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l--------~~lp~~~~~ 408 (549)
T 2z81_A 354 SACKGAW------PSLQTLVLSQNHLR-----------SMQKTGEILLTLKNLTSLDISRNTF--------HPMPDSCQW 408 (549)
T ss_dssp HTCTTSS------TTCCEEECTTSCCC-----------CHHHHHHHGGGCTTCCEEECTTCCC--------CCCCSCCCC
T ss_pred hhhhhcc------ccCcEEEccCCccc-----------ccccchhhhhcCCCCCEEECCCCCC--------ccCChhhcc
Confidence 2222 46788888888776 322 2366677777777777554 256666667
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
+++|++|++++|.+++. |..+. ++|+.|+++++ +.+.. ...+.+.......+.+..++. ...++.|++|+|
T Consensus 409 ~~~L~~L~Ls~N~l~~l-~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~L 480 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVV-KTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKI 480 (549)
T ss_dssp CTTCCEEECTTSCCSCC-CTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEEC
T ss_pred cccccEEECCCCCcccc-cchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--cccCccCCEEec
Confidence 77777777777776632 32221 35555553333 22111 001111111111111222222 246899999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|++++ ..|..+..+++|+.|++++|++++..|
T Consensus 481 s~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 481 SRNQLKS------------VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCCC------------CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCC------------cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999995 334568899999999999999987655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=266.77 Aligned_cols=328 Identities=22% Similarity=0.264 Sum_probs=177.2
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
..+.+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. +. +.. +++|++|++++|.+++.++
T Consensus 60 ~l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~-~~~-l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 60 SIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADI---TP-LAN-LTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCGG--
T ss_pred cCcchhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccC---hh-hcC-CCCCCEEECCCCCCCCChH--
Confidence 34456677777777777777765432 67777777777777777766 32 444 7777777777777776532
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCC
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLP 163 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~ 163 (466)
+.. +++|++|++++|.+.+.. .+..+ ++|++|++++ .+.+ .. .+.++++|+.|+ +.|.++..
T Consensus 130 --~~~--l~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~-~~~~--~~-~~~~l~~L~~L~l~~n~l~~~------ 192 (466)
T 1o6v_A 130 --LKN--LTNLNRLELSSNTISDIS--ALSGL-TSLQQLSFGN-QVTD--LK-PLANLTTLERLDISSNKVSDI------ 192 (466)
T ss_dssp --GTT--CTTCSEEEEEEEEECCCG--GGTTC-TTCSEEEEEE-SCCC--CG-GGTTCTTCCEEECCSSCCCCC------
T ss_pred --HcC--CCCCCEEECCCCccCCCh--hhccC-CcccEeecCC-cccC--ch-hhccCCCCCEEECcCCcCCCC------
Confidence 445 777777777777766432 24444 4555555432 2221 11 355566666666 66665543
Q ss_pred ccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|++|++++|.+.+++. ++.+++|++|++++|.+++. + .+..+ ++|+.|++++|.++
T Consensus 193 -------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l------~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 193 -------SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G-TLASL------TNLTDLDLANNQIS 256 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGGGC------TTCSEEECCSSCCC
T ss_pred -------hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h-hhhcC------CCCCEEECCCCccc
Confidence 235556666666666666665433 45566666666666665542 1 12222 35666666666655
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+ ++. +..+++|++|++++|.+ ++ ++. +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 257 ~-----------~~~-~~~l~~L~~L~l~~n~l-------~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 257 N-----------LAP-LSGLTKLTELKLGANQI-------SN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp C-----------CGG-GTTCTTCSEEECCSSCC-------CC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred c-----------chh-hhcCCCCCEEECCCCcc-------Cc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 2 221 44555555555555433 11 111 4444444444444444443322 444444444
Q ss_pred cCCCCce-eeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 324 NGSSNVI-VEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 324 l~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
|+++++. .+.. .+...+.+.......+.+.+. ..+..+++|+.|++++|++++. .| +..+++
T Consensus 314 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~------------~~--~~~l~~ 376 (466)
T 1o6v_A 314 LTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL------------TP--LANLTR 376 (466)
T ss_dssp EECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC------------GG--GTTCTT
T ss_pred EECcCCcCCCch-hhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc------------ch--hhcCCC
Confidence 4432221 1100 000000000000000001111 2345678888888888888742 23 778899
Q ss_pred CCeeeccCCcCcc
Q 047429 403 LGVVNLSNNNFSG 415 (466)
Q Consensus 403 L~~L~Ls~N~l~~ 415 (466)
|+.|++++|.+++
T Consensus 377 L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 377 ITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCCEEEEC
T ss_pred CCEEeccCCcccC
Confidence 9999999999985
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=271.24 Aligned_cols=274 Identities=19% Similarity=0.159 Sum_probs=236.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.++.+ +...+..+++|++|++++|.+....+ .
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~--~ 122 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLSNLTKLDISENKIVILLD--Y 122 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSC---CTTSSTTCTTCCEEECTTSCCCEECT--T
T ss_pred HhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCcc---CcccccCCCCCCEEECCCCccccCCh--h
Confidence 4678999999999999999998877 8899999999999999999988 44544459999999999999988766 5
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.+.. +++|++|++++|.+++..+..|..+ ++|++|++++|.+++..+. .+..+++|+.|+ +.|.+... .+
T Consensus 123 ~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~----~~- 193 (477)
T 2id5_A 123 MFQD--LYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAI----RD- 193 (477)
T ss_dssp TTTT--CTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEE----CT-
T ss_pred Hccc--cccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEe----Ch-
Confidence 6777 9999999999999998888899999 9999999999999865545 899999999999 99988876 33
Q ss_pred cccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|++|++++|...+ ++.......+|++|++++|.+++..+..+..+ ++|+.|++++|.++
T Consensus 194 ------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 194 ------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL------VYLRFLNLSYNPIS 261 (477)
T ss_dssp ------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC------TTCCEEECCSSCCC
T ss_pred ------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc------cccCeeECCCCcCC
Confidence 578899999999999988766 77666667799999999999997666666555 68999999999998
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+.. +..+..+++|+.|++++| .+.+..+..+..+++|++|+|++|.+++..+..|..+++|+.
T Consensus 262 ~~~----------~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 262 TIE----------GSMLHELLRLQEIQLVGG-------QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp EEC----------TTSCTTCTTCCEEECCSS-------CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred ccC----------hhhccccccCCEEECCCC-------ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 332 245889999999999995 556677889999999999999999999888888888877733
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=276.68 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=235.9
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+++++.+++++|.+....+ ..+..+++|++|+|++|.++++. +..+.. +++|++|+|++|.+++.++ ..+..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~- 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEID--TYAFAY-AHTIQKLYMGFNAIRYLPP--HVFQN- 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCCCCT--TTTTT-
T ss_pred cCCCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCCCCCCCC--hHHhcC-CCCCCEEECCCCcCCCCCH--HHHcC-
Confidence 46788999999999987766 78899999999999999998873 334444 9999999999999998877 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|.++...+..|..+ ++|++|++++|.+.+..|. .++.+++|+.|+ +.|.+++.
T Consensus 122 -l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~------------ 186 (597)
T 3oja_B 122 -VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV------------ 186 (597)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC------------
T ss_pred -CCCCCEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc------------
Confidence 8999999999999997776677888 9999999999999987777 899999999999 99988875
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+..+++|+.|++++|.+++++ ..++|+.|++++|.++...+. .+++|+.|++++|.+++
T Consensus 187 --~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~---------~~~~L~~L~L~~n~l~~----- 246 (597)
T 3oja_B 187 --DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTD----- 246 (597)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECS---------CCSCCCEEECCSSCCCC-----
T ss_pred --ChhhhhhhhhhhcccCcccccc----CCchhheeeccCCcccccccc---------cCCCCCEEECCCCCCCC-----
Confidence 2455678888888888776632 345688888888877643332 12468888888887763
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+..+..+++|+.|++++| .+.+..|..++.+++|++|+|++|.+++ +|..+..+++|+.|+++++
T Consensus 247 -------~~~l~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 247 -------TAWLLNYPGLVEVDLSYN-------ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp -------CGGGGGCTTCSEEECCSS-------CCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred -------ChhhccCCCCCEEECCCC-------ccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 234667778888888774 4455667777778888888888888775 4555666777777775443
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
... .+ +..+..++.|+.|+|++|.++ .+| +..+++|+.|+++
T Consensus 312 ~l~----------------------~i-~~~~~~l~~L~~L~L~~N~l~-------------~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 312 HLL----------------------HV-ERNQPQFDRLENLYLDHNSIV-------------TLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp CCC----------------------CC-GGGHHHHTTCSEEECCSSCCC-------------CCC--CCTTCCCSEEECC
T ss_pred CCC----------------------cc-CcccccCCCCCEEECCCCCCC-------------CcC--hhhcCCCCEEEee
Confidence 221 11 122356778899999999988 232 6678899999999
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|++.+
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 998875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-32 Score=282.32 Aligned_cols=289 Identities=20% Similarity=0.256 Sum_probs=241.8
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhc
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 115 (466)
.+.+++.|++++|.+..+ +..++..+++|++|++++|.+++.++ ..+.. +++|++|++++|.+++..+..|..
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDT--YAFAY--AHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTTSCCCEECT--TTTTT--CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCCCCCCCCCh--HHhcC--CCCCCEEECCCCcCCCCCHHHHcC
Confidence 367899999999999888 55555449999999999999998776 57777 999999999999999988888999
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 194 (466)
+ ++|++|+|++|.+.+..+. .|+++++|+.|+ +.|.+++. .| ..+..+++|++|++++|.+++++
T Consensus 122 l-~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 122 V-PLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERI----ED-------DTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp C-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBC----CT-------TTTTTCTTCCEEECTTSCCSBCC-
T ss_pred C-CCCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCcCCCC----Ch-------hhhhcCCcCcEEECcCCCCCCcC-
Confidence 9 9999999999999955554 789999999999 99999886 45 67899999999999999999864
Q ss_pred ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCC
Q 047429 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274 (466)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n 274 (466)
+..+++|++|++++|.+++.. .+.+|+.|++++|.++ .+|..+ .++|+.|++++|
T Consensus 188 -~~~l~~L~~L~l~~n~l~~l~-----------~~~~L~~L~ls~n~l~-----------~~~~~~--~~~L~~L~L~~n 242 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLLSTLA-----------IPIAVEELDASHNSIN-----------VVRGPV--NVELTILKLQHN 242 (597)
T ss_dssp -GGGCTTCSEEECCSSCCSEEE-----------CCTTCSEEECCSSCCC-----------EEECSC--CSCCCEEECCSS
T ss_pred -hhhhhhhhhhhcccCcccccc-----------CCchhheeeccCCccc-----------cccccc--CCCCCEEECCCC
Confidence 567889999999999987532 1257999999999998 333332 268999999997
Q ss_pred eeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeeeccCCCCcccccceeeee
Q 047429 275 QLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQLIDDPEFDYQDRALLVW 353 (466)
Q Consensus 275 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~ 353 (466)
.+ + .+..+..+++|++|+|++|.+++..|..|+++++|+.|+++++. ...
T Consensus 243 ~l-------~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 293 (597)
T 3oja_B 243 NL-------T--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-------------------- 293 (597)
T ss_dssp CC-------C--CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--------------------
T ss_pred CC-------C--CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--------------------
Confidence 65 3 35778999999999999999999999999999999999965543 221
Q ss_pred ecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 354 KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
+.....+++|+.|+|++|.++ .+|.++..+++|++|+|++|.+++.
T Consensus 294 ----~~~~~~l~~L~~L~Ls~N~l~-------------~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 294 ----NLYGQPIPTLKVLDLSHNHLL-------------HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp ----ECSSSCCTTCCEEECCSSCCC-------------CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ----CcccccCCCCcEEECCCCCCC-------------ccCcccccCCCCCEEECCCCCCCCc
Confidence 112245789999999999999 5566678889999999999999843
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-31 Score=263.45 Aligned_cols=341 Identities=17% Similarity=0.120 Sum_probs=232.3
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.++..++++++|++|++++|.+++. + .+..+++|++|++++|.++++ + +.. +++|++|++++|.+++.+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~---~--~~~-l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL---D--LSQ-NTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC---C--CTT-CTTCSEEECCSSCCSCCC--
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE---c--ccc-CCCCCEEECcCCCCceee--
Confidence 4455678899999999999999875 3 588999999999999999887 3 444 999999999999998752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
+.. +++|++|++++|.+++. + +..+ ++|++|++++|.+++. .++.+++|+.|+ +.|...+.
T Consensus 102 ---~~~--l~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~----- 163 (457)
T 3bz5_A 102 ---VTP--LTKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK----- 163 (457)
T ss_dssp ---CTT--CTTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCC-----
T ss_pred ---cCC--CCcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee----ccccCCcCCEEECCCCCcccc-----
Confidence 556 89999999999999874 3 7777 9999999999999864 367888999999 77743332
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
..+..+++|++|++++|.++++| +..+++|+.|++++|.+++.. +..+ ++|+.|++++|++
T Consensus 164 --------~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~---l~~l------~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 164 --------LDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD---LNQN------IQLTFLDCSSNKL 224 (457)
T ss_dssp --------CCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC---CTTC------TTCSEEECCSSCC
T ss_pred --------cccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec---cccC------CCCCEEECcCCcc
Confidence 23667888999999999998876 778888999999999888652 2222 5788999999988
Q ss_pred cccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-------CccEEEccCCCCCCCchhhh
Q 047429 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-------MLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 243 ~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~ 315 (466)
+ .+| +..+++|++|++++|++ ++..+..+..++ +|+.|++++|.+.+.+| +
T Consensus 225 ~-----------~ip--~~~l~~L~~L~l~~N~l-------~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 225 T-----------EID--VTPLTQLTYFDCSVNPL-------TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp S-----------CCC--CTTCTTCSEEECCSSCC-------SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred c-----------ccC--ccccCCCCEEEeeCCcC-------CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 8 444 66778888888888544 333333333333 44555555555555555 4
Q ss_pred hhhhhhhhcCCCCcee-e-eee--------eccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHH
Q 047429 316 NNLSAMVQNGSSNVIV-E-YRI--------QLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI 385 (466)
Q Consensus 316 ~~l~~L~~l~~~n~~~-~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i 385 (466)
+.+++|+.|+++++.. + .+. .+...+.+.........+.++ .++.++.|+.|++++|++++ +|. +
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l~~-L 357 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-FSS-V 357 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-CTT-G
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-ccc-c
Confidence 5667777777544421 1 110 011111111111111112222 25677888888888888884 331 1
Q ss_pred Hhh--ccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 386 TSL--LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 386 ~~l--~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..+ ....+- +...+..|+.+++++|+++|.||..
T Consensus 358 ~~L~l~~n~l~-g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 358 GKIPALNNNFE-AEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGSSGGGTSEE-EEEEEEECCCBCCBTTBEEEECCTT
T ss_pred ccccccCCcEE-ecceeeecCccccccCcEEEEcChh
Confidence 111 000000 0134466788899999999999875
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=274.95 Aligned_cols=350 Identities=20% Similarity=0.198 Sum_probs=243.1
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
.+.+|.++++|++|||++|.|++..+ ..|.++++|++|+|++|+++.+ +...+.++++|++|++++|.++.+++
T Consensus 68 ~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L~~L~Ls~N~l~~l~~-- 141 (635)
T 4g8a_A 68 GSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLEN-- 141 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTCCEEECTTSCCCCSTT--
T ss_pred CHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCCCEEECCCCcCCCCCh--
Confidence 34678999999999999999998877 8899999999999999999888 44555559999999999999998877
Q ss_pred cccccCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc----------------
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS---------------- 147 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~---------------- 147 (466)
..+.. +++|++|++++|.++.. .|..+..+ ++|++|++++|.+++..+. .+..+.+++.
T Consensus 142 ~~~~~--L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 142 FPIGH--LKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp CCCTT--CTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred hhhhc--CcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccc-cccchhhhhhhhhhhhcccCcccccC
Confidence 56778 99999999999999764 56778888 9999999999998765444 4433221110
Q ss_pred -----------cc-ccc---------------------------------------------------------------
Q 047429 148 -----------LT-SLN--------------------------------------------------------------- 152 (466)
Q Consensus 148 -----------L~-~~n--------------------------------------------------------------- 152 (466)
+. ..|
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence 00 000
Q ss_pred -----------------------------------------ccccccccCCCc--------cccCccccccCCCccCEEe
Q 047429 153 -----------------------------------------YITGISKCSLPI--------TLVRPKYAFSNVTSLMDLD 183 (466)
Q Consensus 153 -----------------------------------------~l~~~~~~~l~~--------~~~~~~~~l~~l~~L~~L~ 183 (466)
.+.......++. ...........+++|+.|+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 000000000000 0000111233577899999
Q ss_pred cCCCcCCC---CCcccCCCCCcCEEEeeCCcCCCccchhhhhcc-------------------ccccccccceEecCCcc
Q 047429 184 LSKNQITG---IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS-------------------AGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 184 Ls~n~l~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------------------~~~~~~~L~~L~L~~n~ 241 (466)
+++|.+.. .+..+..+.+|+++++..|......+. +.... ......+++.+++++|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccccccccccccccc
Confidence 99998764 334444556666666666654422211 11110 00001345555555555
Q ss_pred ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+.+ ..|..+..+++++.|++++|.+ ..+..|..+..+++|++|||++|++++..|..|+++++|
T Consensus 457 l~~----------~~~~~~~~~~~L~~L~Ls~N~~------~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 457 TRV----------AFNGIFNGLSSLEVLKMAGNSF------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp CEE----------CCTTTTTTCTTCCEEECTTCEE------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccc----------ccccccccchhhhhhhhhhccc------ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 542 3344567778888888888643 334577889999999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCC-
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQL- 400 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l- 400 (466)
+.|+++++-. .++++..+..+++|++|||++|++++ ..|.++..+
T Consensus 521 ~~L~Ls~N~l----------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~l~~l~ 566 (635)
T 4g8a_A 521 QVLNMSHNNF----------------------FSLDTFPYKCLNSLQVLDYSLNHIMT------------SKKQELQHFP 566 (635)
T ss_dssp CEEECTTSCC----------------------CBCCCGGGTTCTTCCEEECTTSCCCB------------CCSSCTTCCC
T ss_pred CEEECCCCcC----------------------CCCChhHHhCCCCCCEEECCCCcCCC------------CCHHHHHhhh
Confidence 9999655432 23445556778999999999999995 445567777
Q ss_pred CCCCeeeccCCcCcc
Q 047429 401 SHLGVVNLSNNNFSG 415 (466)
Q Consensus 401 ~~L~~L~Ls~N~l~~ 415 (466)
++|++|+|++|++.+
T Consensus 567 ~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 567 SSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTCCBCC
T ss_pred CcCCEEEeeCCCCcc
Confidence 689999999999974
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=261.32 Aligned_cols=327 Identities=22% Similarity=0.321 Sum_probs=247.3
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
..+++++.|+++++.+... ..+..+++|++|++++|.++.. +. +.. +++|++|++++|.+....+ +..
T Consensus 43 ~~l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~Ls~n~l~~~---~~-~~~-l~~L~~L~l~~n~l~~~~~----~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI---TP-LKN-LTKLVDILMNNNQIADITP----LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCGG----GTT
T ss_pred hHhccccEEecCCCCCccC---cchhhhcCCCEEECCCCccCCc---hh-hhc-cccCCEEECCCCccccChh----hcC
Confidence 3478999999999998864 3488899999999999999987 43 555 9999999999999987654 566
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+ .+ .+..+++|+.|+ . +.+...
T Consensus 111 --l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~~~~~~----------- 170 (466)
T 1o6v_A 111 --LTNLTGLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-NQVTDL----------- 170 (466)
T ss_dssp --CTTCCEEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-ESCCCC-----------
T ss_pred --CCCCCEEECCCCCCCCChH--HcCC-CCCCEEECCCCccCC-Ch--hhccCCcccEeecC-CcccCc-----------
Confidence 9999999999999987644 7888 999999999999885 33 588899999999 5 444432
Q ss_pred ccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.++
T Consensus 171 --~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~l~~n~l~----- 234 (466)
T 1o6v_A 171 --KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGIL------TNLDELSLNGNQLK----- 234 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGC------TTCCEEECCSSCCC-----
T ss_pred --hhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--cccc------CCCCEEECCCCCcc-----
Confidence 35888999999999999998875 47889999999999999987665 2222 67999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCC
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n 328 (466)
.++ .+..+++|++|++++|.+ .+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 235 ------~~~-~l~~l~~L~~L~l~~n~l-------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 235 ------DIG-TLASLTNLTDLDLANNQI-------SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296 (466)
T ss_dssp ------CCG-GGGGCTTCSEEECCSSCC-------CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred ------cch-hhhcCCCCCEEECCCCcc-------ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence 333 477899999999999665 33322 8899999999999999997655 88999999998655
Q ss_pred ceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeec
Q 047429 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNL 408 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~L 408 (466)
+.......+...+.+.......+.+.+..+ ...+++|+.|++++|++++ + ..+..+++|+.|++
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-------------V-SSLANLTNINWLSA 360 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-------------C-GGGTTCTTCCEEEC
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-------------c-hhhccCCCCCEEeC
Confidence 432210001111111111111111122222 4566667777777776662 2 25888999999999
Q ss_pred cCCcCcccCC
Q 047429 409 SNNNFSGKIP 418 (466)
Q Consensus 409 s~N~l~~~ip 418 (466)
++|++++..|
T Consensus 361 ~~n~l~~~~~ 370 (466)
T 1o6v_A 361 GHNQISDLTP 370 (466)
T ss_dssp CSSCCCBCGG
T ss_pred CCCccCccch
Confidence 9999997766
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=258.05 Aligned_cols=307 Identities=20% Similarity=0.124 Sum_probs=197.4
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.....++.+++|++|++++|.+++.. +..+++|++|++++|.+++. + +.. +++|++|++++|.+++.+
T Consensus 55 ~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~---~--~~~-l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 55 TDMTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL---D--VTP-LTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp CCCTTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC---C--CTT-CTTCCEEECCSSCCSCCC--
T ss_pred ccChhhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee---e--cCC-CCcCCEEECCCCcCCeec--
Confidence 34446889999999999999998752 78899999999999999887 2 444 999999999999988752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
+.. +++|++|++++|.+++. .+..+ ++|++|++++|...+.. .++.+++|+.|+ +.|.+++.+
T Consensus 123 ---~~~--l~~L~~L~l~~N~l~~l---~l~~l-~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---- 186 (457)
T 3bz5_A 123 ---VSQ--NPLLTYLNCARNTLTEI---DVSHN-TQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---- 186 (457)
T ss_dssp ---CTT--CTTCCEEECTTSCCSCC---CCTTC-TTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC----
T ss_pred ---CCC--CCcCCEEECCCCcccee---ccccC-CcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec----
Confidence 455 88999999999999874 26667 88899999988654444 356788888888 888877641
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
+..+++|+.|++++|.+++++ +..+++|++|++++|++++. | +..+ ++|+.|++++|++
T Consensus 187 ----------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l------~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 ----------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPL------TQLTYFDCSVNPL 245 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTC------TTCSEEECCSSCC
T ss_pred ----------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--cccc------CCCCEEEeeCCcC
Confidence 455666777777777766652 56666777777777766652 3 2222 4566666666666
Q ss_pred cccCCCC---------------------cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC--------CCCC
Q 047429 243 SGSLPGV---------------------TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP--------KLCS 293 (466)
Q Consensus 243 ~~~~~~~---------------------~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~--------~~~~ 293 (466)
++..+.. ..+.+.+| +..+++|+.|++++|.. .+.+|. .++.
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~-------l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ-------LYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT-------CCEEECTTCCCSCCCCTT
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcc-------cceeccCCCcceEechhh
Confidence 6432110 01112222 23455666666665432 222221 2556
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLS 373 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 373 (466)
+++|++|++++|++++. + ++++++|+.|+++++... . -+.+.........+.+. ..+..+..++++
T Consensus 317 ~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~---~---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ---D---FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC---B---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC---C---ccccccccccCCcEEec-----ceeeecCccccc
Confidence 67777888888887764 2 777777777775443221 1 01111111111111111 244567788899
Q ss_pred CCcCCcCCc
Q 047429 374 DNNLSGKIP 382 (466)
Q Consensus 374 ~N~l~~~ip 382 (466)
+|+++|.||
T Consensus 383 ~N~l~g~ip 391 (457)
T 3bz5_A 383 NNSLTIAVS 391 (457)
T ss_dssp TTBEEEECC
T ss_pred cCcEEEEcC
Confidence 999887554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=246.06 Aligned_cols=299 Identities=19% Similarity=0.168 Sum_probs=231.8
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+++.++++++.++.. | ..+ .+.+++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 31 c~l~~l~~~~~~l~~l-p-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV-P-KDL--PPDTALLDLQNNKITEIK--DGDFKN-LKNLHTLILINNKISKISP--GAFAP--L 99 (330)
T ss_dssp EETTEEECTTSCCCSC-C-CSC--CTTCCEEECCSSCCCCBC--TTTTTT-CTTCCEEECCSSCCCCBCT--TTTTT--C
T ss_pred CCCeEEEecCCCcccc-C-ccC--CCCCeEEECCCCcCCEeC--hhhhcc-CCCCCEEECCCCcCCeeCH--HHhcC--C
Confidence 3789999999988754 3 222 368999999999998873 223444 9999999999999998766 56777 8
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++. .|..+. ++|++|++++|.+.+..+. .+.++++|+.|+ +.|.++..+. .+ .
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~-------~ 165 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGI--EN-------G 165 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC---TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGB--CT-------T
T ss_pred CCCCEEECCCCcCCc-cChhhc---ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCc--Ch-------h
Confidence 999999999999984 444433 6899999999999866655 889999999999 8888765321 33 5
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+..+++|++|++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~----- 232 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSISAVD----- 232 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC------TTCCEEECCSSCCCEEC-----
T ss_pred hccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCC------CCCCEEECCCCcCceeC-----
Confidence 78889999999999999999887654 789999999999988777776665 67999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
+..+..+++|++|++++|++ ..+|..+..+++|++|++++|.+++..+..|......
T Consensus 233 -----~~~~~~l~~L~~L~L~~N~l--------~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~---------- 289 (330)
T 1xku_A 233 -----NGSLANTPHLRELHLNNNKL--------VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN---------- 289 (330)
T ss_dssp -----TTTGGGSTTCCEEECCSSCC--------SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC----------
T ss_pred -----hhhccCCCCCCEEECCCCcC--------ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccc----------
Confidence 23578889999999999766 4788889999999999999999998777666543111
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
.....++.|++++|.+... +..|..|..++.++.++|++|
T Consensus 290 ------------------------------~~~~~l~~l~l~~N~~~~~----------~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 ------------------------------TKKASYSGVSLFSNPVQYW----------EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ------------------------------TTSCCCSEEECCSSSSCGG----------GSCGGGGTTCCCGGGEEC---
T ss_pred ------------------------------cccccccceEeecCccccc----------ccCccccccccceeEEEeccc
Confidence 1235568999999998621 133667899999999999998
Q ss_pred c
Q 047429 412 N 412 (466)
Q Consensus 412 ~ 412 (466)
+
T Consensus 330 ~ 330 (330)
T 1xku_A 330 K 330 (330)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.01 Aligned_cols=290 Identities=24% Similarity=0.263 Sum_probs=236.6
Q ss_pred ccccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc
Q 047429 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY 82 (466)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 82 (466)
+.+...+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. + .+.. +++|++|++++|.+...++
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~---~-~~~~-l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI---S-ALQN-LTNLRELYLNEDNISDISP 127 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC---G-GGTT-CTTCSEEECTTSCCCCCGG
T ss_pred cccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc---h-HHcC-CCcCCEEECcCCcccCchh
Confidence 4455668899999999999999986532 89999999999999999886 3 3445 9999999999999987643
Q ss_pred cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
+.. +++|++|++++|......+ .+..+ ++|++|++++|.+.+.. .+..+++|+.|+ +.|.+.+.
T Consensus 128 ----~~~--l~~L~~L~l~~n~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~---- 192 (347)
T 4fmz_A 128 ----LAN--LTKMYSLNLGANHNLSDLS-PLSNM-TGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDI---- 192 (347)
T ss_dssp ----GTT--CTTCCEEECTTCTTCCCCG-GGTTC-TTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCC----
T ss_pred ----hcc--CCceeEEECCCCCCccccc-chhhC-CCCcEEEecCCCcCCch---hhccCCCCCEEEccCCccccc----
Confidence 556 8999999999996654433 47788 99999999999987433 478899999999 99988774
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
..+..+++|+.|++++|.+..++. +..+++|++|++++|.+++..+ +... ++|++|++++|.
T Consensus 193 ---------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~l~~n~ 254 (347)
T 4fmz_A 193 ---------SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANL------SQLTWLEIGTNQ 254 (347)
T ss_dssp ---------GGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC------TTCCEEECCSSC
T ss_pred ---------ccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcC------CCCCEEECCCCc
Confidence 347889999999999999998655 7889999999999999986655 3333 689999999999
Q ss_pred ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
++ .+ ..+..+++|++|++++|.+ + .+ +.+..+++|++|++++|.+++..|..|+++++|
T Consensus 255 l~-----------~~-~~~~~l~~L~~L~l~~n~l-------~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 255 IS-----------DI-NAVKDLTKLKMLNVGSNQI-------S-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp CC-----------CC-GGGTTCTTCCEEECCSSCC-------C-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred cC-----------CC-hhHhcCCCcCEEEccCCcc-------C-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 98 43 3478899999999999766 2 22 468899999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+.|+++++... ...+ ...++.|++|++++|.++
T Consensus 314 ~~L~L~~n~l~----------------------~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHIT----------------------DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCC----------------------CCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccc----------------------cccC--hhhhhccceeehhhhccc
Confidence 99986554321 1222 567899999999999986
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=246.14 Aligned_cols=297 Identities=22% Similarity=0.226 Sum_probs=162.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
+++.++++++.++.. | ..+ .++|++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. ++
T Consensus 34 ~l~~l~~~~~~l~~i-p-~~~--~~~l~~L~l~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-P-KEI--SPDTTLLDLQNNDISELR--KDDFKG-LQHLYALVLVNNKISKIHE--KAFSP--LR 102 (332)
T ss_dssp ETTEEECCSSCCSSC-C-SCC--CTTCCEEECCSSCCCEEC--TTTTTT-CTTCCEEECCSSCCCEECG--GGSTT--CT
T ss_pred cCCEEECCCCCcccc-C-CCC--CCCCeEEECCCCcCCccC--HhHhhC-CCCCcEEECCCCccCccCH--hHhhC--cC
Confidence 456666666665532 2 112 245666666666665542 222333 6666666666666665544 34555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|.++. .|..+. ++|++|++++|.+.+..+. .+..+++|+.|+ +.|.++..+. .+ ..
T Consensus 103 ~L~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~-------~~ 168 (332)
T 2ft3_A 103 KLQKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGF--EP-------GA 168 (332)
T ss_dssp TCCEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGS--CT-------TS
T ss_pred CCCEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCC--Cc-------cc
Confidence 66666666666653 232222 4566666666666544333 556666666666 5555543111 22 34
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+..+ +|++|++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l------~~L~~L~L~~N~l~~~~------ 233 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY------SKLYRLGLGHNQIRMIE------ 233 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC------TTCSCCBCCSSCCCCCC------
T ss_pred ccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCC------CCCCEEECCCCcCCcCC------
Confidence 4444 56666666666666555433 456666666666665554444433 45666666666665221
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceee
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE 332 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~ 332 (466)
+..+..+++|++|++++|++ ..+|..+..+++|++|++++|.+++..+..|.....
T Consensus 234 ----~~~~~~l~~L~~L~L~~N~l--------~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------ 289 (332)
T 2ft3_A 234 ----NGSLSFLPTLRELHLDNNKL--------SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------ 289 (332)
T ss_dssp ----TTGGGGCTTCCEEECCSSCC--------CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------
T ss_pred ----hhHhhCCCCCCEEECCCCcC--------eecChhhhcCccCCEEECCCCCCCccChhHcccccc------------
Confidence 12355566666666666444 245555666666666666666666544444433210
Q ss_pred eeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCc
Q 047429 333 YRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~ 412 (466)
......++.|++++|.+.. .+..|.+|..+++|+.+++++|+
T Consensus 290 ----------------------------~~~~~~l~~L~l~~N~~~~----------~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 ----------------------------GVKRAYYNGISLFNNPVPY----------WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----------------------------CSSSCCBSEEECCSSSSCG----------GGSCGGGGTTBCCSTTEEC----
T ss_pred ----------------------------ccccccccceEeecCcccc----------cccCcccccccchhhhhhccccc
Confidence 0124556889999998761 11345678889999999998884
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=260.73 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCC-------------CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcC
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNK-------------LTSLSLQGLDLREATDWLQVVITGLPSLRELDLS 73 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 73 (466)
+.++++++|++|++++|.+.+..| ..++.+.+ +++|++++|++++++. . .++|++|+++
T Consensus 28 ~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~------~-~~~L~~L~l~ 99 (454)
T 1jl5_A 28 VEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE------L-PPHLESLVAS 99 (454)
T ss_dssp ------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS------C-CTTCSEEECC
T ss_pred hhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhccCCCEEEecCCccccCCC------C-cCCCCEEEcc
Confidence 456677777777777777766555 55555554 3667777776666521 1 3566666666
Q ss_pred CCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 74 SSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 74 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
+|.+++++. . .++|++|++++|.+++. +. ..++|++|++++|.+++ +| .++++++|++|+ +.|
T Consensus 100 ~n~l~~lp~------~--~~~L~~L~l~~n~l~~l-~~----~~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 100 CNSLTELPE------L--PQSLKSLLVDNNNLKAL-SD----LPPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SSCCSSCCC------C--CTTCCEEECCSSCCSCC-CS----CCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSS
T ss_pred CCcCCcccc------c--cCCCcEEECCCCccCcc-cC----CCCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCC
Confidence 666665432 1 34556666666655532 11 11455666666665553 33 355555666666 555
Q ss_pred ccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 153 YITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 153 ~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
.+++. | .. ..+|++|++++|.++++| .+..+++|++|++++|.++
T Consensus 164 ~l~~l-----p-------~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 164 SLKKL-----P-------DL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSCC-----C-------CC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred cCccc-----C-------CC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 55442 2 11 124555555555555444 3445555555555555544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=248.78 Aligned_cols=250 Identities=30% Similarity=0.458 Sum_probs=168.6
Q ss_pred CCCCEEEcCCCCCCC--CCccccccccCCCCCccEEEcCC-CCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc
Q 047429 65 PSLRELDLSSSAPPK--INYRSHSLVNSSSSSLTHLHLSL-CGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN 141 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~--~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~ 141 (466)
.+++.|++++|.+++ ..+ ..+.. +++|++|++++ |.+.+..|..+..+ ++|++|++++|.+.+..|. .+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~--~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~-~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP--SSLAN--LPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPD-FLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC--GGGGG--CTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCG-GGGG
T ss_pred ceEEEEECCCCCccCCcccC--hhHhC--CCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCH-HHhC
Confidence 456666666666654 233 34555 66666666663 66665566666666 6666666666666655665 6666
Q ss_pred CCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCC-CcCEEEeeCCcCCCccch
Q 047429 142 MTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMC-CLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 142 l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~-~L~~L~L~~n~l~~~~~~ 218 (466)
+++|++|+ +.|.+++. +| ..+..+++|++|++++|.+++ +|..+..++ +|++|++++|.+++..|.
T Consensus 124 l~~L~~L~Ls~N~l~~~----~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGT----LP-------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CTTCCEEECCSSEEESC----CC-------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCCCCEEeCCCCccCCc----CC-------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 66666666 66666554 44 566777778888888887774 777777776 788888888887777776
Q ss_pred hhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 219 LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
.+... .|+.|++++|.+++. .|..+..+++|++|++++|.+ ++..+ .+..+++|+
T Consensus 193 ~~~~l-------~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l-------~~~~~-~~~~l~~L~ 247 (313)
T 1ogq_A 193 TFANL-------NLAFVDLSRNMLEGD----------ASVLFGSDKNTQKIHLAKNSL-------AFDLG-KVGLSKNLN 247 (313)
T ss_dssp GGGGC-------CCSEEECCSSEEEEC----------CGGGCCTTSCCSEEECCSSEE-------CCBGG-GCCCCTTCC
T ss_pred HHhCC-------cccEEECcCCcccCc----------CCHHHhcCCCCCEEECCCCce-------eeecC-cccccCCCC
Confidence 66554 278888888877743 345577778888888887555 33333 366777888
Q ss_pred EEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 299 VLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 299 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+|++++|.+++.+|..|..+++| ++|+|++|+++
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L----------------------------------------------~~L~Ls~N~l~ 281 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFL----------------------------------------------HSLNVSFNNLC 281 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTC----------------------------------------------CEEECCSSEEE
T ss_pred EEECcCCcccCcCChHHhcCcCC----------------------------------------------CEEECcCCccc
Confidence 88888888877777777666555 77888888888
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCc-Ccc
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN-FSG 415 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~-l~~ 415 (466)
|.+| . ...+++|+.+++++|+ ++|
T Consensus 282 ~~ip------------~-~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIP------------Q-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECC------------C-STTGGGSCGGGTCSSSEEES
T ss_pred ccCC------------C-CccccccChHHhcCCCCccC
Confidence 6444 3 2667788888888887 554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=236.46 Aligned_cols=258 Identities=19% Similarity=0.240 Sum_probs=214.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+.+++|++++|.+++..+ ..|..+++|++|++++|.++.+. +..+.. +++|++|++++|.++.++.. + .
T Consensus 52 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~l~~~---~----~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKIS--PGAFAP-LVKLERLYLSKNQLKELPEK---M----P 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBC--TTTTTT-CTTCCEEECCSSCCSBCCSS---C----C
T ss_pred CCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeC--HHHhcC-CCCCCEEECCCCcCCccChh---h----c
Confidence 689999999999998766 78999999999999999998873 334555 99999999999999876541 1 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc--CCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG--PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.. ..+. .+.++++|+.|+ +.|.++.. |
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l-----~------ 187 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITTI-----P------ 187 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCSC-----C------
T ss_pred ccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCccccC-----C------
Confidence 689999999999998888889999 999999999999863 5566 889999999999 99988863 3
Q ss_pred cccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+ .++|++|++++|.+++ .+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++
T Consensus 188 -~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~----- 253 (330)
T 1xku_A 188 -QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT------PHLRELHLNNNKLV----- 253 (330)
T ss_dssp -SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS------TTCCEEECCSSCCS-----
T ss_pred -ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC------CCCCEEECCCCcCc-----
Confidence 222 2789999999999998 46789999999999999999998777666555 68999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC------CCCCccEEEccCCCCCC--Cchhhhhhhhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC------SSPMLQVLDFSHNNISG--MVPTCLNNLSA 320 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~------~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~ 320 (466)
.+|..+..+++|++|++++|.+ ++..+..|+ ..+.|+.|++++|.+.. ..|..|..+..
T Consensus 254 ------~lp~~l~~l~~L~~L~l~~N~i-------~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 254 ------KVPGGLADHKYIQVVYLHNNNI-------SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp ------SCCTTTTTCSSCCEEECCSSCC-------CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred ------cCChhhccCCCcCEEECCCCcC-------CccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 7888899999999999999665 443344443 24789999999999863 55666666655
Q ss_pred h
Q 047429 321 M 321 (466)
Q Consensus 321 L 321 (466)
+
T Consensus 321 l 321 (330)
T 1xku_A 321 R 321 (330)
T ss_dssp G
T ss_pred e
Confidence 5
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-30 Score=243.23 Aligned_cols=243 Identities=28% Similarity=0.451 Sum_probs=206.6
Q ss_pred CCccEEEcCCCCCCc--hhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 93 SSLTHLHLSLCGLSN--SAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
.++++|++++|.+++ ..|..+..+ ++|++|++++ |.+.+.+|. .++++++|++|+ +.|.+++. +|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~----~p----- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA----IP----- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE----CC-----
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCc----CC-----
Confidence 589999999999998 788999999 9999999995 999989998 899999999999 99999866 66
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+++..|..+..+ ++.|+.|++++|++++.
T Consensus 119 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~~L~~L~L~~N~l~~~-- 189 (313)
T 1ogq_A 119 --DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-----SKLFTSMTISRNRLTGK-- 189 (313)
T ss_dssp --GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----CTTCCEEECCSSEEEEE--
T ss_pred --HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-----hhcCcEEECcCCeeecc--
Confidence 778999999999999999996 88899999999999999999998888776655 12799999999999854
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 327 (466)
+|..+..++ |++|++++|.+ ++..|..+..+++|++|++++|.+++.+|. +..
T Consensus 190 --------~~~~~~~l~-L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~---------- 242 (313)
T 1ogq_A 190 --------IPPTFANLN-LAFVDLSRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL---------- 242 (313)
T ss_dssp --------CCGGGGGCC-CSEEECCSSEE-------EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC----------
T ss_pred --------CChHHhCCc-ccEEECcCCcc-------cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc----------
Confidence 445677776 99999999554 567888899999999999999999866554 433
Q ss_pred CceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeee
Q 047429 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVN 407 (466)
Q Consensus 328 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~ 407 (466)
+++|++|+|++|++++ .+|.++..+++|++|+
T Consensus 243 ------------------------------------l~~L~~L~Ls~N~l~~------------~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 243 ------------------------------------SKNLNGLDLRNNRIYG------------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp ------------------------------------CTTCCEEECCSSCCEE------------CCCGGGGGCTTCCEEE
T ss_pred ------------------------------------cCCCCEEECcCCcccC------------cCChHHhcCcCCCEEE
Confidence 3455999999999996 5566788999999999
Q ss_pred ccCCcCcccCCCCCCcccccccc
Q 047429 408 LSNNNFSGKIPSSIPLQTFEASA 430 (466)
Q Consensus 408 Ls~N~l~~~ip~~~~~~~~~~~~ 430 (466)
+++|+++|.+|+...+..++...
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGG
T ss_pred CcCCcccccCCCCccccccChHH
Confidence 99999999999986555555443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=236.40 Aligned_cols=258 Identities=19% Similarity=0.246 Sum_probs=214.7
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+. +..+.. +++|++|++++|.++.++.. . .
T Consensus 54 ~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~~--~-----~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKIH--EKAFSP-LRKLQKLYISKNHLVEIPPN--L-----P 122 (332)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC--GGGSTT-CTTCCEEECCSSCCCSCCSS--C-----C
T ss_pred CCCeEEECCCCcCCccCH-hHhhCCCCCcEEECCCCccCccC--HhHhhC-cCCCCEEECCCCcCCccCcc--c-----c
Confidence 689999999999998776 78999999999999999998873 444545 99999999999999976652 1 3
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc--CCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG--PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.++...+..+..+ ++|++|++++|.+.. ..+. .+..+ +|+.|+ +.|.+++. |
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~l-----~------ 188 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTGI-----P------ 188 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSSC-----C------
T ss_pred ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCcc-----C------
Confidence 689999999999998777788888 999999999999963 5555 77777 899999 99998874 3
Q ss_pred cccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+ .++|++|++++|.+++++ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+++
T Consensus 189 -~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~----- 254 (332)
T 2ft3_A 189 -KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL------PTLRELHLDNNKLS----- 254 (332)
T ss_dssp -SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC------TTCCEEECCSSCCC-----
T ss_pred -ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC------CCCCEEECCCCcCe-----
Confidence 222 278999999999999954 689999999999999999998887776665 68999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC------CCCccEEEccCCCCC--CCchhhhhhhhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS------SPMLQVLDFSHNNIS--GMVPTCLNNLSA 320 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~ 320 (466)
.+|..+..+++|++|++++|.+ ++..+..++. .+.|+.|++++|.+. +..|..|..++.
T Consensus 255 ------~lp~~l~~l~~L~~L~l~~N~l-------~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 255 ------RVPAGLPDLKLLQVVYLHTNNI-------TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp ------BCCTTGGGCTTCCEEECCSSCC-------CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred ------ecChhhhcCccCCEEECCCCCC-------CccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 7888899999999999999655 4444444443 467999999999987 567777777766
Q ss_pred hh
Q 047429 321 MV 322 (466)
Q Consensus 321 L~ 322 (466)
|+
T Consensus 322 L~ 323 (332)
T 2ft3_A 322 RL 323 (332)
T ss_dssp ST
T ss_pred hh
Confidence 63
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=245.73 Aligned_cols=222 Identities=20% Similarity=0.126 Sum_probs=143.3
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC-------------CCCEEE
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP-------------SLRELD 71 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-------------~L~~L~ 71 (466)
.|+.+ +.+.|++|++++|.+ +..| ..++++++|++|++++|.+.+.. |..+.. ++ ++++|+
T Consensus 4 ~p~~~-~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~--p~~~~~-l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 4 NPRNV-SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNA--PPGNGE-QREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTS--CTTSCC-CHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccc-ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccC--Cccccc-chhcchhhhhhhhccCCCEEE
Confidence 34445 458999999999999 5667 78999999999999999886431 333333 44 469999
Q ss_pred cCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-c
Q 047429 72 LSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150 (466)
Q Consensus 72 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~ 150 (466)
+++|.+++++.. .++|++|++++|.+++ .|.. . ++|++|++++|.+.+ ++. . .++|++|+ +
T Consensus 78 l~~~~l~~lp~~--------~~~L~~L~l~~n~l~~-lp~~---~-~~L~~L~l~~n~l~~-l~~-~---~~~L~~L~L~ 139 (454)
T 1jl5_A 78 LNNLGLSSLPEL--------PPHLESLVASCNSLTE-LPEL---P-QSLKSLLVDNNNLKA-LSD-L---PPLLEYLGVS 139 (454)
T ss_dssp CTTSCCSCCCSC--------CTTCSEEECCSSCCSS-CCCC---C-TTCCEEECCSSCCSC-CCS-C---CTTCCEEECC
T ss_pred ecCCccccCCCC--------cCCCCEEEccCCcCCc-cccc---c-CCCcEEECCCCccCc-ccC-C---CCCCCEEECc
Confidence 999999886541 4689999999999997 4543 3 789999999999984 332 1 26899999 9
Q ss_pred ccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcccccccc
Q 047429 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230 (466)
Q Consensus 151 ~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 230 (466)
.|.+++ +| .+..+++|++|++++|.++++|..+ ++|++|++++|.+++ .|. +..+ +
T Consensus 140 ~n~l~~-----lp--------~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~-~~~l------~ 195 (454)
T 1jl5_A 140 NNQLEK-----LP--------ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPE-LQNL------P 195 (454)
T ss_dssp SSCCSS-----CC--------CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCC-CTTC------T
T ss_pred CCCCCC-----Cc--------ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Ccc-ccCC------C
Confidence 998876 44 5889999999999999999988654 589999999999987 443 4333 4
Q ss_pred ccceEecCCccccccCCC---C-------cccccccCcccCCCCCCcEEeCCCCee
Q 047429 231 SLQSFMLQNNMLSGSLPG---V-------TELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~---~-------~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
+|+.|++++|.+++.... . ..+. .+|. +..+++|++|++++|++
T Consensus 196 ~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 677777777777642111 0 1222 5664 77888899999988765
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-30 Score=261.64 Aligned_cols=351 Identities=18% Similarity=0.156 Sum_probs=204.9
Q ss_pred ccCCcCCcEEeCCCccccccc---hHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC----CCCEEEcCCCCCCCCC
Q 047429 9 HISLEDLQSINIGLNAIRVRK---FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP----SLRELDLSSSAPPKIN 81 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~~~ 81 (466)
+..+++|++|++++|.+++.. .+..+..+++|++|++++|.++... +..+...++ +|++|++++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH--HHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH--HHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 456677777777777766432 1145566677777777777765532 333433344 5777777777766432
Q ss_pred --ccccccccCCCCCccEEEcCCCCCCchhhhhhhc-----ccCCCcEEEccCCccccCC----ChhhhhcCCcccccc-
Q 047429 82 --YRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH-----ISKSLVYLDLSNNQLQGPT----PDYAFRNMTSLASLT- 149 (466)
Q Consensus 82 --~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~~L~~L~Ls~n~l~~~~----~~~~~~~l~~L~~L~- 149 (466)
.....+.. +++|++|++++|.++...+..+.. . ++|++|++++|.+++.. +. .+..+++|++|+
T Consensus 102 ~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L 177 (461)
T 1z7x_W 102 CGVLSSTLRT--LPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTV 177 (461)
T ss_dssp HHHHHHHTTS--CTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEEC
T ss_pred HHHHHHHHcc--CCceeEEECCCCcCchHHHHHHHHHHhcCC-CcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEEC
Confidence 00134445 677777777777776544443332 2 45777777777766533 23 445567777777
Q ss_pred cccccccccccCCCccccCcccccc-CCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhc
Q 047429 150 SLNYITGISKCSLPITLVRPKYAFS-NVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNF 223 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 223 (466)
+.|.++..+...+. ..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+++.....+...
T Consensus 178 ~~n~i~~~~~~~l~-------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 178 SNNDINEAGVRVLC-------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp CSSBCHHHHHHHHH-------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHH-------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 66666553221111 1111 24577777777777765 34556667777777777777654332222211
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCC-----CCCCCcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL-----CSSPMLQ 298 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~-----~~l~~L~ 298 (466)
+... .++|++|++++|.+++.... .++..+..+++|++|++++|.+ ++..+..+ ...++|+
T Consensus 251 ~~~~-~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i-------~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 251 LLHP-SSRLRTLWIWECGITAKGCG------DLCRVLRAKESLKELSLAGNEL-------GDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp HTST-TCCCCEEECTTSCCCHHHHH------HHHHHHHHCTTCCEEECTTCCC-------HHHHHHHHHHHHTSTTCCCC
T ss_pred HhcC-CCCceEEECcCCCCCHHHHH------HHHHHHhhCCCcceEECCCCCC-------chHHHHHHHHHhccCCccce
Confidence 1111 14677777777777632100 1455566677888888887554 22211111 1235788
Q ss_pred EEEccCCCCCCC----chhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhh-----ccCCCcE
Q 047429 299 VLDFSHNNISGM----VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI-----TLGLPKS 369 (466)
Q Consensus 299 ~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~~ 369 (466)
+|++++|.+++. ++..+..+++|+.|+++++... ......+. ..+.|++
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~----------------------~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE----------------------DAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH----------------------HHHHHHHHHHHTSTTCCCCE
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc----------------------cccHHHHHHHHcCCCCceEE
Confidence 888888888765 4556666677777775443211 11111111 2568999
Q ss_pred EECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 370 IDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 370 L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
|++++|++++.--. .+|.++..+++|++|++++|++++.
T Consensus 375 L~L~~n~i~~~~~~--------~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 375 LWLADCDVSDSSCS--------SLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EECTTSCCCHHHHH--------HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EECCCCCCChhhHH--------HHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999988741111 3455678899999999999999753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-28 Score=234.98 Aligned_cols=276 Identities=21% Similarity=0.239 Sum_probs=146.2
Q ss_pred CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcc
Q 047429 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHI 116 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 116 (466)
++.....+.+++.++.+ |..+ .++|++|++++|.++..++ ..+.. +++|++|++++|.+++..+..|..+
T Consensus 30 C~~~~~c~~~~~~l~~i---P~~~---~~~L~~L~l~~n~i~~~~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI---PSGL---TEAVKSLDLSNNRITYISN--SDLQR--CVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCSSC---CTTC---CTTCCEEECTTSCCCEECT--TTTTT--CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCeEeeCCCCCcccc---cccc---cccCcEEECCCCcCcccCH--HHhcc--CCCCCEEECCCCccCccCHhhcCCC
Confidence 33444455555555554 2222 2355555555555554443 33444 5555566665555555555555555
Q ss_pred cCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCC-cCCCC-C
Q 047429 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITGI-P 193 (466)
Q Consensus 117 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~ 193 (466)
++|++|++++|.+++ .+...++++++|++|+ +.|.++.. +. ...+..+++|++|++++| .++.+ +
T Consensus 100 -~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l-----~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 100 -GSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTL-----GE-----TSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp -TTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSS-----CS-----SCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred -CCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCccc-----Cc-----hhhhccCCCCcEEECCCCccccccCH
Confidence 555666666555553 2221355555555555 55544432 10 013455556666666655 24442 3
Q ss_pred cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc-cCCCCCCcEEeCC
Q 047429 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ-FCRPSSLVELDLE 272 (466)
Q Consensus 194 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~-~~~l~~L~~L~L~ 272 (466)
..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l------~~L~~L~l~~n~l~-----------~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSI------QNVSHLILHMKQHI-----------LLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTC------SEEEEEEEECSCST-----------THHHHHHHHTTTEEEEEEE
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhcc------ccCCeecCCCCccc-----------cchhhhhhhcccccEEECC
Confidence 455555666666666666555545444433 44566666666554 33322 2235556666665
Q ss_pred CCeeeeecccccccCCCC---CCCCCCccEEEccCCCCCCC----chhhhhhhhhhhhcCCCCceeeeeeeccCCCCccc
Q 047429 273 SNQLWLRFNHINGSATPK---LCSSPMLQVLDFSHNNISGM----VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDY 345 (466)
Q Consensus 273 ~n~l~l~~n~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~ 345 (466)
+|.+ ++..+.. ....+.++.++++++.+++. +|..+.
T Consensus 231 ~n~l-------~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~----------------------------- 274 (353)
T 2z80_A 231 DTDL-------DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN----------------------------- 274 (353)
T ss_dssp SCBC-------TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH-----------------------------
T ss_pred CCcc-------ccccccccccccccchhhccccccccccCcchhhhHHHHh-----------------------------
Confidence 5433 2221111 12345566777777766542 222233
Q ss_pred ccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCcccC
Q 047429 346 QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGKI 417 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~i 417 (466)
.+++|++|++++|+++ .+|.. |..+++|++|++++|++++..
T Consensus 275 -----------------~l~~L~~L~Ls~N~l~-------------~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 275 -----------------QISGLLELEFSRNQLK-------------SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----------------TCTTCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----------------cccCCCEEECCCCCCC-------------ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3455588889998888 44444 478888999999999887543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-29 Score=252.87 Aligned_cols=346 Identities=19% Similarity=0.183 Sum_probs=247.3
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+++|++||+++|.++.......+..+++|++|++++|.++... .++..+.. +++|++|++++|.+++... ..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~--~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGV--HCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHH--HHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHh-CCCcCEEeCCCCcCChHHH--HHHHH
Confidence 4678999999999987766455889999999999999987541 22344455 8999999999999875433 12221
Q ss_pred CCCC----CccEEEcCCCCCCc----hhhhhhhcccCCCcEEEccCCccccCCChhhhhc-----CCcccccc-cccccc
Q 047429 90 SSSS----SLTHLHLSLCGLSN----SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN-----MTSLASLT-SLNYIT 155 (466)
Q Consensus 90 ~~l~----~L~~L~Ls~n~l~~----~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~-~~n~l~ 155 (466)
.+. +|++|++++|.++. ..+..+..+ ++|++|++++|.+.+..+. .+.. .++|++|+ +.|.++
T Consensus 79 -~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 79 -GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp -TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred -HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC-CceeEEECCCCcCchHHHH-HHHHHHhcCCCcceEEECCCCCCC
Confidence 033 79999999999985 457788888 9999999999998754444 3332 45799999 999888
Q ss_pred cccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccC-----CCCCcCEEEeeCCcCCCcc----chhhhhccc
Q 047429 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFG-----DMCCLKTLKIHDNILTAKL----PELFLNFSA 225 (466)
Q Consensus 156 ~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~~ 225 (466)
......++ ..+..+++|++|++++|.++. .+..+. ..++|++|++++|.+++.. +..+...
T Consensus 156 ~~~~~~l~-------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-- 226 (461)
T 1z7x_W 156 AASCEPLA-------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-- 226 (461)
T ss_dssp GGGHHHHH-------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC--
T ss_pred HHHHHHHH-------HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC--
Confidence 75433344 567788999999999999876 222222 3669999999999998753 3333333
Q ss_pred cccccccceEecCCccccccCCCCccccccc-CcccCCCCCCcEEeCCCCeeeeeccccccc----CCCCCCCCCCccEE
Q 047429 226 GCAKKSLQSFMLQNNMLSGSLPGVTELDGTF-PKQFCRPSSLVELDLESNQLWLRFNHINGS----ATPKLCSSPMLQVL 300 (466)
Q Consensus 226 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l-p~~~~~l~~L~~L~L~~n~l~l~~n~~~~~----~~~~~~~l~~L~~L 300 (466)
++|++|++++|.+++.... .+ +..+..+++|++|++++|.+ ++. ++..+..+++|++|
T Consensus 227 ----~~L~~L~Ls~n~l~~~~~~------~l~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 227 ----ASLRELALGSNKLGDVGMA------ELCPGLLHPSSRLRTLWIWECGI-------TAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp ----TTCCEEECCSSBCHHHHHH------HHHHHHTSTTCCCCEEECTTSCC-------CHHHHHHHHHHHHHCTTCCEE
T ss_pred ----CCccEEeccCCcCChHHHH------HHHHHHhcCCCCceEEECcCCCC-------CHHHHHHHHHHHhhCCCcceE
Confidence 6799999999998742110 12 22244688999999999765 322 46667778999999
Q ss_pred EccCCCCCCCchhhhhhh-----hhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCC
Q 047429 301 DFSHNNISGMVPTCLNNL-----SAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN 375 (466)
Q Consensus 301 ~Ls~N~l~~~~p~~~~~l-----~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 375 (466)
++++|.+++..+..+... ++|+.|+++.+..... ........+..+++|++|++++|
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------------~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------------------CCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------------------GHHHHHHHHHHCSSCCEEECCSS
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------------------HHHHHHHHHhhCCCccEEEccCC
Confidence 999999987666666654 5787777554422100 00001223456799999999999
Q ss_pred cCCcCCcHHHHhhccCCCcccccC-CCCCCeeeccCCcCcc
Q 047429 376 NLSGKIPEEITSLLIGKIPRSFSQ-LSHLGVVNLSNNNFSG 415 (466)
Q Consensus 376 ~l~~~ip~~i~~l~~~~ip~~l~~-l~~L~~L~Ls~N~l~~ 415 (466)
++++..+..+.. .+.. .++|++|++++|.+++
T Consensus 352 ~i~~~~~~~l~~--------~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 352 RLEDAGVRELCQ--------GLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp BCHHHHHHHHHH--------HHTSTTCCCCEEECTTSCCCH
T ss_pred ccccccHHHHHH--------HHcCCCCceEEEECCCCCCCh
Confidence 998544443322 2332 6899999999999985
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=220.48 Aligned_cols=248 Identities=23% Similarity=0.286 Sum_probs=164.9
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch--hhhhhhcccC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS--AYHCLSHISK 118 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~ 118 (466)
+.++.++++++.+ |..+ .++|++|++++|.++.++. ..+.. +++|++|++++|.++.. .+..+..+ +
T Consensus 10 ~~l~c~~~~l~~i---p~~~---~~~l~~L~L~~n~l~~i~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~-~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSV---PTGI---PSSATRLELESNKLQSLPH--GVFDK--LTQLTKLSLSSNGLSFKGCCSQSDFGT-T 78 (306)
T ss_dssp TEEECCSSCCSSC---CSCC---CTTCCEEECCSSCCCCCCT--TTTTT--CTTCSEEECCSSCCCEEEEEEHHHHSC-S
T ss_pred CEEEcCCCCcccC---CCCC---CCCCCEEECCCCccCccCH--hHhhc--cccCCEEECCCCccCcccCcccccccc-c
Confidence 4566777766666 2221 3467777777777766554 34555 67777777777776633 24445555 6
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC--ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--KSF 196 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~l 196 (466)
+|++|++++|.+.. + + ..+..+++|++|++++|.++.++ ..+
T Consensus 79 ~L~~L~Ls~n~i~~-l----------------------------~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 122 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-M----------------------------S-------SNFLGLEQLEHLDFQHSNLKQMSEFSVF 122 (306)
T ss_dssp CCCEEECCSCSEEE-E----------------------------E-------EEEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred ccCEEECCCCcccc-C----------------------------h-------hhcCCCCCCCEEECCCCcccccccchhh
Confidence 77777777776652 2 2 34556677777777777777754 367
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+++. .+|..+..+++|++|++++|
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~---------~~~~~~~~l~~L~~L~Ls~n-- 185 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQEN---------FLPDIFTELRNLTFLDLSQC-- 185 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTC------TTCCEEECTTCEEGGG---------EECSCCTTCTTCCEEECTTS--
T ss_pred hhccCCCEEECCCCcCCccchhhcccC------cCCCEEECCCCccccc---------cchhHHhhCcCCCEEECCCC--
Confidence 777778888888887776666655444 5688888888877631 24566777888888888874
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecc
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPI 356 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (466)
.+++..|..+..+++|++|++++|.+++..+..|..+++|
T Consensus 186 -----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------------------- 225 (306)
T 2z66_A 186 -----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL----------------------------------- 225 (306)
T ss_dssp -----CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-----------------------------------
T ss_pred -----CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-----------------------------------
Confidence 4455556777788888888888888876666555554444
Q ss_pred cchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC-CCCeeeccCCcCcc
Q 047429 357 DSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS-HLGVVNLSNNNFSG 415 (466)
Q Consensus 357 ~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~-~L~~L~Ls~N~l~~ 415 (466)
+.|++++|++++ ..|..+..++ +|++|++++|.+++
T Consensus 226 -----------~~L~L~~N~l~~------------~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 226 -----------QVLDYSLNHIMT------------SKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -----------CEEECTTSCCCB------------CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred -----------CEeECCCCCCcc------------cCHHHHHhhhccCCEEEccCCCeec
Confidence 778888888774 3344566664 78888888888764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=221.94 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=161.6
Q ss_pred CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcc
Q 047429 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHI 116 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 116 (466)
..++++|+|++|.++.+ +..+.. +++|++|++++|.++.++ ..+.. +++|++|++++|.++ .+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~~l---p~~l~~-l~~L~~L~L~~n~l~~lp---~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF---PDQAFR-LSHLQHMTIDAAGLMELP---DTMQQ--FAGLETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSC---CSCGGG-GTTCSEEEEESSCCCCCC---SCGGG--GTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCchhc---Chhhhh-CCCCCEEECCCCCccchh---HHHhc--cCCCCEEECCCCccc-cCcHHHhcC
Confidence 35566666666666544 334444 566666666666655332 23444 556666666666655 345555555
Q ss_pred cCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 117 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
++|++|++++|.+.+.+|. .+.... ++ ..+..+++|++|++++|.++.+|..+
T Consensus 150 -~~L~~L~L~~n~~~~~~p~-~~~~~~------------------~~-------~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 150 -NRLRELSIRACPELTELPE-PLASTD------------------AS-------GEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp -TTCCEEEEEEETTCCCCCS-CSEEEC-------------------C-------CCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred -cCCCEEECCCCCCccccCh-hHhhcc------------------ch-------hhhccCCCCCEEECcCCCcCcchHhh
Confidence 5666666666555544444 222100 11 34667899999999999999999999
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
..+++|++|++++|.+++..+ .+..+ ++|++|++++|.+.+ .+|..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~-~l~~l------~~L~~L~Ls~n~~~~----------~~p~~~~~l~~L~~L~L~~--- 262 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGP-AIHHL------PKLEELDLRGCTALR----------NYPPIFGGRAPLKRLILKD--- 262 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCG-GGGGC------TTCCEEECTTCTTCC----------BCCCCTTCCCCCCEEECTT---
T ss_pred cCCCCCCEEEccCCCCCcCch-hhccC------CCCCEEECcCCcchh----------hhHHHhcCCCCCCEEECCC---
Confidence 999999999999999996444 45544 689999999998874 4566789999999999999
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
|.+.+.+|..+..+++|++|+|++|.+.+.+|..++++++|+
T Consensus 263 ----n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 263 ----CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ----CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ----CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 455688999999999999999999999999999999988883
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=228.45 Aligned_cols=272 Identities=19% Similarity=0.171 Sum_probs=203.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.++.....+++++.++.. | ..+ .++|++|++++|.++.+ +...+..+++|++|++++|.+++..+ ..+..
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P-~~~--~~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~- 98 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-P-SGL--TEAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSNGINTIEE--DSFSS- 98 (353)
T ss_dssp EECTTSEEECCSTTCSSC-C-TTC--CTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECT--TTTTT-
T ss_pred CCCCCeEeeCCCCCcccc-c-ccc--cccCcEEECCCCcCccc---CHHHhccCCCCCEEECCCCccCccCH--hhcCC-
Confidence 455566789999988854 3 222 35899999999999887 33333449999999999999988766 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc-ccccccccCCCccccC
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN-YITGISKCSLPITLVR 168 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n-~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+...+..+++|+.|+ +.| .++.. .+
T Consensus 99 -l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----~~----- 167 (353)
T 2z80_A 99 -LGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----QR----- 167 (353)
T ss_dssp -CTTCCEEECCSSCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----CT-----
T ss_pred -CCCCCEEECCCCcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc----CH-----
Confidence 8999999999999997777778888 99999999999998544412688899999999 777 45554 33
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+++ .|..+..+++|++|++++|.++......+... ++|+.|++++|.+++..+
T Consensus 168 --~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 168 --KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT------SSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT------TTEEEEEEESCBCTTCCC
T ss_pred --HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc------ccccEEECCCCccccccc
Confidence 578889999999999999998 57889999999999999999875443333233 579999999999985433
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
. .++ .......++.++++++.+ +++.+. .+|..+..+++|++|++++|.+++..+..|.++++|
T Consensus 240 ~------~l~-~~~~~~~l~~l~L~~~~l--~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 240 S------ELS-TGETNSLIKKFTFRNVKI--TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp C-------------CCCCCCEEEEESCBC--CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred c------ccc-cccccchhhccccccccc--cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence 2 111 133456788888888654 223332 467778899999999999999985444445665555
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=233.87 Aligned_cols=262 Identities=26% Similarity=0.291 Sum_probs=197.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+++.|++++|.++.. | ..+. ++|++|++++|.++.++ . . +++|++|+|++|.++.++. . +
T Consensus 40 ~~l~~L~ls~n~L~~l-p-~~l~--~~L~~L~L~~N~l~~lp---~---~-l~~L~~L~Ls~N~l~~lp~------~--l 100 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLTSLP---A---L-PPELRTLEVSGNQLTSLPV------L--P 100 (622)
T ss_dssp HCCCEEECCSSCCSCC-C-SCCC--TTCSEEEECSCCCSCCC---C---C-CTTCCEEEECSCCCSCCCC------C--C
T ss_pred CCCcEEEecCCCcCcc-C-hhhC--CCCcEEEecCCCCCCCC---C---c-CCCCCEEEcCCCcCCcCCC------C--C
Confidence 3689999999999844 4 3333 78999999999998773 2 3 8899999999999887543 3 7
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++.. . .+ ++|+.|++++|.+++ +|. . +++|+.|+ +.|.+++. | .
T Consensus 101 ~~L~~L~Ls~N~l~~l~-~---~l-~~L~~L~L~~N~l~~-lp~-~---l~~L~~L~Ls~N~l~~l-----~-------~ 158 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLP-A---LP-SGLCKLWIFGNQLTS-LPV-L---PPGLQELSVSDNQLASL-----P-------A 158 (622)
T ss_dssp TTCCEEEECSCCCCCCC-C---CC-TTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSCC-----C-------C
T ss_pred CCCCEEECcCCcCCCCC-C---CC-CCcCEEECCCCCCCc-CCC-C---CCCCCEEECcCCcCCCc-----C-------C
Confidence 89999999999998643 3 34 889999999999884 554 2 48899999 88888763 3 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..++|+.|++++|.++.+| ..+++|+.|++++|.+++..+ . +++|+.|++++|.++
T Consensus 159 ---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~-~---------~~~L~~L~L~~N~l~-------- 214 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT-L---------PSELYKLWAYNNRLT-------- 214 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C---------CTTCCEEECCSSCCS--------
T ss_pred ---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC-c---------cchhhEEECcCCccc--------
Confidence 2467899999999999887 456889999999999885332 1 157999999999988
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+|.. +++|+.|++++|.+ + .+| ..+++|++|++++|.+++ +|. .++
T Consensus 215 ---~l~~~---~~~L~~L~Ls~N~L-------~-~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~------------ 261 (622)
T 3g06_A 215 ---SLPAL---PSGLKELIVSGNRL-------T-SLP---VLPSELKELMVSGNRLTS-LPM---LPS------------ 261 (622)
T ss_dssp ---SCCCC---CTTCCEEECCSSCC-------S-CCC---CCCTTCCEEECCSSCCSC-CCC---CCT------------
T ss_pred ---ccCCC---CCCCCEEEccCCcc-------C-cCC---CCCCcCcEEECCCCCCCc-CCc---ccc------------
Confidence 55543 47899999998655 3 344 456889999999999884 443 223
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
+|+.|+|++|+++ .+|.++.++++|+.|+|++|
T Consensus 262 ----------------------------------~L~~L~Ls~N~L~-------------~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 262 ----------------------------------GLLSLSVYRNQLT-------------RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ----------------------------------TCCEEECCSSCCC-------------SCCGGGGGSCTTCEEECCSC
T ss_pred ----------------------------------cCcEEeCCCCCCC-------------cCCHHHhhccccCEEEecCC
Confidence 3477888888777 45556777788888888888
Q ss_pred cCcccCCC
Q 047429 412 NFSGKIPS 419 (466)
Q Consensus 412 ~l~~~ip~ 419 (466)
.+++.+|.
T Consensus 295 ~l~~~~~~ 302 (622)
T 3g06_A 295 PLSERTLQ 302 (622)
T ss_dssp CCCHHHHH
T ss_pred CCCCcCHH
Confidence 77765543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=220.06 Aligned_cols=225 Identities=20% Similarity=0.276 Sum_probs=169.7
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 143 (466)
.+++++|++++|.++.+++ .+.. +++|++|++++|.++ .+|..+..+ ++|++|++++|.+. .+|.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~---~l~~--l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~------- 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD---QAFR--LSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPA------- 144 (328)
T ss_dssp STTCCEEEEESSCCSSCCS---CGGG--GTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCG-------
T ss_pred ccceeEEEccCCCchhcCh---hhhh--CCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcH-------
Confidence 4566667776666665443 3444 666666666666666 555666666 66666666666665 4444
Q ss_pred cccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcc---------cCCCCCcCEEEeeCCcCC
Q 047429 144 SLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKS---------FGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 144 ~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~---------l~~l~~L~~L~L~~n~l~ 213 (466)
.+..+++|++|++++|.+.+ +|.. +..+++|++|++++|+++
T Consensus 145 ----------------------------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 145 ----------------------------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp ----------------------------GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred ----------------------------HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 34445555555665544433 4444 445999999999999998
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
.+|..+..+ ++|++|++++|.++ .+|..+..+++|++|++++ |.+.+.+|..++.
T Consensus 197 -~lp~~l~~l------~~L~~L~L~~N~l~-----------~l~~~l~~l~~L~~L~Ls~-------n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 197 -SLPASIANL------QNLKSLKIRNSPLS-----------ALGPAIHHLPKLEELDLRG-------CTALRNYPPIFGG 251 (328)
T ss_dssp -CCCGGGGGC------TTCCEEEEESSCCC-----------CCCGGGGGCTTCCEEECTT-------CTTCCBCCCCTTC
T ss_pred -cchHhhcCC------CCCCEEEccCCCCC-----------cCchhhccCCCCCEEECcC-------CcchhhhHHHhcC
Confidence 666666555 68999999999998 6677789999999999999 5567889999999
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLS 373 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 373 (466)
+++|++|+|++|.+.+.+|..+.++++| ++|+|+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L----------------------------------------------~~L~L~ 285 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQL----------------------------------------------EKLDLR 285 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTC----------------------------------------------CEEECT
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCC----------------------------------------------CEEeCC
Confidence 9999999999999999999888777666 899999
Q ss_pred CCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 374 DNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 374 ~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+|.+.+ .+|.++.++++|+.+++..|.+.
T Consensus 286 ~n~~~~------------~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLS------------RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCC------------CCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchh------------hccHHHhhccCceEEeCCHHHHH
Confidence 999886 55667899999999999988775
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=225.91 Aligned_cols=245 Identities=24% Similarity=0.313 Sum_probs=165.0
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
.+.++.++..++.++.. + .+++++|++++|.++...+..|..+ ++|++|+|++|.+.+..+. .|.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~---~----~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG---I----STNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIG-AFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSC---C----CTTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGG-GGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCC---C----CCCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChh-hccCCccCC
Confidence 44556666555554431 1 2456666666666665555566666 6666666666666544444 566666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCc-CCCccchhhhhc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNI-LTAKLPELFLNF 223 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 223 (466)
.|+ +.|.++.. .+ ..|..+++|++|++++|.++.++ ..|..+++|++|++++|. +....+..+..+
T Consensus 116 ~L~L~~n~l~~~----~~-------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 116 TLELFDNRLTTI----PN-------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp EEECCSSCCSSC----CT-------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred EEECCCCcCCee----CH-------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 666 55655543 22 45677788888888888887754 367788888888888744 433333344444
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|+.|++++|.++ .+|. +..+++|++|+|++| .+++..+..|..+++|++|+|+
T Consensus 185 ------~~L~~L~L~~n~l~-----------~~~~-~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 185 ------SNLRYLNLAMCNLR-----------EIPN-LTPLIKLDELDLSGN-------HLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp ------SSCCEEECTTSCCS-----------SCCC-CTTCSSCCEEECTTS-------CCCEECTTTTTTCTTCCEEECT
T ss_pred ------cccCeecCCCCcCc-----------cccc-cCCCcccCEEECCCC-------ccCccChhhhccCccCCEEECC
Confidence 56888888888887 5553 677788888888884 4455667788888888888888
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcH
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPE 383 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 383 (466)
+|.+++..+..|.++++| +.|+|++|+++ .+|
T Consensus 240 ~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~~~- 271 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSL----------------------------------------------VEINLAHNNLT-LLP- 271 (440)
T ss_dssp TCCCCEECTTSSTTCTTC----------------------------------------------CEEECTTSCCC-CCC-
T ss_pred CCceeEEChhhhcCCCCC----------------------------------------------CEEECCCCCCC-ccC-
Confidence 888887777666665555 88899999888 222
Q ss_pred HHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 384 EITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 384 ~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..|..+++|+.|+|++|.+.
T Consensus 272 ----------~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 ----------HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ----------TTTTSSCTTCCEEECCSSCEE
T ss_pred ----------hhHhccccCCCEEEcCCCCcc
Confidence 334678888999999998875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=226.36 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=168.6
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
.+.++.++..++.++. .+ .+++++|++++|.+++..+..|..+ ++|++|+|++|.+.+..+. .|.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~---~~----~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ---GI----PSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVG-AFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCS---CC----CTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTT-TTTTCTTCC
T ss_pred CcEEEECCCCcCccCC---CC----CCCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChh-hccCcccCC
Confidence 4566676666665543 11 3467777777777776666677777 7777777777777655555 666666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCC-cCCCccchhhhhc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDN-ILTAKLPELFLNF 223 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 223 (466)
.|+ +.|.++.. .+ ..|..+++|++|++++|.++.++. .|..+++|++|++++| .+....+..+..+
T Consensus 127 ~L~L~~n~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 127 TLELFDNWLTVI----PS-------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp EEECCSSCCSBC----CT-------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred EEECCCCcCCcc----Ch-------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 666 66666654 22 456777788888888888877543 6777888888888874 3433333334333
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|+.|++++|.++ .+| .+..+++|++|++++| .+++..|..|..+++|++|+++
T Consensus 196 ------~~L~~L~L~~n~l~-----------~~~-~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 196 ------FNLKYLNLGMCNIK-----------DMP-NLTPLVGLEELEMSGN-------HFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp ------TTCCEEECTTSCCS-----------SCC-CCTTCTTCCEEECTTS-------CCSEECGGGGTTCTTCCEEECT
T ss_pred ------CCCCEEECCCCccc-----------ccc-cccccccccEEECcCC-------cCcccCcccccCccCCCEEEeC
Confidence 56888888888777 443 2667778888888874 4455566777888888888888
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcH
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPE 383 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 383 (466)
+|.+++..|..|.++++| +.|+|++|+++ .+|
T Consensus 251 ~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~~~- 282 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASL----------------------------------------------VELNLAHNNLS-SLP- 282 (452)
T ss_dssp TSCCCEECTTTTTTCTTC----------------------------------------------CEEECCSSCCS-CCC-
T ss_pred CCcCceECHHHhcCCCCC----------------------------------------------CEEECCCCcCC-ccC-
Confidence 888877767666665555 88999999888 222
Q ss_pred HHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 384 EITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 384 ~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..|..+++|+.|+|++|.+.
T Consensus 283 ----------~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 ----------HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------TTSSTTCTTCCEEECCSSCEE
T ss_pred ----------hHHhccccCCCEEEccCCCcC
Confidence 334678889999999999875
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=218.95 Aligned_cols=251 Identities=23% Similarity=0.234 Sum_probs=197.6
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
+.++++++.++.... .+ .++|++|++++|.++.+ +..++..+++|++|++++|.++........+.. +++|
T Consensus 10 ~~l~c~~~~l~~ip~--~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT--GI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSL 80 (306)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS--CSCC
T ss_pred CEEEcCCCCcccCCC--CC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCccccccc--cccc
Confidence 578888888775432 22 36789999999998877 445444489999999999988755321134555 7899
Q ss_pred cEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccccc
Q 047429 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFS 174 (466)
Q Consensus 96 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~ 174 (466)
++|++++|.+.. .+..+..+ ++|++|++++|.+.+..+...+..+++|+.|+ +.|.+.+. .+ ..+.
T Consensus 81 ~~L~Ls~n~i~~-l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~-------~~~~ 147 (306)
T 2z66_A 81 KYLDLSFNGVIT-MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FN-------GIFN 147 (306)
T ss_dssp CEEECCSCSEEE-EEEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC----ST-------TTTT
T ss_pred CEEECCCCcccc-ChhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc----ch-------hhcc
Confidence 999999998874 45567777 89999999999988655422678888999999 88888765 44 5678
Q ss_pred CCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 175 NVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 175 ~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
.+++|++|++++|.+.+ +|..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~~~------ 215 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL------SSLQVLNMSHNNFFSLD------ 215 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTSCCSBCC------
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC------CCCCEEECCCCccCccC------
Confidence 88999999999999986 78889999999999999999988777766655 67999999999998322
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-CccEEEccCCCCCCCc
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-MLQVLDFSHNNISGMV 311 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 311 (466)
+..+..+++|++|++++| .+++..+..+..++ +|++|++++|.+++..
T Consensus 216 ----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 216 ----TFPYKCLNSLQVLDYSLN-------HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp ----SGGGTTCTTCCEEECTTS-------CCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ----hhhccCcccCCEeECCCC-------CCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 235788899999999994 55677788888885 8999999999998753
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-28 Score=229.17 Aligned_cols=224 Identities=18% Similarity=0.143 Sum_probs=130.9
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.++..+++.+.+..... ..+..+++|++|+|++|.++... +..+.. +++|++|++++|.+++.. .+.. ++
T Consensus 11 ~l~i~~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~----~~~~--l~ 80 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQIS--AADLAP-FTKLELLNLSSNVLYETL----DLES--LS 80 (317)
T ss_dssp EEEEESCCTTTHHHHHH-HHHTTGGGCSEEECTTSCCCCCC--HHHHTT-CTTCCEEECTTSCCEEEE----EETT--CT
T ss_pred ceeEeeccccchhhhHH-HHhccCCCCCEEECcCCccCcCC--HHHhhC-CCcCCEEECCCCcCCcch----hhhh--cC
Confidence 45556666666654433 45556667777777777776662 333444 777777777777765432 2444 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
+|++|++++|.+++.. .. ++|++|++++|.+.+..+
T Consensus 81 ~L~~L~Ls~n~l~~l~-----~~-~~L~~L~l~~n~l~~~~~-------------------------------------- 116 (317)
T 3o53_A 81 TLRTLDLNNNYVQELL-----VG-PSIETLHAANNNISRVSC-------------------------------------- 116 (317)
T ss_dssp TCCEEECCSSEEEEEE-----EC-TTCCEEECCSSCCSEEEE--------------------------------------
T ss_pred CCCEEECcCCcccccc-----CC-CCcCEEECCCCccCCcCc--------------------------------------
Confidence 7777777777665432 23 567777777776653221
Q ss_pred cCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhh-hccccccccccceEecCCccccccCCCCcc
Q 047429 174 SNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFL-NFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..+++|++|++++|.++.+ +..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l------~~L~~L~L~~N~l~-------- 182 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------DTLEHLNLQYNFIY-------- 182 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT------TTCCEEECTTSCCC--------
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc------CcCCEEECCCCcCc--------
Confidence 1234566666666666663 33556666677777777766655544432 22 45667777777666
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNL 318 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 318 (466)
.+|. ...+++|++|++++|++ ..+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 183 ---~~~~-~~~l~~L~~L~Ls~N~l--------~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 183 ---DVKG-QVVFAKLKTLDLSSNKL--------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp ---EEEC-CCCCTTCCEEECCSSCC--------CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ---cccc-ccccccCCEEECCCCcC--------CcchhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 2222 22356677777776544 234444666677777777777766 344444333
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=211.24 Aligned_cols=211 Identities=23% Similarity=0.276 Sum_probs=130.6
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
++++.++++++.+ |..+ .++|++|++++|.++..++ ..+.. +++|++|++++|.+++..+..+..+ ++|
T Consensus 14 ~~~~c~~~~l~~i---p~~~---~~~l~~L~l~~n~i~~~~~--~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAV---PVGI---PAASQRIFLHGNRISHVPA--ASFRA--CRNLTILWLHSNVLARIDAAAFTGL-ALL 82 (285)
T ss_dssp CEEECCSSCCSSC---CTTC---CTTCSEEECTTSCCCEECT--TTTTT--CTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred eEEEcCcCCcccC---CcCC---CCCceEEEeeCCcCCccCH--HHccc--CCCCCEEECCCCccceeCHhhcCCc-cCC
Confidence 4566666666555 2211 3466666666666665544 34444 5666666666666665555566665 666
Q ss_pred cEEEccCCc-cccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCC
Q 047429 121 VYLDLSNNQ-LQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~ 198 (466)
++|++++|. +....+ ..+..+++|++|++++|.++++ +..+..
T Consensus 83 ~~L~l~~n~~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 127 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDP-----------------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRG 127 (285)
T ss_dssp CEEECCSCTTCCCCCT-----------------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CEEeCCCCCCccccCH-----------------------------------HHhcCCcCCCEEECCCCcCCEECHhHhhC
Confidence 666666665 442222 3455566677777777777663 455666
Q ss_pred CCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeee
Q 047429 199 MCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~ 277 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n--- 187 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDL------GNLTHLFLHGNRIS-----------SVPERAFRGLHSLDRLLLHQN--- 187 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSS---
T ss_pred CcCCCEEECCCCcccccCHhHhccC------CCccEEECCCCccc-----------ccCHHHhcCccccCEEECCCC---
Confidence 7777777777777765555544444 46777777777776 3333 3666777777777774
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.+++..|..+..+++|++|++++|.+++..+..|..+++|
T Consensus 188 ----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 188 ----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ----CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ----cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 4455556777777777777777777777666666665555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=220.42 Aligned_cols=236 Identities=19% Similarity=0.179 Sum_probs=182.6
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+++.. . +.. +++|++|++++|.+++.+.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~-l~~L~~L~Ls~n~l~~l~~------ 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETL---D-LES-LSTLRTLDLNNNYVQELLV------ 97 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCH-HHHTTCTTCCEEECTTSCCEEEE---E-ETT-CTTCCEEECCSSEEEEEEE------
T ss_pred hccCCCCCEEECcCCccCcCCH-HHhhCCCcCCEEECCCCcCCcch---h-hhh-cCCCCEEECcCCccccccC------
Confidence 4567799999999999998877 88999999999999999998763 2 444 9999999999998875543
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccC
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVR 168 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~ 168 (466)
.++|++|++++|.+++..+.. + ++|++|++++|.+++..+.
T Consensus 98 ---~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~-------------------------------- 138 (317)
T 3o53_A 98 ---GPSIETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDL-------------------------------- 138 (317)
T ss_dssp ---CTTCCEEECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGB--------------------------------
T ss_pred ---CCCcCEEECCCCccCCcCccc---c-CCCCEEECCCCCCCCccch--------------------------------
Confidence 689999999999999776544 4 7899999999998853332
Q ss_pred ccccccCCCccCEEecCCCcCCCC-Cccc-CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGI-PKSF-GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSL 246 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (466)
.+..+++|++|++++|.++++ +..+ ..+++|++|++++|.+++..+..+ .++|++|++++|+++
T Consensus 139 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------l~~L~~L~Ls~N~l~--- 204 (317)
T 3o53_A 139 ---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--------FAKLKTLDLSSNKLA--- 204 (317)
T ss_dssp ---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC--------CTTCCEEECCSSCCC---
T ss_pred ---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc--------cccCCEEECCCCcCC---
Confidence 344566777777777777763 3333 356777777777777765422211 256888888888887
Q ss_pred CCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC-CCchhhhhhhhhhhhcC
Q 047429 247 PGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS-GMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 247 ~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~ 325 (466)
.+|..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++
T Consensus 205 --------~l~~~~~~l~~L~~L~L~~N~l--------~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 205 --------FMGPEFQSAAGVTWISLRNNKL--------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp --------EECGGGGGGTTCSEEECTTSCC--------CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred --------cchhhhcccCcccEEECcCCcc--------cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 5555677788888999888665 356777888899999999999998 77788888888887776
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=212.06 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=174.2
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 94 (466)
-++++++++.++.. | . ...++|++|++++|.++.+ +...+..+++|++|++++|.+++..+ ..+.. +++
T Consensus 13 ~~~~~c~~~~l~~i-p-~--~~~~~l~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~--l~~ 81 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV-P-V--GIPAASQRIFLHGNRISHV---PAASFRACRNLTILWLHSNVLARIDA--AAFTG--LAL 81 (285)
T ss_dssp SCEEECCSSCCSSC-C-T--TCCTTCSEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECT--TTTTT--CTT
T ss_pred CeEEEcCcCCcccC-C-c--CCCCCceEEEeeCCcCCcc---CHHHcccCCCCCEEECCCCccceeCH--hhcCC--ccC
Confidence 36899999988855 3 2 2357899999999999887 33333449999999999999998766 57777 999
Q ss_pred ccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccc
Q 047429 95 LTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 95 L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
|++|++++|. +....+..+..+ ++|++|++++|.+.+..+. .+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-----------------------------------~~ 125 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPG-----------------------------------LF 125 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTT-----------------------------------TT
T ss_pred CCEEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHh-----------------------------------Hh
Confidence 9999999997 887778889998 9999999999998854433 34
Q ss_pred cCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 174 SNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
..+++|++|++++|.++.++. .+..+++|++|++++|++++..+..+..+ ++|+.|++++|.+++.
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~------- 192 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL------HSLDRLLLHQNRVAHV------- 192 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC------TTCCEEECCSSCCCEE-------
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc------cccCEEECCCCccccc-------
Confidence 556677777777777777543 46777788888888887776555545444 5688888888887732
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
.|..+..+++|++|++++|.+ ++..+..+..+++|++|++++|++....+
T Consensus 193 ---~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 193 ---HPHAFRDLGRLMTLYLFANNL-------SALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCC-------SCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ---CHhHccCcccccEeeCCCCcC-------CcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 245678888899999988544 44444568888999999999999876543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=221.31 Aligned_cols=248 Identities=20% Similarity=0.207 Sum_probs=196.2
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.++.++..++.. | ..+ .++++.|+|++|.++.+. +..+.. +++|++|+|++|.++...+ ..+.. ++
T Consensus 44 ~~~~v~c~~~~l~~i-P-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~i~~--~~~~~--l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-P-DGI--STNTRLLNLHENQIQIIK--VNSFKH-LRHLEILQLSRNHIRTIEI--GAFNG--LA 112 (440)
T ss_dssp TSCEEECCSCCCSSC-C-SCC--CTTCSEEECCSCCCCEEC--TTTTSS-CSSCCEEECCSSCCCEECG--GGGTT--CS
T ss_pred CCCEEEeCCCCcCcC-C-CCC--CCCCcEEEccCCcCCeeC--HHHhhC-CCCCCEEECCCCcCCccCh--hhccC--Cc
Confidence 356788888877744 3 222 367889999999888773 233444 8999999999998887766 56777 88
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cc-cccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL-NYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~-n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+....+. .|..+++|+.|+ +. +.+... -+ .
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i----~~-------~ 179 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYI----SE-------G 179 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEE----CT-------T
T ss_pred cCCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCccee----Cc-------c
Confidence 99999999999987777778888 8999999999998865555 788889999998 65 444443 12 4
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.|..+++|++|++++|.++.+|. +..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~n~l~~~~----- 247 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL------MHLQKLWMIQSQIQVIE----- 247 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEEC-----
T ss_pred hhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccC------ccCCEEECCCCceeEEC-----
Confidence 68889999999999999998874 7889999999999999998878777666 68999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+..|..+++|+.|+|++|+ +++..+..+..+++|+.|+|++|.+.-
T Consensus 248 -----~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 248 -----RNAFDNLQSLVEINLAHNN-------LTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -----TTSSTTCTTCCEEECTTSC-------CCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -----hhhhcCCCCCCEEECCCCC-------CCccChhHhccccCCCEEEcCCCCccC
Confidence 3568889999999999954 455566678889999999999999763
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=221.90 Aligned_cols=248 Identities=21% Similarity=0.203 Sum_probs=201.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.++.++..++.. | ..+ .+++++|+|++|.++.+. +..+.. +++|++|+|++|.++...+ ..+.. ++
T Consensus 55 ~~~~v~c~~~~l~~i-P-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~~~~--~~~~~--l~ 123 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-P-QGI--PSNTRYLNLMENNIQMIQ--ADTFRH-LHHLEVLQLGRNSIRQIEV--GAFNG--LA 123 (452)
T ss_dssp SSCEEECCSSCCSSC-C-SCC--CTTCSEEECCSSCCCEEC--TTTTTT-CTTCCEEECCSSCCCEECT--TTTTT--CT
T ss_pred CCcEEEECCCCcCcc-C-CCC--CCCccEEECcCCcCceEC--HHHcCC-CCCCCEEECCCCccCCcCh--hhccC--cc
Confidence 346788888887754 3 222 367999999999998873 334444 9999999999999988776 56777 89
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cc-cccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL-NYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~-n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+....+. .|.++++|+.|+ +. +.+... -+ .
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i----~~-------~ 190 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSY-AFNRVPSLMRLDLGELKKLEYI----SE-------G 190 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEE----CT-------T
T ss_pred cCCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHh-HHhcCCcccEEeCCCCCCcccc----Ch-------h
Confidence 99999999999998777778888 9999999999999865555 888999999999 65 445443 11 4
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.|..+++|++|++++|.++++| .+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++..
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~n~l~~~~----- 258 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL------SSLKKLWVMNSQVSLIE----- 258 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC------TTCCEEECTTSCCCEEC-----
T ss_pred hccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc------cCCCEEEeCCCcCceEC-----
Confidence 6888999999999999999986 47889999999999999998888877766 68999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
|..|..+++|+.|+|++|+ +++..+..+..+++|+.|+|++|.+.-
T Consensus 259 -----~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 259 -----RNAFDGLASLVELNLAHNN-------LSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp -----TTTTTTCTTCCEEECCSSC-------CSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred -----HHHhcCCCCCCEEECCCCc-------CCccChHHhccccCCCEEEccCCCcCC
Confidence 4568899999999999954 455556678899999999999999764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-27 Score=222.50 Aligned_cols=257 Identities=19% Similarity=0.141 Sum_probs=188.6
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHh-------cCCCCCCEEEcCCCCCC
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI-------TGLPSLRELDLSSSAPP 78 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------~~l~~L~~L~Ls~n~l~ 78 (466)
.+.++..++|++|++++|.+ ..| ..+... |+.|+|++|.++... ++..+. . +++|++|++++|.++
T Consensus 36 ~~~~~~~~~L~~l~l~~n~l--~~p-~~~~~~--L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 36 VELYGGGRSLEYLLKRVDTE--ADL-GQFTDI--IKSLSLKRLTVRAAR-IPSRILFGALRVLG-ISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEEEEECTTHHHHCCTT--CCC-HHHHHH--HHHCCCCEEEEEEEE-CBHHHHHHHHHHHT-TSCCCEEEEEEEBCB
T ss_pred EEEEccCCCceeEeeccccc--ccH-HHHHHH--HhhcccccccccCCC-cCHHHHHHHHHhcC-cCCccEEEccCCccc
Confidence 44567788899999999998 344 444433 888899999886531 133333 4 899999999999998
Q ss_pred CCCcccccc--ccCCCCCccEEEcCCCCCCchhhhhhhcc----cCCCcEEEccCCccccCCChhhhhcCCcccccc-cc
Q 047429 79 KINYRSHSL--VNSSSSSLTHLHLSLCGLSNSAYHCLSHI----SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL 151 (466)
Q Consensus 79 ~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~ 151 (466)
+..+ ..+ .. +++|++|++++|.+++. |..+..+ .++|++|++++|.+.+..+. .++.+++|++|+ +.
T Consensus 109 ~~~~--~~~~~~~--l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 109 GTAP--PPLLEAT--GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSD 182 (312)
T ss_dssp SCCC--CCSSSCC--SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCS
T ss_pred chhH--HHHHHhc--CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCC
Confidence 6655 333 55 88999999999999876 6666554 26899999999999877667 888899999999 88
Q ss_pred cccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC----cccCCCCCcCEEEeeCCcCCCccch-hhhhcccc
Q 047429 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP----KSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAG 226 (466)
Q Consensus 152 n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~ 226 (466)
|.+.+... ++. ...+..+++|++|++++|.+++++ ..+..+++|++|++++|.+++..|. .+...
T Consensus 183 N~l~~~~~--~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--- 252 (312)
T 1wwl_A 183 NPELGERG--LIS-----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--- 252 (312)
T ss_dssp CTTCHHHH--HHH-----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---
T ss_pred CCcCcchH--HHH-----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---
Confidence 87654200 110 012377889999999999988532 2345778999999999998876642 22222
Q ss_pred ccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 227 CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 227 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
++|++|++++|.++ .+|..+. ++|++|++++|++ ++ +|. +..+++|++|++++|+
T Consensus 253 ---~~L~~L~Ls~N~l~-----------~ip~~~~--~~L~~L~Ls~N~l-------~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 ---SQLNSLNLSFTGLK-----------QVPKGLP--AKLSVLDLSYNRL-------DR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---TTCCEEECTTSCCS-----------SCCSSCC--SEEEEEECCSSCC-------CS-CCC-TTTSCEEEEEECTTCT
T ss_pred ---CCCCEEECCCCccC-----------hhhhhcc--CCceEEECCCCCC-------CC-Chh-HhhCCCCCEEeccCCC
Confidence 57999999999988 5666655 7899999998655 33 355 8888999999999999
Q ss_pred CCCC
Q 047429 307 ISGM 310 (466)
Q Consensus 307 l~~~ 310 (466)
+++.
T Consensus 308 l~~~ 311 (312)
T 1wwl_A 308 FLDS 311 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8753
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-26 Score=227.62 Aligned_cols=230 Identities=19% Similarity=0.150 Sum_probs=161.2
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
+|++|+|++|.++... +..+.. +++|++|+|++|.+++..+ +.. +++|++|++++|.+++.. .. +
T Consensus 35 ~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~~~~----l~~--l~~L~~L~Ls~N~l~~l~-----~~-~ 99 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS--AADLAP-FTKLELLNLSSNVLYETLD----LES--LSTLRTLDLNNNYVQELL-----VG-P 99 (487)
T ss_dssp GCCEEECCSSCCCCCC--GGGGTT-CTTCCEEECTTSCCEEEEE----CTT--CTTCCEEECCSSEEEEEE-----EC-T
T ss_pred CccEEEeeCCcCCCCC--HHHHhC-CCCCCEEEeeCCCCCCCcc----ccc--CCCCCEEEecCCcCCCCC-----CC-C
Confidence 6677777777666652 223333 6677777777766654322 444 666777777777665432 22 5
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSF 196 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l 196 (466)
+|++|++++|.+.+..+. .+++|+.|+ +.|.+++. .| ..+..+++|++|++++|.+++ .|..+
T Consensus 100 ~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~----~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----RGQGKKNIYLANNKITML----RD-------LDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSG----GG-------BCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCC----Cc-------hhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 667777777766643322 345666666 66666654 33 467778889999999998888 55566
Q ss_pred C-CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 197 G-DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 197 ~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
. .+++|++|+|++|.+++..+.. . .++|+.|++++|.++ .+|..+..+++|+.|++++|.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~--~------l~~L~~L~Ls~N~l~-----------~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDVKGQV--V------FAKLKTLDLSSNKLA-----------FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC--C------CTTCCEEECCSSCCC-----------EECGGGGGGTTCSEEECTTSC
T ss_pred hhhCCcccEEecCCCccccccccc--c------CCCCCEEECCCCCCC-----------CCCHhHcCCCCccEEEecCCc
Confidence 4 6889999999999888653322 1 257999999999998 455568888999999999966
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCC-CCchhhhhhhhhhhhcC
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS-GMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~ 325 (466)
+ + .+|..+..+++|+.|++++|.+. +.+|..+..++.++.+.
T Consensus 226 l-------~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 226 L-------V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp C-------C-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred C-------c-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 5 3 47778889999999999999998 67788888888887665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-26 Score=220.26 Aligned_cols=238 Identities=20% Similarity=0.157 Sum_probs=185.3
Q ss_pred HhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc-------cCCCCCccEEEcCCCCC
Q 047429 33 WLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV-------NSSSSSLTHLHLSLCGL 105 (466)
Q Consensus 33 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------~~~l~~L~~L~Ls~n~l 105 (466)
.++..++|++|++++|.+ .+ |..+.. . |++|++++|.+...... ..+. . +++|++|++++|.+
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~---p~~~~~-~--L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~--l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-AD---LGQFTD-I--IKSLSLKRLTVRAARIP-SRILFGALRVLG--ISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CC---CHHHHH-H--HHHCCCCEEEEEEEECB-HHHHHHHHHHHT--TSCCCEEEEEEEBC
T ss_pred EEccCCCceeEeeccccc-cc---HHHHHH-H--HhhcccccccccCCCcC-HHHHHHHHHhcC--cCCccEEEccCCcc
Confidence 355677899999999999 55 666666 3 88999999988543211 2222 4 78999999999999
Q ss_pred Cchhhhhh--hcccCCCcEEEccCCccccCCChhhhhcC-----Ccccccc-cccccccccccCCCccccCccccccCCC
Q 047429 106 SNSAYHCL--SHISKSLVYLDLSNNQLQGPTPDYAFRNM-----TSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVT 177 (466)
Q Consensus 106 ~~~~~~~l--~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~ 177 (466)
++..|..+ ..+ ++|++|++++|.+++. |. .++.+ ++|++|+ +.|.+++. .+ ..+..++
T Consensus 108 ~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~----~~-------~~~~~l~ 173 (312)
T 1wwl_A 108 TGTAPPPLLEATG-PDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNF----SC-------EQVRVFP 173 (312)
T ss_dssp BSCCCCCSSSCCS-CCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCC----CT-------TTCCCCS
T ss_pred cchhHHHHHHhcC-CCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccc----hH-------HHhccCC
Confidence 98888876 777 9999999999999976 76 78877 8999999 99999886 44 6788999
Q ss_pred ccCEEecCCCcCCC---CCccc--CCCCCcCEEEeeCCcCCCcc--c-hhhhhccccccccccceEecCCccccccCCCC
Q 047429 178 SLMDLDLSKNQITG---IPKSF--GDMCCLKTLKIHDNILTAKL--P-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~---~~~~l--~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
+|++|++++|.+.+ ++..+ ..+++|++|++++|++++.. + ..+..+ ++|++|++++|++++..|.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~~~- 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR------VQLQGLDLSHNSLRDAAGA- 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT------CCCSEEECTTSCCCSSCCC-
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC------CCCCEEECCCCcCCcccch-
Confidence 99999999999765 23333 88999999999999998422 1 222222 5799999999999854321
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..+..+++|++|++++|++ ..+|..+. ++|++||+++|++++. |. +..+++|
T Consensus 247 --------~~~~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 247 --------PSCDWPSQLNSLNLSFTGL--------KQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp --------SCCCCCTTCCEEECTTSCC--------SSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred --------hhhhhcCCCCEEECCCCcc--------Chhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 3456689999999999765 36777666 8999999999999976 54 6665555
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=216.47 Aligned_cols=246 Identities=25% Similarity=0.285 Sum_probs=200.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|++++|.++.. + . .+++|++|+|++|.++.+ +. . +++|++|++++|.++.++. . +
T Consensus 61 ~~L~~L~L~~N~l~~l-p-~---~l~~L~~L~Ls~N~l~~l---p~---~-l~~L~~L~Ls~N~l~~l~~------~--l 120 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLTSL---PV---L-PPGLLELSIFSNPLTHLPA------L--P 120 (622)
T ss_dssp TTCSEEEECSCCCSCC-C-C---CCTTCCEEEECSCCCSCC---CC---C-CTTCCEEEECSCCCCCCCC------C--C
T ss_pred CCCcEEEecCCCCCCC-C-C---cCCCCCEEEcCCCcCCcC---CC---C-CCCCCEEECcCCcCCCCCC------C--C
Confidence 7899999999999854 3 2 579999999999999987 33 3 8999999999999988654 2 7
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++.. |.. + ++|++|++++|.+++ +|. .+.+|+.|+ +.|.++.+ |
T Consensus 121 ~~L~~L~L~~N~l~~l-p~~---l-~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l-----~-------- 177 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSL-PVL---P-PGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTSL-----P-------- 177 (622)
T ss_dssp TTCCEEECCSSCCSCC-CCC---C-TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC-----C--------
T ss_pred CCcCEEECCCCCCCcC-CCC---C-CCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCCC-----c--------
Confidence 8999999999999864 433 3 889999999999984 443 356788999 88988874 2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..+++|+.|++++|.++++|.. +++|+.|++++|.++... .. +++|+.|++++|.++
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~-~~---------~~~L~~L~Ls~N~L~-------- 234 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP-AL---------PSGLKELIVSGNRLT-------- 234 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CC---------CTTCCEEECCSSCCS--------
T ss_pred --ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccC-CC---------CCCCCEEEccCCccC--------
Confidence 3468899999999999998764 478999999999998533 21 257999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+| ..+++|++|++++|.| ..+|. .+++|+.|+|++|.++ .+|..|.++++|
T Consensus 235 ---~lp---~~l~~L~~L~Ls~N~L--------~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L---------- 286 (622)
T 3g06_A 235 ---SLP---VLPSELKELMVSGNRL--------TSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE---------- 286 (622)
T ss_dssp ---CCC---CCCTTCCEEECCSSCC--------SCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT----------
T ss_pred ---cCC---CCCCcCcEEECCCCCC--------CcCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc----------
Confidence 555 3458899999999766 34555 6788999999999999 667777776666
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
+.|+|++|.+++.+|..+..+
T Consensus 287 ------------------------------------~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 287 ------------------------------------TTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ------------------------------------CEEECCSCCCCHHHHHHHHHH
T ss_pred ------------------------------------CEEEecCCCCCCcCHHHHHhc
Confidence 899999999998888776654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-25 Score=220.78 Aligned_cols=233 Identities=23% Similarity=0.210 Sum_probs=179.8
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 144 (466)
++|++|+|++|.++..++ ..+.. +++|++|++++|.+++..+ +..+ ++|++|+|++|.+++. ...++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~--~~~~~--l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l------~~~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA--ADLAP--FTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL------LVGPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCG--GGGTT--CTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE------EECTT
T ss_pred CCccEEEeeCCcCCCCCH--HHHhC--CCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC------CCCCC
Confidence 489999999999999877 57777 9999999999999987665 7888 9999999999998842 23478
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhh-
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFL- 221 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~- 221 (466)
|+.|+ +.|.+++. . ...+++|+.|++++|.+++ .|..+..+++|++|++++|.+++..|..+.
T Consensus 101 L~~L~L~~N~l~~~----~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 101 IETLHAANNNISRV----S----------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp CCEEECCSSCCCCE----E----------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cCEEECcCCcCCCC----C----------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 88898 88888775 1 2345788999999999988 456788888999999999999887776654
Q ss_pred hccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEE
Q 047429 222 NFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301 (466)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~ 301 (466)
.+ ++|+.|++++|.+++. |. ...+++|++|+|++|.+ + .+|+.+..+++|+.|+
T Consensus 167 ~l------~~L~~L~Ls~N~l~~~-----------~~-~~~l~~L~~L~Ls~N~l-------~-~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 167 SS------DTLEHLNLQYNFIYDV-----------KG-QVVFAKLKTLDLSSNKL-------A-FMGPEFQSAAGVTWIS 220 (487)
T ss_dssp GT------TTCCEEECTTSCCCEE-----------EC-CCCCTTCCEEECCSSCC-------C-EECGGGGGGTTCSEEE
T ss_pred hC------CcccEEecCCCccccc-----------cc-cccCCCCCEEECCCCCC-------C-CCCHhHcCCCCccEEE
Confidence 33 5789999999988833 22 33578899999988655 3 4555688888899999
Q ss_pred ccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC-cC
Q 047429 302 FSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS-GK 380 (466)
Q Consensus 302 Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~ 380 (466)
|++|.+++ +|..+..++ .|+.|++++|.+. +.
T Consensus 221 Ls~N~l~~-lp~~l~~l~----------------------------------------------~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQ----------------------------------------------NLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CTTSCCCE-ECTTCCCCT----------------------------------------------TCCEEECTTCCBCHHH
T ss_pred ecCCcCcc-cchhhccCC----------------------------------------------CCCEEEcCCCCCcCcc
Confidence 99998885 555554444 4488999999887 33
Q ss_pred CcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 381 ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
+ |..+..++.|+.++++
T Consensus 254 ~------------~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 L------------RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp H------------HHHHTTCHHHHHHHHH
T ss_pred h------------HHHHHhCCCCcEEecc
Confidence 3 3446667777777775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=194.67 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=135.1
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+|++|++++|.++..++ ..+.. +++|++|++++|.++...+..+..+ ++|++|++++|.+.+..+. .+.++++|
T Consensus 29 ~l~~L~ls~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS--YSFFS--FPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALG-AFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCCEECT--TTTTT--CTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTT-TTTTCTTC
T ss_pred CccEEECCCCcccccCH--hHhcc--ccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChh-hhcCCccc
Confidence 34444444444444333 23333 4444444444444444444444444 4455555555544433333 44444455
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
++|+ +.|.++.. .+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+..
T Consensus 103 ~~L~l~~n~l~~~----~~-------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 103 QKLVAVETNLASL----EN-------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CEEECTTSCCCCS----TT-------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred cEEECCCCCcccc----Cc-------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 5554 44444443 12 357788999999999999987 6888999999999999999999877776665
Q ss_pred ccccccccccc----eEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 223 FSAGCAKKSLQ----SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 223 ~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
+ .+|+ .|++++|.++ .++.......+|++|++++|++ ++..+..+..+++|+
T Consensus 172 l------~~L~~l~l~L~ls~n~l~-----------~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 172 L------HQMPLLNLSLDLSLNPMN-----------FIQPGAFKEIRLKELALDTNQL-------KSVPDGIFDRLTSLQ 227 (276)
T ss_dssp H------HTCTTCCEEEECCSSCCC-----------EECTTSSCSCCEEEEECCSSCC-------SCCCTTTTTTCCSCC
T ss_pred h------hhccccceeeecCCCccc-----------ccCccccCCCcccEEECCCCce-------eecCHhHhccccccc
Confidence 5 3455 8999999998 4444445556899999999554 545555678999999
Q ss_pred EEEccCCCCCCCch
Q 047429 299 VLDFSHNNISGMVP 312 (466)
Q Consensus 299 ~L~Ls~N~l~~~~p 312 (466)
+|++++|++.+..+
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 99999999997654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-24 Score=212.11 Aligned_cols=276 Identities=19% Similarity=0.168 Sum_probs=195.7
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccc--hHHHHhcCCC-CCCEEEcCCCCCCCCCccccccccCCC-
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATD--WLQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSS- 92 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~l- 92 (466)
++++++|.+++..+ ..+...++|++|+|++|.++.... +...+.. ++ +|++|+|++|.++...+ ..+.. +
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~--~~l~~--~l 75 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN-TPASVTSLNLSGNSLGFKNS--DELVQ--IL 75 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-CCTTCCEEECCSSCGGGSCH--HHHHH--HH
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHh-CCCceeEEECcCCCCCHHHH--HHHHH--HH
Confidence 46788888887766 666666679999999999887631 1134444 77 89999999998887655 34443 3
Q ss_pred ----CCccEEEcCCCCCCchhhhhhhcc----cCCCcEEEccCCccccCCChhhhhc-----CCcccccc-ccccccccc
Q 047429 93 ----SSLTHLHLSLCGLSNSAYHCLSHI----SKSLVYLDLSNNQLQGPTPDYAFRN-----MTSLASLT-SLNYITGIS 158 (466)
Q Consensus 93 ----~~L~~L~Ls~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~-~~n~l~~~~ 158 (466)
++|++|++++|.+++..+..+... .++|++|++++|.+++..+. .+.. .++|++|+ +.|.+++.+
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 789999999999887666654432 15799999999998866554 4443 35899999 888888654
Q ss_pred ccCCCccccCccccccCCC-ccCEEecCCCcCCCCC-----cccCCC-CCcCEEEeeCCcCCCccchhhhhccccccccc
Q 047429 159 KCSLPITLVRPKYAFSNVT-SLMDLDLSKNQITGIP-----KSFGDM-CCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231 (466)
Q Consensus 159 ~~~l~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~-----~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 231 (466)
...++ ..+...+ +|++|++++|.+++.. ..+..+ ++|++|++++|.+++.....+...+.. .+++
T Consensus 155 ~~~l~-------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~ 226 (362)
T 3goz_A 155 SDELI-------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNH 226 (362)
T ss_dssp HHHHH-------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTT
T ss_pred HHHHH-------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCC
Confidence 43344 4555665 9999999999998732 244555 599999999999987554433332211 1247
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccc----ccCCCCCCCCCCccEEEccCCCC
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN----GSATPKLCSSPMLQVLDFSHNNI 307 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~----~~~~~~~~~l~~L~~L~Ls~N~l 307 (466)
|++|++++|.+++..+. .+...+..+++|++|++++|.+ ..++ ..++..+..+++|++||+++|.+
T Consensus 227 L~~L~Ls~N~l~~~~~~------~l~~~~~~l~~L~~L~L~~n~l----~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLE------NLKLLKDSLKHLQTVYLDYDIV----KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSCCCCCCHH------HHHHTTTTTTTCSEEEEEHHHH----TTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCCCCcHHHH------HHHHHHhcCCCccEEEeccCCc----cccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 99999999999854321 3344567889999999999764 2222 23445678899999999999999
Q ss_pred CCCchhhhhh
Q 047429 308 SGMVPTCLNN 317 (466)
Q Consensus 308 ~~~~p~~~~~ 317 (466)
.+..+..+.+
T Consensus 297 ~~~~~~~~~~ 306 (362)
T 3goz_A 297 HPSHSIPISN 306 (362)
T ss_dssp CGGGCHHHHH
T ss_pred CCcchHHHHH
Confidence 8776655544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=192.52 Aligned_cols=205 Identities=23% Similarity=0.248 Sum_probs=127.6
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
++++|++++|.+++..+ ..+..+++|++|++++|.++.+ +...+..+++|++|++++|.++...+ ..+.. ++
T Consensus 29 ~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--LS 100 (276)
T ss_dssp TCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECT--TTTTT--CT
T ss_pred CccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCcc---CHHHccCCcCCCEEECCCCccCccCh--hhhcC--Cc
Confidence 57777777777766554 5667777777777777776655 22223336777777777777766554 45555 67
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC-CChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP-TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.+.+..+..+..+ ++|++|++++|.+.+. .|. .+..+++|+.|+ +.|.+++. .+ .
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~ 167 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI----YC-------T 167 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEE----CG-------G
T ss_pred cccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcC----CH-------H
Confidence 77777777777766555566666 7777777777777643 355 666667777777 66666654 22 2
Q ss_pred cccCCCccC----EEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 172 AFSNVTSLM----DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 172 ~l~~l~~L~----~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+..+++|+ .|++++|.++.++.......+|++|++++|.+++..+..+..+ ++|+.|++++|.+++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC------CSCCEEECCSSCBCCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccc------ccccEEEccCCccccc
Confidence 344444444 6667777666654444444466777777776665555444433 4566666666666543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=190.90 Aligned_cols=181 Identities=25% Similarity=0.339 Sum_probs=88.3
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
....+++|+.|++++|.++.. ..+..+++|++|++++|.+++. + .+.. +++|++|++++|.+++.++ ..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~-~l~~-l~~L~~L~L~~n~l~~~~~--~~~ 105 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHDI---S-ALKE-LTNLTYLILTGNQLQSLPN--GVF 105 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCCC---G-GGTT-CTTCCEEECTTSCCCCCCT--TTT
T ss_pred ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCCc---h-hhcC-CCCCCEEECCCCccCccCh--hHh
Confidence 334455555555555555432 2344555555555555555443 1 2222 5555555555555554443 233
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+. .++.+++|+.|+ +.|.+++. .+
T Consensus 106 ~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~--- 174 (272)
T 3rfs_A 106 DK--LTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQSL----PE--- 174 (272)
T ss_dssp TT--CTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT---
T ss_pred cC--CcCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcCcc----CH---
Confidence 44 5555555555555554444444555 5555555555555533333 444555555555 55544443 12
Q ss_pred cCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCC
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+..+++|++|++++|.+++++ ..+..+++|++|++++|.+.
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 23444555555555555555532 23444555555555555444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=211.01 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=73.0
Q ss_pred EEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc--cccccCCCC-CccEEEcCCCCCCchhhhhhhcc--
Q 047429 42 SLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS--HSLVNSSSS-SLTHLHLSLCGLSNSAYHCLSHI-- 116 (466)
Q Consensus 42 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-- 116 (466)
.+++++|.+++. ...+....++|++|++++|.+++..... ..+.. ++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNP---VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCH---HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHH---HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 467888888876 4556653555999999999887765411 13444 66 89999999998887666666552
Q ss_pred --cCCCcEEEccCCccccCCChhhhhcC-----Ccccccc-cccccccc
Q 047429 117 --SKSLVYLDLSNNQLQGPTPDYAFRNM-----TSLASLT-SLNYITGI 157 (466)
Q Consensus 117 --~~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~-~~n~l~~~ 157 (466)
.++|++|++++|.+++..+. .+... ++|+.|+ +.|.+++.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ccCCCccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcH
Confidence 26788999999988865554 43332 4555555 55554443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=194.77 Aligned_cols=229 Identities=24% Similarity=0.281 Sum_probs=153.3
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.++..+++..+.+.+.. ....+++|+.|++++|.++... .+.. +++|++|++++|.+++. ..+.. +
T Consensus 19 ~~l~~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~----~l~~-l~~L~~L~l~~n~l~~~----~~l~~--l 84 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ----GIQY-LPNVRYLALGGNKLHDI----SALKE--L 84 (272)
T ss_dssp HHHHHHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCCCT----TGGG-CTTCCEEECTTSCCCCC----GGGTT--C
T ss_pred HHHHHHHhcCccccccc---ccccccceeeeeeCCCCccccc----cccc-CCCCcEEECCCCCCCCc----hhhcC--C
Confidence 34445555555555432 2445666667777776665542 2334 66677777776666653 23444 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCcccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+ ..
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-----------------------------------~~ 128 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPD-----------------------------------GV 128 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCT-----------------------------------TT
T ss_pred CCCCEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCH-----------------------------------HH
Confidence 666666666666665555556666 666666666666653222 34
Q ss_pred ccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
+..+++|++|++++|.+++++. .+..+++|++|++++|++++..+..+..+ ++|++|++++|.+++..
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~~~----- 197 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL------TQLKDLRLYQNQLKSVP----- 197 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCSCCC-----
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC------ccCCEEECCCCcCCccC-----
Confidence 5667788888888888887543 56778888888888888887666655544 57888888888887322
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
|..+..+++|++|++++|.+ . +.++.|++|+++.|.++|.+|.+++.+...
T Consensus 198 -----~~~~~~l~~L~~L~l~~N~~-------~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 198 -----DGVFDRLTSLQYIWLHDNPW-------D-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp -----TTTTTTCTTCCEEECCSSCB-------C-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred -----HHHHhCCcCCCEEEccCCCc-------c-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 23477888999999998644 2 446778999999999999999888877655
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-24 Score=222.92 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhc-CCC-CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc--ccc
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSY-HNK-LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR--SHS 86 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~ 86 (466)
.+++|++|+|++|.+++..+ ..+.. ++. |++|+|++|.-..... ...+...+++|++|+|++|.+++.... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDL-DRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCEEEEESCEEEEHHH-HHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHH-HHHHHhccccCcEEECcCCCCcCHHH-HHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 67889999999988877666 55555 344 9999998886211111 223333389999999999987655321 012
Q ss_pred cccCCCCCccEEEcCCCCCC----chhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 87 LVNSSSSSLTHLHLSLCGLS----NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
... +++|++|++++|.++ ...+..+..+ ++|++|++++|.+.+ .+. .+.++++|++|. +....... ...
T Consensus 188 ~~~--~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~-~~~ 261 (592)
T 3ogk_B 188 AQH--NTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIG-MPE 261 (592)
T ss_dssp HHH--CCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTT-CTT
T ss_pred Hhc--CCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccc-hHH
Confidence 344 789999999999887 2344455667 899999999998875 555 788889999888 43211100 000
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
.. ..+..+++|+.|+++++....+|..+..+++|++|++++|.++
T Consensus 262 ~~-------~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 262 KY-------MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SS-------SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred HH-------HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence 11 3445555666666665544445555555666666666666544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=186.63 Aligned_cols=45 Identities=29% Similarity=0.270 Sum_probs=28.0
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccch
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 218 (466)
..+++|++|++++|.++.+|..+..+++|++|++++|++++..+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 118 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHH
Confidence 345566777777777666666666666666666666666544433
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=193.53 Aligned_cols=234 Identities=18% Similarity=0.103 Sum_probs=171.4
Q ss_pred CCCCcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcccccc--ccCCCCCccEEEcCCCCCCchhh---
Q 047429 37 HNKLTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYRSHSL--VNSSSSSLTHLHLSLCGLSNSAY--- 110 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~--- 110 (466)
...++.+.+.++.++... ........ +++|++|++++|.+.+..+ ..+ .. +++|++|++++|.+++..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~--~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMP--PLPLEAT--GLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCC--CCSSSCC--CBCCSSCEEESCCCSSTTSSHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchh--hhhhhcc--CCCCCEEEeecccccchhhhhH
Confidence 345788888888775431 00112333 5779999999999887766 344 55 8899999999999986433
Q ss_pred -hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCc
Q 047429 111 -HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ 188 (466)
Q Consensus 111 -~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~ 188 (466)
..+..+ ++|++|++++|.+.+..+. .++.+++|++|+ +.|.+.+...-..+ ..+..+++|++|++++|.
T Consensus 138 ~~~~~~~-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 138 ELQQWLK-PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAA-------LCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp HHHTTBC-SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTT-------SCTTSSCCCCSCBCCSSC
T ss_pred HHHhhhc-cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHH-------HhhhcCCCCCEEECCCCC
Confidence 344566 8999999999999876666 888899999999 88876542100011 234678899999999999
Q ss_pred CCCCCc----ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCC
Q 047429 189 ITGIPK----SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264 (466)
Q Consensus 189 l~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~ 264 (466)
++.++. .+..+++|++|++++|.+++..|..+... ..+++|++|++++|+++ .+|..+. +
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~~~~~L~~L~Ls~N~l~-----------~lp~~~~--~ 272 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC---MWSSALNSLNLSFAGLE-----------QVPKGLP--A 272 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC---CCCTTCCCEECCSSCCC-----------SCCSCCC--S
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc---cCcCcCCEEECCCCCCC-----------chhhhhc--C
Confidence 987544 25678999999999999988766554333 12357999999999998 5566554 7
Q ss_pred CCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 265 ~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+|++|++++|++ + .+|. +..+++|+.|++++|+++.
T Consensus 273 ~L~~L~Ls~N~l-------~-~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 273 KLRVLDLSSNRL-------N-RAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECCSCCC-------C-SCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCEEECCCCcC-------C-CCch-hhhCCCccEEECcCCCCCC
Confidence 899999999665 3 3333 6788999999999999874
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=180.44 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=103.3
Q ss_pred CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
.+.+++++++++.+ |..+ .+++++|++++|.++..++ ..+.. +++|++|++++|.++...+..|..+ ++
T Consensus 18 ~~~l~~~~~~l~~i---p~~~---~~~l~~L~l~~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l-~~ 86 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI---PSNI---PADTKKLDLQSNKLSSLPS--KAFHR--LTKLRLLYLNDNKLQTLPAGIFKEL-KN 86 (270)
T ss_dssp TTEEECTTSCCSSC---CSCC---CTTCSEEECCSSCCSCCCT--TSSSS--CTTCCEEECCSSCCSCCCTTTTSSC-TT
T ss_pred CCEEEccCCCCCcc---CCCC---CCCCCEEECcCCCCCeeCH--HHhcC--CCCCCEEECCCCccCeeChhhhcCC-CC
Confidence 44555555555544 2111 1345555555555554443 33444 5555555555555554444444444 55
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCC
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGD 198 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~ 198 (466)
|++|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..|..
T Consensus 87 L~~L~l~~n~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 87 LETLWVTDNKLQALPI-----------------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp CCEEECCSSCCCCCCT-----------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred CCEEECCCCcCCcCCH-----------------------------------hHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 5555555555543222 23344555555555555555533 34455
Q ss_pred CCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeee
Q 047429 199 MCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~ 277 (466)
+++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|. .|..+++|++|++++|.+
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l- 193 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKL------TSLKELRLYNNQLK-----------RVPEGAFDKLTELKTLKLDNNQL- 193 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CcCCCEEECCCCcCCccCHhHccCC------cccceeEecCCcCc-----------EeChhHhccCCCcCEEECCCCcC-
Confidence 5556666666665554444433333 45666666666555 2222 355566666666666665
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.. ..+..+..+++|+.|++++|++...
T Consensus 194 ---~~---~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 194 ---KR---VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ---SC---CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ---Cc---CCHHHhccccCCCEEEecCCCeeCC
Confidence 21 2233456667777777777776543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=178.00 Aligned_cols=197 Identities=23% Similarity=0.317 Sum_probs=151.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+.++++++++.++.++. .+ .+++++|++++|.++...+..|..+ ++|++|++++|.++. ++.
T Consensus 17 ~~~~l~~~~~~l~~ip~---~~----~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~-i~~--------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS---NI----PADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQT-LPA--------- 78 (270)
T ss_dssp TTTEEECTTSCCSSCCS---CC----CTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSC-CCT---------
T ss_pred CCCEEEccCCCCCccCC---CC----CCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCe-eCh---------
Confidence 45667777776665543 11 2456677777776666555566666 667777777666652 221
Q ss_pred cccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
..|..+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+..+
T Consensus 79 -------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 132 (270)
T 2o6q_A 79 -------------------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL- 132 (270)
T ss_dssp -------------------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-
T ss_pred -------------------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-
Confidence 34677889999999999999965 467899999999999999998887776655
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|++|++++|.++ .+|. .+..+++|++|++++|.+ ++..+..+..+++|++|+++
T Consensus 133 -----~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 133 -----TKLTYLSLGYNELQ-----------SLPKGVFDKLTSLKELRLYNNQL-------KRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp -----TTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECC
T ss_pred -----cCCCEEECCCCcCC-----------ccCHhHccCCcccceeEecCCcC-------cEeChhHhccCCCcCEEECC
Confidence 68999999999998 4444 478899999999999544 55555678999999999999
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+|.+++..+..|..+++|+.++++.+
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCC
Confidence 99999888888999999999885554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=184.01 Aligned_cols=108 Identities=21% Similarity=0.132 Sum_probs=44.0
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+++++++++++++++.++.... .+ .++++.|+|++|.++... +..+.. +++|++|++++|.++..+. ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~--~~--~~~l~~L~L~~N~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~----~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP--DL--PKDTTILHLSENLLYTFS--LATLMP-YTRLTQLNLDRAELTKLQV----DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS--CC--CTTCCEEECTTSCCSEEE--GGGGTT-CTTCCEEECTTSCCCEEEC----CS
T ss_pred ccccCCccEEECCCCCCCcCCC--CC--CCCCCEEEcCCCcCCccC--HHHhhc-CCCCCEEECCCCccCcccC----CC
Confidence 3444455555555554443211 11 134444555555444431 112222 4444444444444443322 12
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
. +++|++|++++|.++ .+|..+..+ ++|++|++++|+++
T Consensus 75 ~--l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 75 T--LPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLT 113 (290)
T ss_dssp C--CTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCC
T ss_pred C--CCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCc
Confidence 2 444444444444443 223333333 44444444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-23 Score=202.53 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=153.1
Q ss_pred HHhhcCCCCcEEEccCCCCCCccchHHH---HhcCCCCCCEEEcCCCCCCCCCccc-cc-------cccCCCCCccEEEc
Q 047429 32 QWLSYHNKLTSLSLQGLDLREATDWLQV---VITGLPSLRELDLSSSAPPKINYRS-HS-------LVNSSSSSLTHLHL 100 (466)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~-~~-------~~~~~l~~L~~L~L 100 (466)
..+..+++|++|+|++|.++... +.. ....+++|++|+|++|.+..+.... .. +.. +++|++|++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~--~~~L~~L~L 101 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRL 101 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEEC
T ss_pred HHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh--CCcccEEEC
Confidence 34555666666666666665431 111 1222666666666665444322100 11 133 566666666
Q ss_pred CCCCCCc----hhhhhhhcccCCCcEEEccCCccccCCChhhhh----cC---------Ccccccc-cccccccccccCC
Q 047429 101 SLCGLSN----SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR----NM---------TSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 101 s~n~l~~----~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~----~l---------~~L~~L~-~~n~l~~~~~~~l 162 (466)
++|.++. ..+..+..+ ++|++|+|++|.+....+. .+. .+ ++|+.|+ +.|.++......+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 6666665 345555666 6677777776666533222 222 22 6666666 6666653221111
Q ss_pred CccccCccccccCCCccCEEecCCCcCCC------CCcccCCCCCcCEEEeeCCcCC----Cccchhhhhcccccccccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITG------IPKSFGDMCCLKTLKIHDNILT----AKLPELFLNFSAGCAKKSL 232 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L 232 (466)
. ..+..+++|++|++++|.++. ++..+..+++|++|+|++|.++ ..+|..+... ++|
T Consensus 180 ~-------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~------~~L 246 (386)
T 2ca6_A 180 A-------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------PNL 246 (386)
T ss_dssp H-------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC------TTC
T ss_pred H-------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC------CCc
Confidence 1 355677888899999888873 3337778888999999998885 3344444333 578
Q ss_pred ceEecCCccccccCCCCcccccccCccc--CCCCCCcEEeCCCCeeeeecccc-cccCCCCC-CCCCCccEEEccCCCCC
Q 047429 233 QSFMLQNNMLSGSLPGVTELDGTFPKQF--CRPSSLVELDLESNQLWLRFNHI-NGSATPKL-CSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~l~~~lp~~~--~~l~~L~~L~L~~n~l~l~~n~~-~~~~~~~~-~~l~~L~~L~Ls~N~l~ 308 (466)
++|++++|.+++.... .+|..+ ..+++|++|+|++|.+ ... ...+|..+ .++++|++|++++|.++
T Consensus 247 ~~L~L~~n~i~~~~~~------~l~~~l~~~~~~~L~~L~L~~n~i----~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 247 RELGLNDCLLSARGAA------AVVDAFSKLENIGLQTLRLQYNEI----ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECTTCCCCHHHHH------HHHHHHHTCSSCCCCEEECCSSCC----BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CEEECCCCCCchhhHH------HHHHHHhhccCCCeEEEECcCCcC----CHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 9999999988743211 245555 3488999999999987 220 01345555 56899999999999999
Q ss_pred CCch
Q 047429 309 GMVP 312 (466)
Q Consensus 309 ~~~p 312 (466)
+..+
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 8774
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=203.97 Aligned_cols=256 Identities=18% Similarity=0.176 Sum_probs=185.1
Q ss_pred ccccCCcCCcEEeCCCccccccchH---HHhhcCCCCcEEEccCCCCCCcc-chHHHH------hcCCCCCCEEEcCCCC
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFD---QWLSYHNKLTSLSLQGLDLREAT-DWLQVV------ITGLPSLRELDLSSSA 76 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~------~~~l~~L~~L~Ls~n~ 76 (466)
..+..+++|++|+|++|.+....+. ..+..+++|++|+|++|.+..+. ..+..+ ...+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3566789999999999999876541 23668999999999998766441 113333 2348999999999999
Q ss_pred CCCCCcc--ccccccCCCCCccEEEcCCCCCCchhhhhhhccc------------CCCcEEEccCCcccc-CCCh--hhh
Q 047429 77 PPKINYR--SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS------------KSLVYLDLSNNQLQG-PTPD--YAF 139 (466)
Q Consensus 77 l~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~------------~~L~~L~Ls~n~l~~-~~~~--~~~ 139 (466)
++..... ...+.. +++|++|++++|.++...+..+...+ ++|++|++++|.+.. ..+. ..+
T Consensus 106 l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 9874221 135566 89999999999999765555544322 589999999999973 3331 156
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCC-----CCCcccCCCCCcCEEEeeCCcCC
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT-----GIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+++|+.|+ +.|.++..+...+. +..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHH------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 6889999999 99988743211111 026788999999999999995 27778899999999999999998
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCccc-CCCCCCcEEeCCCCee
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF-CRPSSLVELDLESNQL 276 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~-~~l~~L~~L~L~~n~l 276 (466)
+.....+...+.....++|++|++++|.+++.... .+|..+ .++++|++|++++|.+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~------~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR------TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH------HHHHHHHHHCTTCCEEECTTSBS
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH------HHHHHHHhcCCCceEEEccCCcC
Confidence 76443333322211126799999999999831000 256666 5689999999999655
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=182.48 Aligned_cols=190 Identities=25% Similarity=0.347 Sum_probs=106.0
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhc
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 115 (466)
.+++|++|++++|.++.+ + .+.. +++|++|++++|.+++..+ +.. +++|++|++++|.+++. ..+..
T Consensus 39 ~l~~L~~L~l~~~~i~~l---~-~~~~-l~~L~~L~L~~n~i~~~~~----~~~--l~~L~~L~L~~n~l~~~--~~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI---E-GVQY-LNNLIGLELKDNQITDLAP----LKN--LTKITELELSGNPLKNV--SAIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCC---T-TGGG-CTTCCEEECCSSCCCCCGG----GTT--CCSCCEEECCSCCCSCC--GGGTT
T ss_pred HcCCcCEEEeeCCCccCc---h-hhhc-cCCCCEEEccCCcCCCChh----Hcc--CCCCCEEEccCCcCCCc--hhhcC
Confidence 345555555555555544 2 2333 5555555555555554432 333 55555555555555542 23444
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 194 (466)
+ ++|++|++++|.+.+ .+ .+..+++|+.|+ +.|.+++. ..+..+++|++|++++|.+++++.
T Consensus 106 l-~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 106 L-QSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-------------SPLAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp C-TTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG
T ss_pred C-CCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-------------ccccCCCCccEEEccCCcCCCChh
Confidence 4 555555555555543 22 345555555555 55555443 235556667777777776666544
Q ss_pred ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCC
Q 047429 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274 (466)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n 274 (466)
+..+++|++|++++|.+++..+ +..+ ++|+.|++++|+++ .++ .+..+++|+.|++++|
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l------~~L~~L~L~~N~l~-----------~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASL------PNLIEVHLKNNQIS-----------DVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGC------TTCCEEECTTSCCC-----------BCG-GGTTCTTCCEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCC------CCCCEEEccCCccC-----------ccc-cccCCCCCCEEEccCC
Confidence 6666777777777777665443 2222 45777777777666 333 2566777777777777
Q ss_pred ee
Q 047429 275 QL 276 (466)
Q Consensus 275 ~l 276 (466)
.+
T Consensus 228 ~i 229 (308)
T 1h6u_A 228 TI 229 (308)
T ss_dssp EE
T ss_pred ee
Confidence 66
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-22 Score=188.26 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=165.1
Q ss_pred CCccEEEcCCCCCCchhhh---hhhcccCCCcEEEccCCccccCCChhhh--hcCCcccccc-cccccccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYH---CLSHISKSLVYLDLSNNQLQGPTPDYAF--RNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~---~l~~l~~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
..++.+.+.++.++..... .+... ++|++|++++|.+.+..|. .+ ..+++|++|+ +.|.+++. .+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~----~~~~- 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATG----RSWL- 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSST----TSSH-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccch----hhhh-
Confidence 4577888888877643221 12234 6789999999988877777 65 7788888888 88887763 1100
Q ss_pred cCccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccc---hh-hhhccccccccccceEecCCcc
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLP---EL-FLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~-~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
....+..+++|++|++++|.+..+ +..+..+++|++|++++|++.+... .. +..+ ++|++|++++|+
T Consensus 137 --~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l------~~L~~L~Ls~N~ 208 (310)
T 4glp_A 137 --AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF------PAIQNLALRNTG 208 (310)
T ss_dssp --HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS------CCCCSCBCCSSC
T ss_pred --HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC------CCCCEEECCCCC
Confidence 002345788999999999999884 4688899999999999999864311 11 1122 579999999999
Q ss_pred ccccCCCCcccccccCc----ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCC---CCccEEEccCCCCCCCchhh
Q 047429 242 LSGSLPGVTELDGTFPK----QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS---PMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~----~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~ 314 (466)
++ .++. .+..+++|++|++++| .+++..|..+..+ ++|++|+|++|.++ .+|..
T Consensus 209 l~-----------~l~~~~~~l~~~l~~L~~L~Ls~N-------~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 209 ME-----------TPTGVCAALAAAGVQPHSLDLSHN-------SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp CC-----------CHHHHHHHHHHHTCCCSSEECTTS-------CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred CC-----------chHHHHHHHHhcCCCCCEEECCCC-------CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 97 3332 2567899999999995 4455557777666 69999999999998 45543
Q ss_pred hhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCc
Q 047429 315 LNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIP 394 (466)
Q Consensus 315 ~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip 394 (466)
+. ++|++|||++|+++ .+|
T Consensus 270 ~~------------------------------------------------~~L~~L~Ls~N~l~-------------~~~ 288 (310)
T 4glp_A 270 LP------------------------------------------------AKLRVLDLSSNRLN-------------RAP 288 (310)
T ss_dssp CC------------------------------------------------SCCSCEECCSCCCC-------------SCC
T ss_pred hc------------------------------------------------CCCCEEECCCCcCC-------------CCc
Confidence 32 34489999999999 333
Q ss_pred ccccCCCCCCeeeccCCcCcc
Q 047429 395 RSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 395 ~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
. +..+++|+.|++++|+++.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 5778999999999999973
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-23 Score=212.70 Aligned_cols=337 Identities=11% Similarity=0.037 Sum_probs=203.6
Q ss_pred cCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
..+++|++|+|++|.+++... ...+..+++|++|++++|.++... .++..+.. +++|++|++++|.+.+.+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~l~--- 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN-CRSLVSVKVGDFEILELV--- 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH-CTTCCEEECSSCBGGGGH---
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh-CCCCcEEeccCccHHHHH---
Confidence 478999999999999876532 245678999999999999987431 22333344 899999999999877643
Q ss_pred cccccCCCCCccEEEcCCCCCC---chhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLS---NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKC 160 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~ 160 (466)
..+.. +++|++|+++.+... ...+..+..+ ++|+.|+++++... ..+. .+..+++|++|+ +.|.++...
T Consensus 237 ~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~-- 309 (592)
T 3ogk_B 237 GFFKA--AANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETED-- 309 (592)
T ss_dssp HHHHH--CTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHH--
T ss_pred HHHhh--hhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHH--
Confidence 35566 788888888754322 1223345555 77788877775432 4454 666777788887 766654431
Q ss_pred CCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeC-----------CcCCCccchhhhhccccc
Q 047429 161 SLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHD-----------NILTAKLPELFLNFSAGC 227 (466)
Q Consensus 161 ~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~ 227 (466)
+. ..+..+++|++|+++ +.+.. ++.....+++|++|++++ +.+++.....+...
T Consensus 310 -~~-------~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---- 376 (592)
T 3ogk_B 310 -HC-------TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---- 376 (592)
T ss_dssp -HH-------HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH----
T ss_pred -HH-------HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh----
Confidence 11 234667778888777 44433 444445667788888773 44443222211111
Q ss_pred cccccceEecCCccccccCCCCcccccccCcccC-CCCCCcEEeCCCCeeeeeccccccc-----CCCCCCCCCCccEEE
Q 047429 228 AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC-RPSSLVELDLESNQLWLRFNHINGS-----ATPKLCSSPMLQVLD 301 (466)
Q Consensus 228 ~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~-~l~~L~~L~L~~n~l~l~~n~~~~~-----~~~~~~~l~~L~~L~ 301 (466)
.++|++|+++.|.+++.. +..+. .+++|+.|+++++. ..|.+++. ++..+..+++|++|+
T Consensus 377 -~~~L~~L~l~~~~l~~~~----------~~~l~~~~~~L~~L~l~~~~---~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 377 -CQELEYMAVYVSDITNES----------LESIGTYLKNLCDFRLVLLD---REERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp -CTTCSEEEEEESCCCHHH----------HHHHHHHCCSCCEEEEEECS---CCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred -CccCeEEEeecCCccHHH----------HHHHHhhCCCCcEEEEeecC---CCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 146777777777766321 12232 36677777775211 01333331 222345577777777
Q ss_pred ccCCC--CCCCchhhhhh-hhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 302 FSHNN--ISGMVPTCLNN-LSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 302 Ls~N~--l~~~~p~~~~~-l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+++|. +++..+..+.. +++|+.|+++++-.. ..........+++|+.|+|++|.++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~---------------------~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES---------------------DEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS---------------------HHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCC---------------------HHHHHHHHhcCcccCeeeccCCCCc
Confidence 76543 55544444443 566666653322110 0001112345788899999999986
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
+... +..+..+++|++|+|++|++++.
T Consensus 502 ~~~~-----------~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 502 ERAI-----------AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHH-----------HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHH-----------HHHHHhcCccCeeECcCCcCCHH
Confidence 4322 22345789999999999998753
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-22 Score=193.19 Aligned_cols=200 Identities=20% Similarity=0.197 Sum_probs=124.7
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCC--CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch-hhhhhhc
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGL--PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS-AYHCLSH 115 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~ 115 (466)
.++.++++++.+.. ..+.. + ++++.|++++|.+.+..+ .+.. +++|++|++++|.+++. .+..+..
T Consensus 48 ~~~~l~l~~~~~~~-----~~~~~-~~~~~l~~L~l~~n~l~~~~~---~~~~--~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-----DVTGR-LLSQGVIAFRCPRSFMDQPLA---EHFS--PFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCCH-----HHHHH-HHHTTCSEEECTTCEECSCCC---SCCC--CBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCCH-----HHHHh-hhhccceEEEcCCccccccch---hhcc--CCCCCEEEccCCCcCHHHHHHHHhh
Confidence 36777777776652 12233 3 677777777777766554 2334 67777777777777654 5566666
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCC-cCCC--C
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITG--I 192 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~--~ 192 (466)
+ ++|++|++++|.+.+..+. .+..+++|++|++++| .+++ +
T Consensus 117 ~-~~L~~L~L~~~~l~~~~~~-----------------------------------~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 117 C-SKLQNLSLEGLRLSDPIVN-----------------------------------TLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp B-CCCSEEECTTCBCCHHHHH-----------------------------------HHTTCTTCSEEECTTCBSCCHHHH
T ss_pred C-CCCCEEeCcCcccCHHHHH-----------------------------------HHhcCCCCCEEECCCCCCCCHHHH
Confidence 6 7777777777766543332 3444566677777766 4553 4
Q ss_pred CcccCCCCCcCEEEeeCC-cCCCc-cchhhhhcccccccc-ccceEecCCcc--ccccCCCCcccccccCcccCCCCCCc
Q 047429 193 PKSFGDMCCLKTLKIHDN-ILTAK-LPELFLNFSAGCAKK-SLQSFMLQNNM--LSGSLPGVTELDGTFPKQFCRPSSLV 267 (466)
Q Consensus 193 ~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~~~~-~L~~L~L~~n~--l~~~~~~~~~l~~~lp~~~~~l~~L~ 267 (466)
+..+..+++|++|++++| .+++. .+..+... + +|++|++++|. +++. .+|..+..+++|+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l------~~~L~~L~l~~~~~~~~~~---------~l~~~~~~~~~L~ 225 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV------SETITQLNLSGYRKNLQKS---------DLSTLVRRCPNLV 225 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS------CTTCCEEECCSCGGGSCHH---------HHHHHHHHCTTCS
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc------ccCCCEEEeCCCcccCCHH---------HHHHHHhhCCCCC
Confidence 455566677777777777 66543 23333333 4 67777777773 3311 3444566677788
Q ss_pred EEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 268 ELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 268 ~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
+|++++|. .+++..+..+..+++|++|++++|.
T Consensus 226 ~L~l~~~~------~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSV------MLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCT------TCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCCC------cCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 88887743 1444556667777888888888875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-23 Score=212.43 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=163.2
Q ss_pred cCCcCCcEEeCCCccccccchHHHhh-cCCCCcEEEccCC-CCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLS-YHNKLTSLSLQGL-DLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
..+++|++|++++|.+++..+ ..+. .+++|++|+|++| .++... ...+...+++|++|++++|.+++... ..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~--l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDG--LAAIAATCRNLKELDLRESDVDDVSG--HWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHH--HHHHHHHCTTCCEEECTTCEEECCCG--GGG
T ss_pred HhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHH--HHHHHHhCCCCCEEeCcCCccCCcch--HHH
Confidence 467889999999998887766 5554 6899999999998 444321 33444338999999999998776543 122
Q ss_pred c--cCCCCCccEEEcCCCC--CCchhhh-hhhcccCCCcEEEccCC-ccccCCChhhhhcCCcccccc-cccc-------
Q 047429 88 V--NSSSSSLTHLHLSLCG--LSNSAYH-CLSHISKSLVYLDLSNN-QLQGPTPDYAFRNMTSLASLT-SLNY------- 153 (466)
Q Consensus 88 ~--~~~l~~L~~L~Ls~n~--l~~~~~~-~l~~l~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~-~~n~------- 153 (466)
. ...+++|++|++++|. +...... .+..+ ++|++|++++| .+.+ .+. .+..+++|+.|. ..+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEK-LAT-LLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC-TTCCEEECCTTSCHHH-HHH-HHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC-CCCcEEecCCCCcHHH-HHH-HHhcCCcceEcccccccCccchhh
Confidence 1 1126789999999986 4322222 23455 88999999988 3332 444 666777777776 3321
Q ss_pred -------------------cccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcC
Q 047429 154 -------------------ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNIL 212 (466)
Q Consensus 154 -------------------l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l 212 (466)
+.......++ ..+..+++|++|++++|.++. ++..+..+++|++|++++| +
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~ 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLP-------AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGG-------GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHH-------HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c
Confidence 0011000111 233356788888888888665 3334567788888888877 3
Q ss_pred CCccchhhhhccccccccccceEecCC---------ccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccc
Q 047429 213 TAKLPELFLNFSAGCAKKSLQSFMLQN---------NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHI 283 (466)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~ 283 (466)
+......+... .++|++|++++ +.+++. .+......+++|++|++..| .+
T Consensus 326 ~~~~l~~l~~~-----~~~L~~L~L~~~~~~g~~~~~~l~~~---------~l~~l~~~~~~L~~L~~~~~-------~l 384 (594)
T 2p1m_B 326 EDAGLEVLAST-----CKDLRELRVFPSEPFVMEPNVALTEQ---------GLVSVSMGCPKLESVLYFCR-------QM 384 (594)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEECSCTTCSSCSSCCCHH---------HHHHHHHHCTTCCEEEEEES-------CC
T ss_pred CHHHHHHHHHh-----CCCCCEEEEecCcccccccCCCCCHH---------HHHHHHHhchhHHHHHHhcC-------Cc
Confidence 32111111111 14688887733 333321 11111223567777766553 33
Q ss_pred cccCCCCCC-CCCCccEEEcc--C----CCCCCCc-----hhhhhhhhhhhhcCCCC
Q 047429 284 NGSATPKLC-SSPMLQVLDFS--H----NNISGMV-----PTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 284 ~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~~~~l~~L~~l~~~n 328 (466)
++..+..+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 333333332 46677777777 3 4454221 12245556666666543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-22 Score=192.16 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=156.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcC--CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCC-Ccccccccc
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYH--NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKI-NYRSHSLVN 89 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~ 89 (466)
..++.+|++++.+.. ..+..+ ++++.|++++|.+.+. +..++. +++|++|++++|.++.. .+ ..+..
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~-~~~L~~L~L~~~~l~~~~~~--~~~~~ 116 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQP---LAEHFS-PFRVQHMDLSNSVIEVSTLH--GILSQ 116 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSC---CCSCCC-CBCCCEEECTTCEECHHHHH--HHHTT
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCcccccc---chhhcc-CCCCCEEEccCCCcCHHHHH--HHHhh
Confidence 348899999998873 456666 8999999999999887 334555 89999999999987653 22 34556
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCC-ccccC-CChhhhhcCCcccccccccccccccccCCCcccc
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNN-QLQGP-TPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n-~l~~~-~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~ 167 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++| .+++. .+
T Consensus 117 --~~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~-------------------------------- 161 (336)
T 2ast_B 117 --CSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQ-------------------------------- 161 (336)
T ss_dssp --BCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHH--------------------------------
T ss_pred --CCCCCEEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHH--------------------------------
Confidence 8999999999999998888889988 99999999999 56532 12
Q ss_pred CccccccCCCccCEEecCCC-cCCC--CCcccCCCC-CcCEEEeeCC--cCC-CccchhhhhccccccccccceEecCCc
Q 047429 168 RPKYAFSNVTSLMDLDLSKN-QITG--IPKSFGDMC-CLKTLKIHDN--ILT-AKLPELFLNFSAGCAKKSLQSFMLQNN 240 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n-~l~~--~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~~~~~~~~~~L~~L~L~~n 240 (466)
..+..+++|++|++++| .+++ ++..+..++ +|++|++++| .++ +..+..+... ++|+.|++++|
T Consensus 162 ---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~------~~L~~L~l~~~ 232 (336)
T 2ast_B 162 ---TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------PNLVHLDLSDS 232 (336)
T ss_dssp ---HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC------TTCSEEECTTC
T ss_pred ---HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC------CCCCEEeCCCC
Confidence 22344566777777777 6665 455566677 7777777777 343 2233333333 56777777777
Q ss_pred c-ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 241 M-LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 241 ~-l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
. +++ ..+..+..+++|++|++++|. .+.......+..+++|++|++++|
T Consensus 233 ~~l~~----------~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKN----------DCFQEFFQLNYLQHLSLSRCY------DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCG----------GGGGGGGGCTTCCEEECTTCT------TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCH----------HHHHHHhCCCCCCEeeCCCCC------CCCHHHHHHHhcCCCCCEEeccCc
Confidence 7 442 223456677888888888752 222222235677888888888888
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=178.56 Aligned_cols=208 Identities=20% Similarity=0.323 Sum_probs=163.9
Q ss_pred EEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcE
Q 047429 43 LSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVY 122 (466)
Q Consensus 43 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~ 122 (466)
+.+..+.+.+.. .... +++|++|++++|.++..+ .+.. +++|++|++++|.+++..+ +..+ ++|++
T Consensus 24 ~~l~~~~~~~~~----~~~~-l~~L~~L~l~~~~i~~l~----~~~~--l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~ 89 (308)
T 1h6u_A 24 IAAGKSNVTDTV----TQAD-LDGITTLSAFGTGVTTIE----GVQY--LNNLIGLELKDNQITDLAP--LKNL-TKITE 89 (308)
T ss_dssp HHTTCSSTTSEE----CHHH-HHTCCEEECTTSCCCCCT----TGGG--CTTCCEEECCSSCCCCCGG--GTTC-CSCCE
T ss_pred HHhCCCCcCcee----cHHH-cCCcCEEEeeCCCccCch----hhhc--cCCCCEEEccCCcCCCChh--HccC-CCCCE
Confidence 345566665542 2234 789999999999988763 3556 8999999999999987655 8888 99999
Q ss_pred EEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCC
Q 047429 123 LDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC 201 (466)
Q Consensus 123 L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 201 (466)
|++++|.+.+. . .+..+++|+.|+ +.|.+++. ..+..+++|++|++++|.+++++. +..+++
T Consensus 90 L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 152 (308)
T 1h6u_A 90 LELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDV-------------TPLAGLSNLQVLYLDLNQITNISP-LAGLTN 152 (308)
T ss_dssp EECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred EEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCCc-------------hhhcCCCCCCEEECCCCccCcCcc-ccCCCC
Confidence 99999998853 3 688899999999 88888774 357888999999999999988765 788899
Q ss_pred cCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecc
Q 047429 202 LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFN 281 (466)
Q Consensus 202 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n 281 (466)
|++|++++|.+++..+ +..+ ++|+.|++++|.++ .++. +..+++|++|++++|++
T Consensus 153 L~~L~l~~n~l~~~~~--l~~l------~~L~~L~l~~n~l~-----------~~~~-l~~l~~L~~L~L~~N~l----- 207 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLTP--LANL------SKLTTLKADDNKIS-----------DISP-LASLPNLIEVHLKNNQI----- 207 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTC------TTCCEEECCSSCCC-----------CCGG-GGGCTTCCEEECTTSCC-----
T ss_pred ccEEEccCCcCCCChh--hcCC------CCCCEEECCCCccC-----------cChh-hcCCCCCCEEEccCCcc-----
Confidence 9999999999886544 3333 57999999999988 4443 77888999999999665
Q ss_pred cccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 282 HINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 282 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
+ .++ .+..+++|++|++++|.+++.
T Consensus 208 --~-~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 208 --S-DVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp --C-BCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred --C-ccc-cccCCCCCCEEEccCCeeecC
Confidence 3 233 378889999999999998753
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=173.27 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCC
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMT 143 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~ 143 (466)
+|++|++++|.++.+++ ..+.. +++|++|++++|. ++...+..|..+ ++|++|++++ |.+++..+
T Consensus 32 ~l~~L~l~~n~l~~i~~--~~~~~--l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~-------- 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--HAFSN--LPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDP-------- 98 (239)
T ss_dssp TCCEEEEESCCCSEECT--TTTTT--CTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECT--------
T ss_pred cccEEEEeCCcceEECH--HHccC--CCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCH--------
Confidence 55555555555554443 33444 5555555555554 444444444444 5555555554 54442222
Q ss_pred cccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcC---EEEeeCC-cCCCccchh
Q 047429 144 SLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLK---TLKIHDN-ILTAKLPEL 219 (466)
Q Consensus 144 ~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~ 219 (466)
..|..+++|++|++++|.++++|. +..+++|+ +|++++| .+++..+..
T Consensus 99 ---------------------------~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 99 ---------------------------DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp ---------------------------TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred ---------------------------HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCccc
Confidence 345566677777777777776665 66666666 7777777 666555554
Q ss_pred hhhccccccccccc-eEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCC-CCc
Q 047429 220 FLNFSAGCAKKSLQ-SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS-PML 297 (466)
Q Consensus 220 ~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l-~~L 297 (466)
|..+ ++|+ .|++++|.++ .+|......++|++|++++|+ .+++..+..|..+ ++|
T Consensus 151 ~~~l------~~L~~~L~l~~n~l~-----------~i~~~~~~~~~L~~L~L~~n~------~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 151 FQGL------CNETLTLKLYNNGFT-----------SVQGYAFNGTKLDAVYLNKNK------YLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp TTTT------BSSEEEEECCSCCCC-----------EECTTTTTTCEEEEEECTTCT------TCCEECTTTTTTCSBCC
T ss_pred ccch------hcceeEEEcCCCCCc-----------ccCHhhcCCCCCCEEEcCCCC------CcccCCHHHhhccccCC
Confidence 5444 4577 7777777776 444433333677777777742 1333445566677 777
Q ss_pred cEEEccCCCCCCCchh
Q 047429 298 QVLDFSHNNISGMVPT 313 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~ 313 (466)
++|++++|++++..+.
T Consensus 208 ~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSK 223 (239)
T ss_dssp SEEECTTCCCCCCCCT
T ss_pred cEEECCCCccccCChh
Confidence 7777777777754443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=182.76 Aligned_cols=217 Identities=20% Similarity=0.204 Sum_probs=151.6
Q ss_pred CEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc
Q 047429 68 RELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147 (466)
Q Consensus 68 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 147 (466)
++++.+++.++.++. .+ .+++++|+|++|+|+.+.+..|.++ ++|++|+|++|.+.+.++...|.+++++.+
T Consensus 12 ~~v~C~~~~Lt~iP~---~l----~~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS---DL----PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCT---TC----CTTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCc---Cc----CCCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 456667777766554 11 3467777777777776655667777 777888887777755555436677777665
Q ss_pred cc--cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeC-CcCCCccchhhhhc
Q 047429 148 LT--SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHD-NILTAKLPELFLNF 223 (466)
Q Consensus 148 L~--~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~ 223 (466)
+. ..|.++.. .+ ..|..+++|++|++++|.+..++. .+....++..|++.+ +.+....+..|...
T Consensus 84 ~l~~~~N~l~~l----~~-------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 84 IRIEKANNLLYI----NP-------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp EEEEEETTCCEE----CT-------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hhcccCCccccc----Cc-------hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 44 56666665 33 578888999999999999988654 555667788888866 46665554444333
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
+..++.|++++|+++ .+|.......+|+.+++.++ |.++...+..|..+++|++||++
T Consensus 153 -----~~~l~~L~L~~N~i~-----------~i~~~~f~~~~L~~l~l~~~------n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 153 -----SFESVILWLNKNGIQ-----------EIHNSAFNGTQLDELNLSDN------NNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp -----BSSCEEEECCSSCCC-----------EECTTSSTTEEEEEEECTTC------TTCCCCCTTTTTTEECCSEEECT
T ss_pred -----chhhhhhcccccccc-----------CCChhhccccchhHHhhccC------CcccCCCHHHhccCcccchhhcC
Confidence 135888999999998 66666666778999999753 44444444578899999999999
Q ss_pred CCCCCCCchhhhhhhhhhhhcC
Q 047429 304 HNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
+|+++...+..|.++++|+.++
T Consensus 211 ~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 211 RTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp TSCCCCCCSSSCTTCCEEECTT
T ss_pred CCCcCccChhhhccchHhhhcc
Confidence 9999977666677766665444
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=167.98 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=144.0
Q ss_pred CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccCCCCCccEEEcCC-CCCCchhhhhhhc
Q 047429 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNSSSSSLTHLHLSL-CGLSNSAYHCLSH 115 (466)
Q Consensus 38 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~ 115 (466)
.+|++|++++|+++.+ +...+..+++|++|++++|. ++.+++ ..+.. +++|++|++++ |.++...+..|..
T Consensus 31 ~~l~~L~l~~n~l~~i---~~~~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~--l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI---PSHAFSNLPNISRIYVSIDVTLQQLES--HSFYN--LSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEE---CTTTTTTCTTCCEEEEECCSSCCEECT--TTEES--CTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CcccEEEEeCCcceEE---CHHHccCCCCCcEEeCCCCCCcceeCH--hHcCC--CcCCcEEECCCCCCeeEcCHHHhCC
Confidence 4899999999999987 43344449999999999997 887776 56777 99999999998 9999887788888
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCC-cCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~ 194 (466)
+ ++|++|++++|.+++ +|. +..+++ +..|++|++++| .++.++.
T Consensus 104 l-~~L~~L~l~~n~l~~-lp~--~~~l~~-------------------------------L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 104 L-PLLKFLGIFNTGLKM-FPD--LTKVYS-------------------------------TDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp C-TTCCEEEEEEECCCS-CCC--CTTCCB-------------------------------CCSEEEEEEESCTTCCEECT
T ss_pred C-CCCCEEeCCCCCCcc-ccc--cccccc-------------------------------cccccEEECCCCcchhhcCc
Confidence 8 999999999999874 332 222222 122337788887 7777543
Q ss_pred -ccCCCCCcC-EEEeeCCcCCCccchhhhhccccccccccceEecCCcc-ccccCCCCcccccccC-cccCCC-CCCcEE
Q 047429 195 -SFGDMCCLK-TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM-LSGSLPGVTELDGTFP-KQFCRP-SSLVEL 269 (466)
Q Consensus 195 -~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~~lp-~~~~~l-~~L~~L 269 (466)
.|..+++|+ +|++++|+++...+..+.. ++|+.|++++|+ ++ .+| ..|..+ ++|+.|
T Consensus 149 ~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-------~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNG-------TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp TTTTTTBSSEEEEECCSCCCCEECTTTTTT-------CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEE
T ss_pred ccccchhcceeEEEcCCCCCcccCHhhcCC-------CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEE
Confidence 577778888 8888888777433332211 368888888884 76 333 346777 888888
Q ss_pred eCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 270 ~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
++++|.+ + .+|.. .+++|+.|+++++
T Consensus 211 ~l~~N~l-------~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTSV-------T-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCCC-------C-CCCCT--TCTTCSEEECTTC
T ss_pred ECCCCcc-------c-cCChh--HhccCceeeccCc
Confidence 8888655 2 44443 5677888888765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=166.18 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=98.1
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..++++++++.++... ..+ .++++.|+|++|.++... +..+.. +++|++|++++|.+++..+ ..+.. ++
T Consensus 15 ~~~~l~~~~~~l~~~p--~~~--~~~l~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP--SGI--PADTEKLDLQSTGLATLS--DATFRG-LTKLTWLNLDYNQLQTLSA--GVFDD--LT 83 (251)
T ss_dssp GGTEEECTTCCCSSCC--SCC--CTTCCEEECTTSCCCCCC--TTTTTT-CTTCCEEECTTSCCCCCCT--TTTTT--CT
T ss_pred CCeEEecCCCCccccC--CCC--CCCCCEEEccCCCcCccC--HhHhcC-cccCCEEECCCCcCCccCH--hHhcc--CC
Confidence 4556666666665432 122 145666666666666652 222333 6666666666666666555 34555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+++..+. .|..+++|+.|+ +.|.+++. .+ ..
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~ 150 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSI----PA-------GA 150 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT-------TT
T ss_pred cCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChh-HhccCCcccEEECcCCcCCcc----CH-------HH
Confidence 66666666666665555556666 6666666666666643333 445555555555 55555443 11 23
Q ss_pred ccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCc
Q 047429 173 FSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAK 215 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~ 215 (466)
+..+++|++|++++|.+++++ ..+..+++|++|++++|.++..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 445555555555555555533 2445555555555555555443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=163.17 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=132.9
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 144 (466)
...++++++++.++.++.. + .+++++|++++|.+++..+..+..+ ++|++|++++|.+.+..+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~---~----~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~--------- 76 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG---I----PADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSA--------- 76 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC---C----CTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCT---------
T ss_pred CCCeEEecCCCCccccCCC---C----CCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCH---------
Confidence 3566777777777765541 1 3467777777777776666667776 777777777777664332
Q ss_pred ccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhc
Q 047429 145 LASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNF 223 (466)
Q Consensus 145 L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 223 (466)
..+..+++|++|++++|.++.++ ..|..+++|++|++++|++++..+..+..+
T Consensus 77 --------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 77 --------------------------GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp --------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred --------------------------hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 34566778888888888888854 467788888888888888887666655554
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
++|+.|++++|+++ .+|. .|..+++|++|++++|+ +++..+..+..+++|++|++
T Consensus 131 ------~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 131 ------TKLKELRLNTNQLQ-----------SIPAGAFDKLTNLQTLSLSTNQ-------LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp ------TTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEEC
T ss_pred ------CcccEEECcCCcCC-----------ccCHHHcCcCcCCCEEECCCCc-------CCccCHHHHhCCCCCCEEEe
Confidence 57888999998887 4443 58888999999999954 45555667889999999999
Q ss_pred cCCCCCCCch
Q 047429 303 SHNNISGMVP 312 (466)
Q Consensus 303 s~N~l~~~~p 312 (466)
++|.+.+...
T Consensus 187 ~~N~~~c~~~ 196 (251)
T 3m19_A 187 FGNQFDCSRC 196 (251)
T ss_dssp CSCCBCTTST
T ss_pred eCCceeCCcc
Confidence 9999987633
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=173.75 Aligned_cols=240 Identities=16% Similarity=0.087 Sum_probs=175.4
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
++++.++++++.+ | ..+ .+++++|+|++|+|+.+ +...+.++++|++|+|++|.+.+..+. ..|.. ++++
T Consensus 12 ~~v~C~~~~Lt~i-P-~~l--~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~--L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEI-P-SDL--PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSN--LPKL 81 (350)
T ss_dssp TEEEEESTTCCSC-C-TTC--CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECT-TSBCS--CTTC
T ss_pred CEEEecCCCCCcc-C-cCc--CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccCh-hHhhc--chhh
Confidence 6788888888854 4 333 36799999999999987 545555599999999999998654331 45666 7777
Q ss_pred cE-EEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc--cccccccccccCCCccccCcccc
Q 047429 96 TH-LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT--SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 96 ~~-L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~--~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++ +.+..|+++...+..|..+ ++|++|++++|.+....+. .+....++..|+ ..+.+.... + ..
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~----~-------~~ 148 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIE----R-------NS 148 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEEC----T-------TS
T ss_pred hhhhcccCCcccccCchhhhhc-cccccccccccccccCCch-hhcccchhhhhhhcccccccccc----c-------cc
Confidence 65 6677789998888889998 9999999999999865554 666666777777 445665541 1 34
Q ss_pred ccCC-CccCEEecCCCcCCCCCcccCCCCCcCEEEeeC-CcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 173 FSNV-TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD-NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 173 l~~l-~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
|..+ ..++.|++++|.++.++.......+|++|++.+ |.++...+..|..+ ++|++|++++|+++
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l------~~L~~LdLs~N~l~------- 215 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA------SGPVILDISRTRIH------- 215 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE------ECCSEEECTTSCCC-------
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccC------cccchhhcCCCCcC-------
Confidence 5554 468899999999999877666777899999975 66776555666666 67999999999998
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
.+|.. .+.+|+.|.+.++ +.+ ..+| .+..+++|+.+++.++
T Consensus 216 ----~lp~~--~~~~L~~L~~l~~------~~l-~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 ----SLPSY--GLENLKKLRARST------YNL-KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ----CCCSS--SCTTCCEEECTTC------TTC-CCCC-CTTTCCSCCEEECSCH
T ss_pred ----ccChh--hhccchHhhhccC------CCc-CcCC-CchhCcChhhCcCCCC
Confidence 66653 2345555555442 222 3555 4788899999998754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-21 Score=198.78 Aligned_cols=339 Identities=13% Similarity=0.097 Sum_probs=198.1
Q ss_pred CCcCCcEEeCCCc-cccccchHHHhhcCCCCcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcc-cc-c
Q 047429 11 SLEDLQSINIGLN-AIRVRKFDQWLSYHNKLTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYR-SH-S 86 (466)
Q Consensus 11 ~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~ 86 (466)
.+++|++|++++| .+........+..+++|++|++++|.+++.. .+...+...+++|++|++++|. ...... .. .
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence 6889999999999 5655444355568999999999999876642 2233344347899999999986 222210 01 1
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc--------------------------ccc----CCCh
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ--------------------------LQG----PTPD 136 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~--------------------------l~~----~~~~ 136 (466)
... +++|++|++++|.-....+..+..+ ++|++|+++.+. +.. ..+.
T Consensus 207 ~~~--~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 207 VTR--CPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHH--CTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHh--CCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 233 6899999999883322356666677 788888765542 111 1222
Q ss_pred hhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeC----
Q 047429 137 YAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHD---- 209 (466)
Q Consensus 137 ~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~---- 209 (466)
.+..+++|++|+ +.|.++... +. ..+..+++|++|++++| +.. ++.....+++|++|++..
T Consensus 284 -~~~~~~~L~~L~L~~~~l~~~~---l~-------~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 284 -VYSVCSRLTTLNLSYATVQSYD---LV-------KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp -GHHHHTTCCEEECTTCCCCHHH---HH-------HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred -HHHhhCCCCEEEccCCCCCHHH---HH-------HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 233567888888 777765431 11 23557788888888887 433 333334577888888844
Q ss_pred -----CcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccc
Q 047429 210 -----NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN 284 (466)
Q Consensus 210 -----n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~ 284 (466)
+.+++.....+... + ++|+.|.+..|.+++... ......+++|+.|+++.+.. -..+.++
T Consensus 352 g~~~~~~l~~~~l~~l~~~---~--~~L~~L~~~~~~l~~~~~---------~~l~~~~~~L~~L~L~~~~~-~~~~~l~ 416 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMG---C--PKLESVLYFCRQMTNAAL---------ITIARNRPNMTRFRLCIIEP-KAPDYLT 416 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHH---C--TTCCEEEEEESCCCHHHH---------HHHHHHCTTCCEEEEEESST-TCCCTTT
T ss_pred ccccCCCCCHHHHHHHHHh---c--hhHHHHHHhcCCcCHHHH---------HHHHhhCCCcceeEeecccC-CCccccc
Confidence 33432222222111 1 568888887777763211 11123467788888872100 0002232
Q ss_pred c-----cCCCCCCCCCCccEEEccCCCCCCCchhhhhh-hhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccc
Q 047429 285 G-----SATPKLCSSPMLQVLDFSHNNISGMVPTCLNN-LSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDS 358 (466)
Q Consensus 285 ~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
+ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|+++++-. .....
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i----------------------~~~~~ 473 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD----------------------SDLGM 473 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS----------------------SHHHH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC----------------------cHHHH
Confidence 1 1112245677888888866 666555555554 66676666332211 00011
Q ss_pred h-hhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 359 I-YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 359 ~-~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
. ....+++|+.|+|++|.+++..+.. .+..+++|+.|++++|+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~-----------~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLA-----------NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHH-----------TGGGGGGSSEEEEESSCCB
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHH-----------HHHhCCCCCEEeeeCCCCC
Confidence 1 1145778888888888875321111 2345778888888888775
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-19 Score=164.85 Aligned_cols=186 Identities=22% Similarity=0.258 Sum_probs=98.6
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCcc
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLT 96 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~ 96 (466)
.+.+..+.+++... +..+++|++|++++|.+..+. .+.. +++|++|++++|.+++..+ +.. +++|+
T Consensus 28 ~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~----~~~~-l~~L~~L~L~~n~l~~~~~----l~~--l~~L~ 93 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ----GIQY-LPNVTKLFLNGNKLTDIKP----LAN--LKNLG 93 (291)
T ss_dssp HHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT----TGGG-CTTCCEEECCSSCCCCCGG----GTT--CTTCC
T ss_pred HHHhcCCCcccccc---hhhcCcccEEEccCCCcccCh----hHhc-CCCCCEEEccCCccCCCcc----ccc--CCCCC
Confidence 33444444443322 334555555566655555441 2333 5556666666665554432 333 55566
Q ss_pred EEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccC
Q 047429 97 HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSN 175 (466)
Q Consensus 97 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~ 175 (466)
+|++++|.+++. ..+..+ ++|++|++++|.+.+. . .+..+++|+.|+ +.|.+++. ..+..
T Consensus 94 ~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~~~-------------~~l~~ 154 (291)
T 1h6t_A 94 WLFLDENKVKDL--SSLKDL-KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI-------------TVLSR 154 (291)
T ss_dssp EEECCSSCCCCG--GGGTTC-TTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCC-------------GGGGG
T ss_pred EEECCCCcCCCC--hhhccC-CCCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCCcc-------------hhhcc
Confidence 666666655542 224455 5566666666655532 2 455555566665 55555543 24555
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
+++|++|++++|.+++++. +..+++|++|++++|.+++. +. +..+ ++|+.|++++|.++.
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~-l~~l------~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RA-LAGL------KNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GG-GTTC------TTCSEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hh-hccC------CCCCEEECcCCcccC
Confidence 6666666666666666543 56666666666666666543 22 2222 456666666666653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=176.12 Aligned_cols=189 Identities=24% Similarity=0.301 Sum_probs=148.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+|++|++++|.+++++. .+ .++|++|++++|.++. +| ..+ ++|++|++++|.+++ +|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~---~l----~~~L~~L~Ls~N~l~~-ip---~~l-~~L~~L~Ls~N~l~~-ip~--l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD---NL----PPQITVLEITQNALIS-LP---ELP-ASLEYLDACDNRLST-LPE--LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCS---CC----CTTCSEEECCSSCCSC-CC---CCC-TTCCEEECCSSCCSC-CCC--CCT--TC
T ss_pred CccEEEeCCCCCCccCH---hH----cCCCCEEECcCCCCcc-cc---ccc-CCCCEEEccCCCCCC-cch--hhc--CC
Confidence 88888888888887554 12 3578888888888874 44 234 788888888888875 554 333 78
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
+.|+ +.|.+++ +| . .+++|+.|++++|.++++|. .+++|++|++++|.+++ +|. +.
T Consensus 123 ~~L~Ls~N~l~~-----lp-------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--- 179 (571)
T 3cvr_A 123 KHLDVDNNQLTM-----LP-------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--- 179 (571)
T ss_dssp CEEECCSSCCSC-----CC-------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC---
T ss_pred CEEECCCCcCCC-----CC-------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh---
Confidence 8888 8888776 44 2 57899999999999999887 57899999999999987 444 32
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCC-------cEEeCCCCeeeeecccccccCCCCCCCCCCc
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL-------VELDLESNQLWLRFNHINGSATPKLCSSPML 297 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L-------~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L 297 (466)
++|+.|++++|.|+ .+|. +.. +| +.|+|++|.| ..+|..+..+++|
T Consensus 180 -----~~L~~L~Ls~N~L~-----------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--------~~lp~~l~~l~~L 232 (571)
T 3cvr_A 180 -----ESLEALDVSTNLLE-----------SLPA-VPV--RNHHSEETEIFFRCRENRI--------THIPENILSLDPT 232 (571)
T ss_dssp -----TTCCEEECCSSCCS-----------SCCC-CC----------CCEEEECCSSCC--------CCCCGGGGGSCTT
T ss_pred -----CCCCEEECcCCCCC-----------chhh-HHH--hhhcccccceEEecCCCcc--------eecCHHHhcCCCC
Confidence 47999999999998 5565 443 66 9999999766 4688888889999
Q ss_pred cEEEccCCCCCCCchhhhhhhhhh
Q 047429 298 QVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+.|+|++|.+++.+|..|..++..
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l~~~ 256 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQTAQ 256 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHS
T ss_pred CEEEeeCCcCCCcCHHHHHHhhcC
Confidence 999999999999999999988764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=163.12 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccc
Q 047429 95 LTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 95 L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
+..+.+..+.++... .+..+ ++|++|++++|.+... + .+..+++|+.|+ +.|.+++. + .+
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~-----~--------~l 86 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNEL-NSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDI-----K--------PL 86 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHH-HTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCC-----G--------GG
T ss_pred HHHHHhcCCCccccc--chhhc-CcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCC-----c--------cc
Confidence 334445555554332 22344 6667777777766532 2 244444444444 44444432 1 13
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+++|++|++++|.+++++. +..+++|++|++++|.++
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC
Confidence 444444444444444444322 444444444444444444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=153.61 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
++|++|++++|.++..++ ..+.. +++|++|++++|.++...+..|..+ ++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN--GVFDE--LTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQLQ 89 (208)
T ss_dssp TTCSEEECCSSCCCCCCT--TTTTT--CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred CCCcEEEcCCCccCcCCh--hhhcc--cccCcEEECCCCccCccChhhcCCC-CCcCEEECCCCcCC
Confidence 345555555555544433 23333 4455555555555544433344444 45555555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=172.54 Aligned_cols=186 Identities=30% Similarity=0.379 Sum_probs=147.7
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++++|++++|.+++ +|..+ . ++|++|++++|.++ .+| ..+++|+.|+ +.|.+++ +| .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~-~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-----ip-------~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--P-PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-----LP-------E- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--C-TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-----CC-------C-
T ss_pred CccEEEeCCCCCCc-cCHhH--c-CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-----cc-------h-
Confidence 89999999999987 55544 2 78999999999998 555 3478899999 9998887 44 3
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+.. +|++|++++|.++++|. .+++|++|++++|.+++ +|. . +++|+.|++++|.++
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~------l~~L~~L~Ls~N~L~--------- 173 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---L------PTSLEVLSVRNNQLT--------- 173 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---C------CTTCCEEECCSSCCS---------
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---c------CCCcCEEECCCCCCC---------
Confidence 333 89999999999999887 68899999999999986 443 1 257999999999998
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCc-------cEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPML-------QVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
.+|. +. ++|++|+|++|.| ..+|. +.. +| +.|+|++|.|+ .+|..+..+++|
T Consensus 174 --~lp~-l~--~~L~~L~Ls~N~L--------~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L---- 232 (571)
T 3cvr_A 174 --FLPE-LP--ESLEALDVSTNLL--------ESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT---- 232 (571)
T ss_dssp --CCCC-CC--TTCCEEECCSSCC--------SSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT----
T ss_pred --Ccch-hh--CCCCEEECcCCCC--------Cchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC----
Confidence 5566 54 8999999999766 35555 443 66 99999999998 467666655555
Q ss_pred CCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 326 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
+.|+|++|.+++.+|..+..+
T Consensus 233 ------------------------------------------~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 233 ------------------------------------------CTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ------------------------------------------EEEECCSSSCCHHHHHHHHHH
T ss_pred ------------------------------------------CEEEeeCCcCCCcCHHHHHHh
Confidence 899999999999888887764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=151.74 Aligned_cols=172 Identities=24% Similarity=0.249 Sum_probs=130.7
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
+.++++++.++.... ...++|++|++++|.++.+ +...+..+++|++|++++|.++..++ ..+.. +++|
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~--l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLGGNKLQSLPN--GVFNK--LTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCT--TTTTT--CTTC
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcC---ChhhhcccccCcEEECCCCccCccCh--hhcCC--CCCc
Confidence 578888888775432 2246899999999999877 44444449999999999999998766 45667 8999
Q ss_pred cEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccC
Q 047429 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSN 175 (466)
Q Consensus 96 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~ 175 (466)
++|++++|.+++..+..+..+ ++|++|++++|.+.+..+ ..+..
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-----------------------------------~~~~~ 122 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKL-TQLKELALNTNQLQSLPD-----------------------------------GVFDK 122 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCT-----------------------------------TTTTT
T ss_pred CEEECCCCcCCccCHhHhcCc-cCCCEEEcCCCcCcccCH-----------------------------------hHhcc
Confidence 999999999997777778888 999999999998874322 23556
Q ss_pred CCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 176 VTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
+++|++|++++|.+++++. .+..+++|++|++++|.+.+.. ++|+.|+++.|+++|.+|
T Consensus 123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------------~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------------PGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------------TTTHHHHHHHHHCTTTBB
T ss_pred CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------------CCHHHHHHHHHhCCceee
Confidence 6778888888888877554 4677888888888888776433 347778888888875443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=150.20 Aligned_cols=154 Identities=22% Similarity=0.305 Sum_probs=113.9
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccc-hhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLP-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
-+.+++++|.++.+|..+. +.+++|++++|.+++..+ ..+..+ ++|+.|++++|.+++.. +
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l------~~L~~L~L~~N~i~~i~----------~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKL------PQLRKINFSNNKITDIE----------E 74 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGC------TTCCEEECCSSCCCEEC----------T
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccC------CCCCEEECCCCcCCEEC----------H
Confidence 3578888888888877553 356888888888886644 334444 57888888888887322 2
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeec
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQL 337 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~ 337 (466)
..|..+++|++|+|++| .+++..+..|..+++|++|+|++|.+++..|..|.++++|
T Consensus 75 ~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------- 131 (220)
T 2v70_A 75 GAFEGASGVNEILLTSN-------RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV---------------- 131 (220)
T ss_dssp TTTTTCTTCCEEECCSS-------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC----------------
T ss_pred HHhCCCCCCCEEECCCC-------ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC----------------
Confidence 35788888888888884 4455555668888888888888888887777777766555
Q ss_pred cCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcc
Q 047429 338 IDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
++|+|++|++++ ..|..|..+++|+.|++++|.+.+
T Consensus 132 ------------------------------~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 132 ------------------------------RLLSLYDNQITT------------VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ------------------------------SEEECTTSCCCC------------BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ------------------------------CEEECCCCcCCE------------ECHHHhcCCCCCCEEEecCcCCcC
Confidence 888888888884 225567888888888888888874
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=172.47 Aligned_cols=174 Identities=25% Similarity=0.317 Sum_probs=98.9
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.++.+. . +.. +++|++|+|++|.+...+ .
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~Ls~N~l~~~~---~-l~~-l~~L~~L~Ls~N~l~~l~----~ 104 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIK---P-LTN-LKNLGWLFLDENKIKDLS----S 104 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCC---TTGGGCTTCCEEECTTSCCCCCG---G-GGG-CTTCCEEECCSSCCCCCT----T
T ss_pred cchhcCCCCCEEECcCCCCCCC---hHHccCCCCCEEEeeCCCCCCCh---h-hcc-CCCCCEEECcCCCCCCCh----h
Confidence 3344566666666666666543 23556666666666666666552 2 333 666666666666665532 3
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. +++|++|+|++|.+.+. ..+..+ ++|+.|+|++|.+.+. . .+..+++|+.|+ +.|.+++.
T Consensus 105 l~~--l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~-------- 168 (605)
T 1m9s_A 105 LKD--LKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI-------- 168 (605)
T ss_dssp STT--CTTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCC--------
T ss_pred hcc--CCCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCc--------
Confidence 344 56666666666666543 235555 6666666666666543 2 455566666666 55555543
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCC
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
..+..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.+.+
T Consensus 169 -----~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 -----VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred -----hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 12455566666666666665553 35556666666666665554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=148.38 Aligned_cols=152 Identities=24% Similarity=0.328 Sum_probs=114.0
Q ss_pred CEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc
Q 047429 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259 (466)
Q Consensus 180 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~ 259 (466)
+.++++++.++.+|..+. ++++.|++++|.+++..+..+..+ ++|+.|++++|.+++. .|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l------~~L~~L~Ls~N~i~~~----------~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPY------KKLRRIDLSNNQISEL----------APDA 75 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTC------TTCCEEECCSSCCCEE----------CTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCC------CCCCEEECCCCcCCCc----------CHHH
Confidence 578888888888877554 578888888888887666666555 5788888888888732 2456
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccC
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLID 339 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~ 339 (466)
|..+++|++|+|++|.| ++..+..|..+++|++|+|++|.+++..|..|.++++|
T Consensus 76 ~~~l~~L~~L~Ls~N~l-------~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------ 130 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKI-------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL------------------ 130 (220)
T ss_dssp TTTCSSCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------
T ss_pred hhCCcCCCEEECCCCcC-------CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC------------------
Confidence 88888888888888554 43444556788888888888888888777777766555
Q ss_pred CCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 340 DPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|+|++|++++ + .|..|..+++|+.|+|++|.+.
T Consensus 131 ----------------------------~~L~L~~N~l~~-~-----------~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 ----------------------------NLLSLYDNKLQT-I-----------AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----------------------------CEEECCSSCCSC-C-----------CTTTTTTCTTCCEEECCSSCEE
T ss_pred ----------------------------CEEECCCCcCCE-E-----------CHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888883 2 2335777888888888888875
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=154.95 Aligned_cols=108 Identities=17% Similarity=0.298 Sum_probs=67.2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|+++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l------~~L~~L~L~~N~l~-------- 98 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDL------TKLEELSVNRNRLK-------- 98 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC------SSCCEEECCSSCCS--------
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccC------CCCCEEECCCCccC--------
Confidence 3556667777777777776665 56667777777777777765444 3333 45777777777776
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.+|... . ++|++|++++|.+ + .+ +.+..+++|++|++++|++++.
T Consensus 99 ---~l~~~~-~-~~L~~L~L~~N~l-------~-~~-~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 99 ---NLNGIP-S-ACLSRLFLDNNEL-------R-DT-DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ---CCTTCC-C-SSCCEEECCSSCC-------S-BS-GGGTTCTTCCEEECTTSCCCBC
T ss_pred ---CcCccc-c-CcccEEEccCCcc-------C-CC-hhhcCcccccEEECCCCcCCCC
Confidence 333222 2 6677777777544 2 22 3466777777777777777643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=148.42 Aligned_cols=152 Identities=17% Similarity=0.252 Sum_probs=97.1
Q ss_pred hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhh
Q 047429 35 SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS 114 (466)
Q Consensus 35 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 114 (466)
..+++|++|++++|.++.+ + .+.. +++|++|++++|.++.. ..+.. +++|++|++++|.+++..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l---~-~l~~-l~~L~~L~l~~n~~~~~----~~l~~--l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL---T-GIEY-AHNIKDLTINNIHATNY----NPISG--LSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC---T-TGGG-CTTCSEEEEESCCCSCC----GGGTT--CTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccCh---H-HHhc-CCCCCEEEccCCCCCcc----hhhhc--CCCCCEEEeECCccCcccChhhc
Confidence 4456777778887777765 3 3445 77788888877766544 23445 77788888888777766667777
Q ss_pred cccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccc-cccccccCCCccccCccccccCCCccCEEecCCCcCCCC
Q 047429 115 HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNY-ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~-l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 192 (466)
.+ ++|++|++++|.+.+..+. .++.+++|+.|+ +.|. ++.. ..+..+++|++|++++|.++++
T Consensus 110 ~l-~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-------------~~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 110 GL-TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-------------MPLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp TC-TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-------------GGGGGCSSCCEEECTTBCCCCC
T ss_pred CC-CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-------------HhhcCCCCCCEEECCCCCCcCh
Confidence 77 7788888888777755555 555666666666 5554 4432 2355566666666666666665
Q ss_pred CcccCCCCCcCEEEeeCCcCC
Q 047429 193 PKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 193 ~~~l~~l~~L~~L~L~~n~l~ 213 (466)
+ .+..+++|++|++++|++.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGCSSCCEEEECBC---
T ss_pred H-HhccCCCCCEEEeeCcccC
Confidence 4 4556666666666666654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=161.32 Aligned_cols=174 Identities=25% Similarity=0.244 Sum_probs=100.9
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc-cCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV-NSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
+.+++++++++.+ |..+ .+.+++|+|++|.++...+ ..+. . +++|++|++++|.++...+..|..+ ++
T Consensus 21 ~~l~c~~~~l~~i---P~~~---~~~l~~L~Ls~N~l~~l~~--~~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l-~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNV---PQSL---PSYTALLDLSHNNLSRLRA--EWTPTR--LTNLHSLLLSHNHLNFISSEAFVPV-PN 89 (361)
T ss_dssp TEEECCSSCCSSC---CSSC---CTTCSEEECCSSCCCEECT--TSSSSC--CTTCCEEECCSSCCCEECTTTTTTC-TT
T ss_pred CEEEeCCCCcCcc---CccC---CCCCCEEECCCCCCCccCh--hhhhhc--ccccCEEECCCCcCCccChhhccCC-CC
Confidence 4555555555554 2221 2345556666665555444 2333 3 5556666666666655555555555 56
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc--
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF-- 196 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l-- 196 (466)
|++|+|++|.+....+. .|.++++|+.|+ +.|.++.. .+ ..|..+++|++|+|++|.++.+|..+
T Consensus 90 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~----~~-------~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVV----DR-------NAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp CCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEE----CT-------TTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEE----CH-------HHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 66666666665544433 555556666666 55555544 23 45667777778888888777766543
Q ss_pred --CCCCCcCEEEeeCCcCCCccchhhhhccccccccc--cceEecCCcccc
Q 047429 197 --GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS--LQSFMLQNNMLS 243 (466)
Q Consensus 197 --~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~--L~~L~L~~n~l~ 243 (466)
..+++|++|+|++|++++..+..+..+ +. ++.|++++|.+.
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l------~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKL------PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHS------CHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhc------cHhhcceEEecCCCcc
Confidence 457778888888888776555555443 22 467777777765
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-18 Score=165.01 Aligned_cols=107 Identities=27% Similarity=0.237 Sum_probs=47.2
Q ss_pred cCEEecCCCcCCCCC-cccC-CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc
Q 047429 179 LMDLDLSKNQITGIP-KSFG-DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF 256 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~-~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l 256 (466)
++.|+|++|.++.++ ..+. .+++|++|+|++|++++..+..|..+ ++|+.|+|++|+++ .+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l------~~L~~L~Ls~N~l~-----------~~ 103 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV------PNLRYLDLSSNHLH-----------TL 103 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC------TTCCEEECCSSCCC-----------EE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC------CCCCEEECCCCcCC-----------cC
Confidence 444555555544422 2233 44455555555555444443333333 34455555555444 22
Q ss_pred C-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 257 P-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 257 p-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+ ..|..+++|++|+|++|+ +++..+..|..+++|++|+|++|.+++
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CHHHhCCCcCCCEEECCCCc-------ccEECHHHhCCcccCCEEECCCCcCCe
Confidence 2 124444445555554422 223334444444455555555554443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=145.78 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=120.4
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
...+++|++|++++|.++.+| .+..+++|++|++++|.++.. + .+..+ ++|++|++++|.+++.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l------~~L~~L~l~~n~l~~~------- 103 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-N-PISGL------SNLERLRIMGKDVTSD------- 103 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-G-GGTTC------TTCCEEEEECTTCBGG-------
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-h-hhhcC------CCCCEEEeECCccCcc-------
Confidence 356788999999999999887 688899999999999977633 2 33333 6799999999999842
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC-CCCCchhhhhhhhhhhhcCCCCcee
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN-ISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.|..+..+++|++|++++|. +++..+..++.+++|++|++++|. ++ .+| .+..++
T Consensus 104 ---~~~~l~~l~~L~~L~Ls~n~-------i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~------------ 159 (197)
T 4ezg_A 104 ---KIPNLSGLTSLTLLDISHSA-------HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP------------ 159 (197)
T ss_dssp ---GSCCCTTCTTCCEEECCSSB-------CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS------------
T ss_pred ---cChhhcCCCCCCEEEecCCc-------cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC------------
Confidence 35568889999999999954 455567788899999999999998 65 444 455444
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
+|++|++++|+++ .+| .+..+++|+.|++++|
T Consensus 160 ----------------------------------~L~~L~l~~n~i~-------------~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 160 ----------------------------------ELKSLNIQFDGVH-------------DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ----------------------------------SCCEEECTTBCCC-------------CCT-TGGGCSSCCEEEECBC
T ss_pred ----------------------------------CCCEEECCCCCCc-------------ChH-HhccCCCCCEEEeeCc
Confidence 4499999999998 334 5889999999999999
Q ss_pred cCcc
Q 047429 412 NFSG 415 (466)
Q Consensus 412 ~l~~ 415 (466)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9863
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=168.62 Aligned_cols=190 Identities=22% Similarity=0.256 Sum_probs=128.4
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
+..+..+.+..+.+.+... +..+++|+.|++++|.+..+. .+.. +++|++|+|++|.+.+.++ +..
T Consensus 20 l~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~----~l~~-l~~L~~L~Ls~N~l~~~~~----l~~-- 85 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ----GIQY-LPNVTKLFLNGNKLTDIKP----LTN-- 85 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT----TGGG-CTTCCEEECTTSCCCCCGG----GGG--
T ss_pred HHHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh----HHcc-CCCCCEEEeeCCCCCCChh----hcc--
Confidence 3445566777777665533 456777888888888877762 3445 8888888888888877644 455
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|+|++|.+.+. ..+..+ ++|++|+|++|.+.+. . .+..+++|+.|+ +.|.+++.
T Consensus 86 l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l------------- 146 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL--SSLKDL-KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI------------- 146 (605)
T ss_dssp CTTCCEEECCSSCCCCC--TTSTTC-TTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCCCC-------------
T ss_pred CCCCCEEECcCCCCCCC--hhhccC-CCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccCCc-------------
Confidence 78888888888888753 356677 7888888888887742 3 566677777777 66666654
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.+++. +. +..+ ++|+.|+|++|.++
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~-l~~l------~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RA-LAGL------KNLDVLELFSQECL 210 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GG-GTTC------TTCSEEECCSEEEE
T ss_pred hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hH-HccC------CCCCEEEccCCcCc
Confidence 356666777777777777766544 66677777777777776643 22 2222 45777777777666
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=143.89 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=111.3
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
..+.++.+++.++.+|..+. ++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~N~l~-----------~i~ 80 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSL------INLKELYLGSNQLG-----------ALP 80 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------CCC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCc------cCCcEEECCCCCCC-----------CcC
Confidence 35678888888888777554 678888888888887777666555 57888888888886 444
Q ss_pred -cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeee
Q 047429 258 -KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336 (466)
Q Consensus 258 -~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~ 336 (466)
..|..+++|++|+|++|++ ++..+..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l-------~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------- 137 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQL-------TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL--------------- 137 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC---------------
T ss_pred hhhcccCCCcCEEECCCCcC-------CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC---------------
Confidence 3467788888888888544 4444556778888888888888887 556666555544
Q ss_pred ccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 337 LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
++|+|++|+++ .+| +..|..+++|+.|++++|.+.+.
T Consensus 138 -------------------------------~~L~L~~N~l~-~~~-----------~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 138 -------------------------------THLALDQNQLK-SIP-----------HGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -------------------------------SEEECCSSCCC-CCC-----------TTTTTTCTTCCEEECTTSCBCTT
T ss_pred -------------------------------CEEECCCCcCC-ccC-----------HHHHhCCCCCCEEEeeCCCccCC
Confidence 78888888887 222 23477788888888888887643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=156.26 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=124.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
++.+++.++++++.+++.. .+..+++|++|++++|+++.+ + .+.. +++|++|++++|.+++.++ +..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l---~-~l~~-l~~L~~L~L~~N~i~~~~~----l~~- 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL---A-GMQF-FTNLKELHLSHNQISDLSP----LKD- 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCC---T-TGGG-CTTCCEEECCSSCCCCCGG----GTT-
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccc---h-HHhh-CCCCCEEECCCCccCCChh----hcc-
Confidence 5666777888888887653 367788888888888888776 3 4455 8888888888888887644 555
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|++++..+ +.. ++|++|++++|.+++. . .+..+++|+.|+ +.|.+++.
T Consensus 84 -l~~L~~L~L~~N~l~~l~~--~~~--~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~~------------ 143 (263)
T 1xeu_A 84 -LTKLEELSVNRNRLKNLNG--IPS--ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKSI------------ 143 (263)
T ss_dssp -CSSCCEEECCSSCCSCCTT--CCC--SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCBC------------
T ss_pred -CCCCCEEECCCCccCCcCc--ccc--CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCCC------------
Confidence 7888888888888876432 211 5788888888888753 2 567777777777 77777664
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCcc
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKL 216 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~ 216 (466)
..+..+++|++|++++|.++++ ..+..+++|++|++++|.++...
T Consensus 144 -~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 -VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 3566777788888888877776 55677778888888887776543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=145.69 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
+.+++++|.++.+ |..+ .+.+++|++++|.++...+. ..+.. +++|++|++++|.+++..+..|..+ ++|
T Consensus 14 ~~l~~s~n~l~~i---P~~~---~~~~~~L~L~~N~l~~~~~~-~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l-~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKI---PEHI---PQYTAELRLNNNEFTVLEAT-GIFKK--LPQLRKINFSNNKITDIEEGAFEGA-SGV 83 (220)
T ss_dssp TEEECCSSCCSSC---CSCC---CTTCSEEECCSSCCCEECCC-CCGGG--CTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred CEeEeCCCCcccC---ccCC---CCCCCEEEcCCCcCCccCch-hhhcc--CCCCCEEECCCCcCCEECHHHhCCC-CCC
Confidence 4566666666555 2222 23456666666666655331 23444 6666666666666666555566666 666
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~ 198 (466)
++|+|++|.+++..+. .|..+++|++|+ +.|.+++. .| ..|..+++|++|+|++|.++++ |..|..
T Consensus 84 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 84 NEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCV----GN-------DSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCCB----CT-------TSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCeE----CH-------hHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 6666666666644443 555555566555 55555554 33 4566777888888888888874 667778
Q ss_pred CCCcCEEEeeCCcCCCccc
Q 047429 199 MCCLKTLKIHDNILTAKLP 217 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~ 217 (466)
+++|++|++++|.+....+
T Consensus 152 l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTCCEEECCSCCEECSGG
T ss_pred CCCCCEEEecCcCCcCCCc
Confidence 8888888888887765443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-18 Score=177.67 Aligned_cols=185 Identities=18% Similarity=0.103 Sum_probs=115.7
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++ .+|..+..+ ++|+.|+|++|.|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l------~~L~~L~Ls~N~l~------- 283 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL------SNLRVLDLSHNRLT------- 283 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG------TTCCEEECTTSCCS-------
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC------CCCCEEeCcCCcCC-------
Confidence 5788899999999999999999888889999999999999998 667766666 68999999999998
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh-cCCC-C
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSS-N 328 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-l~~~-n 328 (466)
.+|..+..+++|++|+|++|.| +.+|..|+.+++|++|+|++|.+++.+|..+..+..... +++. |
T Consensus 284 ----~lp~~~~~l~~L~~L~L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 284 ----SLPAELGSCFQLKYFYFFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp ----SCCSSGGGGTTCSEEECCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----ccChhhcCCCCCCEEECCCCCC--------CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 7788899999999999999766 578888999999999999999999999998877643321 2211 1
Q ss_pred ceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCC----cCCcCCcHHHHhhccCCCcccccCCCCCC
Q 047429 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN----NLSGKIPEEITSLLIGKIPRSFSQLSHLG 404 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N----~l~~~ip~~i~~l~~~~ip~~l~~l~~L~ 404 (466)
.+.. .....++.|++++| ...|.+|. .++..+..+..+.
T Consensus 352 ~l~~-----------------------------~~p~~l~~l~l~~n~~~~~~~~~l~~--------~~~~~~~~l~~~~ 394 (727)
T 4b8c_D 352 RPEI-----------------------------PLPHERRFIEINTDGEPQREYDSLQQ--------STEHLATDLAKRT 394 (727)
T ss_dssp CCCC-----------------------------CCCCC------------------------------------------
T ss_pred cccC-----------------------------cCccccceeEeecccccccccCCccc--------cccchhhcccccc
Confidence 1110 01234567777777 22223332 3344566777788
Q ss_pred eeeccCCcCcccCC
Q 047429 405 VVNLSNNNFSGKIP 418 (466)
Q Consensus 405 ~L~Ls~N~l~~~ip 418 (466)
...+++|.+.+...
T Consensus 395 ~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 395 FTVLSYNTLCQHYA 408 (727)
T ss_dssp -------CCCGGGC
T ss_pred eeeeeccccccccC
Confidence 88889998865443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-19 Score=184.27 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=15.3
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
++|+.|+|++|.+. .+|. .++++++|+.|+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~ 378 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQS-ELESCKELQELE 378 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHC
T ss_pred ccceeccCChhhHH-hhHH-HHHHHHHHHHhc
Confidence 44555555555554 3444 555555555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=141.47 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=99.3
Q ss_pred CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
-+.++.++++++.+ |..+ .++|++|++++|.++...+ ..+.. +++|++|++++|.++...+..|..+ ++
T Consensus 21 ~~~v~c~~~~l~~i---p~~~---~~~L~~L~Ls~n~i~~~~~--~~~~~--l~~L~~L~L~~N~l~~i~~~~~~~l-~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASV---PAGI---PTNAQILYLHDNQITKLEP--GVFDS--LINLKELYLGSNQLGALPVGVFDSL-TQ 89 (229)
T ss_dssp TTEEECTTSCCSSC---CSCC---CTTCSEEECCSSCCCCCCT--TTTTT--CTTCCEEECCSSCCCCCCTTTTTTC-TT
T ss_pred CCEeEccCCCcCcc---CCCC---CCCCCEEEcCCCccCccCH--HHhhC--ccCCcEEECCCCCCCCcChhhcccC-CC
Confidence 45677777777776 3222 3677788888887777665 45666 7778888888887776655666777 77
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccC
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFG 197 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~ 197 (466)
|++|+|++|.+++..+. .|..+++|+.|+ +.|.++. +| ..+..+++|++|++++|.++.++ ..+.
T Consensus 90 L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~-----lp-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSA-VFDRLVHLKELFMCCNKLTE-----LP-------RGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCS-----CC-------TTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCEEECCCCcCCccChh-HhCcchhhCeEeccCCcccc-----cC-------cccccCCCCCEEECCCCcCCccCHHHHh
Confidence 88888888877754444 556666666666 6666553 33 44556666666666666666644 3455
Q ss_pred CCCCcCEEEeeCCcCCCcc
Q 047429 198 DMCCLKTLKIHDNILTAKL 216 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~ 216 (466)
.+++|++|++++|.+....
T Consensus 157 ~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECTTSCBCTTB
T ss_pred CCCCCCEEEeeCCCccCCc
Confidence 6666666666666665443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=140.86 Aligned_cols=149 Identities=22% Similarity=0.265 Sum_probs=79.1
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
+.+++++++++.+ |..+ .++|++|++++|.++.+++ ..+.. +++|++|++++|.+++..|..|..+ ++|
T Consensus 14 ~~v~c~~~~l~~i---P~~l---~~~l~~L~l~~n~i~~i~~--~~~~~--l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEI---PTNL---PETITEIRLEQNTIKVIPP--GAFSP--YKKLRRIDLSNNQISELAPDAFQGL-RSL 82 (220)
T ss_dssp TEEECTTSCCSSC---CSSC---CTTCCEEECCSSCCCEECT--TSSTT--CTTCCEEECCSSCCCEECTTTTTTC-SSC
T ss_pred CEEEcCCCCcCcC---CCcc---CcCCCEEECCCCcCCCcCH--hHhhC--CCCCCEEECCCCcCCCcCHHHhhCC-cCC
Confidence 4566666666665 2222 2466666776666665554 34555 6666666666666666666666666 666
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~ 198 (466)
++|+|++|.++...+. .|.++++|+.|+ +.|.+++. .+ ..|..+++|++|+|++|.++.++. .|..
T Consensus 83 ~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 83 NSLVLYGNKITELPKS-LFEGLFSLQLLLLNANKINCL----RV-------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT-------TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CEEECCCCcCCccCHh-HccCCCCCCEEECCCCCCCEe----CH-------HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 6666666666633222 344444444444 44444443 22 334444444444444444444322 3444
Q ss_pred CCCcCEEEeeCCcC
Q 047429 199 MCCLKTLKIHDNIL 212 (466)
Q Consensus 199 l~~L~~L~L~~n~l 212 (466)
+++|++|++++|.+
T Consensus 151 l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 151 LRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CCCCCEEEeCCCCc
Confidence 44444444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-18 Score=177.37 Aligned_cols=189 Identities=18% Similarity=0.190 Sum_probs=121.9
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCc-------------CCC-CCcccCCCCCcCE
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ-------------ITG-IPKSFGDMCCLKT 204 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~-~~~~l~~l~~L~~ 204 (466)
..+++|+.|+ +.|.++. +| ..++.+++|+.|++++|. ..+ .|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-----Lp-------~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-----LQ-------SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-----HH-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHh-----hH-------HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc
Confidence 3456677777 7776654 45 566777777777776653 222 3445566666666
Q ss_pred EE-eeCCcCCCccchhhhhc-cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccc
Q 047429 205 LK-IHDNILTAKLPELFLNF-SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNH 282 (466)
Q Consensus 205 L~-L~~n~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~ 282 (466)
|+ ++.|.+.......+... +....+..|+.|++++|.++ .+|. +..+++|+.|+|++|.|
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-----------~lp~-~~~l~~L~~L~Ls~N~l------ 475 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-----------VLCH-LEQLLLVTHLDLSHNRL------ 475 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-----------SCCC-GGGGTTCCEEECCSSCC------
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-----------CCcC-ccccccCcEeecCcccc------
Confidence 66 45544331111000000 11111134777888888777 5555 77777888888887554
Q ss_pred ccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhh
Q 047429 283 INGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI 362 (466)
Q Consensus 283 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
..+|..++.+++|++|+|++|.+++ +| .|+++++
T Consensus 476 --~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~------------------------------------------ 509 (567)
T 1dce_A 476 --RALPPALAALRCLEVLQASDNALEN-VD-GVANLPR------------------------------------------ 509 (567)
T ss_dssp --CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS------------------------------------------
T ss_pred --cccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCC------------------------------------------
Confidence 3667777778888888888888775 44 5555444
Q ss_pred ccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 363 ~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
|+.|+|++|++++.. .|..+..+++|+.|+|++|.+++.+|.
T Consensus 510 ----L~~L~Ls~N~l~~~~-----------~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 510 ----LQELLLCNNRLQQSA-----------AIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp ----CCEEECCSSCCCSSS-----------TTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ----CcEEECCCCCCCCCC-----------CcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 499999999999421 167789999999999999999966554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-16 Score=167.61 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=100.8
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+..|++|+|++|.+. .+|..+..+ ++|++|+|++|.++ .+|. .|+++++|+.|+ +.|.++. +|
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~~l-~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-----lp------- 286 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIFKY-DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLTS-----LP------- 286 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGGGC-CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCSS-----CC-------
T ss_pred CCCCcEEECCCCCCC-CCChhhcCC-CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCCc-----cC-------
Confidence 666666666666666 344444455 66677777776666 5565 666666677766 6666663 55
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..+++|++|+|++|.++.+|..|..+++|++|+|++|.+++.+|..+.... .....+++++|.++|.+|
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-----~~~~~l~l~~N~l~~~~p--- 358 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-----VTGLIFYLRDNRPEIPLP--- 358 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-----HHHHHHHHHHCCCCCCCC---
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-----hhhhHHhhccCcccCcCc---
Confidence 577888999999999999999999999999999999999999998888765430 113357888888875443
Q ss_pred ccccccCcccCCCCCCcEEeCCCCe-eeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQ-LWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~-l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
. .|+.|+++.|. +......+.+..+..+..+..+....+++|-+.
T Consensus 359 -------~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 -------H------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------C------C-----------------------------------------CCC
T ss_pred -------c------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 2 45556666541 101112333444445566667777788888764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-17 Score=155.42 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=146.2
Q ss_pred CcCCcEEeCCCccccccchHHHhhc-CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc---cccc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSY-HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR---SHSL 87 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~ 87 (466)
+++++.|+++++ +..... ..+.. +++|+.|||++|++..... ... . ++.++.+.+..|.+....-. ....
T Consensus 24 ~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~-~~~--~-~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSG-KAG--T-YPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEE-SSS--S-SGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeEEecC-ccc--c-ccccccccccccccCHHHhcccccccc
Confidence 566888998865 333333 45555 8889999999999872210 000 0 22233344444422211000 0011
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccc----ccccccCC
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYI----TGISKCSL 162 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l----~~~~~~~l 162 (466)
.+ +++|+++++.+ .++.+...+|.++ ++|+.+++++|.+....+. .|.++.++..+. ..... ..+ -
T Consensus 98 ~g--~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i----~ 168 (329)
T 3sb4_A 98 KG--KQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRW----E 168 (329)
T ss_dssp EE--CTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTT----T
T ss_pred cc--cCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccc----c
Confidence 12 45666666666 5655555566666 6666666666665533333 555555555554 22110 110 0
Q ss_pred CccccCccccccCCCcc--------------------------CEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCc
Q 047429 163 PITLVRPKYAFSNVTSL--------------------------MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAK 215 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L--------------------------~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~ 215 (466)
. .+|..+..| ..+.+.++-... .......+++|+.+++++|+++..
T Consensus 169 ~-------~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 169 H-------FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp T-------SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred c-------cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 0 122223333 333332221100 000011267788888888777766
Q ss_pred cchhhhhccccccccccceEecCCccccccCCCCcccccccC-cccCCCCCCc-EEeCCCCeeeeecccccccCCCCCCC
Q 047429 216 LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLV-ELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~-~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
....|... .+|+.+++.+| ++ .++ .+|.++++|+ .+++.+ .++...+.+|.+
T Consensus 242 ~~~aF~~~------~~L~~l~l~~n-i~-----------~I~~~aF~~~~~L~~~l~l~~--------~l~~I~~~aF~~ 295 (329)
T 3sb4_A 242 PDFTFAQK------KYLLKIKLPHN-LK-----------TIGQRVFSNCGRLAGTLELPA--------SVTAIEFGAFMG 295 (329)
T ss_dssp CTTTTTTC------TTCCEEECCTT-CC-----------EECTTTTTTCTTCCEEEEECT--------TCCEECTTTTTT
T ss_pred cHhhhhCC------CCCCEEECCcc-cc-----------eehHHHhhCChhccEEEEEcc--------cceEEchhhhhC
Confidence 66665554 56888888776 55 333 3577888888 888875 223344577888
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
|++|+.++++.|.++.+.+.+|.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88888888888888877777888888876553
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=129.62 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=57.0
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch-hhhhhhhhhhhcCCCCceeeeeeecc
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLSAMVQNGSSNVIVEYRIQLI 338 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~n~~~~~~~~~~ 338 (466)
+..+++|++|++++|. +++.+|..+..+++|++|++++|.+++..+ ..+..
T Consensus 67 ~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~--------------------- 118 (168)
T 2ell_A 67 LPKLPKLKKLELSENR-------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK--------------------- 118 (168)
T ss_dssp CCCCSSCCEEEEESCC-------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS---------------------
T ss_pred hccCCCCCEEECcCCc-------CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc---------------------
Confidence 4455566666666533 333345555556777777777777764321 33333
Q ss_pred CCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 339 DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
+++|++|++++|.+++ +|... ...+..+++|++|++++|.+. ++|
T Consensus 119 -------------------------l~~L~~L~l~~N~l~~-~~~~~--------~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 119 -------------------------LECLKSLDLFNCEVTN-LNDYR--------ESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp -------------------------CSCCCEEECCSSGGGT-STTHH--------HHHHTTCSSCCEETTEETTSC-BCC
T ss_pred -------------------------CCCCCEEEeeCCcCcc-hHHHH--------HHHHHhCccCcEecCCCCChh-hcc
Confidence 3344778888887772 22100 014677788888888888876 566
Q ss_pred CC
Q 047429 419 SS 420 (466)
Q Consensus 419 ~~ 420 (466)
++
T Consensus 164 ~~ 165 (168)
T 2ell_A 164 DS 165 (168)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=131.59 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=93.3
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccch-hhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
-+.+++++|.++.+|..+.. ++++|++++|.+++..+. .+..+ ++|++|++++|++++. .|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l------~~L~~L~Ls~N~l~~~----------~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRL------PHLVKLELKRNQLTGI----------EP 71 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGC------TTCCEEECCSSCCCCB----------CT
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccC------CCCCEEECCCCCCCCc----------CH
Confidence 37899999999888876644 899999999999877664 35444 6799999999998833 24
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..|..+++|++|+|++| ++++..+..+..+++|++|+|++|++++..|..|..+++|
T Consensus 72 ~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 72 NAFEGASHIQELQLGEN-------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp TTTTTCTTCCEEECCSC-------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred hHcCCcccCCEEECCCC-------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 56888999999999985 4556666778889999999999999988777777666555
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=128.48 Aligned_cols=130 Identities=21% Similarity=0.243 Sum_probs=107.4
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
+.++ +.+.++. +| ..+. .++++|++++|.+++++. .+..+++|++|++++|.+++..|..+..
T Consensus 11 ~~l~~s~~~l~~-----ip-------~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IP-------RDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSS-----CC-------SCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCc-----Cc-------cCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 5677 7777765 44 3332 389999999999999664 4899999999999999999888887776
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
+ ++|++|++++|++++.. |..|..+++|++|+|++| ++++..|..+..+++|++|+|
T Consensus 77 l------~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 77 A------SHIQELQLGENKIKEIS----------NKMFLGLHQLKTLNLYDN-------QISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp C------TTCCEEECCSCCCCEEC----------SSSSTTCTTCCEEECCSS-------CCCEECTTSSTTCTTCCEEEC
T ss_pred c------ccCCEEECCCCcCCccC----------HHHhcCCCCCCEEECCCC-------cCCeeCHHHhhcCCCCCEEEe
Confidence 6 68999999999998432 345888999999999995 556777889999999999999
Q ss_pred cCCCCCCCch
Q 047429 303 SHNNISGMVP 312 (466)
Q Consensus 303 s~N~l~~~~p 312 (466)
++|.+.+..+
T Consensus 134 ~~N~l~c~c~ 143 (192)
T 1w8a_A 134 ASNPFNCNCH 143 (192)
T ss_dssp TTCCBCCSGG
T ss_pred CCCCccCcCc
Confidence 9999997655
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=126.51 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=63.3
Q ss_pred CEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc
Q 047429 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259 (466)
Q Consensus 180 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~ 259 (466)
+.+++++|.++.+|..+. ++|++|++++|.++ .+|..+..+ ++|+.|++++|.+++.. +..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l------~~L~~L~Ls~N~i~~i~----------~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNY------KHLTLIDLSNNRISTLS----------NQS 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGC------TTCCEEECCSSCCCCCC----------TTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcc------cCCCEEECCCCcCCEeC----------HhH
Confidence 567777777777665443 46667777777665 333444333 45666666666665211 123
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
|..+++|++|+|++| .+++..+..|..+++|++|+|++|.+++..+..|..+++|
T Consensus 74 f~~l~~L~~L~Ls~N-------~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 74 FSNMTQLLTLILSYN-------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp TTTCTTCCEEECCSS-------CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCC-------ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 555666666666653 3333444455556666666666666654444444443333
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-15 Score=125.78 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=73.9
Q ss_pred CCCCCEEEcCCCCCC--CCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc
Q 047429 64 LPSLRELDLSSSAPP--KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN 141 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~ 141 (466)
.++|++|++++|.++ .++. .+.. +++|++|++++|.+++. ..+..+ ++|++|++++|.+.+..|. .+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~---~~~~--l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~-~~~- 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG---LTAE--FVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDM-LAE- 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS---CCGG--GGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCH-HHH-
T ss_pred cccCCEEECCCCCCChhhHHH---HHHh--CCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHH-HHh-
Confidence 456777777777766 3322 3444 66777777777776654 555666 6777777777776654444 333
Q ss_pred CCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC--cccCCCCCcCEEEeeCCcCCCccc--
Q 047429 142 MTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--KSFGDMCCLKTLKIHDNILTAKLP-- 217 (466)
Q Consensus 142 l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~l~~l~~L~~L~L~~n~l~~~~~-- 217 (466)
.+++|++|++++|.+++++ ..+..+++|++|++++|.+++..+
T Consensus 93 ---------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 93 ---------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp ---------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred ---------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 3445555555555555543 445555555555555555554433
Q ss_pred -hhhhhccccccccccceEecCCcccc
Q 047429 218 -ELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 218 -~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+ ++|+.|++++|.+.
T Consensus 140 ~~~~~~l------~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 140 ESVFKLL------PQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHTTC------SSCCEETTEETTSC
T ss_pred HHHHHhC------ccCcEecCCCCChh
Confidence 222222 34555555555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=142.10 Aligned_cols=248 Identities=15% Similarity=0.111 Sum_probs=156.6
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcC--------CCCCCEEEcCCCCCCCCCcc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITG--------LPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~ 83 (466)
+++|+.|||++|++..... .-..++.++.+.+..+.+ +...+.+ +++|+.++|.. .++.+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I------~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~- 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFV------PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED- 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEE------CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-
T ss_pred hccCeEEecCcceeEEecC--cccccccccccccccccc------CHHHhcccccccccccCCCcEEECCc-cccchhH-
Confidence 7889999999999882111 011122245555555533 2234454 77888888877 6666665
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcc----ccCCChhhhhcCCcccc-cc-cc------
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL----QGPTPDYAFRNMTSLAS-LT-SL------ 151 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l----~~~~~~~~~~~l~~L~~-L~-~~------ 151 (466)
.+|.. +++|++++++.|.+..+.+.+|... .++..+.+..+.. ...... .|.++..|+. +. ..
T Consensus 118 -~aF~~--~~~L~~l~l~~n~i~~i~~~aF~~~-~~l~~l~~~~~~~~~~~~~i~~~-~f~~~~~L~~~i~~~~~~~l~~ 192 (329)
T 3sb4_A 118 -AAFKG--CDNLKICQIRKKTAPNLLPEALADS-VTAIFIPLGSSDAYRFKNRWEHF-AFIEGEPLETTIQVGAMGKLED 192 (329)
T ss_dssp -TTTTT--CTTCCEEEBCCSSCCEECTTSSCTT-TCEEEECTTCTHHHHTSTTTTTS-CEEESCCCEEEEEECTTCCHHH
T ss_pred -HHhhc--CcccceEEcCCCCccccchhhhcCC-CceEEecCcchhhhhcccccccc-ccccccccceeEEecCCCcHHH
Confidence 56767 7888888888887776666677766 6666666555321 111111 3444444441 11 00
Q ss_pred ---------cccccccccC-CCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhh
Q 047429 152 ---------NYITGISKCS-LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELF 220 (466)
Q Consensus 152 ---------n~l~~~~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 220 (466)
..+....... +.. .........+++|+.+++++|.++.++. +|.++++|+.+++.+| ++...+..|
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 0000000000 000 0000001237899999999999999765 7999999999999998 776666666
Q ss_pred hhccccccccccc-eEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 221 LNFSAGCAKKSLQ-SFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 221 ~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
... .+|+ .+++.+ .++ .++ .+|.+|++|+.+++++|. +....+.+|.++++|+
T Consensus 270 ~~~------~~L~~~l~l~~-~l~-----------~I~~~aF~~c~~L~~l~l~~n~-------i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 270 SNC------GRLAGTLELPA-SVT-----------AIEFGAFMGCDNLRYVLATGDK-------ITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTC------TTCCEEEEECT-TCC-----------EECTTTTTTCTTEEEEEECSSC-------CCEECTTTTCTTCCCC
T ss_pred hCC------hhccEEEEEcc-cce-----------EEchhhhhCCccCCEEEeCCCc-------cCccchhhhcCCcchh
Confidence 655 6799 999998 666 443 569999999999998854 4555567899999999
Q ss_pred EEEc
Q 047429 299 VLDF 302 (466)
Q Consensus 299 ~L~L 302 (466)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 9864
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=119.04 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=96.3
Q ss_pred cCCcCCcEEeCCCcccc-ccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 10 ISLEDLQSINIGLNAIR-VRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
...+++++|++++|.++ +..+ ..+..+++|++|++++|.++.. ..+.. +++|++|++++|.+++..+ ..+.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~-l~~L~~L~Ls~n~i~~~~~--~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI----ANLPK-LNKLKKLELSDNRVSGGLE--VLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC----TTCCC-CTTCCEEECCSSCCCSCTH--HHHH
T ss_pred CCCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc----hhhhc-CCCCCEEECCCCcccchHH--HHhh
Confidence 34578889999999887 4555 6678888899999999988775 13334 8889999999998887544 4555
Q ss_pred cCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCC---hhhhhcCCcccccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTP---DYAFRNMTSLASLT 149 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~ 149 (466)
. +++|++|++++|.+++. .+..+..+ ++|++|++++|.+++..+ . .+..+++|+.|+
T Consensus 86 ~--l~~L~~L~ls~N~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~L~~L~ 146 (149)
T 2je0_A 86 K--CPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYREN-VFKLLPQLTYLD 146 (149)
T ss_dssp H--CTTCCEEECTTSCCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHH-HHHHCTTCCEET
T ss_pred h--CCCCCEEECCCCcCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHH-HHHHCCCccccc
Confidence 6 78899999999988864 34677787 889999999988886554 3 566666666665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=122.03 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCccCEEecCCCcCC--CCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccc
Q 047429 176 VTSLMDLDLSKNQIT--GIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 253 (466)
.++|++|++++|.++ .+|..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l------~~L~~L~Ls~n~i~~~-------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL------NKLKKLELSDNRVSGG-------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC------TTCCEEECCSSCCCSC--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC------CCCCEEECCCCcccch--------
Confidence 467888888888887 4777778888888888888888765 333333 5788888888888732
Q ss_pred cccCcccCCCCCCcEEeCCCCeeeeeccccccc-CCCCCCCCCCccEEEccCCCCCCCch---hhhhhhhhhhhcCC
Q 047429 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGS-ATPKLCSSPMLQVLDFSHNNISGMVP---TCLNNLSAMVQNGS 326 (466)
Q Consensus 254 ~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~~ 326 (466)
+|..+..+++|++|++++|.+ ++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|+.
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred --HHHHhhhCCCCCEEECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 455566688888888888654 331 23667888888888888888887665 57888888877764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=118.79 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=71.6
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC-
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP- 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp- 257 (466)
.+.++++++.++.+|..+. ++|++|++++|++++..+..+..+ ++|++|++++|.++ .+|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~~~~ 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKL------TQLTKLSLSQNQIQ-----------SLPD 69 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCSEEECCSSCCC-----------CCCT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCc------ccccEEECCCCcce-----------EeCh
Confidence 4566777777766665432 567777777777765555544443 46777777777776 333
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..+..+++|++|++++|. +++..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 70 ~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENK-------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hHccCCCccCEEECCCCC-------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 235667777777777743 344444456677777777777777775555444444444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=118.52 Aligned_cols=133 Identities=21% Similarity=0.338 Sum_probs=103.0
Q ss_pred CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeee
Q 047429 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLR 279 (466)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~ 279 (466)
+.+.+++++++++...... +++|++|++++|+++ .+| ..+..+++|++|++++|.+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---------~~~l~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l--- 64 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---------PSSATRLELESNKLQ-----------SLPHGVFDKLTQLTKLSLSQNQI--- 64 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---------CTTCSEEECCSSCCC-----------CCCTTTTTTCTTCSEEECCSSCC---
T ss_pred CCCEEEecCCCCccCCCCC---------CCCCcEEEeCCCccc-----------EeCHHHhcCcccccEEECCCCcc---
Confidence 4678999999987544321 257999999999998 333 3478899999999999544
Q ss_pred cccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccch
Q 047429 280 FNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359 (466)
Q Consensus 280 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (466)
++..+..+..+++|++|++++|.+++..+..|.++++|
T Consensus 65 ----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------------------------------- 102 (177)
T 2o6r_A 65 ----QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL-------------------------------------- 102 (177)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred ----eEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc--------------------------------------
Confidence 44555667899999999999999998777666666555
Q ss_pred hhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 360 YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 360 ~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|++++|+++ .+| +..+..+++|++|++++|.+.+..|
T Consensus 103 --------~~L~l~~N~l~-~~~-----------~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 103 --------KELALDTNQLK-SVP-----------DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --------CEEECCSSCCS-CCC-----------TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------CEEECcCCcce-EeC-----------HHHhcCCcccCEEEecCCCeeccCc
Confidence 89999999998 332 2236789999999999999986443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=118.62 Aligned_cols=128 Identities=22% Similarity=0.251 Sum_probs=102.9
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
+.++ +.+.++. +| ..+ .++|++|++++|.++.+|..|..+++|++|++++|.+++..+..|..+
T Consensus 13 ~~l~~~~~~l~~-----ip-------~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l- 77 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LP-------KGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM- 77 (193)
T ss_dssp TEEECTTSCCSS-----CC-------SCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC-
T ss_pred CEEEcCCCCCCc-----CC-------CCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC-
Confidence 4566 6777665 44 222 258999999999999999899999999999999999998888777666
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 304 (466)
++|++|++++|++++.. |..|..+++|++|+|++|.| ++..+..|..+++|+.|++++
T Consensus 78 -----~~L~~L~Ls~N~l~~i~----------~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 78 -----TQLLTLILSYNRLRCIP----------PRTFDGLKSLRLLSLHGNDI-------SVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp -----TTCCEEECCSSCCCBCC----------TTTTTTCTTCCEEECCSSCC-------CBCCTTTTTTCTTCCEEECCS
T ss_pred -----CCCCEEECCCCccCEeC----------HHHhCCCCCCCEEECCCCCC-------CeeChhhhhcCccccEEEeCC
Confidence 68999999999998332 24688999999999999655 444455688999999999999
Q ss_pred CCCCCC
Q 047429 305 NNISGM 310 (466)
Q Consensus 305 N~l~~~ 310 (466)
|.+...
T Consensus 136 N~~~C~ 141 (193)
T 2wfh_A 136 NPLYCD 141 (193)
T ss_dssp SCEECS
T ss_pred CCeecC
Confidence 998753
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-14 Score=121.01 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=81.6
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
.++++|++|++++|.++.. +. +... .++|+.|++++|.++ .+ ..+..+++|++|++++|.+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~-----~~~L~~L~Ls~N~l~-----------~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGAT-----LDQFDAIDFSDNEIR-----------KL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGG-----TTCCSEEECCSSCCC-----------EE-CCCCCCSSCCEEECCSSCC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhc-----CCCCCEEECCCCCCC-----------cc-cccccCCCCCEEECCCCcc
Confidence 3445555555555555532 22 1111 125666666666666 22 3466777888888887544
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchh--hhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeee
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT--CLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWK 354 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (466)
++..+..+..+++|++|++++|.++ .+|. .+..+
T Consensus 77 -------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l------------------------------------ 112 (176)
T 1a9n_A 77 -------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASL------------------------------------ 112 (176)
T ss_dssp -------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGC------------------------------------
T ss_pred -------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcC------------------------------------
Confidence 3332333477888888888888885 3443 34443
Q ss_pred cccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 355 PIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 355 ~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|+.|++++|.++ .+|..-. ..+..+++|+.||+++|.+.
T Consensus 113 ----------~~L~~L~l~~N~i~-~~~~~~~--------~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 113 ----------KSLTYLCILRNPVT-NKKHYRL--------YVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ----------TTCCEEECCSSGGG-GSTTHHH--------HHHHHCTTCSEETTEECCHH
T ss_pred ----------CCCCEEEecCCCCC-CcHhHHH--------HHHHHCCccceeCCCcCCHH
Confidence 34488888888887 3332200 02677888888888888775
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-14 Score=120.90 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=61.0
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
+|++|++++|.++++ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~i~-----------~~~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL------PDLTELILTNNSLV-----------ELG 104 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC------TTCCEEECCSCCCC-----------CGG
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC------CCCCEEECCCCcCC-----------cch
Confidence 566666666666655 455666666666666666665444433433 45666666666665 344
Q ss_pred c--ccCCCCCCcEEeCCCCeeeeecccccccCCCC----CCCCCCccEEEccCCCCC
Q 047429 258 K--QFCRPSSLVELDLESNQLWLRFNHINGSATPK----LCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 258 ~--~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~----~~~l~~L~~L~Ls~N~l~ 308 (466)
. .+..+++|+.|++++|.+ ..+|.. +..+++|++||++.|.+.
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i--------~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPV--------TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGG--------GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhHhhhcCCCCCEEEecCCCC--------CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 455666666666666444 233442 556666666666666554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-15 Score=141.85 Aligned_cols=91 Identities=25% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCcccccc-ccCCCCCccEEEcCCCCCCchhhhhh
Q 047429 37 HNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRSHSL-VNSSSSSLTHLHLSLCGLSNSAYHCL 113 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l 113 (466)
.+.|++|+|++|.++... .+...+....++|++|+|++|.++.... ..+ .. +.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~--L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL--RTLLPV--FLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH--HHTHHH--HHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH--HHHHHH--HHhccHhhcCCCCCCHHHHHHH
Confidence 466888888888876542 1111222223678888888887764332 122 22 5678888888888876554444
Q ss_pred h-----cccCCCcEEEccCCcccc
Q 047429 114 S-----HISKSLVYLDLSNNQLQG 132 (466)
Q Consensus 114 ~-----~l~~~L~~L~Ls~n~l~~ 132 (466)
. .. ++|++|+|++|.++.
T Consensus 147 ~~~L~~~~-~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 147 RDLLLHDQ-CQITTLRLSNNPLTA 169 (372)
T ss_dssp HHHHHSTT-CCCCEEECCSSCCHH
T ss_pred HHHHHhcC-CccceeeCCCCCCCh
Confidence 3 23 678888888887764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=126.02 Aligned_cols=253 Identities=11% Similarity=0.144 Sum_probs=181.9
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+..+..++.+.+.. .++.+.. ..|.++ +|+.+.+..+ ++.+ ....+.+ .+|+.+.+.. .++.+.. .+|.
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~-~aF~~~-~L~~i~l~~~-i~~I---~~~aF~~-~~L~~i~lp~-~l~~I~~--~aF~ 177 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPK-DAFRNS-QIAKVVLNEG-LKSI---GDMAFFN-STVQEIVFPS-TLEQLKE--DIFY 177 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECT-TTTTTC-CCSEEECCTT-CCEE---CTTTTTT-CCCCEEECCT-TCCEECS--STTT
T ss_pred EEecCCccEEEECC-ccCEehH-hhcccC-CccEEEeCCC-ccEE---CHHhcCC-CCceEEEeCC-CccEehH--HHhh
Confidence 34557778888864 4554555 677775 7999999876 6665 3344443 4799999986 5666665 5777
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV 167 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~ 167 (466)
. +.+|+.+++..|.++.+...+|. . .+|+.+.+..+ +...... +|.++.+|+.+. ..+ ++.++.
T Consensus 178 ~--c~~L~~l~l~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~-aF~~~~~L~~l~l~~~-l~~I~~-------- 242 (401)
T 4fdw_A 178 Y--CYNLKKADLSKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQ-AFLKTSQLKTIEIPEN-VSTIGQ-------- 242 (401)
T ss_dssp T--CTTCCEEECTTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTT-TTTTCTTCCCEECCTT-CCEECT--------
T ss_pred C--cccCCeeecCCCcceEechhhEe-e-cccCEEEeCCc-hheehhh-HhhCCCCCCEEecCCC-ccCccc--------
Confidence 7 89999999999999877666776 5 78999999855 6644444 899999999998 433 443311
Q ss_pred CccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCC-----CccchhhhhccccccccccceEecCCcc
Q 047429 168 RPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILT-----AKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
.+|.+ .+|+.+.+. +.++.+ ..+|.++++|+.+++.+|.+. ......|... ++|+.+.+.. .
T Consensus 243 ---~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c------~~L~~l~l~~-~ 310 (401)
T 4fdw_A 243 ---EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC------PKLARFEIPE-S 310 (401)
T ss_dssp ---TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC------TTCCEECCCT-T
T ss_pred ---ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC------ccCCeEEeCC-c
Confidence 45666 789999994 556665 458899999999999988765 2333444333 5799999984 4
Q ss_pred ccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 319 (466)
++ .++ .+|.+|++|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..|.+++
T Consensus 311 i~-----------~I~~~aF~~c~~L~~l~lp~~--------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 311 IR-----------ILGQGLLGGNRKVTQLTIPAN--------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CC-----------EECTTTTTTCCSCCEEEECTT--------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred eE-----------EEhhhhhcCCCCccEEEECcc--------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 65 443 45888999999999653 344556788888 999999999988766667777664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=111.45 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=86.7
Q ss_pred ccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
+.+.+++++|.++ .+|..+. ++|++|+|++| .+++..|..|..+++|++|+|++|++++.
T Consensus 10 ~~~~l~~s~n~l~-----------~ip~~~~--~~l~~L~L~~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 10 SGTTVDCSGKSLA-----------SVPTGIP--TTTQVLYLYDN-------QITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp ETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEEEeCCCCcC-----------ccCccCC--CCCcEEEcCCC-------cCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 4678999999998 6676553 78999999985 55666678899999999999999999987
Q ss_pred chhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhcc
Q 047429 311 VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLI 390 (466)
Q Consensus 311 ~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~ 390 (466)
.+..|.++++| ++|+|++|++++ +|
T Consensus 70 ~~~~f~~l~~L----------------------------------------------~~L~L~~N~l~~-~~-------- 94 (170)
T 3g39_A 70 PAGVFDKLTQL----------------------------------------------TQLSLNDNQLKS-IP-------- 94 (170)
T ss_dssp CTTTTTTCTTC----------------------------------------------CEEECCSSCCCC-CC--------
T ss_pred ChhhccCCCCC----------------------------------------------CEEECCCCccCE-eC--------
Confidence 77777776666 899999999982 22
Q ss_pred CCCcccccCCCCCCeeeccCCcCcc
Q 047429 391 GKIPRSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 391 ~~ip~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
|..|..+++|++|+|++|.+++
T Consensus 95 ---~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 95 ---RGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ---TTTTTTCTTCCEEECCSSCBCT
T ss_pred ---HHHhcCCCCCCEEEeCCCCCCC
Confidence 3358889999999999999874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=110.74 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=84.1
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
-+.+++++|.++ .+|..+. ++|++|+|++| ++.+..|..|..+++|++|+|++|++++..
T Consensus 14 ~~~l~~~~n~l~-----------~iP~~~~--~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 14 QTLVNCQNIRLA-----------SVPAGIP--TDKQRLWLNNN-------QITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SSEEECCSSCCS-----------SCCSCCC--TTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcEEEeCCCCCC-----------ccCCCcC--CCCcEEEeCCC-------CccccCHHHhcCCcCCCEEECCCCCCCccC
Confidence 467899999887 6676554 78999999985 456666788999999999999999999776
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
+..|.++++| ++|+|++|+++
T Consensus 74 ~~~~~~l~~L----------------------------------------------~~L~L~~N~l~------------- 94 (174)
T 2r9u_A 74 TGVFDKLTQL----------------------------------------------TQLDLNDNHLK------------- 94 (174)
T ss_dssp TTTTTTCTTC----------------------------------------------CEEECCSSCCC-------------
T ss_pred hhHhCCcchh----------------------------------------------hEEECCCCccc-------------
Confidence 6666666555 88999999998
Q ss_pred CCcc-cccCCCCCCeeeccCCcCc
Q 047429 392 KIPR-SFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 392 ~ip~-~l~~l~~L~~L~Ls~N~l~ 414 (466)
.+|. .|..+++|++|+|++|.+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred eeCHHHhccccCCCEEEeCCCCcc
Confidence 3443 4888999999999999987
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=123.71 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=177.6
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+|.++++|+.+++..+ ++.+.. ..|.++.+|+.+++..+ ++.+ ....+.++++|+.+.+..+ +..... .+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~-~aF~~c~~L~~i~lp~~-l~~I---~~~aF~~c~~L~~i~~p~~-l~~i~~--~a 135 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGE-FAFENCSKLEIINIPDS-VKMI---GRCTFSGCYALKSILLPLM-LKSIGV--EA 135 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE---CTTTTTTCTTCCCCCCCTT-CCEECT--TT
T ss_pred HHhhCCCCceEEEeCCC-ccCcch-hHhhCCCCCcEEEeCCC-ceEc---cchhhcccccchhhcccCc-eeeecc--ee
Confidence 46677788888888643 554544 66778888888888654 4444 2234444777777666544 232322 33
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
|.. +..+ ..... ..+......+|..+ ++|+.+.+.++... .... .|.++.+|+.+. ..+ ++.. -.
T Consensus 136 F~~--~~~~-~~~~~-~~~~~i~~~aF~~c-~~L~~i~l~~~~~~-I~~~-~F~~c~~L~~i~l~~~-~~~I----~~-- 201 (394)
T 4fs7_A 136 FKG--CDFK-EITIP-EGVTVIGDEAFATC-ESLEYVSLPDSMET-LHNG-LFSGCGKLKSIKLPRN-LKII----RD-- 201 (394)
T ss_dssp TTT--CCCS-EEECC-TTCCEECTTTTTTC-TTCCEEECCTTCCE-ECTT-TTTTCTTCCBCCCCTT-CCEE----CT--
T ss_pred eec--cccc-ccccC-ccccccchhhhccc-CCCcEEecCCccce-eccc-cccCCCCceEEEcCCC-ceEe----Cc--
Confidence 443 3222 22222 12223344567777 88999988765432 3333 788888888887 333 3322 11
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+|.++..|+.+.+..+... +.+......+|+.+.+... ++......|... ..++.+.+..+...
T Consensus 202 -----~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~------~~l~~~~~~~~~~~-- 266 (394)
T 4fs7_A 202 -----YCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGC------TDLESISIQNNKLR-- 266 (394)
T ss_dssp -----TTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTC------SSCCEEEECCTTCE--
T ss_pred -----hhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceeccccccccc------ccceeEEcCCCcce--
Confidence 46777788887777655322 3333445567777777543 222222333222 45777777665443
Q ss_pred CCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 246 LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 246 ~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
.-...|..+..++.+....+.+ ....+..+.+|+.+.+..+ ++.+...+|.++++|+.+.
T Consensus 267 ---------i~~~~F~~~~~l~~~~~~~~~i----------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 267 ---------IGGSLFYNCSGLKKVIYGSVIV----------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp ---------ECSCTTTTCTTCCEEEECSSEE----------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ---------eeccccccccccceeccCceee----------ccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 2223466677777776655322 2345666777777777644 5445556777777776665
Q ss_pred CCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCe
Q 047429 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGV 405 (466)
Q Consensus 326 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~ 405 (466)
+.+.+. .+....+.++.+|+.+++..| ++ .|+ ..+|.+|++|+.
T Consensus 327 lp~~v~-----------------------~I~~~aF~~c~~L~~i~lp~~-l~-~I~-----------~~aF~~C~~L~~ 370 (394)
T 4fs7_A 327 LPYLVE-----------------------EIGKRSFRGCTSLSNINFPLS-LR-KIG-----------ANAFQGCINLKK 370 (394)
T ss_dssp CCTTCC-----------------------EECTTTTTTCTTCCEECCCTT-CC-EEC-----------TTTBTTCTTCCE
T ss_pred eCCccc-----------------------EEhHHhccCCCCCCEEEECcc-cc-Eeh-----------HHHhhCCCCCCE
Confidence 433322 222334455677788877766 44 222 336788888888
Q ss_pred eeccCC
Q 047429 406 VNLSNN 411 (466)
Q Consensus 406 L~Ls~N 411 (466)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 888654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=121.45 Aligned_cols=247 Identities=13% Similarity=0.170 Sum_probs=183.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..+|.++ +|+.+++..+ ++.+.. ..|.++ +|+.+.+.. .+..+ ....+.++++|+.++++.|.++.++. .
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~-~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~~L~~l~l~~n~l~~I~~--~ 198 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGD-MAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCYNLKKADLSKTKITKLPA--S 198 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECT-TTTTTC-CCCEEECCT-TCCEE---CSSTTTTCTTCCEEECTTSCCSEECT--T
T ss_pred HhhcccC-CccEEEeCCC-ccEECH-HhcCCC-CceEEEeCC-CccEe---hHHHhhCcccCCeeecCCCcceEech--h
Confidence 4566665 7999999876 665655 678875 699999986 56665 33445559999999999999988776 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCcc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPIT 165 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~ 165 (466)
.|. +.+|+.+.+..+ ++.+...+|.++ ++|+.+++..+ ++..... +|.+ .+|+.+.-.+.++.+ -.
T Consensus 199 aF~---~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~-aF~~-~~L~~i~lp~~i~~I----~~-- 264 (401)
T 4fdw_A 199 TFV---YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQE-AFRE-SGITTVKLPNGVTNI----AS-- 264 (401)
T ss_dssp TTT---TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTT-TTTT-CCCSEEEEETTCCEE----CT--
T ss_pred hEe---ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccc-cccc-CCccEEEeCCCccEE----Ch--
Confidence 454 579999999854 777777889998 99999999975 5534444 7777 678888722333333 11
Q ss_pred ccCccccccCCCccCEEecCCCcCC-----CC-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQIT-----GI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
.+|.++++|+.+++.+|.+. .+ +.+|.++++|+.+++.. .++......|... .+|+.+.+..
T Consensus 265 -----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c------~~L~~l~lp~ 332 (401)
T 4fdw_A 265 -----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN------RKVTQLTIPA 332 (401)
T ss_dssp -----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC------CSCCEEEECT
T ss_pred -----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC------CCccEEEECc
Confidence 68999999999999998776 34 35899999999999994 5776666666554 5799999966
Q ss_pred ccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-CccEEEccCCCCC
Q 047429 240 NMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-MLQVLDFSHNNIS 308 (466)
Q Consensus 240 n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~ 308 (466)
+ ++ .++ .+|.++ +|+.+++.+|.+ .......|..++ .++.|.+..+.+.
T Consensus 333 ~-l~-----------~I~~~aF~~~-~L~~l~l~~n~~-------~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VT-----------QINFSAFNNT-GIKEVKVEGTTP-------PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CC-----------EECTTSSSSS-CCCEEEECCSSC-------CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-cc-----------EEcHHhCCCC-CCCEEEEcCCCC-------cccccccccCCCCCccEEEeCHHHHH
Confidence 5 55 333 468889 999999999644 334456677774 7889988876643
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-15 Score=130.55 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=79.8
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..+++|++|++++|.++++| .+..+++|++|++++|.++ .+|..+..+ ++|+.|++++|+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~------~~L~~L~L~~N~l~------- 106 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA------DTLEELWISYNQIA------- 106 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH------HHCSEEEEEEEECC-------
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC------CcCCEEECcCCcCC-------
Confidence 35566677777777777777766 6666777777777777776 344433333 45777777777776
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCC--CCCCCCCCccEEEccCCCCCCCchh----------hhhhh
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT--PKLCSSPMLQVLDFSHNNISGMVPT----------CLNNL 318 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l 318 (466)
.+| .+..+++|++|++++|++ + .++ ..+..+++|++|++++|.+++..|. .+..+
T Consensus 107 ----~l~-~~~~l~~L~~L~l~~N~i-------~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 107 ----SLS-GIEKLVNLRVLYMSNNKI-------T-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp ----CHH-HHHHHHHSSEEEESEEEC-------C-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred ----cCC-ccccCCCCCEEECCCCcC-------C-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 333 355666777777777554 2 222 3466677777777777777655443 26666
Q ss_pred hhhhhcC
Q 047429 319 SAMVQNG 325 (466)
Q Consensus 319 ~~L~~l~ 325 (466)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 6666655
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-14 Score=125.78 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=61.8
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|++++|.+++ +| .+..+ ++|++|++++|.+. .+|. .+..+++|+.|+ +.|.+++.
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N~l~~l------------- 108 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL------------- 108 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEEECCCH-------------
T ss_pred CCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCCcCCcC-------------
Confidence 4555555555555543 22 44444 55555555555554 3343 444445555555 55554442
Q ss_pred ccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCCCccc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILTAKLP 217 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 217 (466)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+++..|
T Consensus 109 ~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 235556677777777777776443 56777777777777777765543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-14 Score=135.46 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=48.0
Q ss_pred CCCCCEEEcCCCCCCCCCcccccccc---CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVN---SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~ 133 (466)
++.|++|++++|.++.... ..+.. ...++|++|+|++|.++......+....++|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 4689999999998876443 22222 01368999999999998665555543227899999999988744
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=104.39 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=91.7
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
..+.+++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|+|++|+++ .+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l------~~L~~L~Ls~N~l~-----------~l~ 70 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRL------TQLTRLDLDNNQLT-----------VLP 70 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCSEEECCSSCCC-----------CCC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCc------ccCCEEECCCCCcC-----------ccC
Confidence 46789999999999988664 789999999999998888877766 68999999999998 444
Q ss_pred c-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 258 K-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 258 ~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
. .|..+++|++|+|++|+| ++..+..|..+++|++|+|++|.+....+
T Consensus 71 ~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 71 AGVFDKLTQLTQLSLNDNQL-------KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred hhhccCCCCCCEEECCCCcc-------CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 3 478999999999999554 55555679999999999999999986643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=104.03 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=89.9
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~ 258 (466)
-+.+++++|.++.+|..+. ++|++|++++|++++..|..+..+ ++|+.|+|++|+++ .+|.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~-----------~i~~ 74 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL------VNLQQLYFNSNKLT-----------AIPT 74 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------CCCT
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC------cCCCEEECCCCCCC-----------ccCh
Confidence 4789999999999988664 799999999999998888877766 68999999999998 5554
Q ss_pred c-cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 259 Q-FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 259 ~-~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
. |..+++|++|+|++|+| ++..+..+..+++|++|+|++|.+....
T Consensus 75 ~~~~~l~~L~~L~L~~N~l-------~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 75 GVFDKLTQLTQLDLNDNHL-------KSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hHhCCcchhhEEECCCCcc-------ceeCHHHhccccCCCEEEeCCCCccccc
Confidence 3 68899999999999655 4444455899999999999999998543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-11 Score=115.68 Aligned_cols=299 Identities=15% Similarity=0.179 Sum_probs=197.3
Q ss_pred ccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCC
Q 047429 25 IRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCG 104 (466)
Q Consensus 25 i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 104 (466)
++.+.. .+|.++.+|+.+.+..+ ++.+ ....+.++++|+.+++..+ ++.+.. .++.. +.+|+.+.+..+
T Consensus 59 VtsIg~-~AF~~c~~L~~i~lp~~-i~~I---~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~--c~~L~~i~~p~~- 127 (394)
T 4fs7_A 59 VVSIGY-AAFQGCRKVTEIKIPST-VREI---GEFAFENCSKLEIINIPDS-VKMIGR--CTFSG--CYALKSILLPLM- 127 (394)
T ss_dssp EEEECT-TTTTTCTTEEEEECCTT-CCEE---CTTTTTTCTTCCEECCCTT-CCEECT--TTTTT--CTTCCCCCCCTT-
T ss_pred EeEhHH-HHhhCCCCceEEEeCCC-ccCc---chhHhhCCCCCcEEEeCCC-ceEccc--hhhcc--cccchhhcccCc-
Confidence 444554 77899999999999754 6665 3345555999999999765 555554 56777 888888777654
Q ss_pred CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEe
Q 047429 105 LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLD 183 (466)
Q Consensus 105 l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~ 183 (466)
+......+|... ..++....... ...... +|.++.+|+.+. ..+ +... -. .+|..+.+|+.++
T Consensus 128 l~~i~~~aF~~~-~~~~~~~~~~~--~~i~~~-aF~~c~~L~~i~l~~~-~~~I----~~-------~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 128 LKSIGVEAFKGC-DFKEITIPEGV--TVIGDE-AFATCESLEYVSLPDS-METL----HN-------GLFSGCGKLKSIK 191 (394)
T ss_dssp CCEECTTTTTTC-CCSEEECCTTC--CEECTT-TTTTCTTCCEEECCTT-CCEE----CT-------TTTTTCTTCCBCC
T ss_pred eeeecceeeecc-cccccccCccc--cccchh-hhcccCCCcEEecCCc-ccee----cc-------ccccCCCCceEEE
Confidence 444555667665 44333333322 223333 889999999888 332 2222 11 5788999999999
Q ss_pred cCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc-CcccC
Q 047429 184 LSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF-PKQFC 261 (466)
Q Consensus 184 Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l-p~~~~ 261 (466)
+..+ ++.++ .+|.++..|+.+.+..+... +...+... .+|+.+.+.... + .+ ...+.
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~------~~l~~i~ip~~~-~-----------~i~~~~f~ 250 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK------TGVKNIIIPDSF-T-----------ELGKSVFY 250 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT------CCCCEEEECTTC-C-----------EECSSTTT
T ss_pred cCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc------CCCceEEECCCc-e-----------eccccccc
Confidence 9876 55543 47888999998888766432 12211111 358888776442 2 22 24578
Q ss_pred CCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCC
Q 047429 262 RPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDP 341 (466)
Q Consensus 262 ~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~ 341 (466)
.+..++.+.+..+.. ......|..+..++.+....+.+. ..+|..+.+|+.+.+.+.+
T Consensus 251 ~~~~l~~~~~~~~~~--------~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~i----------- 308 (394)
T 4fs7_A 251 GCTDLESISIQNNKL--------RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDSV----------- 308 (394)
T ss_dssp TCSSCCEEEECCTTC--------EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTTC-----------
T ss_pred ccccceeEEcCCCcc--------eeeccccccccccceeccCceeec---ccccccccccccccccccc-----------
Confidence 899999999987533 345567888999999988766533 3567788888665533322
Q ss_pred CcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 342 EFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..+....+..+.+|+.++|.++ ++ .|+ ..+|.+|++|+.+++..| ++ .|++.
T Consensus 309 ------------~~I~~~aF~~c~~L~~i~lp~~-v~-~I~-----------~~aF~~c~~L~~i~lp~~-l~-~I~~~ 360 (394)
T 4fs7_A 309 ------------KFIGEEAFESCTSLVSIDLPYL-VE-EIG-----------KRSFRGCTSLSNINFPLS-LR-KIGAN 360 (394)
T ss_dssp ------------CEECTTTTTTCTTCCEECCCTT-CC-EEC-----------TTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred ------------ceechhhhcCCCCCCEEEeCCc-cc-EEh-----------HHhccCCCCCCEEEECcc-cc-EehHH
Confidence 2233445567889999999765 55 222 447999999999999887 65 66654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=106.06 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeecc
Q 047429 259 QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLI 338 (466)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~ 338 (466)
+|..++.|+.+.+..+.. ......|.+++.|+.+.+. +.++.+...+|.++.+|+.+.+.+.+.
T Consensus 260 aF~~c~~L~~i~lp~~~~--------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~------- 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGIT------- 323 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCC-------
T ss_pred eeeecccccEEecccccc--------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCccc-------
Confidence 455666666666654221 2333455566666666664 334444445666666665554332221
Q ss_pred CCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcC
Q 047429 339 DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNF 413 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l 413 (466)
.+....+.++.+|+.+.|..+ ++ .|+ ..+|.+|++|+.+++.+|..
T Consensus 324 ----------------~I~~~aF~~C~~L~~i~ip~s-v~-~I~-----------~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 324 ----------------QILDDAFAGCEQLERIAIPSS-VT-KIP-----------ESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ----------------EECTTTTTTCTTCCEEEECTT-CC-BCC-----------GGGGTTCTTCCEEEESSCHH
T ss_pred ----------------EehHhHhhCCCCCCEEEECcc-cC-EEh-----------HhHhhCCCCCCEEEECCcee
Confidence 122233344556666666543 33 222 23566666666666666543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=109.94 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=43.5
Q ss_pred eEecCCc-cccccCCCCcccccccCcccCCCCCCcEEeCCC-CeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 234 SFMLQNN-MLSGSLPGVTELDGTFPKQFCRPSSLVELDLES-NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 234 ~L~L~~n-~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~-n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
.++++++ .++ .+|. +..+++|+.|+|++ |.| ++..+..|..+++|++|+|++|.|++..
T Consensus 12 ~v~~~~~n~l~-----------~ip~-l~~~~~L~~L~l~~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 12 GLRCTRDGALD-----------SLHH-LPGAENLTELYIENQQHL-------QHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CEECCSSCCCT-----------TTTT-SCSCSCCSEEECCSCSSC-------CEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred EEEcCCCCCCC-----------ccCC-CCCCCCeeEEEccCCCCC-------CCcChhHhccccCCCEEECCCCccceeC
Confidence 4566665 666 5666 66667777777764 433 3444456677777777777777777666
Q ss_pred hhhhhhhhhh
Q 047429 312 PTCLNNLSAM 321 (466)
Q Consensus 312 p~~~~~l~~L 321 (466)
|..|.++++|
T Consensus 73 ~~~~~~l~~L 82 (347)
T 2ifg_A 73 PDAFHFTPRL 82 (347)
T ss_dssp TTGGGSCSCC
T ss_pred HHHhcCCcCC
Confidence 6666655555
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=99.20 Aligned_cols=314 Identities=14% Similarity=0.149 Sum_probs=157.9
Q ss_pred cccCCc-CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC---CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 8 FHISLE-DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD---LREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 8 ~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
+|.+++ .|+.+.+..+ ++.+.. .+|.++.+|+.+.+..+. ++.+ ....+.++.+|+.+.+..+ ++.+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~-~AF~~C~~L~~i~~~~n~p~~l~~I---g~~aF~~c~~L~~i~~~~~-~~~I~~- 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGS-NAFYNCTSLKRVTIQDNKPSCVKKI---GRQAFMFCSELTDIPILDS-VTEIDS- 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECT-TTTTTCTTCCEEEEGGGCCCCCCEE---CTTTTTTCTTCCBCGGGTT-CSEECT-
T ss_pred hccCCCCcCEEEEECCC-eeEEhH-HHhhCCccCceEeecCCCCCeeeEe---chhhchhcccceeeccCCc-cceehh-
Confidence 344442 3666666432 443444 556666666666665543 2222 2233333556665555433 233322
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.++.. +.+|+.+.+..+ +.......|... ..|+.+.+..+ +...... +|.. ..|+.+. ..+ +... -
T Consensus 131 -~aF~~--c~~L~~i~lp~~-~~~I~~~~F~~c-~~L~~i~~~~~-~~~I~~~-aF~~-~~l~~i~ip~~-~~~i----~ 197 (394)
T 4gt6_A 131 -EAFHH--CEELDTVTIPEG-VTSVADGMFSYC-YSLHTVTLPDS-VTAIEER-AFTG-TALTQIHIPAK-VTRI----G 197 (394)
T ss_dssp -TTTTT--CTTCCEEECCTT-CCEECTTTTTTC-TTCCEEECCTT-CCEECTT-TTTT-CCCSEEEECTT-CCEE----C
T ss_pred -hhhhh--hcccccccccce-eeeecccceecc-cccccccccce-eeEeccc-cccc-cceeEEEECCc-cccc----c
Confidence 34444 566666666533 333334455555 56666666543 2212222 3432 3344444 111 1111 0
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccC--------------CCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFG--------------DMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~--------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
. .+|..+..++......+....+...+. ....+..+.+.. .++......| .++
T Consensus 198 ~-------~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF----~~c- 264 (394)
T 4gt6_A 198 T-------NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAF----DSC- 264 (394)
T ss_dssp T-------TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTT----TTC-
T ss_pred c-------chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEccccee----eec-
Confidence 0 345555566655554443332221111 111122222211 1111111222 222
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
..|+.+.+..+..+ .-...|.+++.|+.+.+.. .+......+|.++.+|+.++|..+ ++
T Consensus 265 -~~L~~i~lp~~~~~-----------I~~~aF~~c~~L~~i~l~~--------~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 265 -AYLASVKMPDSVVS-----------IGTGAFMNCPALQDIEFSS--------RITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp -SSCCEEECCTTCCE-----------ECTTTTTTCTTCCEEECCT--------TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred -ccccEEecccccce-----------ecCcccccccccccccCCC--------cccccCceeecCCCCcCEEEeCCc-cc
Confidence 45777777655432 1234588899999999974 333445578899999999999864 66
Q ss_pred CCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 309 GMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 309 ~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
.+...+|.++.+|+.+.+.+.+ ..+....+.++.+|+.+++.++...
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~sv-----------------------~~I~~~aF~~C~~L~~i~~~~~~~~---------- 370 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSSV-----------------------TKIPESAFSNCTALNNIEYSGSRSQ---------- 370 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTTC-----------------------CBCCGGGGTTCTTCCEEEESSCHHH----------
T ss_pred EehHhHhhCCCCCCEEEECccc-----------------------CEEhHhHhhCCCCCCEEEECCceee----------
Confidence 5667899999999776533322 2345556678899999999987543
Q ss_pred ccCCCcccccCCCCCCeeeccCCcC
Q 047429 389 LIGKIPRSFSQLSHLGVVNLSNNNF 413 (466)
Q Consensus 389 ~~~~ip~~l~~l~~L~~L~Ls~N~l 413 (466)
-.++..+..|+.+.+..|.+
T Consensus 371 -----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 -----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -----HHTCBCCCCC----------
T ss_pred -----hhhhhccCCCCEEEeCCCCE
Confidence 12467788899998887765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=103.07 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEecCCC-cCCCCCcccCCCCCcCEEEeeC-CcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc
Q 047429 181 DLDLSKN-QITGIPKSFGDMCCLKTLKIHD-NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258 (466)
Q Consensus 181 ~L~Ls~n-~l~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~ 258 (466)
.++++++ .++.+|. +..+++|++|+|++ |.+++..+..|..+ ++|+.|+|++|+|++.. |.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l------~~L~~L~l~~N~l~~~~----------~~ 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGL------GELRNLTIVKSGLRFVA----------PD 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSC------CCCSEEECCSSCCCEEC----------TT
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccc------cCCCEEECCCCccceeC----------HH
Confidence 4567766 6777777 77777777777775 77776666666555 56777777777777332 23
Q ss_pred ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 259 QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.|..+++|++|+|++|+| ++..+..+..++ |+.|+|.+|.+...
T Consensus 75 ~~~~l~~L~~L~l~~N~l-------~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNAL-------ESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp GGGSCSCCCEEECCSSCC-------SCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred HhcCCcCCCEEeCCCCcc-------ceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 467777777777777544 333333444444 77777777777643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-09 Score=99.32 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=60.9
Q ss_pred cCCcEEeCCCccccc-cc---h---HHHhhcCCCCcEEEccCCCCCC-----c--cchHHHHhcCCCCCCEEEcCCCCCC
Q 047429 13 EDLQSINIGLNAIRV-RK---F---DQWLSYHNKLTSLSLQGLDLRE-----A--TDWLQVVITGLPSLRELDLSSSAPP 78 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~-~~---~---~~~~~~l~~L~~L~Ls~n~l~~-----~--~~~~~~~~~~l~~L~~L~Ls~n~l~ 78 (466)
..++.|.+....+.+ .. . ..+...+++|+.|.+....... . ..+. .+...+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc
Confidence 456677776544431 11 0 1234467788888886653321 1 1123 33333788888888777311
Q ss_pred CCCccccccccCCCCCccEEEcCCCCCCchhhhhhh--cccCCCcEEEccC
Q 047429 79 KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS--HISKSLVYLDLSN 127 (466)
Q Consensus 79 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~L~~L~Ls~ 127 (466)
... .+ . +++|++|++..|.+.......+. .+ ++|++|+|+.
T Consensus 186 ~l~----~~-~--~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~ 228 (362)
T 2ra8_A 186 SIG----KK-P--RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYV 228 (362)
T ss_dssp BCC----SC-B--CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEEC
T ss_pred eec----cc-c--CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEec
Confidence 111 11 2 67888888888887755545554 56 7888888753
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-07 Score=86.39 Aligned_cols=273 Identities=9% Similarity=0.057 Sum_probs=127.1
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..++....+|+.+.+.. .++.+.. ..|.++.+|+.++|..+ ++.+ ....+.++ +|+.+.+..+ ++.+.. .
T Consensus 39 ~~~~~~~~~i~~v~ip~-~vt~Ig~-~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~~-l~~I~~--~ 108 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNS-GITSIGE-ANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGMER-VKKFGD--Y 108 (379)
T ss_dssp STTGGGGGGCSEEEECT-TEEEECT-TTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECTT-CCEECT--T
T ss_pred ccccccccCCEEEEeCC-CccChHH-HHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCce-eeEecc--c
Confidence 34455556666666653 3444444 56777777777777543 4444 22333323 5666665443 333333 2
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCC-
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLP- 163 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~- 163 (466)
+|.. .+|+.+.+..+ +.......|.. .+++.+.+..+ ++..... .|..+..++... ..............
T Consensus 109 aF~~---~~L~~i~lp~~-~~~i~~~~F~~--~~l~~~~~~~~-v~~i~~~-~f~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (379)
T 4h09_A 109 VFQG---TDLDDFEFPGA-TTEIGNYIFYN--SSVKRIVIPKS-VTTIKDG-IGYKAENLEKIEVSSNNKNYVAENYVLY 180 (379)
T ss_dssp TTTT---CCCSEEECCTT-CCEECTTTTTT--CCCCEEEECTT-CCEECSC-TTTTCTTCCEEEECTTCSSEEEETTEEE
T ss_pred eecc---CCcccccCCCc-ccccccccccc--ceeeeeeccce-eeccccc-hhcccccccccccccccceeecccceec
Confidence 3333 35777776654 22233333433 24555544433 2222222 455555554443 21111000000000
Q ss_pred ccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.........+.....+..+.+...........+..+.+|+.+.+..+ +.......|... ..|+.+.+..+ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~------~~L~~i~lp~~-v~ 252 (379)
T 4h09_A 181 NKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM------KALDEIAIPKN-VT 252 (379)
T ss_dssp ETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC------SSCCEEEECTT-CC
T ss_pred ccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCC------ccceEEEcCCC-cc
Confidence 00000001233333444444433221112334555666666666543 222223333222 34666666554 33
Q ss_pred ccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 244 ~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
.+. .+|.++.+|+.+.+..+ +.......|.++++|+.+++.++.++.+...+|.++.+|+
T Consensus 253 -----------~I~~~aF~~~~~l~~i~l~~~--------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 253 -----------SIGSFLLQNCTALKTLNFYAK--------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp -----------EECTTTTTTCTTCCEEEECCC--------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred -----------EeCccccceeehhcccccccc--------ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 222 34666777777776542 2223345667777777777777777655566777766663
Q ss_pred h
Q 047429 323 Q 323 (466)
Q Consensus 323 ~ 323 (466)
.
T Consensus 314 ~ 314 (379)
T 4h09_A 314 S 314 (379)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-09 Score=93.56 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=89.7
Q ss_pred ccccCCCccCEEecCCC-cCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 171 YAFSNVTSLMDLDLSKN-QITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n-~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
..+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.......+...+... ++|++|+|++|.|++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n--~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN--NTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC--SSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC--CCcCEEECcCCcCCH
Confidence 35667889999999999 8876 445677788999999999999765554444433211 469999999999974
Q ss_pred cCCCCcccccccCcccCCCCCCcEEeC--CCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 245 SLPGVTELDGTFPKQFCRPSSLVELDL--ESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 245 ~~~~~~~l~~~lp~~~~~l~~L~~L~L--~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.... .+...+...++|++|+| ++|.|.-.+ ...+...+...++|++|+|++|.+.
T Consensus 108 ~g~~------~l~~~L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGIL------ALVEALQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH------HHHHGGGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH------HHHHHHHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3211 34556777889999999 776651000 0113345566789999999999986
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=86.77 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=76.4
Q ss_pred cccCCcCCcEEeCCCc-cccccch---HHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCC
Q 047429 8 FHISLEDLQSINIGLN-AIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 81 (466)
.+...+.|++|+|++| .+..... ...+...+.|++|+|++|.+.... .+...+.. .+.|++|+|++|.+++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHH
Confidence 3456778888888888 7765432 134556677888888888876541 11223333 677888888888877542
Q ss_pred c--cccccccCCCCCccEEEc--CCCCCCchhh----hhhhcccCCCcEEEccCCccc
Q 047429 82 Y--RSHSLVNSSSSSLTHLHL--SLCGLSNSAY----HCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 82 ~--~~~~~~~~~l~~L~~L~L--s~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
. ....+.. .++|++|++ ++|.++.... ..+... ++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSHH
T ss_pred HHHHHHHHHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCcCEEeccCCCCC
Confidence 2 0123344 567888888 7788775433 334444 67888888888765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-09 Score=99.14 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=115.9
Q ss_pred ccCCcCCcEEeCCCcccc--------ccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCC
Q 047429 9 HISLEDLQSINIGLNAIR--------VRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKI 80 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 80 (466)
+.++++|+.|.+...... .......+..+++|+.|+|++|.-... +. .. +++|++|++..|.+...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~--~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK--KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS--CB-CTTCSEEEEECSBCCHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc--cc-CCCCcEEEEecCCCChH
Confidence 457789999998765321 011225678899999999998832222 22 24 89999999998877643
Q ss_pred CccccccccCCCCCccEEEcCCC--CCCch-----hhhhh--hcccCCCcEEEccCCccccCCChhhhhcCCcccccccc
Q 047429 81 NYRSHSLVNSSSSSLTHLHLSLC--GLSNS-----AYHCL--SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL 151 (466)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~-----~~~~l--~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~ 151 (466)
.. ..+....+++|++|+|+.+ ...+. +...+ ..+ ++|++|+|.+|.+.+..+. .+.
T Consensus 209 ~l--~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~-~la----------- 273 (362)
T 2ra8_A 209 VV--EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVE-MFL----------- 273 (362)
T ss_dssp HH--HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHH-HHH-----------
T ss_pred HH--HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHH-HHH-----------
Confidence 32 2333222899999998632 11111 11112 134 7899999998887643222 111
Q ss_pred cccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhcccc
Q 047429 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAG 226 (466)
Q Consensus 152 n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 226 (466)
....+++|++|+|+.|.++. ++..+..+++|+.|++++|.++......+...+
T Consensus 274 --------------------~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 274 --------------------ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp --------------------HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred --------------------hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 11246789999999988876 334445678999999999988755544443321
Q ss_pred ccccccceEecCCcc
Q 047429 227 CAKKSLQSFMLQNNM 241 (466)
Q Consensus 227 ~~~~~L~~L~L~~n~ 241 (466)
...+++++++
T Consensus 332 -----g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -----PMKIDVSDSQ 341 (362)
T ss_dssp -----CSEEECCSBC
T ss_pred -----CCEEEecCCc
Confidence 2456777665
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-06 Score=82.46 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=165.0
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
...+|.++.+|+.+++..+ ++.+.. ..|.++ .|+.+.+..+ +..+ ....+. ..+|+.+++..+. +....
T Consensus 61 g~~aF~~C~~L~~I~lp~~-v~~Ig~-~aF~~c-~l~~i~~~~~-l~~I---~~~aF~-~~~L~~i~lp~~~-~~i~~-- 129 (379)
T 4h09_A 61 GEANFNSCYNMTKVTVAST-VTSIGD-GAFADT-KLQSYTGMER-VKKF---GDYVFQ-GTDLDDFEFPGAT-TEIGN-- 129 (379)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECT-TTTTTC-CCCEEEECTT-CCEE---CTTTTT-TCCCSEEECCTTC-CEECT--
T ss_pred HHHHhhCCCCCCEEEeCCc-ceEech-hhhcCC-CCceEECCce-eeEe---ccceec-cCCcccccCCCcc-ccccc--
Confidence 3467889999999999754 555555 778887 6888887654 4444 334455 4589999997653 33333
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCCh-----------hhhhcCCcccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPD-----------YAFRNMTSLASLTSLNY 153 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~-----------~~~~~l~~L~~L~~~n~ 153 (466)
..+.. .+++...+..+ ++......|... ..++...+..+........ ..+.....+..+.....
T Consensus 130 ~~F~~---~~l~~~~~~~~-v~~i~~~~f~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
T 4h09_A 130 YIFYN---SSVKRIVIPKS-VTTIKDGIGYKA-ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST 204 (379)
T ss_dssp TTTTT---CCCCEEEECTT-CCEECSCTTTTC-TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT
T ss_pred ccccc---ceeeeeeccce-eeccccchhccc-ccccccccccccceeecccceecccccceeccccccccccccccccc
Confidence 34443 35666666544 444555566666 7788877765543211100 01111222222220001
Q ss_pred cccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhhhcccccccccc
Q 047429 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232 (466)
Q Consensus 154 l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 232 (466)
.... .. ..+..+.+|+.+.+..+ +..+ ..++.++..|+.+.+..+ ++......|... .+|
T Consensus 205 ~~~i----~~-------~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~------~~l 265 (379)
T 4h09_A 205 VKTV----TA-------YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC------TAL 265 (379)
T ss_dssp CCEE----CT-------TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC------TTC
T ss_pred eeEE----ee-------cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee------ehh
Confidence 1111 11 35667778888888654 3333 346778888999988765 444444444333 458
Q ss_pred ceEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 233 QSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
+.+.+..+ ++ .++ ..|..+++|+.+.+.++. ++.....+|.+|.+|+.++|..+ ++.+.
T Consensus 266 ~~i~l~~~-i~-----------~i~~~aF~~c~~L~~i~l~~~~-------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 266 KTLNFYAK-VK-----------TVPYLLCSGCSNLTKVVMDNSA-------IETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp CEEEECCC-CS-----------EECTTTTTTCTTCCEEEECCTT-------CCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred cccccccc-ce-----------eccccccccccccccccccccc-------cceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 88887654 33 333 358888999999988743 33344567889999999999754 66566
Q ss_pred hhhhhhhhhhhhcCCCCc
Q 047429 312 PTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~ 329 (466)
..+|.++++|+.+.+...
T Consensus 326 ~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT
T ss_pred HHHhhCCCCCCEEEECCc
Confidence 778999999887765443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=84.93 Aligned_cols=81 Identities=27% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC--CCcEEEccCCccccCCCh-----
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK--SLVYLDLSNNQLQGPTPD----- 136 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--~L~~L~Ls~n~l~~~~~~----- 136 (466)
+++|++|+|++|.++++......+.. +++|++|+|++|.+++. ..+..+ . +|++|+|++|.+.+..|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~--l~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQK--APNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHH--STTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhh--CCCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhHH
Confidence 66777777777777665432123344 66777777777777654 223333 3 677777777777654441
Q ss_pred -hhhhcCCcccccc
Q 047429 137 -YAFRNMTSLASLT 149 (466)
Q Consensus 137 -~~~~~l~~L~~L~ 149 (466)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1355667777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-07 Score=86.29 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=68.2
Q ss_pred ccCCcCCcE--EeCCCccccccc--hHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 9 HISLEDLQS--INIGLNAIRVRK--FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 9 ~~~l~~L~~--L~Ls~n~i~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
+...+.|+. ++++.|...... .......+++|+.|+|++|.++++..++..+.. +++|++|+|++|.+.+....
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~l- 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSEREL- 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGGG-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchhh-
Confidence 444445554 566666432111 101224678888888888888876433444555 88888888888888876331
Q ss_pred cccccCCCCCccEEEcCCCCCCchhh-------hhhhcccCCCcEEE
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAY-------HCLSHISKSLVYLD 124 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~l~~~L~~L~ 124 (466)
..+.. + +|++|+|++|.+.+..| ..+..+ ++|+.||
T Consensus 215 ~~l~~--l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~-P~L~~LD 257 (267)
T 3rw6_A 215 DKIKG--L-KLEELWLDGNSLCDTFRDQSTYISAIRERF-PKLLRLD 257 (267)
T ss_dssp GGGTT--S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHC-TTCCEES
T ss_pred hhccc--C-CcceEEccCCcCccccCcchhHHHHHHHHC-cccCeEC
Confidence 23333 3 78888888888875433 234555 8888775
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-07 Score=76.86 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccC--CCCCccEEEcCCCC-CCchhhhhhh
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNS--SSSSLTHLHLSLCG-LSNSAYHCLS 114 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~l~ 114 (466)
.|++||+++|.++... ...+.. +++|++|+|++|. +++..- ..+... ..++|++|++++|. ++...-..+.
T Consensus 62 ~L~~LDLs~~~Itd~G--L~~L~~-~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG--FDHMEG-LQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGG--GGGGTT-CSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHH--HHHhcC-CCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4666666666655442 223333 6666666666664 443222 222220 01356777777663 6655555566
Q ss_pred cccCCCcEEEccCCc
Q 047429 115 HISKSLVYLDLSNNQ 129 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~ 129 (466)
.+ ++|++|++++|.
T Consensus 137 ~~-~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HF-RNLKYLFLSDLP 150 (176)
T ss_dssp GC-TTCCEEEEESCT
T ss_pred cC-CCCCEEECCCCC
Confidence 66 677777777764
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=73.06 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcC---CCCCCEEEcCCCC-CCCCCccccccc
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITG---LPSLRELDLSSSA-PPKINYRSHSLV 88 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~---l~~L~~L~Ls~n~-l~~~~~~~~~~~ 88 (466)
.|+.||++++.+++... ..+..+++|++|+|++|. +++.. ...+... .++|++|+|++|. +++..- ..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDKGI--IALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGG
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHh
Confidence 57888888888887777 677788888888888885 55432 3344431 2468888888875 665443 4455
Q ss_pred cCCCCCccEEEcCCCC-CC
Q 047429 89 NSSSSSLTHLHLSLCG-LS 106 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~-l~ 106 (466)
. +++|++|++++|. ++
T Consensus 137 ~--~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 H--FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp G--CTTCCEEEEESCTTCC
T ss_pred c--CCCCCEEECCCCCCCC
Confidence 5 7888888888885 44
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.9e-07 Score=76.40 Aligned_cols=125 Identities=10% Similarity=0.176 Sum_probs=87.1
Q ss_pred cccCCCccCEEecCCC-cCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 172 AFSNVTSLMDLDLSKN-QITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n-~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+...+.|++|+|++| .|.. +.+.+..-+.|+.|+|++|.+.+.....+...+... .+|++|+|++|.|++.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N--~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC--CccCeEecCCCcCCHH
Confidence 3455678999999985 7765 455677788999999999999866655555443322 5699999999999743
Q ss_pred CCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc----cCCCCCCCCCCccEEEccCCCCC
Q 047429 246 LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING----SATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 246 ~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
... .+-+.+...+.|++|+|++|.. +.+.. .+...+..-+.|+.|+++.|.+.
T Consensus 114 Ga~------ala~aL~~N~tL~~L~L~n~~~----~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLA------RLLRSTLVTQSIVEFKADNQRQ----SVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHH------HHHHHTTTTCCCSEEECCCCSS----CCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHH------HHHHHHhhCCceeEEECCCCcC----cCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 221 3345567778899999986421 02221 23345666788999999988764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=6.6e-05 Score=64.66 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCcCCcEEeCCCc-cccccch---HHHhhcCCCCcEEEccCCCCCCc--cchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 11 SLEDLQSINIGLN-AIRVRKF---DQWLSYHNKLTSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 11 ~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
+-+.|++|+|++| .|.+... ...+..-..|+.|+|++|.+... ..+...+.. -+.|++|+|++|.|+......
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHH
Confidence 3456777777764 5543322 13344556677777777776543 111223333 566777777777766443210
Q ss_pred --cccccCCCCCccEEEcCCC---CCCch----hhhhhhcccCCCcEEEccCCcc
Q 047429 85 --HSLVNSSSSSLTHLHLSLC---GLSNS----AYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 85 --~~~~~~~l~~L~~L~Ls~n---~l~~~----~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
..+.. -+.|++|+|++| .+... +...+..- +.|+.|+++.|.+
T Consensus 118 la~aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred HHHHHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCc
Confidence 11222 455777777654 23322 22233333 5677777765543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=46.83 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=28.5
Q ss_pred EEecCCCcCC--CCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 181 DLDLSKNQIT--GIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 181 ~L~Ls~n~l~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
.++.+++.++ .+|..+. ++|++|+|++|+|+...+..|..+ ++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l------~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDAL------PALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGC------TTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhc------cccCEEEecCCCe
Confidence 4555566655 4554322 245666666666655544444443 3455555555544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.017 Score=46.11 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=31.1
Q ss_pred EEEcCCCCCC--CCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 69 ELDLSSSAPP--KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 69 ~L~Ls~n~l~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
.++.+++.++ .++. .+ ..+|++|+|++|.|+.+.+..|..+ ++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~---~l----p~~l~~L~Ls~N~l~~l~~~~f~~l-~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT---AF----PVDTTELVLTGNNLTALPPGLLDAL-PALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS---CC----CTTCSEEECTTSCCSSCCTTTGGGC-TTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC---CC----CcCCCEEECCCCcCCccChhhhhhc-cccCEEEecCCCee
Confidence 4555665555 4332 11 2356666666666665555556555 66666666666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 466 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 63.6 bits (153), Expect = 9e-12
Identities = 48/266 (18%), Positives = 88/266 (33%), Gaps = 18/266 (6%)
Query: 174 SNVTSLMDLDLSKNQITG---IPKSFGDMCCLKT--LKIHDNILTAKLPELFLNFSAGCA 228
+ + +LDLS + IP S ++ L + +N++ P +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT 288
+ + + + LD ++ + + N I+G+
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 289 PKLCSSPMLQVLDFSHNN-ISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQD 347
S L N ++G +P NL+ + S N++ L + +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 348 RALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVN 407
D +DL +N + G +P+ +QL L +N
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLN 274
Query: 408 LSNNNFSGKIPSSIPLQTFEASAYKN 433
+S NN G+IP LQ F+ SAY N
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYAN 300
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 61.6 bits (148), Expect = 5e-11
Identities = 62/347 (17%), Positives = 114/347 (32%), Gaps = 43/347 (12%)
Query: 93 SSLTHLHLSLCGLSNSAYHCLSHIS--KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS 150
+T L G+ + + + +L ++ SNNQL TP +N+T L +
Sbjct: 44 DQVTTLQADRLGIKS-----IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILM 95
Query: 151 ----------LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMC 200
L +T ++ +L + N+T+L L+LS N I+ I G
Sbjct: 96 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155
Query: 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF 260
+ + L L + + + + + T +
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 215
Query: 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLS 319
++L EL L NQL L S L LD ++N IS + P + L L+
Sbjct: 216 GILTNLDELSLNGNQL---------KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 266
Query: 320 AMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSG 379
+ + + L + + + D L + L NN+S
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNE-----NQLEDISPISNLKNLTYLTLYFNNISD 321
Query: 380 KIP----EEITSLLIG----KIPRSFSQLSHLGVVNLSNNNFSGKIP 418
P ++ L S + L+++ ++ +N S P
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 27/151 (17%)
Query: 61 ITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120
++GL L EL L ++ I S + LT L + K+L
Sbjct: 259 LSGLTKLTELKLGANQISNI---------SPLAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSL 179
YL L N + +P ++T L L + N ++ +S + +N+T++
Sbjct: 310 TYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS-------------SLANLTNI 353
Query: 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
L NQI+ + ++ + L ++D
Sbjct: 354 NWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 52/283 (18%), Positives = 87/283 (30%), Gaps = 48/283 (16%)
Query: 30 FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89
++ N ++ +S +T L L L N S V
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149
+ ++L L + +S+ I +L L L+ NQL+ + N+T L
Sbjct: 194 AKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIGTLASLTNLTDL--DL 248
Query: 150 SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD 209
+ N I+ ++ S +T L +L L NQI+ I G +
Sbjct: 249 ANNQISNLA-------------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVEL 269
+ S K+L L N +S P + L L
Sbjct: 296 Q---------LEDISPISNLKNLTYLTLYFNNISDISP------------VSSLTKLQRL 334
Query: 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312
+N++ S L + + L HN IS + P
Sbjct: 335 FFANNKV---------SDVSSLANLTNINWLSAGHNQISDLTP 368
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.7 bits (143), Expect = 2e-10
Identities = 47/302 (15%), Positives = 88/302 (29%), Gaps = 44/302 (14%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173
+ LDL NN++ F+N+ +L +L AF
Sbjct: 27 KDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLI----------LINNKISKISPGAF 75
Query: 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQ 233
+ + L L LSKNQ+ +P+ L+ L++H+N +T +F
Sbjct: 76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVF------------- 120
Query: 234 SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293
L ++ + G F L + + + +
Sbjct: 121 -NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---------- 169
Query: 294 SPMLQVLDFSHNNISGMVPTCLNNLSA-MVQNGSSNVIVEYRIQLIDDPEFDYQDRALLV 352
P L L N I+ + L L+ S N I + + +
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229
Query: 353 WKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412
+ + L +NN+S + P ++ + V+L +N
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP------PGYNTKKASYSGVSLFSNP 283
Query: 413 FS 414
Sbjct: 284 VQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 13/210 (6%)
Query: 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95
N+L L + + + IT + L+ ++ + +
Sbjct: 87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 96 THL-HLSLCGLSNSAYHCL-SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNY 153
+ LS ++++ + + SL L L N++ + + + +LA L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKL----- 200
Query: 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213
S + +N L +L L+ N++ +P D ++ + +H+N ++
Sbjct: 201 -----GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255
Query: 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243
A F K S L +N +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 8e-06
Identities = 42/327 (12%), Positives = 78/327 (23%), Gaps = 54/327 (16%)
Query: 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS 150
+ GL I + + L N++ S + +
Sbjct: 9 YNEPKVTTSCPQQGLQ----AVPVGIPAASQRIFLHGNRISHVPAA-------SFRACRN 57
Query: 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
L + S I + + + P +F + L TL +
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV--DPATFHGLGRLHTLHLDRC 115
Query: 211 ILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELD 270
L +LQ LQ+N L F +L
Sbjct: 116 ------GLQELGPGLFRGLAALQYLYLQDNALQALPDDT----------FRDLGNL---- 155
Query: 271 LESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI 330
L+L N I+ L L N ++ + P +L ++
Sbjct: 156 ---THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 331 VEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP--KSIDLSDNNLSGKIPEEITSL 388
+ P Q L P + + S + + +P+
Sbjct: 213 LSALPTEALAPLRALQ-YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR---- 267
Query: 389 LIGKIPRSFSQLSHLGVVNLSNNNFSG 415
L+ + L+ N+ G
Sbjct: 268 -----------LAGRDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 13/187 (6%)
Query: 37 HNKLTSL------SLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88
LT+L L L E + + L +L+L + K+ V
Sbjct: 19 KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78
Query: 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL--- 145
+ + SL L + L L+G +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 146 --ASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLK 203
L + + P + + +L L L +N + IPK F L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Query: 204 TLKIHDN 210
+H N
Sbjct: 199 FAFLHGN 205
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 19/149 (12%)
Query: 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSA 225
L+ ++N +LDL +I I + + DN +
Sbjct: 7 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--------KLDG 58
Query: 226 GCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285
+ L++ ++ NN + G+ + + +SLVEL L+
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118
Query: 286 SATPKLCSSPM-----------LQVLDFS 303
+ + ++VLDF
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.001
Identities = 52/423 (12%), Positives = 103/423 (24%), Gaps = 23/423 (5%)
Query: 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLR-EATDWLQVVITGLPSLRELDL 72
D+QS++I + ++ + L + + L L + + P+L EL+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 73 SSSA-PPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131
S+ + + + S + L L C L+ + LS ++L L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 132 GPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG 191
L + CSL P + N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 192 IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251
LK L + + + L+ L + G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242
Query: 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
+ P S L L + + + S L + + +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302
Query: 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLP---- 367
+ L+ I + G+
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362
Query: 368 ---------KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
+ + L+D ++S + + L L ++LSNN
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATL--------LANHSLRELDLSNNCLGDAGI 414
Query: 419 SSI 421
+
Sbjct: 415 LQL 417
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 10/114 (8%)
Query: 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL 151
S + L + LS++ + L + + + L + L + +L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 152 ----NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC 201
N + + + L + + L L +TG
Sbjct: 61 NLRSNELGDVGVHCVLQGL------QTPSCKIQKLSLQNCCLTGAGCGVLSSTL 108
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.5 bits (81), Expect = 0.003
Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 105 LSNSAYHCLSHISK--SLVYLDLSNNQLQGPTP-----------DYAFRNMTSLASLTSL 151
L++ L H+ + + +LDLS+N+L+ P + + ++ + +L
Sbjct: 5 LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64
Query: 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM 199
+ + C+ + + L+ L+L N + +
Sbjct: 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (80), Expect = 0.004
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 26/128 (20%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
L L+ +T + + + L + N L A P L +
Sbjct: 3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALA-------------------AL 42
Query: 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301
+ ++ L EL L +N+L +A L S P L +L+
Sbjct: 43 RCLEVLQASDNALENVDGVANLPRLQELLLCNNRL------QQSAAIQPLVSCPRLVLLN 96
Query: 302 FSHNNISG 309
N++
Sbjct: 97 LQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (80), Expect = 0.004
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
+ + LDLS N++ +P + + CL+ L+ DN N
Sbjct: 15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--------LENVDGVANLPR 66
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
LQ +L NN L S + LV L+L+ N L
Sbjct: 67 LQELLLCNNRLQQSAA---------IQPLVSCPRLVLLNLQGNSL 102
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.1 bits (84), Expect = 0.004
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 27/103 (26%)
Query: 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230
SL +L++S N++ +P L+ L N L ++PEL +
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLA-EVPELP---------Q 324
Query: 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLES 273
+L+ ++ N L P + P S+ +L + S
Sbjct: 325 NLKQLHVEYNPLR-EFPDI-------------PESVEDLRMNS 353
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.66 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.64 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.62 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.6 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.59 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.07 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.5 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.41 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.08 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.0 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.52 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.48 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=1.3e-28 Score=232.67 Aligned_cols=255 Identities=31% Similarity=0.465 Sum_probs=188.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCC-CCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSL-CGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 144 (466)
+++.|+|++|.+.+..+....++. +++|++|+|++ |.+++.+|..+.++ ++|++|+|++|++.+..+. .+..+..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~--L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~~-~~~~~~~ 126 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPD-FLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCG-GGGGCTT
T ss_pred EEEEEECCCCCCCCCCCCChHHhc--Cccccccccccccccccccccccccc-cccchhhhccccccccccc-cccchhh
Confidence 566777777776654222245666 77777777775 66766677777777 7777777777777766666 6777777
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCc-CEEEeeCCcCCCccchhhh
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCL-KTLKIHDNILTAKLPELFL 221 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~ 221 (466)
|+.++ +.|.+... +| ..+..+++++.+++++|.+.+ +|..+..+..+ +.+++++|++++..+..+.
T Consensus 127 L~~l~l~~N~~~~~----~p-------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~ 195 (313)
T d1ogqa_ 127 LVTLDFSYNALSGT----LP-------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCEEECCSSEEESC----CC-------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred hccccccccccccc----Cc-------hhhccCcccceeecccccccccccccccccccccccccccccccccccccccc
Confidence 77777 66666655 55 677888888888888888876 78777777665 7888888888887777654
Q ss_pred hccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEE
Q 047429 222 NFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301 (466)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~ 301 (466)
.. ....++++++...| .+|..+..+++++.+++++|.+ .+. +..++.+++|++|+
T Consensus 196 ~l-------~~~~l~l~~~~~~~----------~~~~~~~~~~~l~~l~~~~~~l-------~~~-~~~~~~~~~L~~L~ 250 (313)
T d1ogqa_ 196 NL-------NLAFVDLSRNMLEG----------DASVLFGSDKNTQKIHLAKNSL-------AFD-LGKVGLSKNLNGLD 250 (313)
T ss_dssp GC-------CCSEEECCSSEEEE----------CCGGGCCTTSCCSEEECCSSEE-------CCB-GGGCCCCTTCCEEE
T ss_pred cc-------cccccccccccccc----------cccccccccccccccccccccc-------ccc-cccccccccccccc
Confidence 43 35678888887774 3455677888899999988654 333 44678888999999
Q ss_pred ccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCC
Q 047429 302 FSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKI 381 (466)
Q Consensus 302 Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i 381 (466)
|++|+++|.+|+.|+++++| ++|||++|+|+|.+
T Consensus 251 Ls~N~l~g~iP~~l~~L~~L----------------------------------------------~~L~Ls~N~l~g~i 284 (313)
T d1ogqa_ 251 LRNNRIYGTLPQGLTQLKFL----------------------------------------------HSLNVSFNNLCGEI 284 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTC----------------------------------------------CEEECCSSEEEEEC
T ss_pred CccCeecccCChHHhCCCCC----------------------------------------------CEEECcCCcccccC
Confidence 99999998888888877666 88999999998755
Q ss_pred cHHHHhhccCCCcccccCCCCCCeeeccCCc-Cccc-CCC
Q 047429 382 PEEITSLLIGKIPRSFSQLSHLGVVNLSNNN-FSGK-IPS 419 (466)
Q Consensus 382 p~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~-l~~~-ip~ 419 (466)
| .++++++|+.+++++|+ ++|. +|.
T Consensus 285 P-------------~~~~L~~L~~l~l~~N~~l~g~plp~ 311 (313)
T d1ogqa_ 285 P-------------QGGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp C-------------CSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred C-------------CcccCCCCCHHHhCCCccccCCCCCC
Confidence 5 25678889999999997 5553 553
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.1e-25 Score=218.26 Aligned_cols=319 Identities=19% Similarity=0.240 Sum_probs=189.4
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
..+.+|++|+++++.|+.. +.+..+++|++|++++|+++++ + .+.. +++|++|++++|.+.+..+ +..
T Consensus 41 ~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~l---~-~l~~-L~~L~~L~L~~n~i~~i~~----l~~ 108 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI---T-PLKN-LTKLVDILMNNNQIADITP----LAN 108 (384)
T ss_dssp HHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC---G-GGTT-CTTCCEEECCSSCCCCCGG----GTT
T ss_pred HHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCCC---c-cccC-Ccccccccccccccccccc----ccc
Confidence 4566788888888887753 3466788888888888888776 2 2444 8888888888888776533 445
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccc------cCC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISK------CSL 162 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~------~~l 162 (466)
+++|+.|+++++.+++..+.. .. ..+..+....|.+...... ............ .......... ...
T Consensus 109 --l~~L~~L~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (384)
T d2omza2 109 --LTNLTGLTLFNNQITDIDPLK--NL-TNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182 (384)
T ss_dssp --CTTCCEEECCSSCCCCCGGGT--TC-TTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred --ccccccccccccccccccccc--cc-ccccccccccccccccccc-cccccccccccccccchhhhhccccccccccc
Confidence 778888888888776543322 22 4455555555544321111 000000000000 0000000000 000
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
..........+..+++++.+++++|.+++++. +..+++|++|++++|.+++. + .+... ++|+.+++++|.+
T Consensus 183 ~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~-~-~l~~l------~~L~~L~l~~n~l 253 (384)
T d2omza2 183 SSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G-TLASL------TNLTDLDLANNQI 253 (384)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGGGC------TTCSEEECCSSCC
T ss_pred cccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc-c-hhhcc------cccchhccccCcc
Confidence 00001111356677788888888888887543 45567888888888888753 2 22222 5688888888888
Q ss_pred cccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 243 ~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
++ ++. +..+++|++|++++|++ .+ + ..+..++.++.++++.|.+++. ..+..++.++
T Consensus 254 ~~-----------~~~-~~~~~~L~~L~l~~~~l-------~~-~-~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~ 310 (384)
T d2omza2 254 SN-----------LAP-LSGLTKLTELKLGANQI-------SN-I-SPLAGLTALTNLELNENQLEDI--SPISNLKNLT 310 (384)
T ss_dssp CC-----------CGG-GTTCTTCSEEECCSSCC-------CC-C-GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCS
T ss_pred CC-----------CCc-ccccccCCEeeccCccc-------CC-C-Cccccccccccccccccccccc--cccchhcccC
Confidence 73 222 66778888888888654 21 2 2356677777777777777653 2366666666
Q ss_pred hcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 323 QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 323 ~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
.++++++-. .++ ..+..+++|+.|++++|+++ .+| ++.++++
T Consensus 311 ~L~ls~n~l----------------------~~l--~~l~~l~~L~~L~L~~n~l~-------------~l~-~l~~l~~ 352 (384)
T d2omza2 311 YLTLYFNNI----------------------SDI--SPVSSLTKLQRLFFANNKVS-------------DVS-SLANLTN 352 (384)
T ss_dssp EEECCSSCC----------------------SCC--GGGGGCTTCCEEECCSSCCC-------------CCG-GGGGCTT
T ss_pred eEECCCCCC----------------------CCC--cccccCCCCCEEECCCCCCC-------------CCh-hHcCCCC
Confidence 666433211 011 12345777888888888887 333 4777888
Q ss_pred CCeeeccCCcCccc
Q 047429 403 LGVVNLSNNNFSGK 416 (466)
Q Consensus 403 L~~L~Ls~N~l~~~ 416 (466)
|++|++++|++++.
T Consensus 353 L~~L~l~~N~l~~l 366 (384)
T d2omza2 353 INWLSAGHNQISDL 366 (384)
T ss_dssp CCEEECCSSCCCBC
T ss_pred CCEEECCCCcCCCC
Confidence 88888888888743
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.94 E-value=1.6e-26 Score=218.02 Aligned_cols=244 Identities=28% Similarity=0.451 Sum_probs=200.5
Q ss_pred CCccEEEcCCCCCCc--hhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 93 SSLTHLHLSLCGLSN--SAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
..+++|+|+++.+.+ .+|..++++ ++|++|+|++ |.+.|.+|. .++++++|++|+ ++|.+.+. .+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~----~~----- 118 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA----IP----- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE----CC-----
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcC-cccccccccccccccccccc-ccccccccchhhhcccccccc----cc-----
Confidence 368999999999987 467899999 9999999997 889989999 899999999999 99998876 44
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+.+|+.++++.|.+.. +|..+.+++.++++++++|.+.+.+|..+..+. ..++.+++++|++++..+
T Consensus 119 --~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~-----~l~~~l~~~~n~l~~~~~ 191 (313)
T d1ogqa_ 119 --DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp --GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----TTCCEEECCSSEEEEECC
T ss_pred --ccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccc-----cccccccccccccccccc
Confidence 567889999999999998877 888999999999999999999988887765551 235889999999986543
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 327 (466)
..+..+.. ..++++++ ...+.+|..+..+++|+.+++++|.+.+.+| .++.+
T Consensus 192 ----------~~~~~l~~-~~l~l~~~-------~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~--------- 243 (313)
T d1ogqa_ 192 ----------PTFANLNL-AFVDLSRN-------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS--------- 243 (313)
T ss_dssp ----------GGGGGCCC-SEEECCSS-------EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCC---------
T ss_pred ----------cccccccc-cccccccc-------ccccccccccccccccccccccccccccccc-ccccc---------
Confidence 44555544 46888874 4567888888999999999999999987654 34444
Q ss_pred CceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeee
Q 047429 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVN 407 (466)
Q Consensus 328 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~ 407 (466)
+.++.|+|++|+++| .+|.+|+++++|++|+
T Consensus 244 -------------------------------------~~L~~L~Ls~N~l~g------------~iP~~l~~L~~L~~L~ 274 (313)
T d1ogqa_ 244 -------------------------------------KNLNGLDLRNNRIYG------------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp -------------------------------------TTCCEEECCSSCCEE------------CCCGGGGGCTTCCEEE
T ss_pred -------------------------------------cccccccCccCeecc------------cCChHHhCCCCCCEEE
Confidence 344999999999997 5566789999999999
Q ss_pred ccCCcCcccCCCCCCccccccccc
Q 047429 408 LSNNNFSGKIPSSIPLQTFEASAY 431 (466)
Q Consensus 408 Ls~N~l~~~ip~~~~~~~~~~~~~ 431 (466)
|++|+|+|.+|+...+..++...+
T Consensus 275 Ls~N~l~g~iP~~~~L~~L~~l~l 298 (313)
T d1ogqa_ 275 VSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CcCCcccccCCCcccCCCCCHHHh
Confidence 999999999998766666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2e-24 Score=202.79 Aligned_cols=252 Identities=20% Similarity=0.198 Sum_probs=167.2
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.+|.+++.++.. | ..+ .+++++|+|++|+++.+ +...+..+++|++|++++|.+....+ ..+.. ++
T Consensus 11 ~~~~~~C~~~~L~~l-P-~~l--~~~l~~L~Ls~N~i~~l---~~~~f~~l~~L~~L~l~~n~~~~i~~--~~f~~--l~ 79 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKV-P-KDL--PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINNKISKISP--GAFAP--LV 79 (305)
T ss_dssp ETTEEECTTSCCCSC-C-CSC--CTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECCSSCCCCBCT--TTTTT--CT
T ss_pred cCCEEEecCCCCCcc-C-CCC--CCCCCEEECcCCcCCCc---ChhHhhccccccccccccccccccch--hhhhC--CC
Confidence 457788888877744 4 233 25788999999988887 43334348899999999998888766 56777 88
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|+++.. |..+. ..++.|++++|.+.+..+. .+.....+..+. ..+....... .+ ..
T Consensus 80 ~L~~L~l~~n~l~~l-~~~~~---~~l~~L~~~~n~l~~l~~~-~~~~~~~~~~l~~~~n~~~~~~~--~~-------~~ 145 (305)
T d1xkua_ 80 KLERLYLSKNQLKEL-PEKMP---KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGI--EN-------GA 145 (305)
T ss_dssp TCCEEECCSSCCSBC-CSSCC---TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGB--CT-------TG
T ss_pred ccCEecccCCccCcC-ccchh---hhhhhhhccccchhhhhhh-hhhccccccccccccccccccCC--Cc-------cc
Confidence 899999999988854 33332 5688888888888754443 566666666665 4443322211 11 45
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+..+++|+.+++++|.+..+|..+ .++|++|++++|..++..+..+... +.++.|++++|.+++..
T Consensus 146 ~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~------~~l~~L~~s~n~l~~~~------ 211 (305)
T d1xkua_ 146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSISAVD------ 211 (305)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTC------TTCCEEECCSSCCCEEC------
T ss_pred cccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcc------ccccccccccccccccc------
Confidence 667777888888888777766543 4677777777777776666555444 45777777777776321
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhh
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+.++..+++|++|+|++|+| ..+|..+..+++|++|+|++|+|+.+....|.
T Consensus 212 ----~~~~~~l~~L~~L~L~~N~L--------~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~ 263 (305)
T d1xkua_ 212 ----NGSLANTPHLRELHLNNNKL--------VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263 (305)
T ss_dssp ----TTTGGGSTTCCEEECCSSCC--------SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ----cccccccccceeeecccccc--------cccccccccccCCCEEECCCCccCccChhhcc
Confidence 23466667777777777544 35566677777777777777777654444433
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=5.5e-24 Score=206.12 Aligned_cols=287 Identities=24% Similarity=0.287 Sum_probs=182.5
Q ss_pred cccccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCC
Q 047429 2 QISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 2 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 81 (466)
.|++.+.+..+++|++|++++|++++.. .++++++|++|++++|.+.++. .+.. +++|+.|+++++.+++..
T Consensus 55 ~I~~l~gl~~L~nL~~L~Ls~N~l~~l~---~l~~L~~L~~L~L~~n~i~~i~----~l~~-l~~L~~L~~~~~~~~~~~ 126 (384)
T d2omza2 55 GIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADIT----PLAN-LTNLTGLTLFNNQITDID 126 (384)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG----GGTT-CTTCCEEECCSSCCCCCG
T ss_pred CCCCccccccCCCCCEEeCcCCcCCCCc---cccCCccccccccccccccccc----cccc-cccccccccccccccccc
Confidence 3556667889999999999999999763 3899999999999999998873 2445 999999999999887654
Q ss_pred ccccccccCCCCCccEEEcCCCCCC-----------------------------------------chhhhhhhcccCCC
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLS-----------------------------------------NSAYHCLSHISKSL 120 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------------------------------~~~~~~l~~l~~~L 120 (466)
.. . . ...+.......+.+. ......+..+ +++
T Consensus 127 ~~--~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 199 (384)
T d2omza2 127 PL--K--N--LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNL 199 (384)
T ss_dssp GG--T--T--CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTC
T ss_pred cc--c--c--cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc-ccc
Confidence 31 1 1 112222222111100 0111233444 667
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM 199 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l 199 (466)
+.+++++|.+++.. .+..+++|+.|+ +.|.++.. ..+..+++|+.|++++|.+++++. +..+
T Consensus 200 ~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-~~~~ 262 (384)
T d2omza2 200 ESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI-------------GTLASLTNLTDLDLANNQISNLAP-LSGL 262 (384)
T ss_dssp SEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred ceeeccCCccCCCC---cccccCCCCEEECCCCCCCCc-------------chhhcccccchhccccCccCCCCc-cccc
Confidence 77777777776443 234566777777 77766653 345667777777777777776543 5667
Q ss_pred CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeee
Q 047429 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLR 279 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~ 279 (466)
++|++|++++|.+++..+ +... +.++.+++.+|.+++ ++ .+..+++++.|++++|++
T Consensus 263 ~~L~~L~l~~~~l~~~~~--~~~~------~~l~~l~~~~n~l~~-----------~~-~~~~~~~l~~L~ls~n~l--- 319 (384)
T d2omza2 263 TKLTELKLGANQISNISP--LAGL------TALTNLELNENQLED-----------IS-PISNLKNLTYLTLYFNNI--- 319 (384)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTC------TTCSEEECCSSCCSC-----------CG-GGGGCTTCSEEECCSSCC---
T ss_pred ccCCEeeccCcccCCCCc--cccc------ccccccccccccccc-----------cc-ccchhcccCeEECCCCCC---
Confidence 777777777777765433 2222 346777777777652 21 255666777777777544
Q ss_pred cccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccch
Q 047429 280 FNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359 (466)
Q Consensus 280 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (466)
++ ++ .+..+++|++|++++|++++ ++ .|+++++|+.|+++++... ++.
T Consensus 320 ----~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~----------------------~l~-- 367 (384)
T d2omza2 320 ----SD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS----------------------DLT-- 367 (384)
T ss_dssp ----SC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC----------------------BCG--
T ss_pred ----CC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC----------------------CCh--
Confidence 22 22 35667777777777777764 33 4677777777765443211 111
Q ss_pred hhhccCCCcEEECCCC
Q 047429 360 YKITLGLPKSIDLSDN 375 (466)
Q Consensus 360 ~~~~~~~L~~L~Ls~N 375 (466)
.+.++++|+.|+|++|
T Consensus 368 ~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 368 PLANLTRITQLGLNDQ 383 (384)
T ss_dssp GGTTCTTCSEEECCCE
T ss_pred hhccCCCCCEeeCCCC
Confidence 1356777899999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.4e-23 Score=196.98 Aligned_cols=276 Identities=22% Similarity=0.250 Sum_probs=211.6
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
..+.++-++.+++.+ |..+ .+++++|+|++|.++.+++ ..+.. +++|++|++++|.+....|..|..+ +
T Consensus 11 ~~~~~~C~~~~L~~l---P~~l---~~~l~~L~Ls~N~i~~l~~--~~f~~--l~~L~~L~l~~n~~~~i~~~~f~~l-~ 79 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKV---PKDL---PPDTALLDLQNNKITEIKD--GDFKN--LKNLHTLILINNKISKISPGAFAPL-V 79 (305)
T ss_dssp ETTEEECTTSCCCSC---CCSC---CTTCCEEECCSSCCCCBCT--TTTTT--CTTCCEEECCSSCCCCBCTTTTTTC-T
T ss_pred cCCEEEecCCCCCcc---CCCC---CCCCCEEECcCCcCCCcCh--hHhhc--cccccccccccccccccchhhhhCC-C
Confidence 467888888888887 4433 3689999999999998877 56777 8999999999999998888889999 9
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC---CCc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG---IPK 194 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~ 194 (466)
.|++|++++|+++. +|. . ....++.|. ..|.+... .+ ..+.....+..++...|.... .+.
T Consensus 80 ~L~~L~l~~n~l~~-l~~-~--~~~~l~~L~~~~n~l~~l----~~-------~~~~~~~~~~~l~~~~n~~~~~~~~~~ 144 (305)
T d1xkua_ 80 KLERLYLSKNQLKE-LPE-K--MPKTLQELRVHENEITKV----RK-------SVFNGLNQMIVVELGTNPLKSSGIENG 144 (305)
T ss_dssp TCCEEECCSSCCSB-CCS-S--CCTTCCEEECCSSCCCBB----CH-------HHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred ccCEecccCCccCc-Ccc-c--hhhhhhhhhccccchhhh----hh-------hhhhccccccccccccccccccCCCcc
Confidence 99999999999984 444 2 235677777 77777664 22 456677788889988886554 345
Q ss_pred ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCC
Q 047429 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274 (466)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n 274 (466)
.+..+++|+.+++++|.++..... .+++|+.|++++|..++. .+..+..++.+++|++++|
T Consensus 145 ~~~~l~~L~~l~l~~n~l~~l~~~---------~~~~L~~L~l~~n~~~~~----------~~~~~~~~~~l~~L~~s~n 205 (305)
T d1xkua_ 145 AFQGMKKLSYIRIADTNITTIPQG---------LPPSLTELHLDGNKITKV----------DAASLKGLNNLAKLGLSFN 205 (305)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSS---------CCTTCSEEECTTSCCCEE----------CTGGGTTCTTCCEEECCSS
T ss_pred ccccccccCccccccCCccccCcc---------cCCccCEEECCCCcCCCC----------ChhHhhccccccccccccc
Confidence 788889999999999998753322 125799999999988743 3456888999999999985
Q ss_pred eeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeee
Q 047429 275 QLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWK 354 (466)
Q Consensus 275 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (466)
.+.+..+..+.++++|++|+|++|.++ .+|.+|.++++|
T Consensus 206 -------~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L--------------------------------- 244 (305)
T d1xkua_ 206 -------SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI--------------------------------- 244 (305)
T ss_dssp -------CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC---------------------------------
T ss_pred -------cccccccccccccccceeeeccccccc-ccccccccccCC---------------------------------
Confidence 445666778889999999999999998 457677766665
Q ss_pred cccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc-ccCCC
Q 047429 355 PIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS-GKIPS 419 (466)
Q Consensus 355 ~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~ 419 (466)
++|+|++|+|+ .++.... ..+..+..+++|+.|+|++|++. .++|.
T Consensus 245 -------------~~L~Ls~N~i~-~i~~~~f-----~~~~~~~~~~~L~~L~L~~N~~~~~~~~~ 291 (305)
T d1xkua_ 245 -------------QVVYLHNNNIS-AIGSNDF-----CPPGYNTKKASYSGVSLFSNPVQYWEIQP 291 (305)
T ss_dssp -------------CEEECCSSCCC-CCCTTSS-----SCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred -------------CEEECCCCccC-ccChhhc-----cCcchhcccCCCCEEECCCCcCccCcCCH
Confidence 89999999998 5543321 11334567789999999999985 34443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-22 Score=186.34 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=122.2
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc--cccccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT--SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~--~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++++|+|++|+++.+.+..|.++ ++|++|++++|.+....+. .+..+..++.+. ..+.++.. -+ .
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l----~~-------~ 99 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSV----DP-------A 99 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCC----CT-------T
T ss_pred CCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccc-cccccccccccccccccccccc----cc-------h
Confidence 45566666666655544555555 5666666666665544443 455555555544 33444433 22 4
Q ss_pred cccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 172 AFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
.|.++++|++|++++|.+..+ +..+...++|+.+++++|.+++..+..|... ++|+.|++++|++++..
T Consensus 100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~------~~L~~L~l~~N~l~~l~---- 169 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------GNLTHLFLHGNRISSVP---- 169 (284)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCCEEC----
T ss_pred hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccc------cchhhcccccCcccccc----
Confidence 566777777777777777663 3456667777777777777776666555444 45777777777776221
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+..|.++++|+.+++++| ++++..|..|..+++|++||+++|.+.+..+..|+++++|
T Consensus 170 ------~~~f~~l~~L~~l~l~~N-------~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L 227 (284)
T d1ozna_ 170 ------ERAFRGLHSLDRLLLHQN-------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (284)
T ss_dssp ------TTTTTTCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ------hhhhccccccchhhhhhc-------cccccChhHhhhhhhccccccccccccccccccccccccc
Confidence 245677778888887774 4455667777777888888888888877777777766666
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.8e-22 Score=181.40 Aligned_cols=135 Identities=27% Similarity=0.335 Sum_probs=83.2
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccc
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 253 (466)
..+++|++|++++|+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------------------- 118 (266)
T d1p9ag_ 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG----------------------------------- 118 (266)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS-----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccceeecc-----------------------------------
Confidence 344556666666666655555555555555555555554433222
Q ss_pred cccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeee
Q 047429 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEY 333 (466)
Q Consensus 254 ~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~ 333 (466)
.+..+.++++|++++|.+ .+..+..+..++.|+++++++|++++..+..|..+++|
T Consensus 119 -----~~~~l~~l~~L~l~~n~l-------~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L------------ 174 (266)
T d1p9ag_ 119 -----ALRGLGELQELYLKGNEL-------KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL------------ 174 (266)
T ss_dssp -----TTTTCTTCCEEECTTSCC-------CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC------------
T ss_pred -----cccccccccccccccccc-------ceeccccccccccchhcccccccccccCcccccccccc------------
Confidence 244555666666666433 33344555667777777777777776666666655555
Q ss_pred eeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcC
Q 047429 334 RIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l 413 (466)
++|||++|+|+ .+|.++..+++|+.|+|++|.+
T Consensus 175 ----------------------------------~~L~Ls~N~L~-------------~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 175 ----------------------------------DTLLLQENSLY-------------TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp ----------------------------------CEEECCSSCCC-------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred ----------------------------------ceeecccCCCc-------------ccChhHCCCCCCCEEEecCCCC
Confidence 77788888777 4555566677788888888765
Q ss_pred c
Q 047429 414 S 414 (466)
Q Consensus 414 ~ 414 (466)
.
T Consensus 208 ~ 208 (266)
T d1p9ag_ 208 L 208 (266)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.7e-21 Score=180.64 Aligned_cols=206 Identities=24% Similarity=0.297 Sum_probs=144.9
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEcc-CCccccCCChhhhhcCCc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLS-NNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls-~n~l~~~~~~~~~~~l~~ 144 (466)
.+++|+|++|.|+.+++ ..+.. +++|++|++++|.+....+..+... ..++.+... .+.+....+. .|+++++
T Consensus 33 ~~~~L~Ls~N~i~~i~~--~~f~~--l~~L~~L~ls~n~l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~-~~~~l~~ 106 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPA--ASFRA--CRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPA-TFHGLGR 106 (284)
T ss_dssp TCSEEECTTSCCCEECT--TTTTT--CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTT-TTTTCTT
T ss_pred CCCEEECcCCcCCCCCH--HHhhc--ccccccccccccccccccccccccc-ccccccccccccccccccch-hhccccc
Confidence 45666666666655554 34555 5566666666666655555555555 555555543 3334433333 5666666
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
|++|+ +.|.+... .+ ..+...++|+.+++++|.++.++ ..|..+++|++|++++|++++..+..|..
T Consensus 107 L~~L~l~~n~~~~~----~~-------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~ 175 (284)
T d1ozna_ 107 LHTLHLDRCGLQEL----GP-------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (284)
T ss_dssp CCEEECTTSCCCCC----CT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCEEecCCcccccc----cc-------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence 66666 55555443 22 45667788999999999999865 57888899999999999998777777766
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
+ ++|+.+++++|++++. .|..|..+++|++|++++| .+.+..+..|..+++|++|++
T Consensus 176 l------~~L~~l~l~~N~l~~i----------~~~~f~~l~~L~~L~l~~N-------~i~~~~~~~~~~~~~L~~L~l 232 (284)
T d1ozna_ 176 L------HSLDRLLLHQNRVAHV----------HPHAFRDLGRLMTLYLFAN-------NLSALPTEALAPLRALQYLRL 232 (284)
T ss_dssp C------TTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSS-------CCSCCCHHHHTTCTTCCEEEC
T ss_pred c------cccchhhhhhcccccc----------ChhHhhhhhhccccccccc-------ccccccccccccccccCEEEe
Confidence 5 6899999999999843 3567899999999999995 455666678899999999999
Q ss_pred cCCCCCCCc
Q 047429 303 SHNNISGMV 311 (466)
Q Consensus 303 s~N~l~~~~ 311 (466)
++|++...-
T Consensus 233 ~~N~l~C~C 241 (284)
T d1ozna_ 233 NDNPWVCDC 241 (284)
T ss_dssp CSSCEECSG
T ss_pred cCCCCCCCc
Confidence 999988653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.6e-20 Score=172.19 Aligned_cols=199 Identities=23% Similarity=0.190 Sum_probs=112.8
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
.+...+.++|.+++.++.. | ..+. +++++|+|++|.++.+ +...+..+++|++|+|++|.++.++. ++.
T Consensus 7 ~~~~~~~~v~C~~~~L~~i-P-~~lp--~~l~~L~Ls~N~i~~l---~~~~f~~l~~L~~L~L~~N~l~~l~~----~~~ 75 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTAL-P-PDLP--KDTTILHLSENLLYTF---SLATLMPYTRLTQLNLDRAELTKLQV----DGT 75 (266)
T ss_dssp ECSTTCCEEECTTSCCSSC-C-SCCC--TTCCEEECTTSCCSEE---EGGGGTTCTTCCEEECTTSCCCEEEC----CSC
T ss_pred cccCCCeEEEccCCCCCee-C-cCcC--cCCCEEECcCCcCCCc---CHHHhhcccccccccccccccccccc----ccc
Confidence 3445555667766666643 3 2221 3566777777766665 32333336667777777666664322 233
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCc
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|+++. .+..+..+ ++|+.|++++|.+....+
T Consensus 76 --l~~L~~L~Ls~N~l~~-~~~~~~~l-~~L~~L~l~~~~~~~~~~---------------------------------- 117 (266)
T d1p9ag_ 76 --LPVLGTLDLSHNQLQS-LPLLGQTL-PALTVLDVSFNRLTSLPL---------------------------------- 117 (266)
T ss_dssp --CTTCCEEECCSSCCSS-CCCCTTTC-TTCCEEECCSSCCCCCCS----------------------------------
T ss_pred --cccccccccccccccc-cccccccc-cccccccccccccceeec----------------------------------
Confidence 5666666666666653 24445555 666666666665543222
Q ss_pred cccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+..+.++++|++++|.+..++. .+..+++++.+++++|++++..+..+..+ ++|++|+|++|+++
T Consensus 118 -~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l------~~L~~L~Ls~N~L~----- 185 (266)
T d1p9ag_ 118 -GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL------ENLDTLLLQENSLY----- 185 (266)
T ss_dssp -STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC------TTCCEEECCSSCCC-----
T ss_pred -cccccccccccccccccccceeccccccccccchhcccccccccccCccccccc------cccceeecccCCCc-----
Confidence 233445566666666666666433 44556666666666666665555544443 45666666666666
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCe
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
.+|..+..+++|+.|+|++|.
T Consensus 186 ------~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 186 ------TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp ------CCCTTTTTTCCCSEEECCSCC
T ss_pred ------ccChhHCCCCCCCEEEecCCC
Confidence 555555555566666666543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=5.5e-18 Score=161.15 Aligned_cols=272 Identities=21% Similarity=0.247 Sum_probs=164.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.++++|||+++.++.. | . ..++|++|++++|+++.++ . .+.+|+.|++++|.++.+... .
T Consensus 38 ~~l~~LdLs~~~L~~l-p-~---~~~~L~~L~Ls~N~l~~lp---~----~~~~L~~L~l~~n~l~~l~~l--------p 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSL-P-E---LPPHLESLVASCNSLTELP---E----LPQSLKSLLVDNNNLKALSDL--------P 97 (353)
T ss_dssp HTCSEEECTTSCCSCC-C-S---CCTTCSEEECCSSCCSSCC---C----CCTTCCEEECCSSCCSCCCSC--------C
T ss_pred cCCCEEEeCCCCCCCC-C-C---CCCCCCEEECCCCCCcccc---c----chhhhhhhhhhhcccchhhhh--------c
Confidence 4688999999998853 4 2 3578999999999998773 1 257899999999988876431 3
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
+.|++|++++|.+... |. +..+ ++|++|++++|.+... +. . ...+..+. ..+..... .
T Consensus 98 ~~L~~L~L~~n~l~~l-p~-~~~l-~~L~~L~l~~~~~~~~-~~-~---~~~l~~l~~~~~~~~~~-------------~ 156 (353)
T d1jl5a_ 98 PLLEYLGVSNNQLEKL-PE-LQNS-SFLKIIDVDNNSLKKL-PD-L---PPSLEFIAAGNNQLEEL-------------P 156 (353)
T ss_dssp TTCCEEECCSSCCSSC-CC-CTTC-TTCCEEECCSSCCSCC-CC-C---CTTCCEEECCSSCCSSC-------------C
T ss_pred cccccccccccccccc-cc-hhhh-ccceeecccccccccc-cc-c---cccccchhhcccccccc-------------c
Confidence 4699999999999854 43 4667 8999999999988643 22 2 23333343 22222221 2
Q ss_pred cccCCCccCEEecCCCcCCCCCc-------------------ccCCCCCcCEEEeeCCcCCCccchhhhhcccccccccc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPK-------------------SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~-------------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 232 (466)
.+..++.++.++++.|....++. .+..++.|+.+++++|..... +... .++
T Consensus 157 ~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~---------~~l 226 (353)
T d1jl5a_ 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PDLP---------PSL 226 (353)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CSCC---------TTC
T ss_pred cccccccceeccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc---------ccc
Confidence 34556666667766665544221 233455666666666655422 2111 235
Q ss_pred ceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-------------eeecccccccCCCCCCCCCCccE
Q 047429 233 QSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL-------------WLRFNHINGSATPKLCSSPMLQV 299 (466)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l-------------~l~~n~~~~~~~~~~~~l~~L~~ 299 (466)
..+.+.++.+.... . ....+...++..+.+ .+..+.+ +.....+++|++
T Consensus 227 ~~~~~~~~~~~~~~-----------~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~L~~ 288 (353)
T d1jl5a_ 227 EALNVRDNYLTDLP-----------E---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI----RSLCDLPPSLEE 288 (353)
T ss_dssp CEEECCSSCCSCCC-----------C---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC----SEECCCCTTCCE
T ss_pred cccccccccccccc-----------c---ccccccccccccccccccccccchhcccccccCcc----ccccccCCCCCE
Confidence 55555555554211 1 112222233222211 0111111 122234567888
Q ss_pred EEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCc
Q 047429 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSG 379 (466)
Q Consensus 300 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 379 (466)
|+|++|+++ .+|.. +++|+.|+|++|+|+
T Consensus 289 L~Ls~N~l~-~lp~~-------------------------------------------------~~~L~~L~L~~N~L~- 317 (353)
T d1jl5a_ 289 LNVSNNKLI-ELPAL-------------------------------------------------PPRLERLIASFNHLA- 317 (353)
T ss_dssp EECCSSCCS-CCCCC-------------------------------------------------CTTCCEEECCSSCCS-
T ss_pred EECCCCccC-ccccc-------------------------------------------------cCCCCEEECCCCcCC-
Confidence 888888877 34422 344589999999998
Q ss_pred CCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 380 KIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 380 ~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
.+|.. +++|++|++++|+++ .+|+.
T Consensus 318 ------------~l~~~---~~~L~~L~L~~N~L~-~lp~~ 342 (353)
T d1jl5a_ 318 ------------EVPEL---PQNLKQLHVEYNPLR-EFPDI 342 (353)
T ss_dssp ------------CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred ------------ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence 44432 457999999999998 77764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=6e-19 Score=157.55 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=144.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.++..++++.+++++.. .++.+.+|+.|++.+|+++.+. .+.. +++|++|++++|.+++..+ +.. +
T Consensus 19 ~~~~~~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~~l~----~l~~-l~~L~~L~ls~n~i~~~~~----l~~--l 84 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIE----GVQY-LNNLIGLELKDNQITDLAP----LKN--L 84 (227)
T ss_dssp HHHHHHHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCCCT----TGGG-CTTCCEEECCSSCCCCCGG----GTT--C
T ss_pred HHHHHHHhCCCCcCCcC---CHHHcCCcCEEECCCCCCCcch----hHhc-CCCCcEeecCCceeecccc----ccc--c
Confidence 45566788888887654 3566788999999999988762 3555 9999999999998887643 455 8
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++++++++++|.++.. ..+.++ ++|+.++++++...+.. .+...+.++.+. ..+.+... .
T Consensus 85 ~~l~~l~~~~n~~~~i--~~l~~l-~~L~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~-------------~ 145 (227)
T d1h6ua2 85 TKITELELSGNPLKNV--SAIAGL-QSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNI-------------S 145 (227)
T ss_dssp CSCCEEECCSCCCSCC--GGGTTC-TTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCC-------------G
T ss_pred cccccccccccccccc--cccccc-ccccccccccccccccc---hhccccchhhhhchhhhhchh-------------h
Confidence 8999999999988753 346777 88999999988776322 345556666666 55555443 3
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+..+++|++|++++|.+...+ .+.++++|++|++++|++++. +. +..+ ++|++|++++|+++
T Consensus 146 ~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l-~~-l~~l------~~L~~L~Ls~N~lt-------- 208 (227)
T d1h6ua2 146 PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI-SP-LASL------PNLIEVHLKNNQIS-------- 208 (227)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGC------TTCCEEECTTSCCC--------
T ss_pred hhccccccccccccccccccch-hhcccccceecccCCCccCCC-hh-hcCC------CCCCEEECcCCcCC--------
Confidence 4566777888888888776643 366777888888888877653 22 3333 46777777777776
Q ss_pred cccccCcccCCCCCCcEEeCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLE 272 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~ 272 (466)
.++. +.++++|++|+++
T Consensus 209 ---~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 209 ---DVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp ---BCGG-GTTCTTCCEEEEE
T ss_pred ---CCcc-cccCCCCCEEEee
Confidence 3332 6667777777765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=5.4e-18 Score=151.21 Aligned_cols=195 Identities=18% Similarity=0.306 Sum_probs=158.7
Q ss_pred ccccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc
Q 047429 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY 82 (466)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 82 (466)
+++...+..+++|+.|++.+|.++.. ..+..+++|++|++++|.++... .+.. +++|+++++++|.++.+.
T Consensus 31 ~~d~~~~~~l~~L~~L~l~~~~i~~l---~~l~~l~~L~~L~ls~n~i~~~~----~l~~-l~~l~~l~~~~n~~~~i~- 101 (227)
T d1h6ua2 31 VTDTVTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQITDLA----PLKN-LTKITELELSGNPLKNVS- 101 (227)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCG----GGTT-CCSCCEEECCSCCCSCCG-
T ss_pred cCCcCCHHHcCCcCEEECCCCCCCcc---hhHhcCCCCcEeecCCceeeccc----cccc-cccccccccccccccccc-
Confidence 44555667889999999999999865 34889999999999999998863 2445 999999999999988653
Q ss_pred cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
.+.. +++|++++++++...+.. .+... +.++.+.++++.+.... .+..+++|+.|. ..|.++..
T Consensus 102 ---~l~~--l~~L~~l~l~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~---- 166 (227)
T d1h6ua2 102 ---AIAG--LQSIKTLDLTSTQITDVT--PLAGL-SNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDL---- 166 (227)
T ss_dssp ---GGTT--CTTCCEEECTTSCCCCCG--GGTTC-TTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC----
T ss_pred ---cccc--cccccccccccccccccc--hhccc-cchhhhhchhhhhchhh---hhccccccccccccccccccc----
Confidence 4556 899999999999887543 34455 78999999999886432 567889999999 88887764
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
..+.++++|++|++++|++++++. +.++++|++|++++|++++..+ +..+ ++|+.|++++
T Consensus 167 ---------~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l------~~L~~L~lsn 226 (227)
T d1h6ua2 167 ---------TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANT------SNLFIVTLTN 226 (227)
T ss_dssp ---------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTC------TTCCEEEEEE
T ss_pred ---------hhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccC------CCCCEEEeeC
Confidence 457889999999999999998754 7899999999999999986543 3333 6799999864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.1e-20 Score=180.32 Aligned_cols=278 Identities=23% Similarity=0.238 Sum_probs=165.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc-
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN- 89 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~- 89 (466)
.+|++||+++|++++......+..++++++|+|++|+++... .+...+.. +++|++|||++|.++.... ..+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~-~~~L~~LdLs~N~i~~~~~--~~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGV--HCVLQG 78 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHH--HHHHHT
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhc-CCCCCEEECcCCcCChHHH--HHHHHH
Confidence 368999999999998776567888999999999999987541 11223344 8999999999998864321 11111
Q ss_pred --CCCCCccEEEcCCCCCCchh----hhhhhcccCCCcEEEccCCccccCCChhhh------------------------
Q 047429 90 --SSSSSLTHLHLSLCGLSNSA----YHCLSHISKSLVYLDLSNNQLQGPTPDYAF------------------------ 139 (466)
Q Consensus 90 --~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~------------------------ 139 (466)
....+|++|++++|.++... +..+... ++|++|++++|.+...... .+
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~ 156 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCSLSAA 156 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhcc-ccccccccccccchhhhhh-hhhhcccccccccccccccccccchh
Confidence 11357999999999997543 4455666 8999999999987532111 11
Q ss_pred ---------hcCCcccccc-ccccccccc-------------------cc--CCC-ccccCccccccCCCccCEEecCCC
Q 047429 140 ---------RNMTSLASLT-SLNYITGIS-------------------KC--SLP-ITLVRPKYAFSNVTSLMDLDLSKN 187 (466)
Q Consensus 140 ---------~~l~~L~~L~-~~n~l~~~~-------------------~~--~l~-~~~~~~~~~l~~l~~L~~L~Ls~n 187 (466)
.....++.+. +.+.....+ .. ... .........+...+.++.+++++|
T Consensus 157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n 236 (460)
T d1z7xw1 157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236 (460)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence 0111122222 111110000 00 000 000001112344567888888888
Q ss_pred cCCC------CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc-c
Q 047429 188 QITG------IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ-F 260 (466)
Q Consensus 188 ~l~~------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~-~ 260 (466)
.+.. .+........++.+++++|.+.......+...+. ..+.++.+++++|.+++.... .+... .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~--~~~~l~~l~l~~n~i~~~~~~------~l~~~l~ 308 (460)
T d1z7xw1 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAGNELGDEGAR------LLCETLL 308 (460)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTTCCCHHHHHH------HHHHHHT
T ss_pred cccccccchhhccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc------hhhcccc
Confidence 7643 2234455678999999999887544332222211 125689999999988632110 11111 2
Q ss_pred CCCCCCcEEeCCCCeeeeeccccccc----CCCCCCCCCCccEEEccCCCCCCC
Q 047429 261 CRPSSLVELDLESNQLWLRFNHINGS----ATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 261 ~~l~~L~~L~L~~n~l~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.....|+.+++++|.+ +.. +...+...++|++|+|++|.+++.
T Consensus 309 ~~~~~L~~l~l~~~~l-------~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~ 355 (460)
T d1z7xw1 309 EPGCQLESLWVKSCSF-------TAACCSHFSSVLAQNRFLLELQISNNRLEDA 355 (460)
T ss_dssp STTCCCCEEECTTSCC-------BGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred ccccccccccccccch-------hhhhhhhcccccccccchhhhheeeecccCc
Confidence 2346789999998654 222 122334567899999999998743
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=3.4e-17 Score=143.97 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=132.8
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
++...++..+.+++... ...+.+|++|++++|.++... ++.. +++|++|++++|.+++..+ +.. ++
T Consensus 25 ~~i~~~l~~~~~~~~~~---~~~L~~L~~L~l~~~~i~~l~----~l~~-l~~L~~L~L~~n~i~~l~~----~~~--l~ 90 (210)
T d1h6ta2 25 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ----GIQY-LPNVTKLFLNGNKLTDIKP----LAN--LK 90 (210)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT----TGGG-CTTCCEEECCSSCCCCCGG----GTT--CT
T ss_pred HHHHHHhCcCccCCccC---HHHhcCccEEECcCCCCCCch----hHhh-CCCCCEEeCCCccccCccc----ccc--Cc
Confidence 33445666666665543 234567888888888887763 3445 8888888888888887643 345 78
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|+++.. + .+..+ ++|+.|++++|.+.. . . .+..++.++.++ +.|.+++. ..
T Consensus 91 ~L~~L~l~~n~i~~l-~-~l~~l-~~L~~L~l~~~~~~~-~-~-~l~~l~~l~~l~~~~n~l~~~-------------~~ 151 (210)
T d1h6ta2 91 NLGWLFLDENKVKDL-S-SLKDL-KKLKSLSLEHNGISD-I-N-GLVHLPQLESLYLGNNKITDI-------------TV 151 (210)
T ss_dssp TCCEEECCSSCCCCG-G-GGTTC-TTCCEEECTTSCCCC-C-G-GGGGCTTCCEEECCSSCCCCC-------------GG
T ss_pred ccccccccccccccc-c-ccccc-ccccccccccccccc-c-c-ccccccccccccccccccccc-------------cc
Confidence 888888888888753 2 46677 888888888888753 2 3 577788888888 77777654 35
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
+..+++|+++++++|.+++++. +.++++|++|++++|++++ ++. +..+ ++|++|+|++
T Consensus 152 ~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~-l~~-l~~l------~~L~~L~Ls~ 209 (210)
T d1h6ta2 152 LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGL------KNLDVLELFS 209 (210)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG-GTTC------TTCSEEEEEE
T ss_pred cccccccccccccccccccccc-ccCCCCCCEEECCCCCCCC-Chh-hcCC------CCCCEEEccC
Confidence 6678889999999998887654 7788899999999998874 332 4333 5788888864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=4.4e-17 Score=142.04 Aligned_cols=170 Identities=25% Similarity=0.344 Sum_probs=126.9
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
++++...+++.+.+++... ...+.++++|++++|+++.+. ++.. +++|++|++++|++++..+ +..
T Consensus 17 l~~~i~~~l~~~~~~~~~~---~~~l~~l~~L~l~~~~i~~l~----~l~~-l~nL~~L~Ls~N~l~~~~~----l~~-- 82 (199)
T d2omxa2 17 LAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSID----GVEY-LNNLTQINFSNNQLTDITP----LKN-- 82 (199)
T ss_dssp HHHHHHHHTTCSSTTSEEC---HHHHTTCCEEECTTSCCCCCT----TGGG-CTTCCEEECCSSCCCCCGG----GTT--
T ss_pred HHHHHHHHhCCCCCCCccC---HHHhcCCCEEECCCCCCCCcc----cccc-CCCcCcCccccccccCccc----ccC--
Confidence 3444456677777776533 345678888888888887763 3445 8888888888888877543 455
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|++++|.+.... .+..+ +.|+.|++++|..... . .+..+++|+.|+ +.|.+...
T Consensus 83 l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~~~~~~~--~-~~~~l~~L~~L~l~~n~l~~~------------- 143 (199)
T d2omxa2 83 LTKLVDILMNNNQIADIT--PLANL-TNLTGLTLFNNQITDI--D-PLKNLTNLNRLELSSNTISDI------------- 143 (199)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTC-TTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCC-------------
T ss_pred Cccccccccccccccccc--ccccc-cccccccccccccccc--c-ccchhhhhHHhhhhhhhhccc-------------
Confidence 888888888888877543 36677 8888888888877632 2 567788888888 88877654
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAK 215 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~ 215 (466)
..+..+++|+.|++++|.+++++ .+.++++|++|++++|++++.
T Consensus 144 ~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i 187 (199)
T d2omxa2 144 SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDI 187 (199)
T ss_dssp GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred ccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCC
Confidence 35778889999999999988875 478889999999999998753
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2e-17 Score=148.95 Aligned_cols=216 Identities=18% Similarity=0.180 Sum_probs=133.8
Q ss_pred CEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc
Q 047429 68 RELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147 (466)
Q Consensus 68 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 147 (466)
++++.++..++.++.. + .+++++|++++|.++...+..|.++ ++|++|++++|.+...++...|.+++.+++
T Consensus 11 ~~i~c~~~~l~~iP~~---l----~~~l~~L~Ls~n~i~~l~~~~f~~l-~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~ 82 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSD---L----PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHE 82 (242)
T ss_dssp SEEEEESCSCSSCCSC---S----CSCCSEEEEESCCCCEECTTTTTTC-TTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred CEEEEeCCCCCCcCCC---C----CCCCCEEECcCCcCCccChhHhhcc-chhhhhhhccccccceeecccccccccccc
Confidence 4555555555544431 1 2356666666666665444556666 666666666666554333325555666666
Q ss_pred cc--cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCCCccchhhhhc
Q 047429 148 LT--SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILTAKLPELFLNF 223 (466)
Q Consensus 148 L~--~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 223 (466)
+. ..+.+... .+ ..|.++++|+++++++|.+...+. .+..+..+..+...++.+....+..+.+.
T Consensus 83 l~~~~~n~l~~~----~~-------~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~ 151 (242)
T d1xwdc1 83 IRIEKANNLLYI----NP-------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 151 (242)
T ss_dssp EEEECCTTCCEE----CT-------TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred cccccccccccc----cc-------ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc
Confidence 55 23444443 22 467778888888888888877432 33445566666666777765555444332
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEe-CCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELD-LESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~-L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
+..++.+++++|+++ .++.......+++.+. +++ |+++...+..|.++++|++|+|
T Consensus 152 -----~~~l~~L~l~~n~l~-----------~i~~~~~~~~~l~~~~~l~~-------n~l~~l~~~~f~~l~~L~~L~L 208 (242)
T d1xwdc1 152 -----SFESVILWLNKNGIQ-----------EIHNCAFNGTQLDELNLSDN-------NNLEELPNDVFHGASGPVILDI 208 (242)
T ss_dssp -----BSSCEEEECCSSCCC-----------EECTTTTTTCCEEEEECTTC-------TTCCCCCTTTTTTSCCCSEEEC
T ss_pred -----cccceeeeccccccc-----------ccccccccchhhhccccccc-------cccccccHHHhcCCCCCCEEEC
Confidence 135788888888887 5555555556665554 555 3444333456788899999999
Q ss_pred cCCCCCCCchhhhhhhhhhhhcC
Q 047429 303 SHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 303 s~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
++|+++...+..|.+++.|+.++
T Consensus 209 s~N~l~~l~~~~~~~l~~L~~l~ 231 (242)
T d1xwdc1 209 SRTRIHSLPSYGLENLKKLRARS 231 (242)
T ss_dssp TTSCCCCCCSSSCTTCCEEESSS
T ss_pred CCCcCCccCHHHHcCCcccccCc
Confidence 99999877677788888887665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.71 E-value=1.1e-15 Score=145.08 Aligned_cols=250 Identities=23% Similarity=0.250 Sum_probs=153.9
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
+++|++|++++|+++.. | . ...+|++|++++|+++.+..+ .+.|++|++++|.+..++. ++.
T Consensus 57 ~~~L~~L~Ls~N~l~~l-p-~---~~~~L~~L~l~~n~l~~l~~l-------p~~L~~L~L~~n~l~~lp~----~~~-- 118 (353)
T d1jl5a_ 57 PPHLESLVASCNSLTEL-P-E---LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE----LQN-- 118 (353)
T ss_dssp CTTCSEEECCSSCCSSC-C-C---CCTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSSCCC----CTT--
T ss_pred CCCCCEEECCCCCCccc-c-c---chhhhhhhhhhhcccchhhhh-------ccccccccccccccccccc----hhh--
Confidence 47899999999999854 4 2 356899999999999887421 2479999999999987653 345
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccc----
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITL---- 166 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~---- 166 (466)
+++|++|++++|.+.... .. . ..+..+.+..+..... . .+..++.++.+. ..+..............
T Consensus 119 l~~L~~L~l~~~~~~~~~-~~---~-~~l~~l~~~~~~~~~~--~-~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~ 190 (353)
T d1jl5a_ 119 SSFLKIIDVDNNSLKKLP-DL---P-PSLEFIAAGNNQLEEL--P-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 190 (353)
T ss_dssp CTTCCEEECCSSCCSCCC-CC---C-TTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred hccceeeccccccccccc-cc---c-ccccchhhcccccccc--c-cccccccceecccccccccccccccccccccccc
Confidence 889999999999886432 21 1 4556666665544321 1 334455555555 44433321100000000
Q ss_pred ---cCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 167 ---VRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 167 ---~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
......+..++.|+.+++++|....++. ...++..+.+..+.+...... . ..+...++..+.+.
T Consensus 191 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~~~-~---------~~l~~~~~~~~~~~ 257 (353)
T d1jl5a_ 191 NNILEELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPEL-P---------QSLTFLDVSENIFS 257 (353)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCC-C---------TTCCEEECCSSCCS
T ss_pred ccccccccccccccccccccccccccccccc---ccccccccccccccccccccc-c---------cccccccccccccc
Confidence 0111245678899999999998877654 345688888888887643221 1 23444444444333
Q ss_pred ccCC--CC----cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 244 GSLP--GV----TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 244 ~~~~--~~----~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
+... .. ......++.....+++|++|++++|+| ..+|.. +++|+.|+|++|+|+ .+|
T Consensus 258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l--------~~lp~~---~~~L~~L~L~~N~L~-~l~ 320 (353)
T d1jl5a_ 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL--------IELPAL---PPRLERLIASFNHLA-EVP 320 (353)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC--------SCCCCC---CTTCCEEECCSSCCS-CCC
T ss_pred ccccccchhcccccccCccccccccCCCCCEEECCCCcc--------Cccccc---cCCCCEEECCCCcCC-ccc
Confidence 2110 00 000112222234467999999999766 355643 578999999999998 444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=3.2e-17 Score=144.18 Aligned_cols=146 Identities=25% Similarity=0.366 Sum_probs=86.9
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+..+++|++|++++|.+++++ .++.+++|++|++++|++++. +. +..+ ++|+.|++++|.+.
T Consensus 64 l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l-~~-l~~l------~~L~~L~l~~~~~~--------- 125 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SS-LKDL------KKLKSLSLEHNGIS--------- 125 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCG-GG-GTTC------TTCCEEECTTSCCC---------
T ss_pred HhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccc-cc-cccc------cccccccccccccc---------
Confidence 445566666666666666654 245666666666666666532 21 2222 45666666666654
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceee
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE 332 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~ 332 (466)
.++ .+..+++++.+++++|.+ ..+..+..+++|+++++++|++++..+ +++++
T Consensus 126 --~~~-~l~~l~~l~~l~~~~n~l---------~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~------------- 178 (210)
T d1h6ta2 126 --DIN-GLVHLPQLESLYLGNNKI---------TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT------------- 178 (210)
T ss_dssp --CCG-GGGGCTTCCEEECCSSCC---------CCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT-------------
T ss_pred --ccc-cccccccccccccccccc---------ccccccccccccccccccccccccccc--ccCCC-------------
Confidence 222 355566677777766544 223345566777777777777764322 44433
Q ss_pred eeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccC
Q 047429 333 YRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSN 410 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~ 410 (466)
+|+.|+|++|+++ .+| ++.++++|++|+|++
T Consensus 179 ---------------------------------~L~~L~Ls~N~i~-------------~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 179 ---------------------------------KLQNLYLSKNHIS-------------DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ---------------------------------TCCEEECCSSCCC-------------BCG-GGTTCTTCSEEEEEE
T ss_pred ---------------------------------CCCEEECCCCCCC-------------CCh-hhcCCCCCCEEEccC
Confidence 3377888888877 333 377788888888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=7e-17 Score=140.70 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=100.1
Q ss_pred EccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEE
Q 047429 44 SLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYL 123 (466)
Q Consensus 44 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L 123 (466)
.++.+.+++.. .... ++++++|++++|.++.+. .+.. +++|++|++++|.+++..+ +.++ ++|++|
T Consensus 24 ~l~~~~~~~~~----~~~~-l~~l~~L~l~~~~i~~l~----~l~~--l~nL~~L~Ls~N~l~~~~~--l~~l-~~L~~L 89 (199)
T d2omxa2 24 VLGKTNVTDTV----SQTD-LDQVTTLQADRLGIKSID----GVEY--LNNLTQINFSNNQLTDITP--LKNL-TKLVDI 89 (199)
T ss_dssp HTTCSSTTSEE----CHHH-HTTCCEEECTTSCCCCCT----TGGG--CTTCCEEECCSSCCCCCGG--GTTC-TTCCEE
T ss_pred HhCCCCCCCcc----CHHH-hcCCCEEECCCCCCCCcc----cccc--CCCcCcCccccccccCccc--ccCC-cccccc
Confidence 45555555542 1123 567777777777766543 2344 6777777777777765433 5666 777777
Q ss_pred EccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCc
Q 047429 124 DLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCL 202 (466)
Q Consensus 124 ~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 202 (466)
++++|.+.. .+ .+++++.|+.|+ +.+..... ..+..+++|+.|++++|.+..++ .+..+++|
T Consensus 90 ~l~~n~~~~-~~--~l~~l~~L~~L~l~~~~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L 152 (199)
T d2omxa2 90 LMNNNQIAD-IT--PLANLTNLTGLTLFNNQITDI-------------DPLKNLTNLNRLELSSNTISDIS-ALSGLTSL 152 (199)
T ss_dssp ECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCC-------------GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred ccccccccc-cc--ccccccccccccccccccccc-------------cccchhhhhHHhhhhhhhhcccc-cccccccc
Confidence 777776652 22 456677777777 66655543 34566677777777777776654 46667777
Q ss_pred CEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 203 KTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 203 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
+.|++.+|++++..+ +..+ ++|++|++++|++++
T Consensus 153 ~~L~l~~n~l~~l~~--l~~l------~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 153 QQLNFSSNQVTDLKP--LANL------TTLERLDISSNKVSD 186 (199)
T ss_dssp SEEECCSSCCCCCGG--GTTC------TTCCEEECCSSCCCC
T ss_pred cccccccccccCCcc--ccCC------CCCCEEECCCCCCCC
Confidence 777777777764332 2222 467777777777764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=9.8e-17 Score=144.35 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=73.5
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
+.++.++..++.. | ..+ .+++++|++++|.++.+ +...+.++++|++|++++|.+....+. ..+.. ++.+
T Consensus 11 ~~i~c~~~~l~~i-P-~~l--~~~l~~L~Ls~n~i~~l---~~~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~~--l~~l 80 (242)
T d1xwdc1 11 RVFLCQESKVTEI-P-SDL--PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSN--LPKL 80 (242)
T ss_dssp SEEEEESCSCSSC-C-SCS--CSCCSEEEEESCCCCEE---CTTTTTTCTTCCEEEEESCTTCCEECS-SSEES--CTTC
T ss_pred CEEEEeCCCCCCc-C-CCC--CCCCCEEECcCCcCCcc---ChhHhhccchhhhhhhccccccceeec-ccccc--cccc
Confidence 5677777777643 3 222 24688888888888776 334444488888888888877654331 45666 7788
Q ss_pred cEEEcCC-CCCCchhhhhhhcccCCCcEEEccCCcccc
Q 047429 96 THLHLSL-CGLSNSAYHCLSHISKSLVYLDLSNNQLQG 132 (466)
Q Consensus 96 ~~L~Ls~-n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~ 132 (466)
+++.+.. +.+....+..|..+ ++|++|++++|.+..
T Consensus 81 ~~l~~~~~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~~ 117 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKH 117 (242)
T ss_dssp CEEEEECCTTCCEECTTSEECC-TTCCEEEEESCCCCS
T ss_pred cccccccccccccccccccccc-ccccccccchhhhcc
Confidence 8887754 56776667777777 888888888888764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.6e-18 Score=165.91 Aligned_cols=337 Identities=18% Similarity=0.166 Sum_probs=202.4
Q ss_pred cccCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCccchHHHHhc----CCCCCCEEEcCCCCCCCC
Q 047429 8 FHISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREATDWLQVVIT----GLPSLRELDLSSSAPPKI 80 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~~ 80 (466)
.+..++++++|+|++|.++.... ...+..+++|++|+|++|.++... ...+.. ...+|++|++++|.+++.
T Consensus 22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~it~~ 99 (460)
T d1z7xw1 22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGA 99 (460)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH--HHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH--HHHHHHHHhcCCCCCCEEECCCCCcccc
Confidence 35678899999999998875433 145678899999999999886431 122222 135799999999988765
Q ss_pred Ccc--ccccccCCCCCccEEEcCCCCCCchhhhhh---------------------------------hcccCCCcEEEc
Q 047429 81 NYR--SHSLVNSSSSSLTHLHLSLCGLSNSAYHCL---------------------------------SHISKSLVYLDL 125 (466)
Q Consensus 81 ~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---------------------------------~~l~~~L~~L~L 125 (466)
... ...+.. +++|++|++++|.++......+ ... ..++.+++
T Consensus 100 ~~~~l~~~l~~--~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l 176 (460)
T d1z7xw1 100 GCGVLSSTLRT--LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTV 176 (460)
T ss_dssp GHHHHHHHTTS--CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEEC
T ss_pred ccccccchhhc--cccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccc-cccccccc
Confidence 321 023444 7899999999998753211111 111 34566666
Q ss_pred cCCcccc-----------------------------CCCh---hhhhcCCcccccc-ccccccccccc-CCCccccCccc
Q 047429 126 SNNQLQG-----------------------------PTPD---YAFRNMTSLASLT-SLNYITGISKC-SLPITLVRPKY 171 (466)
Q Consensus 126 s~n~l~~-----------------------------~~~~---~~~~~l~~L~~L~-~~n~l~~~~~~-~l~~~~~~~~~ 171 (466)
+++.... .... ..+.....++.+. ..+.+...... ... .
T Consensus 177 s~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~-------~ 249 (460)
T d1z7xw1 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP-------G 249 (460)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-------H
T ss_pred cccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhc-------c
Confidence 5544321 0000 0122334455555 44443221100 011 3
Q ss_pred cccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccC
Q 047429 172 AFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSL 246 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (466)
.......++.+++++|.+.. ....+...+.++.+++++|.++......+...+.. ....|+.+++++|.++...
T Consensus 250 ~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~-~~~~L~~l~l~~~~l~~~~ 328 (460)
T d1z7xw1 250 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE-PGCQLESLWVKSCSFTAAC 328 (460)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS-TTCCCCEEECTTSCCBGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccc-cccccccccccccchhhhh
Confidence 34556789999999999876 22345668899999999999875444333322111 1136999999999887432
Q ss_pred CCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC-CCCCccEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 247 PGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC-SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 247 ~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
.. .+...+..+++|++|+|++|.+.-.+ ...+...+. ..+.|++|+|++|.|+......+.. .+
T Consensus 329 ~~------~l~~~~~~~~~L~~L~Ls~N~i~~~g---~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l---- 393 (460)
T d1z7xw1 329 CS------HFSSVLAQNRFLLELQISNNRLEDAG---VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--TL---- 393 (460)
T ss_dssp HH------HHHHHHHHCSSCCEEECCSSBCHHHH---HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HH----
T ss_pred hh------hcccccccccchhhhheeeecccCcc---cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH--HH----
Confidence 11 22334556778999999997651000 001223332 4678999999999997532222221 01
Q ss_pred CCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCccccc-CCCCCC
Q 047429 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFS-QLSHLG 404 (466)
Q Consensus 326 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~-~l~~L~ 404 (466)
...+.|++|||++|+++.+....+. .++. +...|+
T Consensus 394 ------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~--------~~l~~~~~~L~ 429 (460)
T d1z7xw1 394 ------------------------------------LANHSLRELDLSNNCLGDAGILQLV--------ESVRQPGCLLE 429 (460)
T ss_dssp ------------------------------------HHCCCCCEEECCSSSCCHHHHHHHH--------HHHTSTTCCCC
T ss_pred ------------------------------------hcCCCCCEEECCCCcCCHHHHHHHH--------HHHHhCCCccC
Confidence 2345568999999998853333322 1233 334799
Q ss_pred eeeccCCcCccc
Q 047429 405 VVNLSNNNFSGK 416 (466)
Q Consensus 405 ~L~Ls~N~l~~~ 416 (466)
.|++++|.+...
T Consensus 430 ~l~l~~~~~~~~ 441 (460)
T d1z7xw1 430 QLVLYDIYWSEE 441 (460)
T ss_dssp EEECTTCCCCHH
T ss_pred EEECCCCCCCHH
Confidence 999999988743
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=3.4e-15 Score=128.99 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=58.1
Q ss_pred CccCEEecCCCcCCC-C-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccc
Q 047429 177 TSLMDLDLSKNQITG-I-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDG 254 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~-~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 254 (466)
+++++|+|++|.|+. + +..|.++++|++|++++|.+....+..+... ++|++|++++|+++
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~------~~L~~L~Ls~N~l~----------- 91 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA------SHIQELQLGENKIK----------- 91 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC------TTCCEEECCSCCCC-----------
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc------cccceeeecccccc-----------
Confidence 345566666666654 2 2344555666666666666555555544443 44566666666555
Q ss_pred ccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 255 TFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 255 ~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
.+| .+|.++++|++|+|++| ++++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~~~F~~l~~L~~L~L~~N-------~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 92 EISNKMFLGLHQLKTLNLYDN-------QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSS-------CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccCHHHHhCCCcccccccCCc-------cccccCHHHhcCCccccccccccccccc
Confidence 222 23555566666666553 3333344455555566666666665543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.60 E-value=1e-16 Score=152.19 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=77.6
Q ss_pred cccCCCccCEEecCCCcCCC------CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 172 AFSNVTSLMDLDLSKNQITG------IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+...+.|++|++++|.++. +...+..+++|++|++++|.++......+...+..+ ++|++|++++|.+++.
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~--~~L~~L~Ls~n~i~~~ 258 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW--PNLRELGLNDCLLSAR 258 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC--TTCCEEECTTCCCCHH
T ss_pred hhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc--ccchhhhhhcCccCch
Confidence 44556677777777777654 223456677777788877776543333222222221 4577788887777632
Q ss_pred CCCCcccccccCcccC--CCCCCcEEeCCCCeeeeecccccccCCCCCC-CCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 246 LPGVTELDGTFPKQFC--RPSSLVELDLESNQLWLRFNHINGSATPKLC-SSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 246 ~~~~~~l~~~lp~~~~--~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
... .+-..+. ..+.|++|++++|.|...+ + ..+...+. +++.|++|+|++|.+... ...+..+..+
T Consensus 259 g~~------~l~~~l~~~~~~~L~~L~ls~N~i~~~~--~-~~l~~~l~~~~~~L~~L~l~~N~~~~~-~~~~~~l~~~ 327 (344)
T d2ca6a1 259 GAA------AVVDAFSKLENIGLQTLRLQYNEIELDA--V-RTLKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREV 327 (344)
T ss_dssp HHH------HHHHHHHTCSSCCCCEEECCSSCCBHHH--H-HHHHHHHHHHCTTCCEEECTTSBSCTT-SHHHHHHHHH
T ss_pred hhH------HHHHHhhhccCCCCCEEECCCCcCChHH--H-HHHHHHHHccCCCCCEEECCCCcCCCc-chHHHHHHHH
Confidence 110 1112222 2356888888888772111 0 12222332 567899999999999743 3444444433
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=2.9e-16 Score=135.88 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=85.0
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
+.++.++++++.+ |..+ .+++++|+|++|.|+...+. ..|.. +++|++|++++|.+....+..+..+ ++|
T Consensus 11 ~~v~Cs~~~L~~i---P~~l---p~~l~~L~Ls~N~i~~~~~~-~~f~~--l~~L~~L~L~~N~i~~~~~~~~~~~-~~L 80 (192)
T d1w8aa_ 11 TTVDCTGRGLKEI---PRDI---PLHTTELLLNDNELGRISSD-GLFGR--LPHLVKLELKRNQLTGIEPNAFEGA-SHI 80 (192)
T ss_dssp TEEECTTSCCSSC---CSCC---CTTCSEEECCSCCCCSBCCS-CSGGG--CTTCCEEECCSSCCCCBCTTTTTTC-TTC
T ss_pred CEEEEeCCCcCcc---CCCC---CCCCCEEEeCCCCCcccccc-cccCC--CceEeeeeccccccccccccccccc-ccc
Confidence 3455555555554 2222 13555556666555432221 33444 5556666666555555555555555 555
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDM 199 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l 199 (466)
++|+|++|++.... + .+|.++++|++|+|++|.|+.++ .+|..+
T Consensus 81 ~~L~Ls~N~l~~l~----------------------------~-------~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l 125 (192)
T d1w8aa_ 81 QELQLGENKIKEIS----------------------------N-------KMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp CEEECCSCCCCEEC----------------------------S-------SSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred ceeeeccccccccC----------------------------H-------HHHhCCCcccccccCCccccccCHHHhcCC
Confidence 66666655555322 1 45667777888888888887743 467778
Q ss_pred CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
++|++|+|++|.+.......+.. ..++.+.+..+.++.
T Consensus 126 ~~L~~l~L~~N~~~~~~~~~~~~-------~~l~~~~l~~~~~~c 163 (192)
T d1w8aa_ 126 NSLTSLNLASNPFNCNCHLAWFA-------EWLRKKSLNGGAARC 163 (192)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHH-------HHHHHHCCSGGGCBB
T ss_pred cccccccccccccccccchHHHh-------hhhhhhcccCCCeEe
Confidence 88888888888776443322211 124555566666553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5e-15 Score=136.20 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 261 CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 261 ~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
.++++|++|++++| ..+++.....+..+++|++|++++|
T Consensus 172 ~~~~~L~~L~L~~~------~~itd~~~~~l~~~~~L~~L~L~~C 210 (284)
T d2astb2 172 RRCPNLVHLDLSDS------VMLKNDCFQEFFQLNYLQHLSLSRC 210 (284)
T ss_dssp HHCTTCSEEECTTC------TTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred cccccccccccccc------cCCCchhhhhhcccCcCCEEECCCC
Confidence 34555666666553 2334444455556666666666664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=4.7e-16 Score=147.53 Aligned_cols=251 Identities=19% Similarity=0.182 Sum_probs=120.7
Q ss_pred ccCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCcc--------chHHHHhcCCCCCCEEEcCCCCC
Q 047429 9 HISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--------DWLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
+.+.+.++.|+|++|.+..... ...+...++|+.|+++++...... .+...+.. +++|++|+|++|.+
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT-CTTCCEEECCSCCC
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhh-CCCccccccccccc
Confidence 3445666666776666654332 122344566666666665443221 01112222 56666666666666
Q ss_pred CCCCcc--ccccccCCCCCccEEEcCCCCCCchhhhhh-------------hcccCCCcEEEccCCccccCCCh---hhh
Q 047429 78 PKINYR--SHSLVNSSSSSLTHLHLSLCGLSNSAYHCL-------------SHISKSLVYLDLSNNQLQGPTPD---YAF 139 (466)
Q Consensus 78 ~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-------------~~l~~~L~~L~Ls~n~l~~~~~~---~~~ 139 (466)
+..... ...+.. +++|++|++++|.+.......+ ... +.|+.+++++|.+...... ..+
T Consensus 106 ~~~~~~~l~~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~-~~L~~l~l~~n~i~~~~~~~l~~~l 182 (344)
T d2ca6a1 106 GPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-PPLRSIICGRNRLENGSMKEWAKTF 182 (344)
T ss_dssp CTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred ccccccchhhhhcc--cccchheecccccccccccccccccccccccccccccC-cccceeecccccccccccccccchh
Confidence 543221 011223 5566666666666542211111 122 4566666666655432211 023
Q ss_pred hcCCcccccc-cccccccccccC-CCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcC
Q 047429 140 RNMTSLASLT-SLNYITGISKCS-LPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNIL 212 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l 212 (466)
...+.|+.|+ +.|.++..+... +. ..+..+++|+.|++++|.++. +...+..+++|++|++++|.+
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~-------~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLL-------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHH-------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hhhhhhcccccccccccccccccchh-------hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence 3455566666 555554321110 11 234555666666666666543 233455566666666666666
Q ss_pred CCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccC-CCCCCcEEeCCCCee
Q 047429 213 TAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC-RPSSLVELDLESNQL 276 (466)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~-~l~~L~~L~L~~n~l 276 (466)
++.....+...+.......|++|++++|.++..... .+...+. ++++|+.|++++|++
T Consensus 256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~------~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR------TLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH------HHHHHHHHHCTTCCEEECTTSBS
T ss_pred CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH------HHHHHHHccCCCCCEEECCCCcC
Confidence 544444333332222223566666666666521100 1222222 345666666666543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-14 Score=121.16 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.+...+.+..++++|||++|+|+.. + ..+..+++|+.|+|++|.++.+. .+.. +++|++|++++|.++.+++
T Consensus 9 ~~~~~~~n~~~lr~L~L~~n~I~~i-~-~~~~~l~~L~~L~Ls~N~i~~l~----~~~~-l~~L~~L~ls~N~i~~l~~- 80 (162)
T d1a9na_ 9 EQAAQYTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKLD----GFPL-LRRLKTLLVNNNRICRIGE- 80 (162)
T ss_dssp HTSCEEECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEEC----CCCC-CSSCCEEECCSSCCCEECS-
T ss_pred hhhHhccCcCcCcEEECCCCCCCcc-C-ccccccccCCEEECCCCCCCccC----Cccc-CcchhhhhcccccccCCCc-
Confidence 3445567888899999999998866 3 45677889999999999988763 2334 8899999999999887766
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhh-hhhhcccCCCcEEEccCCccccCCC--hhhhhcCCcccccc
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAY-HCLSHISKSLVYLDLSNNQLQGPTP--DYAFRNMTSLASLT 149 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~ 149 (466)
..+.. +++|++|++++|.+..... ..+..+ ++|++|++++|.+..... ...++.+++|+.|+
T Consensus 81 -~~~~~--l~~L~~L~L~~N~i~~~~~l~~l~~l-~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 81 -GLDQA--LPDLTELILTNNSLVELGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp -CHHHH--CTTCCEEECCSCCCCCGGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred -ccccc--ccccccceeccccccccccccccccc-cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 44556 8899999999998875432 457777 889999999998874321 11456677777776
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3e-14 Score=130.87 Aligned_cols=184 Identities=26% Similarity=0.325 Sum_probs=122.4
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCC-CCCCCCccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSS-APPKINYRSHSLV 88 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 88 (466)
....+|++||++++.++.......+..+++|++|++++|.+++.. +..+.. +++|++|++++| .+++.... ....
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~--~~~l~~-~~~L~~L~Ls~c~~itd~~l~-~l~~ 118 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI--VNTLAK-NSNLVRLNLSGCSGFSEFALQ-TLLS 118 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH--HHHHTT-CTTCSEEECTTCBSCCHHHHH-HHHH
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHH--HHHHhc-CCCCcCccccccccccccccc-hhhH
Confidence 355688999999998876655466788999999999999876542 445555 899999999986 34432110 1123
Q ss_pred cCCCCCccEEEcCCCC-CCchh-hhhhhcccCCCcEEEccCCc--cccCCChhhhhcCCcccccc-ccc-ccccccccCC
Q 047429 89 NSSSSSLTHLHLSLCG-LSNSA-YHCLSHISKSLVYLDLSNNQ--LQGPTPDYAFRNMTSLASLT-SLN-YITGISKCSL 162 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~-l~~~~-~~~l~~l~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~-~~n-~l~~~~~~~l 162 (466)
. +++|++|++++|. ++... ...+....++|+.|+++++. ++.......+..+++|++|+ +.+ .+++. .
T Consensus 119 ~--~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~----~ 192 (284)
T d2astb2 119 S--CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND----C 192 (284)
T ss_dssp H--CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG----G
T ss_pred H--HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch----h
Confidence 4 7899999999874 44322 22333332679999998763 33222221335678888888 654 45543 1
Q ss_pred CccccCccccccCCCccCEEecCCC-cCCC-CCcccCCCCCcCEEEeeCC
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKN-QITG-IPKSFGDMCCLKTLKIHDN 210 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~-~~~~l~~l~~L~~L~L~~n 210 (466)
. ..+..+++|++|++++| .+++ ....++++++|++|++++|
T Consensus 193 ~-------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 193 F-------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp G-------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred h-------hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 1 35667888888888885 5655 3345677888888888877
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.8e-13 Score=108.60 Aligned_cols=103 Identities=25% Similarity=0.245 Sum_probs=85.8
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
|+|||++|+++... .+..+++|++|++++|.++.+ +..+.. +++|++|++++|.++..+ .+.. +++|
T Consensus 1 R~L~Ls~n~l~~l~---~l~~l~~L~~L~ls~N~l~~l---p~~~~~-l~~L~~L~l~~N~i~~l~----~~~~--l~~L 67 (124)
T d1dcea3 1 RVLHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRAL---PPALAA-LRCLEVLQASDNALENVD----GVAN--LPRL 67 (124)
T ss_dssp SEEECTTSCCSSCC---CGGGGTTCCEEECCSSCCCCC---CGGGGG-CTTCCEEECCSSCCCCCG----GGTT--CSSC
T ss_pred CEEEcCCCCCCCCc---ccccCCCCCEEECCCCccCcc---hhhhhh-hhcccccccccccccccC----cccc--cccc
Confidence 68999999998552 478899999999999999887 556666 999999999999998763 3566 8999
Q ss_pred cEEEcCCCCCCchh-hhhhhcccCCCcEEEccCCcccc
Q 047429 96 THLHLSLCGLSNSA-YHCLSHISKSLVYLDLSNNQLQG 132 (466)
Q Consensus 96 ~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L~Ls~n~l~~ 132 (466)
++|++++|+++... ...+..+ ++|++|++++|.+..
T Consensus 68 ~~L~l~~N~i~~~~~~~~l~~~-~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 68 QELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CEEECCSSCCCSSSTTGGGGGC-TTCCEEECTTSGGGG
T ss_pred CeEECCCCccCCCCCchhhcCC-CCCCEEECCCCcCCc
Confidence 99999999998653 3567788 899999999999874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.6e-14 Score=118.51 Aligned_cols=128 Identities=19% Similarity=0.184 Sum_probs=88.4
Q ss_pred hhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhh
Q 047429 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCL 113 (466)
Q Consensus 34 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 113 (466)
+.+..++++|+|++|+|+.+. ..... +++|++|++++|.++.+. .+.. +++|++|++++|.++...+..+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~---~~~~~-l~~L~~L~Ls~N~i~~l~----~~~~--l~~L~~L~ls~N~i~~l~~~~~ 83 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIE---NLGAT-LDQFDAIDFSDNEIRKLD----GFPL--LRRLKTLLVNNNRICRIGEGLD 83 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCC---CGGGG-TTCCSEEECCSSCCCEEC----CCCC--CSSCCEEECCSSCCCEECSCHH
T ss_pred ccCcCcCcEEECCCCCCCccC---ccccc-cccCCEEECCCCCCCccC----Cccc--CcchhhhhcccccccCCCcccc
Confidence 456677888888888888773 22233 788888888888877652 3445 7788888888888876655556
Q ss_pred hcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC
Q 047429 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP 193 (466)
Q Consensus 114 ~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 193 (466)
..+ ++|++|++++|.+.. .+. + ..+..+++|++|++++|.++..|
T Consensus 84 ~~l-~~L~~L~L~~N~i~~-~~~-------------------------l--------~~l~~l~~L~~L~l~~N~i~~~~ 128 (162)
T d1a9na_ 84 QAL-PDLTELILTNNSLVE-LGD-------------------------L--------DPLASLKSLTYLCILRNPVTNKK 128 (162)
T ss_dssp HHC-TTCCEEECCSCCCCC-GGG-------------------------G--------GGGGGCTTCCEEECCSSGGGGST
T ss_pred ccc-cccccceeccccccc-ccc-------------------------c--------cccccccccchhhcCCCcccccc
Confidence 666 788888888887762 111 0 23556677888888888777655
Q ss_pred c----ccCCCCCcCEEE
Q 047429 194 K----SFGDMCCLKTLK 206 (466)
Q Consensus 194 ~----~l~~l~~L~~L~ 206 (466)
. .+..+++|++||
T Consensus 129 ~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 129 HYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp THHHHHHHHCTTCSEET
T ss_pred chHHHHHHHCCCcCeeC
Confidence 3 356677777776
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=2.2e-13 Score=108.20 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=61.4
Q ss_pred CEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc
Q 047429 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259 (466)
Q Consensus 180 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~ 259 (466)
|+|++++|+++.++. +..+++|++|++++|++++. |..+..+ ++|++|++++|.++ .+| .
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~l-p~~~~~l------~~L~~L~l~~N~i~-----------~l~-~ 60 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAAL------RCLEVLQASDNALE-----------NVD-G 60 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGC------TTCCEEECCSSCCC-----------CCG-G
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcc-hhhhhhh------hccccccccccccc-----------ccC-c
Confidence 456666666666543 56666677777777766643 3334333 45677777777666 333 2
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCC--CCCCCCCCccEEEccCCCCC
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSAT--PKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~--~~~~~l~~L~~L~Ls~N~l~ 308 (466)
+..+++|++|++++|+| + .++ ..+..+++|++|++++|+++
T Consensus 61 ~~~l~~L~~L~l~~N~i-------~-~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 61 VANLPRLQELLLCNNRL-------Q-QSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp GTTCSSCCEEECCSSCC-------C-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cccccccCeEECCCCcc-------C-CCCCchhhcCCCCCCEEECCCCcCC
Confidence 56667777777777554 2 222 34566777777777777765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.6e-11 Score=101.44 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=85.1
Q ss_pred cccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 230 KSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
...+.++.+++.++ +.|..+..+++|++|++++| +.++...+..|.++++|+.|+|++|+|++
T Consensus 8 ~~~~~l~c~~~~~~-----------~~p~~l~~l~~l~~L~l~~n------~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 70 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-----------DSLHHLPGAENLTELYIENQ------QHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (156)
T ss_dssp SSSSCEECCSSCCC-----------TTTTTSCSCSCCSEEECCSC------SSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred CCCCeEEecCCCCc-----------cCcccccCccccCeeecCCC------ccccccCchhhccccccCcceeeccccCC
Confidence 44667888888887 66777888899999999764 34555556778999999999999999998
Q ss_pred CchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhc
Q 047429 310 MVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLL 389 (466)
Q Consensus 310 ~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~ 389 (466)
+.+.+|..+++| ++|+|++|+++
T Consensus 71 i~~~~f~~l~~L----------------------------------------------~~L~Ls~N~l~----------- 93 (156)
T d2ifga3 71 VAPDAFHFTPRL----------------------------------------------SRLNLSFNALE----------- 93 (156)
T ss_dssp ECTTGGGSCSCC----------------------------------------------CEEECCSSCCS-----------
T ss_pred cccccccccccc----------------------------------------------cceeccCCCCc-----------
Confidence 778888877666 88999999998
Q ss_pred cCCCcccccCCCCCCeeeccCCcCc
Q 047429 390 IGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 390 ~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
.+|........|+.|+|++|.+.
T Consensus 94 --~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 94 --SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp --CCCSTTTCSCCCCEEECCSSCCC
T ss_pred --ccChhhhccccccccccCCCccc
Confidence 44444444457999999999884
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=1.1e-13 Score=119.73 Aligned_cols=154 Identities=17% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCcEEeCCCcc--ccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 14 DLQSINIGLNA--IRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 14 ~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
..+.+++.++. +. ..+ ..+..+++|++|+|++|.|+.+. .+.. +++|++|++++|.++.++. ....
T Consensus 24 ~~~~~~l~~~~~~i~-~l~-~sl~~L~~L~~L~Ls~n~I~~i~----~l~~-l~~L~~L~Ls~N~i~~i~~---~~~~-- 91 (198)
T d1m9la_ 24 EAEKVELHGMIPPIE-KMD-ATLSTLKACKHLALSTNNIEKIS----SLSG-MENLRILSLGRNLIKKIEN---LDAV-- 91 (198)
T ss_dssp TCSCEECCBCCTTCC-CCH-HHHHHTTTCCEEECSEEEESCCC----CHHH-HTTCCEEECCEEEECSCSS---HHHH--
T ss_pred ccceeeeecccCchh-hhh-hHHhcccccceeECcccCCCCcc----cccC-CccccChhhcccccccccc---cccc--
Confidence 34556665442 32 222 56777888888888888877662 2444 7788888888887776543 2222
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|++++|.++.. ..+..+ ++|++|++++|.++....-..+..+++|+.|+ ++|.+........... .-..
T Consensus 92 ~~~L~~L~l~~N~i~~l--~~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~r~ 167 (198)
T d1m9la_ 92 ADTLEELWISYNQIASL--SGIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS-EYRI 167 (198)
T ss_dssp HHHCCEEECSEEECCCH--HHHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHH-HHHH
T ss_pred ccccccccccccccccc--cccccc-ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchh-hHHH
Confidence 45678888888887754 235666 77888888888776432111567777888888 7776654311100000 0000
Q ss_pred ccccCCCccCEEe
Q 047429 171 YAFSNVTSLMDLD 183 (466)
Q Consensus 171 ~~l~~l~~L~~L~ 183 (466)
..+..+++|+.||
T Consensus 168 ~vi~~lp~L~~LD 180 (198)
T d1m9la_ 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCCEES
T ss_pred HHHHHCCCcCEeC
Confidence 1255678888876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=4.5e-13 Score=115.71 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=39.6
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+..+++|++|++++|.++.++.....+++|++|++++|.++.. +. +..+ ++|+.|++++|+++
T Consensus 66 l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l-~~-~~~l------~~L~~L~L~~N~i~--------- 128 (198)
T d1m9la_ 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SG-IEKL------VNLRVLYMSNNKIT--------- 128 (198)
T ss_dssp HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH-HH-HHHH------HHSSEEEESEEECC---------
T ss_pred ccCCccccChhhccccccccccccccccccccccccccccccc-cc-cccc------ccccccccccchhc---------
Confidence 3444555555555555555444333344555555555555432 11 2222 34555555555554
Q ss_pred ccccC--cccCCCCCCcEEeCCCCe
Q 047429 253 DGTFP--KQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 253 ~~~lp--~~~~~l~~L~~L~L~~n~ 275 (466)
.++ ..+..+++|+.|++++|.
T Consensus 129 --~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 129 --NWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --CHHHHHHHTTTTTCSEEEECSSH
T ss_pred --cccccccccCCCccceeecCCCc
Confidence 222 124455555555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.4e-10 Score=92.55 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=83.1
Q ss_pred CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCC-cCCCccchhhhhccccccccccceEecCCccccccCCCCcccccc
Q 047429 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN-ILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGT 255 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~ 255 (466)
...+.++.+++.+...|..+..+++|++|++++| .++...+..|..+ ++|+.|++++|+|+ .
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l------~~L~~L~Ls~N~l~-----------~ 70 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL------GELRNLTIVKSGLR-----------F 70 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSC------CCCSEEECCSSCCC-----------E
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccc------cccCcceeeccccC-----------C
Confidence 3456688888888888888888899999999766 4777666666665 67999999999988 4
Q ss_pred c-CcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 256 F-PKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 256 l-p~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
+ |.+|..+++|++|+|++|+| ..+|........|+.|+|++|.+.
T Consensus 71 i~~~~f~~l~~L~~L~Ls~N~l--------~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 71 VAPDAFHFTPRLSRLNLSFNAL--------ESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp ECTTGGGSCSCCCEEECCSSCC--------SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cccccccccccccceeccCCCC--------cccChhhhccccccccccCCCccc
Confidence 4 35588899999999999666 355554444457999999999985
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8.1e-09 Score=85.37 Aligned_cols=124 Identities=19% Similarity=0.100 Sum_probs=76.4
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.||+++.... ..+..+..+..++...+.... ...+...+++|++|+|++|+++.+.+....+.. ++
T Consensus 23 ~~~~Ldls~l~~~-----~~l~~~~~~~~l~~~~~~~~~----l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~--l~ 91 (162)
T d1koha1 23 SQQALDLKGLRSD-----PDLVAQNIDVVLNRRSSMAAT----LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK--AP 91 (162)
T ss_dssp SSCCBCCCCCSSC-----TTTTTTTCCCCTTSHHHHHHH----HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH--ST
T ss_pred hhCeeecccCCCC-----chhhhccchhhcchhhhHhhh----hHHHHHhCCCCCEeeCCCccccCCchhHHHHhh--CC
Confidence 4556777655432 123333334433333332222 233433489999999999999887653344556 88
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCCh------hhhhcCCcccccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPD------YAFRNMTSLASLT 149 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~------~~~~~l~~L~~L~ 149 (466)
+|++|++++|.++....-.+... ..|+.|++++|.+...... ..+..+++|+.|+
T Consensus 92 ~L~~L~Ls~N~i~~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 92 NLKILNLSGNELKSERELDKIKG-LKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp TCCCCCCTTSCCCCGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cccccccccCccccchhhhhhhc-cccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 99999999999987554444455 6789999999988754432 0233455555555
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.1e-08 Score=82.82 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=66.7
Q ss_pred HHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhh
Q 047429 32 QWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYH 111 (466)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 111 (466)
..+..+++|++|+|++|+++.+..+...+.. +++|+.|++++|.++.+.. ..... ...|++|++++|.+......
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~--l~~l~--~~~L~~L~L~~Npl~~~~~~ 133 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERE--LDKIK--GLKLEELWLDGNSLSDTFRD 133 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCCCGGG--HHHHT--TCCCSSCCCTTSTTSSSSSS
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccccchh--hhhhh--ccccceeecCCCCcCcCccc
Confidence 4456799999999999999987543445556 9999999999999998766 33334 56799999999999754321
Q ss_pred -------hhhcccCCCcEEE
Q 047429 112 -------CLSHISKSLVYLD 124 (466)
Q Consensus 112 -------~l~~l~~~L~~L~ 124 (466)
.+..+ ++|+.||
T Consensus 134 ~~~y~~~i~~~~-P~L~~LD 152 (162)
T d1koha1 134 QSTYISAIRERF-PKLLRLD 152 (162)
T ss_dssp HHHHHHHHHTTS-TTCCEET
T ss_pred chhHHHHHHHHC-CCCCEEC
Confidence 23445 8999885
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.08 E-value=1.2e-07 Score=78.50 Aligned_cols=122 Identities=10% Similarity=0.192 Sum_probs=82.5
Q ss_pred cCCCccCEEecCCC-cCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 174 SNVTSLMDLDLSKN-QITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n-~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
.+.++|++|+|+++ .++. +...+...+.|++|++++|.+.......+...+..+ +.|++|++++|.+++...
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n--~~L~~L~L~~n~i~~~g~ 89 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPELL 89 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhc--ccccceeeehhhcchHHH
Confidence 34678999999874 4654 334577788899999999988754444444333221 569999999998874321
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc----cCCCCCCCCCCccEEEccCCCC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING----SATPKLCSSPMLQVLDFSHNNI 307 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~N~l 307 (466)
. .+-..+...++|++|++++|.+ +.+.. .+...+...+.|+.|+++.+..
T Consensus 90 ~------~l~~aL~~n~sL~~L~l~~n~~----~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 90 A------RLLRSTLVTQSIVEFKADNQRQ----SVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp H------HHHHHTTTTCCCSEEECCCCSS----CCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred H------HHHHHHHhCCcCCEEECCCCcC----CCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 1 2334577788999999998765 33321 2344556678899999987654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.00 E-value=6.2e-06 Score=67.81 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=75.7
Q ss_pred cCCcCCcEEeCCCc-cccccch---HHHhhcCCCCcEEEccCCCCCCc--cchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 10 ISLEDLQSINIGLN-AIRVRKF---DQWLSYHNKLTSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.+.++|++|+|+++ .+..... ...+...+.|++|+|++|.+... ..+...+.. .+.|++|+|++|.++.....
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~~ 90 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLA 90 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhh-cccccceeeehhhcchHHHH
Confidence 35688999999874 4654332 13456778899999999988653 222334444 78899999999988754321
Q ss_pred --ccccccCCCCCccEEEcCCCCCCch-------hhhhhhcccCCCcEEEccCCcc
Q 047429 84 --SHSLVNSSSSSLTHLHLSLCGLSNS-------AYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 84 --~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
...+.. .++|++|++++|.+... +...+... ++|+.|+++.+..
T Consensus 91 ~l~~aL~~--n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 91 RLLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM 143 (167)
T ss_dssp HHHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred HHHHHHHh--CCcCCEEECCCCcCCCccHHHHHHHHHHHHhC-CCccEeeCcCCCc
Confidence 123334 67799999988865432 22334445 7888888876643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.52 E-value=5.3e-06 Score=68.17 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred cCCCccCEEecCC-CcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 174 SNVTSLMDLDLSK-NQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 174 ~~l~~L~~L~Ls~-n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
.+.++|++|++++ +.++. +..++...++|++|++++|.++......+...+... .+++.+++++|.++....
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~--~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN--NTLKSLNVESNFISGSGI 91 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC--SSCCEEECCSSCCCHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc--ccchhhhhccccccchhH
Confidence 4568899999987 45655 334567788999999999988765444444333221 468999999988863211
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc----cCCCCCCCCCCccEEEccCCCC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING----SATPKLCSSPMLQVLDFSHNNI 307 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~N~l 307 (466)
. .+...+...++|+.++|..+. |.+.. .+...+...+.|+.|+++.+..
T Consensus 92 ~------~l~~~l~~~~~L~~l~L~l~~-----n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 92 L------ALVEALQSNTSLIELRIDNQS-----QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp H------HHHHGGGGCSSCCEEECCCCS-----SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred H------HHHHHHHhCccccEEeeccCC-----CcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 1 233456777888876665321 22222 2344556788999999987754
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.48 E-value=6.7e-05 Score=61.24 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=76.3
Q ss_pred cCCcCCcEEeCCC-ccccccch---HHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCc-
Q 047429 10 ISLEDLQSINIGL-NAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINY- 82 (466)
Q Consensus 10 ~~l~~L~~L~Ls~-n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 82 (466)
.+.+.|++|++++ +.++.... ...+...++|++|++++|.++... .+...+.. .+.++.+++++|.++....
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccchhHH
Confidence 4668999999987 45665443 134557888999999999886541 11223334 7899999999988764422
Q ss_pred -cccccccCCCCCccEEEcC--CCCCCchh----hhhhhcccCCCcEEEccCCcc
Q 047429 83 -RSHSLVNSSSSSLTHLHLS--LCGLSNSA----YHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 83 -~~~~~~~~~l~~L~~L~Ls--~n~l~~~~----~~~l~~l~~~L~~L~Ls~n~l 130 (466)
....+.. .++|+.++|. +|.+.... ...+... ++|+.|+++.+..
T Consensus 93 ~l~~~l~~--~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n-~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 93 ALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSH
T ss_pred HHHHHHHh--CccccEEeeccCCCcCcHHHHHHHHHHHHhC-CCcCEEeCcCCCC
Confidence 1123344 6778876654 56675433 3344455 8899999887654
|