Citrus Sinensis ID: 047433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
Protein Sequence
MDSLTTKVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGKLCAIHSY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccHHHHHHHHccHHHccccccccccccHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHccccEEEEHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHccHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcc
Coil and Loop (DISEMBL)
mdslttkvekniptnnkrtcanpccffctmeepnsslrragvasffkemplqddQQHVLALSGLwniamtqpddplfpalgiFNCMSSLiskgvnnrdwllrdqniyipYYAAHVIGSYTMNKVEFAEKAvksgvipplMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLltrgvgglefenQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWgglvnhnspagVGLIRILCYSKTGRKNIAECKQVIENLCnlsrssddwqyMGIDCLLfllkdpdtRYKVIETAALFLIDLVELNslldrpknLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEAlgvcpsrpknermVLYSNRAQCHLLLREPDAAISDATRalclsnppnshckslwRRSQaydmkglgrESLMDCIMFINgcirsettskrvkIPYYAARMISKHMNALWVFggarskilsspvnnvqesygenksgieEQRYCDMIRTMMEKKnlisgklcaihsy
Flexible Loop (DISEMBL)
mdslttkvekniptnnkrtcanpCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVavkdrkkrlkyhsdlltrGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLsnppnshckslwrRSQAYDMKGLGRESLMDCIMFINgcirsettskrVKIPYYAARMISKHMNALWVFGGARSKILSSPVNnvqesygenksgieeQRYCDMIRTMMEkknlisgklcaihsy
Low Complexity Region (SEG)
MDSLTTKVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELkverrkrekmmmmseekveemrvLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGKLCAIHSY
Disordered region (IsUnstruct)
*****************RTCANPCCFFCTMEE****LRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKV*****************EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS*******************QRYCDMIRTMMEKKNLISGKLCAI***
Disordered Region (DISOPRED)
******************TCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL****************************************************IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC*************************************************************************LISGKLCAIHSY
Disordered Region (DISEMBL)
MDSLTTKVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGKLCAIHSY
Disordered Region (DISPRO)
**********NIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKR****MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQES****KSGIEEQRYCDMIRTMMEKKNLISGKLCAIHSY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLTTKVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGKLCAIHSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	614	2.2.26 [Sep-21-2011]
Q3ZBR5	292	Tetratricopeptide repeat	yes	no	0.175	0.369	0.342	3e-07
Q99614	292	Tetratricopeptide repeat	yes	no	0.175	0.369	0.333	3e-07
Q9H3U1	944	Protein unc-45 homolog A	no	no	0.167	0.109	0.339	2e-06
Q6DGE9	934	Protein unc-45 homolog B	yes	no	0.138	0.091	0.352	4e-06
Q99KD5	944	Protein unc-45 homolog A	yes	no	0.164	0.106	0.333	6e-06
Q5RAP0	929	Protein unc-45 homolog A	no	no	0.180	0.119	0.322	6e-06
Q32PZ3	944	Protein unc-45 homolog A	yes	no	0.164	0.106	0.333	6e-06
Q91Z38	292	Tetratricopeptide repeat	no	no	0.151	0.318	0.322	1e-05
Q20683	179	Tetratricopeptide repeat	yes	no	0.114	0.391	0.355	3e-05
Q9CYG7	309	Mitochondrial import rece	no	no	0.123	0.245	0.380	0.0001

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ 470
           M +E+ +  R     +K+E    F  G+  EA   YT AL  CPS  + +R VL+SNRA 
Sbjct: 104 MPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAA 163

Query: 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             +   + + AISD ++A+ L NP  S+ +++ RR++ Y+      E+L D
Sbjct: 164 ARMKQEKKEMAISDCSKAIQL-NP--SYIRAILRRAELYEKTDKLDEALED 211

Bos taurus (taxid: 9913)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ 470
           MS+E+ ++ R     +K+E    F  G+  EA   Y+ AL +CPS  + ER +L+SNRA 
Sbjct: 104 MSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAA 163

Query: 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             +   + + AI+D ++A+ L NP  S+ +++ RR++ Y+      E+L D
Sbjct: 164 ARMKQDKKEMAINDCSKAIQL-NP--SYIRAILRRAELYEKTDKLDEALED 211

Homo sapiens (taxid: 9606)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +++E   LF  G+   A   YT+ALG+  + P+++  VL+ NRA CHL L + D A ++A
Sbjct: 24  LRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQ-AVLHRNRAACHLKLEDYDKAETEA 81

Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
           ++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct: 82  SKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLQRCVSLEPKNK 126

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +K+E    F  GEI++A   YT+A+  C    K    V+Y NR+ C L       A SDA
Sbjct: 12  LKEEGNKHFQAGEIDQAIDCYTKAIKTCKKEDKKALAVIYRNRSACFLKKENYSNAASDA 71

Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKG 513
           T+A+   +   +  K+L+RR QA++  G
Sbjct: 72  TKAI---DVDAADIKALYRRCQAFEKLG 96

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development. Required for myoseptal integrity, myofiber attachment, motility and craniofacial development.

Danio rerio (taxid: 7955)

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEAL--GVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS 483
           +++E   LF  G+ E A   YT+AL  G  P     ++ +L+ NRA CHL L +   A S
Sbjct: 24  LRKEGNELFKCGDYEGALTAYTQALSLGATP----QDQAILHRNRAACHLKLEDYSKAES 79

Query: 484 DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
           +A++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct: 80  EASKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLKRCVSLEPKNK 126

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 16/127 (12%)

Query: 411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ 470
           M+   VE++R       +E   LF  G+   A   YT+ALG+  + P+++  VL+ NRA 
Sbjct: 1   MTASSVEQLR-------KEGNELFKCGDYGGALAAYTQALGL-DATPQDQ-AVLHRNRAA 51

Query: 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530
           C+L L + D A ++A++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+
Sbjct: 52  CYLKLEDYDKAETEASKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLQRCV 104

Query: 531 RSETTSK 537
             E  +K
Sbjct: 105 SLEPKNK 111

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEAL--GVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS 483
           +++E   LF  G+ E A   YT+AL  G  P     ++ +L+ NRA CHL L +   A S
Sbjct: 24  LRKEGNELFKCGDYEGALTAYTQALSLGATP----QDQAILHRNRAACHLKLEDYSKAES 79

Query: 484 DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
           +A++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct: 80  EASKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLKRCVSLEPKNK 126

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Rattus norvegicus (taxid: 10116)

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +K+E    F  G+  EA   Y++AL +CP+  + +R VL+SNRA   +   + + AI+D 
Sbjct: 119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDC 178

Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           ++A+ L NP  ++ +++ RR++ Y+      E+L D
Sbjct: 179 SKAIQL-NP--TYIRAILRRAELYEKTDKLDEALED 211

Mus musculus (taxid: 10090)

>sp|Q20683|TTC36_CAEEL Tetratricopeptide repeat protein 36 homolog OS=Caenorhabditis elegans GN=F52H3.5 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN-S 497
           ++EA  K+T+AL VCP  P       Y+NRAQ + L  +P+ A+ D   AL L+ P   +
Sbjct: 59  LDEAIEKFTKALEVCPKNPS-----AYNNRAQAYRLQNKPEKALDDLNEALSLAGPKTKT 113

Query: 498 HCKSLWRRSQAYDMKG 513
            C++  +R+  Y ++G
Sbjct: 114 ACQAYVQRASIYRLRG 129

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CYG7|TOM34_MOUSE Mitochondrial import receptor subunit TOM34 OS=Mus musculus GN=Tomm34 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +K+E   L   G  ++A  KY+E+L +C S         YSNRA CHL+L++   A+ D 
Sbjct: 196 LKEEGNDLVKKGNHKKAIEKYSESL-LCSSL----ESATYSNRALCHLVLKQYKEAVKDC 250

Query: 486 TRALCLSNPPNSHCKSLWRRSQAY 509
           T AL L      + K+ +RR+QAY
Sbjct: 251 TEALKLD---GKNVKAFYRRAQAY 271

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
225458780	645	PREDICTED: uncharacterized protein LOC10	0.949	0.903	0.730	0.0
147838438	1000	hypothetical protein VITISV_028488 [Viti	0.949	0.583	0.730	0.0
302142229	622	unnamed protein product [Vitis vinifera]	0.912	0.900	0.702	0.0
255538118	574	heat shock protein 70 (HSP70)-interactin	0.933	0.998	0.720	0.0
225438918	636	PREDICTED: uncharacterized protein LOC10	0.933	0.900	0.662	0.0
356509763	564	PREDICTED: uncharacterized protein LOC10	0.902	0.982	0.650	0.0
255567973	632	heat shock protein 70 (HSP70)-interactin	0.928	0.901	0.622	0.0
449450546	573	PREDICTED: uncharacterized protein LOC10	0.918	0.984	0.621	0.0
358345504	643	Tetratricopeptide repeat protein [Medica	0.918	0.877	0.604	0.0
224074227	607	predicted protein [Populus trichocarpa]	0.863	0.873	0.65	0.0

>gi|225458780|ref|XP_002283265.1| PREDICTED: uncharacterized protein LOC100267728 [Vitis vinifera]

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/589 (73%), Positives = 499/589 (84%), Gaps = 6/589 (1%)

Query: 19  TCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFP 78
            C NP CFFC M+EP+SS+RR G+ + FKE+PL DDQ+HVL LSGL+NIAMTQPDDP FP
Sbjct: 28  ACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLTDDQEHVLVLSGLFNIAMTQPDDPEFP 87

Query: 79  ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP 138
           +LGIF+CM+SLIS+ + ++DWLLR QN+YIPYYAAHVIGSYTMNKVEFAEKAV+SGVIPP
Sbjct: 88  SLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESGVIPP 147

Query: 139 LMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNF 198
           LMELLRGK++WVEQRVAVRALGHLASY+RTF++VA YE+EVV+LAMQLASTCL+VVY  F
Sbjct: 148 LMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVVYAEF 207

Query: 199 VAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLIC 258
           V V D K RLKYH DLLTRG+GG+E EN+KAEEWA QLQCWSLYLLNCFA KER+++LIC
Sbjct: 208 VGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKERAINLIC 267

Query: 259 NKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDD 318
            +QEFL DLC MWGGLVNH SPAGVGLIRILCY KTGRK+IAE ++V+E+LCNLSRSSDD
Sbjct: 268 -RQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSRSSDD 326

Query: 319 WQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKL 378
           WQY+G+DCLL LL+D DTRYKV+E A LFL+DLVEL SL  R   +GEAITR LLLDY  
Sbjct: 327 WQYVGVDCLLLLLRDQDTRYKVMEIAILFLVDLVELRSLGGR-SYVGEAITRTLLLDYNQ 385

Query: 379 TEQKFKNKK-VQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLG 437
           T  K KN K VQ+ALEEIW LK+ER++RE+  MMS EKVEE +VL+ LIKQ+     WLG
Sbjct: 386 TRSKLKNNKVVQRALEEIWVLKLERKRRER--MMSNEKVEERKVLISLIKQQGNQRCWLG 443

Query: 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497
           E+EEA +KY+EAL +CPSR + ER+VLYSNRAQCHLLL +PDA I DATRAL LS PPNS
Sbjct: 444 EVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSIPPNS 503

Query: 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALW 557
           H KSLWRRSQAYDMKGL +ESLMDCIMFINGCI SETT KRVK+PY+AARMISK M A W
Sbjct: 504 HGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETT-KRVKVPYFAARMISKQMEATW 562

Query: 558 VFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISG 606
           +F  ARSK+ S+  N VQES  E++ G +EQ+  DM+RTMME KN  SG
Sbjct: 563 LFSTARSKLSSTQPNKVQESDDEDEGGNDEQQLDDMMRTMMENKNFKSG 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838438|emb|CAN63254.1| hypothetical protein VITISV_028488 [Vitis vinifera]

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/589 (73%), Positives = 499/589 (84%), Gaps = 6/589 (1%)

Query: 19  TCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFP 78
            C NP CFFC M+EP+SS+RR G+ + FKE+PL DDQ+HVL LSGL+NIAMTQPDDP FP
Sbjct: 4   ACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLTDDQEHVLVLSGLFNIAMTQPDDPEFP 63

Query: 79  ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP 138
           +LGIF+CM+SLIS+ + ++DWLLR QN+YIPYYAAHVIGSYTMNKVEFAEKAV+SGVIPP
Sbjct: 64  SLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESGVIPP 123

Query: 139 LMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNF 198
           LMELLRGK++WVEQRVAVRALGHLASY+RTF++VA YE+EVV+LAMQLASTCL+VVY  F
Sbjct: 124 LMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVVYAEF 183

Query: 199 VAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLIC 258
           V V D K RLKYH DLLTRG+GG+E EN+KAEEWA QLQCWSLYLLNCFA KER+++LIC
Sbjct: 184 VGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKERAINLIC 243

Query: 259 NKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDD 318
            +QEFL DLC MWGGLVNH SPAGVGLIRILCY KTGRK+IAE ++V+E+LCNLSRSSDD
Sbjct: 244 -RQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSRSSDD 302

Query: 319 WQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKL 378
           WQY+G+DCLL LL+D DTRYKV+E A LFL+DLVEL SL  R   +GEAITR LLLDY  
Sbjct: 303 WQYVGVDCLLLLLRDQDTRYKVMEIAILFLVDLVELRSLGGR-SYVGEAITRTLLLDYNQ 361

Query: 379 TEQKFKNKK-VQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLG 437
           T  K KN K VQ+ALEEIW LK+ER++RE+  MMS EKVEE +VL+ LIKQ+     WLG
Sbjct: 362 TRSKLKNNKVVQRALEEIWVLKLERKRRER--MMSNEKVEERKVLISLIKQQGNQRCWLG 419

Query: 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497
           E+EEA +KY+EAL +CPSR + ER+VLYSNRAQCHLLL +PDA I DATRAL LS PPNS
Sbjct: 420 EVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSIPPNS 479

Query: 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALW 557
           H KSLWRRSQAYDMKGL +ESLMDCIMFINGCI SETT KRVK+PY+AARMISK M A W
Sbjct: 480 HGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETT-KRVKVPYFAARMISKQMEATW 538

Query: 558 VFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISG 606
           +F  ARSK+ S+  N VQES  E++ G +EQ+  DM+RTMME KN  SG
Sbjct: 539 LFSTARSKLSSTQPNKVQESDDEDEGGNDEQQLDDMMRTMMENKNFKSG 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142229|emb|CBI19432.3| unnamed protein product [Vitis vinifera]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/589 (70%), Positives = 481/589 (81%), Gaps = 29/589 (4%)

Query: 19  TCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFP 78
            C NP CFFC M+EP+SS+RR G+ + FKE+PL DDQ+HVL LSGL+NIAMTQPDDP FP
Sbjct: 28  ACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLTDDQEHVLVLSGLFNIAMTQPDDPEFP 87

Query: 79  ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP 138
           +LGIF+CM+SLIS+ + ++DWLLR QN+YIPYYAAHVIGSYTMNKVEFAEKAV+SGVIPP
Sbjct: 88  SLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESGVIPP 147

Query: 139 LMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNF 198
           LMELLRGK++WVEQRVAVRALGHLASY+RTF++VA YE+EVV+LAMQLASTCL+VVY  F
Sbjct: 148 LMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVVYAEF 207

Query: 199 VAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLIC 258
           V V D K RLKYH DLLTRG+GG+E EN+KAEEWA QLQCWSLYLLNCFA KER+++LIC
Sbjct: 208 VGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKERAINLIC 267

Query: 259 NKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDD 318
            +QEFL DLC MWGGLVNH SPAGVGLIRILCY KTGRK+IAE ++V+E+LCNLSRSSDD
Sbjct: 268 -RQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSRSSDD 326

Query: 319 WQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKL 378
           WQY+G+DCLL LL+D DTRYKV+E A L                         LLLDY  
Sbjct: 327 WQYVGVDCLLLLLRDQDTRYKVMEIAIL------------------------TLLLDYNQ 362

Query: 379 TEQKFKNKK-VQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLG 437
           T  K KN K VQ+ALEEIW LK+ER++RE+  MMS EKVEE +VL+ LIKQ+     WLG
Sbjct: 363 TRSKLKNNKVVQRALEEIWVLKLERKRRER--MMSNEKVEERKVLISLIKQQGNQRCWLG 420

Query: 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497
           E+EEA +KY+EAL +CPSR + ER+VLYSNRAQCHLLL +PDA I DATRAL LS PPNS
Sbjct: 421 EVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSIPPNS 480

Query: 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALW 557
           H KSLWRRSQAYDMKGL +ESLMDCIMFINGCI SETT KRVK+PY+AARMISK M A W
Sbjct: 481 HGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETT-KRVKVPYFAARMISKQMEATW 539

Query: 558 VFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISG 606
           +F  ARSK+ S+  N VQES  E++ G +EQ+  DM+RTMME KN  SG
Sbjct: 540 LFSTARSKLSSTQPNKVQESDDEDEGGNDEQQLDDMMRTMMENKNFKSG 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538118|ref|XP_002510124.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223550825|gb|EEF52311.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/577 (72%), Positives = 488/577 (84%), Gaps = 4/577 (0%)

Query: 30  MEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSL 89
           M+E + SLRRAG+AS FKEMPL+D Q+HVL LSGLWNIAMTQPDDP FP+LG+FNCM+SL
Sbjct: 1   MKEQDLSLRRAGIASCFKEMPLEDSQEHVLVLSGLWNIAMTQPDDPEFPSLGVFNCMASL 60

Query: 90  ISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISW 149
           I KG N+R WLL DQNIYIPYYAAHVIGSYTMNK EFAEKAV+SGVIPPLMELLRGKISW
Sbjct: 61  IRKGTNDRSWLLTDQNIYIPYYAAHVIGSYTMNKAEFAEKAVESGVIPPLMELLRGKISW 120

Query: 150 VEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLK 209
           VEQRVAVRALGHLASY+RTF +VA YE+E+VKL  +LASTCL  VY NFV VKD KKRLK
Sbjct: 121 VEQRVAVRALGHLASYERTFPAVAEYEQELVKLTTELASTCLAAVYANFVGVKDVKKRLK 180

Query: 210 YHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCN 269
           YHSDLLTRGVGG++ EN KAEEWA QLQCWSLYLLNCFACKERSL+LIC +Q+FL DLC 
Sbjct: 181 YHSDLLTRGVGGIDTENTKAEEWASQLQCWSLYLLNCFACKERSLELIC-RQDFLKDLCG 239

Query: 270 MWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLF 329
           MWGGLVNH+SPAG+GLIRILCYS  GRK ++EC++VI+ LCNLSRSSDDWQYMGIDCLL 
Sbjct: 240 MWGGLVNHSSPAGIGLIRILCYSINGRKRVSECEEVIKRLCNLSRSSDDWQYMGIDCLLL 299

Query: 330 LLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQ 389
           LLKD DTR++VIE A LFL+DLVEL +L DR  N+GE IT+ALLLDYK ++ K KNKKV 
Sbjct: 300 LLKDQDTRHEVIEIATLFLVDLVELRNLGDRL-NVGETITKALLLDYKQSKLKKKNKKVG 358

Query: 390 KALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEA 449
           K L+EIW+LKVER++REK +M+S+EKVEE RV+VGLIKQ+A   FWLG+IEEA  KY+EA
Sbjct: 359 KVLQEIWDLKVERQRREK-LMLSKEKVEERRVMVGLIKQQANRFFWLGDIEEALAKYSEA 417

Query: 450 LGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAY 509
           L +CP R + ERMV++SN+A CHLLL +PDAAIS++TRAL LS+P NSH KSLWRRSQAY
Sbjct: 418 LDMCPLRLRKERMVIHSNKAHCHLLLGDPDAAISESTRALSLSSPANSHSKSLWRRSQAY 477

Query: 510 DMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSS 569
           DMKGL +ESLMDCIMF+N CI +E T KR+KIP+ AARMISK M+A W+F GA+SK +  
Sbjct: 478 DMKGLAKESLMDCIMFLNSCINTE-TRKRMKIPHCAARMISKQMDATWLFAGAKSKAVRG 536

Query: 570 PVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISG 606
            V  ++    ++ +   ++    M+R MMEKK LISG
Sbjct: 537 QVQRLEGDCDKSGNDRMKKYEEMMMRFMMEKKGLISG 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438918|ref|XP_002279273.1| PREDICTED: uncharacterized protein LOC100242317 [Vitis vinifera]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/583 (66%), Positives = 471/583 (80%), Gaps = 10/583 (1%)

Query: 4   LTTKVEKNIPTNN-KRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALS 62
           + ++ +KN    N K  C NPCCFFC M E + SLRRAG+A  FKEMPL+DDQ+HVLALS
Sbjct: 1   MESQHQKNTTHKNVKVLCTNPCCFFCAMNEADPSLRRAGIAKCFKEMPLRDDQEHVLALS 60

Query: 63  GLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMN 122
           GLWNIAMTQPDDP FP LGIF C ++LI +G+++++WLLRDQNIYIPYYAAH+IGSYTMN
Sbjct: 61  GLWNIAMTQPDDPEFPLLGIFECAANLIRRGISDKEWLLRDQNIYIPYYAAHIIGSYTMN 120

Query: 123 KVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKL 182
           KV+FAE+AVKSGVI  LMELLRGK+SWVE+RVAVRALGHLAS++RTF+++AV+E E++  
Sbjct: 121 KVQFAERAVKSGVISSLMELLRGKMSWVEKRVAVRALGHLASHERTFEAIAVHEAEIIHE 180

Query: 183 AMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLY 242
           +M+ ASTCLD VYV FV V +  +RLKYH DLLTRG GGLE EN+KAEEWA QLQCWSLY
Sbjct: 181 SMETASTCLDEVYVEFVGV-EHTRRLKYHCDLLTRGTGGLEIENRKAEEWASQLQCWSLY 239

Query: 243 LLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAEC 302
           LLNCFACKERSL+ ICNK EFL  LC MWGGL N +SPAG+GLIR LCY+KTGR+++A+ 
Sbjct: 240 LLNCFACKERSLNRICNK-EFLKKLCGMWGGLANGSSPAGIGLIRNLCYTKTGRRSVADS 298

Query: 303 KQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPK 362
           K+VIE+LCN SRSSD+WQYM IDCLL +LKDPDTRYKV+ TA LFL+DLVEL SL  R K
Sbjct: 299 KEVIESLCNTSRSSDEWQYMAIDCLLLILKDPDTRYKVLNTAVLFLVDLVELRSLRGRTK 358

Query: 363 NLGEAITRALLLDY---KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEM 419
            +GEAIT+ LL DY   K      K+K+ ++ LEEIW+LKVER+KRE   +M+EE+  E 
Sbjct: 359 -VGEAITQTLLQDYNQLKYGNLDLKSKRAERTLEEIWDLKVERKKREN--IMTEEEARER 415

Query: 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPD 479
           R+L G++KQE   LFW G+IE A +KYTEAL +CP + + ER+VL+SNRAQCHLLLR+ +
Sbjct: 416 RLLAGVMKQEGNQLFWSGDIEAAVLKYTEALELCPLKMRKERVVLHSNRAQCHLLLRDTE 475

Query: 480 AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV 539
           +AISD+TRAL LS+  + H KSLWRRSQAYDMKGL +ESLMDC+MFIN  I+S  T+  V
Sbjct: 476 SAISDSTRALNLSSVLSPHSKSLWRRSQAYDMKGLAKESLMDCLMFINDRIKSLDTNG-V 534

Query: 540 KIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK 582
           KIPYYAARMI+K MN  W+F  ARSK L++     QES G ++
Sbjct: 535 KIPYYAARMITKQMNTTWIFATARSKNLNNHGVENQESNGHHQ 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509763|ref|XP_003523615.1| PREDICTED: uncharacterized protein LOC100777591 [Glycine max]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/586 (65%), Positives = 469/586 (80%), Gaps = 32/586 (5%)

Query: 30  MEEPNSSLRRAGVASFFKEMPL---QDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCM 86
           M EP++SLRRAG+A+ F+EMP    ++  +HVL LSGLW+IAM+QP+D  FP+LGIF CM
Sbjct: 1   MREPDASLRRAGIATCFREMPQAQGENHHEHVLVLSGLWHIAMSQPNDSEFPSLGIFKCM 60

Query: 87  SSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGK 146
           +SLI KG+N+R+WLL +QNIYIPYYAAH+IGSYTMNK EFA+KAV+SGVIPPL++LL GK
Sbjct: 61  ASLIHKGINDRNWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQKAVQSGVIPPLLDLLSGK 120

Query: 147 ISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKK 206
           ISWVEQRVAVRALGHLASY  TF+SVA +E+EVVKLA++LASTCL VVYV+FVA+K+  K
Sbjct: 121 ISWVEQRVAVRALGHLASYKSTFESVAQHEQEVVKLALKLASTCLQVVYVDFVALKE-NK 179

Query: 207 RLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMD 266
           RL+YH +L+TRGVG LE EN+KAEEWA QLQCWSLYLLNCFACK+RSLDLIC K+ FL D
Sbjct: 180 RLEYHRNLMTRGVGDLEMENRKAEEWASQLQCWSLYLLNCFACKDRSLDLIC-KKVFLKD 238

Query: 267 LCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDC 326
           LC+MWGGL++H SPAGVGLIRILCYSK GRKNIAE  +V+  L NLSRSSDDWQY+GIDC
Sbjct: 239 LCDMWGGLISHTSPAGVGLIRILCYSKVGRKNIAELPKVVNTLGNLSRSSDDWQYIGIDC 298

Query: 327 LLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNK 386
           LL LLKDPDTRYKV++ AA +L+DL+EL SL D+  N+GE I++ LL        K   +
Sbjct: 299 LLLLLKDPDTRYKVLDVAASYLVDLIELRSLGDK-SNVGETISKVLL------NLKPNRE 351

Query: 387 KVQKA-LEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMK 445
           KV  A L+E+    V+RR ++K  ++SEEK+EE RVLV LIKQ+A H+F LGE+EEA +K
Sbjct: 352 KVGAALLQEV----VDRRNKDK--LLSEEKLEETRVLVSLIKQQANHMFRLGEVEEALLK 405

Query: 446 YTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505
           Y+EALGVCP R + ERMV+YSN+AQCH+LL+  D+AISD+TRALCLSNP N+H KSLWRR
Sbjct: 406 YSEALGVCPLRFRKERMVIYSNKAQCHILLKNADSAISDSTRALCLSNPANTHRKSLWRR 465

Query: 506 SQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK 565
           SQAYDMKG+ +ESLMDCIMFIN        + RVKIPY+AARMISKHM A W+F  ARSK
Sbjct: 466 SQAYDMKGMAKESLMDCIMFIN-------MTMRVKIPYHAARMISKHMEATWLFATARSK 518

Query: 566 ILSSPVNNVQESYGENKSGI---EEQRYCDMIRTMMEKK--NLISG 606
           +       + +  G+N++G    E+ R  +    MME +  NL+ G
Sbjct: 519 V-EKTTQELNQVGGDNENGGNHEEQPRDHEAKMMMMENRYNNLLHG 563

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567973|ref|XP_002524964.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223535799|gb|EEF37461.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/588 (62%), Positives = 448/588 (76%), Gaps = 18/588 (3%)

Query: 19  TCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFP 78
           TC NP CFFCTM EP+ SLRRA +A  F+EMPL+D Q+HVL LSG+WNIAMTQPDDP FP
Sbjct: 20  TCTNPFCFFCTMNEPDPSLRRAKIAQSFQEMPLKDGQEHVLVLSGIWNIAMTQPDDPEFP 79

Query: 79  ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP 138
           +LGIF CM  LI +G+ +R+WLL+DQNIYIPYYAAH+IGSYTMNK EFA+KAV SGV+ P
Sbjct: 80  SLGIFECMGKLIDRGIKDREWLLKDQNIYIPYYAAHIIGSYTMNKAEFADKAVNSGVVLP 139

Query: 139 LMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNF 198
           LMELLRGKI+WVEQRVA+RALGH+AS++RTF ++  +E E+++LAM+LA  CL  VY  F
Sbjct: 140 LMELLRGKITWVEQRVAIRALGHIASHERTFGAIIEHEAEMIELAMELACNCLKTVYKRF 199

Query: 199 VAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLIC 258
           + VK   KR+KYH DLLTRG+GG E EN+KAEEWA QL+CWSL+LLNCFA KER LDLIC
Sbjct: 200 LGVK-YSKRVKYHCDLLTRGLGGKERENKKAEEWAIQLRCWSLHLLNCFAYKERCLDLIC 258

Query: 259 NKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDD 318
            KQ FL DLC MWGGL    SP G G++R LC SKTGR +IA  ++VI +LCN SRSS D
Sbjct: 259 KKQ-FLRDLCEMWGGLGKKTSPGGFGVLRTLCNSKTGRVSIANLEEVIVSLCNTSRSSHD 317

Query: 319 WQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY-- 376
            Q+M ID LL LLKD DTR+KVIE AALFL DLVE NSL +R K +GEAIT+ALL DY  
Sbjct: 318 CQHMAIDSLLSLLKDSDTRHKVIEIAALFLADLVEHNSLNERKKVIGEAITQALLQDYHK 377

Query: 377 -KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFW 435
            K    K K+K+ + AL+EIWELKVERRKRE+  ++SE++++E   L  L+KQE    FW
Sbjct: 378 IKYGFIKLKSKRTEDALKEIWELKVERRKREE--IVSEQELKEKTHLARLLKQEGNKKFW 435

Query: 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP 495
            G IE+A MKYT+AL +CP R + ER+VLYSNRAQ +LLLR PD+AISD TRALCLS+  
Sbjct: 436 SGYIEKAVMKYTKALDLCPLRMRKERIVLYSNRAQGYLLLRNPDSAISDTTRALCLSSAG 495

Query: 496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNA 555
           + H +SLWRRSQAYDMKG+ +ESLMDC+MFING  +S+ +     IP YAARMI+K +NA
Sbjct: 496 SPHSRSLWRRSQAYDMKGMAKESLMDCLMFINGRKKSKQSKNVKMIPSYAARMINKQVNA 555

Query: 556 LWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNL 603
            W+F  A+SK      N V+E   ++  G +      M+  M EKK +
Sbjct: 556 TWLFADAKSK------NKVEEKVDKSNGGEDA-----MMMDMKEKKGM 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450546|ref|XP_004143023.1| PREDICTED: uncharacterized protein LOC101221149 [Cucumis sativus]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/576 (62%), Positives = 446/576 (77%), Gaps = 12/576 (2%)

Query: 30  MEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSL 89
           M+E + + RRAG+   F E+P  DDQ HVL LS LW+IAM QP+   +P+LG+F CM+SL
Sbjct: 1   MKENHLATRRAGLKKCFNELPYSDDQDHVLVLSALWHIAMAQPNHKEYPSLGVFECMASL 60

Query: 90  ISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISW 149
           I +G+ +++WLLR+QNIYIPYYAAHVIGSYTM+K EFAEKAVKSGVIPPLMELLRGK+SW
Sbjct: 61  IQRGLKDKNWLLRNQNIYIPYYAAHVIGSYTMHKAEFAEKAVKSGVIPPLMELLRGKMSW 120

Query: 150 VEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLK 209
           VEQRV VRALGHLASY+ TF+++  YEEE+VK AM++AS+CLD+VY +FV   + + R K
Sbjct: 121 VEQRVTVRALGHLASYNSTFEALVEYEEEIVKWAMEIASSCLDLVYESFVGSSE-ENREK 179

Query: 210 YHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQ-EFLMDLC 268
           YH DLLTRG+GG E E++KAEEWA QLQCW L+L+ CFA K + L+LICN    FL DLC
Sbjct: 180 YHRDLLTRGIGGREIEDKKAEEWASQLQCWCLHLVKCFASKGKCLNLICNDNPNFLKDLC 239

Query: 269 NMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLL 328
            MWGGL N+ S  GVGLIRIL Y+K+ RK IAE K +++ LCNLSRSSDDWQY+GI+CLL
Sbjct: 240 GMWGGLSNYTSTGGVGLIRILSYNKSSRKFIAESKDIVQTLCNLSRSSDDWQYIGIECLL 299

Query: 329 FLLKDPDTRYKVIETAALFLIDLVELNSLLDRPK-NLGEAITRALLLDYKLTEQK--FKN 385
            LLKD  TRYKVIE AA +LIDLVE+ +L D+   NLGE+IT+ALL DY  TE K   KN
Sbjct: 300 LLLKDSQTRYKVIEIAAFYLIDLVEIRTLGDKTGINLGESITQALLSDYHQTETKLFLKN 359

Query: 386 KK-VQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAM 444
           KK +Q+ L EIW+LKVER+++EK  ++ EE +E+ + LV LIKQ+A  LF LGE + A  
Sbjct: 360 KKNLQRVLTEIWDLKVERKRKEK--LLGEETLEKKKALVNLIKQQANELFRLGETKGALR 417

Query: 445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504
           KY E L +CP + + +RMVL+SN++QCHLLLRE D AISD+TRALC SNP NSH KSLWR
Sbjct: 418 KYKEGLDICPLKLRKQRMVLHSNKSQCHLLLREADEAISDSTRALCYSNPTNSHSKSLWR 477

Query: 505 RSQAYDMKGLGRESLMDCIMFINGCIR-SETTSKRVKIPYYAARMISKHMNALWVFGGAR 563
           RSQAYDMKGL +ESLMDCIMF+NG ++  E  +KR+KIPY+AARMISK M A W+F  AR
Sbjct: 478 RSQAYDMKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATAR 537

Query: 564 SKILSSPVNNVQESYGENKSGIEEQRYCD-MIRTMM 598
            K L+S    V+++  E+ S    +R  + MIRT M
Sbjct: 538 LKKLASTTTQVKKA--EDSSNNSSERNGNTMIRTTM 571

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345504|ref|XP_003636817.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|358348873|ref|XP_003638466.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355502752|gb|AES83955.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355504401|gb|AES85604.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/592 (60%), Positives = 454/592 (76%), Gaps = 28/592 (4%)

Query: 20  CANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPA 79
           C  PCCFFC M+E N SLR+A +++ FKEM  +D+Q+HVL LSGLWNIAMTQP+DP FP+
Sbjct: 36  CNTPCCFFCIMKEQNPSLRKAKISTCFKEMHQRDNQEHVLVLSGLWNIAMTQPNDPEFPS 95

Query: 80  LGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPL 139
           LGIF+CM+ LI+KG+ N++WLL++QNIYIPYYAAH+IGSYTMNK EF++ AVKSGVIPPL
Sbjct: 96  LGIFSCMAKLITKGIKNKNWLLQNQNIYIPYYAAHIIGSYTMNKEEFSQIAVKSGVIPPL 155

Query: 140 MELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFV 199
           +ELL+GKISWVEQRVAVRALGHLASY+ TF+SVA YE E+VKL M LASTCL+ +YV FV
Sbjct: 156 LELLKGKISWVEQRVAVRALGHLASYNSTFESVAEYETELVKLTMNLASTCLEKIYVEFV 215

Query: 200 AVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKE--RSLDLI 257
           +V   K+R++YH +LLTRG+G LE EN+KAEEWA QLQCWS+YLLNCFACK+  +SL+LI
Sbjct: 216 SV---KRRVEYHRNLLTRGLGDLEMENRKAEEWASQLQCWSIYLLNCFACKDYNKSLNLI 272

Query: 258 CNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSD 317
           C K+EFL DLC+MWGGL+N+ SP G GLIRILCY+  GRK I E  +V++ LCNLSRS D
Sbjct: 273 C-KKEFLNDLCDMWGGLMNNTSPGGFGLIRILCYNNIGRKKIVELPKVVKTLCNLSRSCD 331

Query: 318 DWQYMGIDCLLFLLKDPDTRYKVI---ETAALFLIDLVELNSLLDRPKNLGEAITRA--L 372
           DWQY+GIDCLL LLKD +TRYKVI         L+DL+EL  L D+  N+G+ IT+   L
Sbjct: 332 DWQYLGIDCLLLLLKDENTRYKVIIDDVDVVSCLVDLIELRKLGDK-SNVGDIITKVLEL 390

Query: 373 LLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKH 432
           LL++      +K      +L    ++ + RR +EK  +MSE K+EE RV    IK++A H
Sbjct: 391 LLEHNNNHHHYKFSTNLISL----DIMMVRRNKEK--LMSEVKLEEKRVTAKFIKRQANH 444

Query: 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492
           +F LG++EEA +KY EAL +CP R +NERMV+YSN+A+C+LLL+ PD+AISD+TRALCLS
Sbjct: 445 MFSLGKVEEALLKYNEALNICPLRYRNERMVIYSNKAECNLLLKNPDSAISDSTRALCLS 504

Query: 493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH 552
           NP N+H KSLWRRSQAYDMKG+ +ESLMDCIMF+NG ++S   +K VK+ Y+AA+M  K 
Sbjct: 505 NPTNTHGKSLWRRSQAYDMKGMAKESLMDCIMFMNGFVKS-NENKHVKVSYHAAKMFCKQ 563

Query: 553 MNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLI 604
           M+A W+FG   SK  S  V+NV     EN         CD    MMEK++ +
Sbjct: 564 MDATWLFGDVCSK--SKVVDNVNIPLVENLP-------CDHKMMMMEKRSFL 606

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074227|ref|XP_002304309.1| predicted protein [Populus trichocarpa] gi|222841741|gb|EEE79288.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/540 (65%), Positives = 429/540 (79%), Gaps = 10/540 (1%)

Query: 30  MEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSL 89
           M E + SLR+A +A  FKEMPL+DDQ+HVL L G+WNIAMTQPDDP FP+LG+F+CM  L
Sbjct: 1   MNEQDPSLRKAKLARCFKEMPLRDDQEHVLVLRGIWNIAMTQPDDPEFPSLGVFDCMGKL 60

Query: 90  ISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISW 149
           I + VN+++WLLRDQNIYIPYYAAH+IGSYTMNKV+FAEKAVKS V+ PL+ELLRGKISW
Sbjct: 61  IQRAVNDKEWLLRDQNIYIPYYAAHIIGSYTMNKVQFAEKAVKSNVVLPLIELLRGKISW 120

Query: 150 VEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLK 209
           VEQRVAVR+LGHLAS+ RTF+++A +E E++KLAM++A  C+  VY  F+ VKD  KR+K
Sbjct: 121 VEQRVAVRSLGHLASHARTFEAIAEHEVEIIKLAMEIACNCIKTVYRRFIGVKD-SKRVK 179

Query: 210 YHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCN 269
           YHSDLLT G+G LE EN+KAEEWA QLQCWSL+LLNCFACK RSL+LICNK  FL +L  
Sbjct: 180 YHSDLLTTGLGDLEIENRKAEEWASQLQCWSLHLLNCFACKGRSLNLICNKH-FLKELGG 238

Query: 270 MWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLF 329
           MWGGL N  SP G+G IR LC  KTGR+++A  K+VIE LCN+SRSSDDWQ M IDCLL 
Sbjct: 239 MWGGLANCASPGGIGCIRTLCNFKTGRESLANSKEVIEILCNISRSSDDWQCMAIDCLLL 298

Query: 330 LLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY---KLTEQKFKNK 386
           LLKD DTRY VI TAAL L DLVEL SL +R K +GEAIT+ALL DY   K  + K  ++
Sbjct: 299 LLKDTDTRYIVINTAALSLADLVELRSLNER-KKVGEAITQALLQDYHKIKYGDLKLSSQ 357

Query: 387 KVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKY 446
             ++AL+E W+L VERRKRE+  +MSEE+++E + LVG++KQE    FW G IE+A  +Y
Sbjct: 358 DAERALKETWDLMVERRKREE--LMSEEELKERKNLVGMLKQEGNKKFWSGHIEKAVTRY 415

Query: 447 TEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506
           T+AL +CPS+ + ER+VLYSNRAQ +LLL  P+A ISD TRALCLS   N H KSLWRR+
Sbjct: 416 TKALDLCPSKMRKERIVLYSNRAQGYLLLNNPEAVISDTTRALCLSTTANPHRKSLWRRA 475

Query: 507 QAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGG-ARSK 565
           QAYDMKGL +ESLMDC+MFI+G +++E T K  KIPY+A RMI K MNA W+F   A+SK
Sbjct: 476 QAYDMKGLAKESLMDCLMFIHGRMKAEKT-KNAKIPYFATRMIHKQMNATWLFATVAKSK 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
TAIR|locus:2167796	588	AT5G43120 [Arabidopsis thalian	0.874	0.913	0.562	1e-164
TAIR|locus:2184073	631	AT5G10200 [Arabidopsis thalian	0.872	0.849	0.542	1.2e-152
TAIR|locus:2083068	501	AT3G50030 [Arabidopsis thalian	0.374	0.459	0.635	1.3e-137
UNIPROTKB|Q3ZBR5	292	TTC1 "Tetratricopeptide repeat	0.151	0.318	0.364	6e-07
UNIPROTKB|F1RR38	292	TTC1 "Uncharacterized protein"	0.151	0.318	0.343	2.2e-06
UNIPROTKB|Q99614	292	TTC1 "Tetratricopeptide repeat	0.151	0.318	0.343	2.9e-06
UNIPROTKB|A5PKJ5	929	UNC45A "Uncharacterized protei	0.167	0.110	0.330	5.8e-06
UNIPROTKB|F1P0Z6	839	F1P0Z6 "Uncharacterized protei	0.171	0.125	0.342	6.5e-06
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.151	0.318	0.322	8.1e-06
UNIPROTKB|Q9H3U1	944	UNC45A "Protein unc-45 homolog	0.167	0.109	0.339	9.8e-06

TAIR|locus:2167796 AT5G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 310/551 (56%), Positives = 405/551 (73%)

Query:    21 ANPCCFFCTMEEPNSSLRRAGVASFFKEMPL-QDDQQHVLALSGLWNIAMTQPDDPLFPA 79
             + PCCF C MEE +  +R+A +    ++M + +DD +  L LS +W  AM  P++P  P+
Sbjct:    21 SRPCCFSCAMEEKDPCVRKAWLELSLRDMHMIRDDTELALTLSFIWRYAMADPENPELPS 80

Query:    80 LGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPL 139
             LG+F CM+ L+ KG+ + +W++  QN+Y+PYYAAH+IGSYTM K +FA KAV+SGVI PL
Sbjct:    81 LGVFECMTRLMKKGLEDVEWVMTGQNVYVPYYAAHIIGSYTMKKPDFATKAVESGVIAPL 140

Query:   140 MELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFV 199
             +EL+R K+SWVEQRV VRALGHLASY+ TF++VA YE+EVV+LAM++A TC+DVVY  FV
Sbjct:   141 LELMRRKMSWVEQRVVVRALGHLASYETTFEAVAAYEDEVVRLAMEIAMTCVDVVYEEFV 200

Query:   200 AVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICN 259
             +V++++ R++YHSDLLTRG+GGLE E++KAEEWA QLQCWSL+LLNCFA K++ + LICN
Sbjct:   201 SVQEKEGRVRYHSDLLTRGLGGLEMEDRKAEEWASQLQCWSLHLLNCFAYKQKCISLICN 260

Query:   260 KQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDW 319
             K  FL +L  MWGGLVNH SP+G+GLIRILCYSK GR++++  +++I +LCNLSRSSDDW
Sbjct:   261 KT-FLKELSQMWGGLVNHTSPSGIGLIRILCYSKQGRRHVSGSREMILSLCNLSRSSDDW 319

Query:   320 QYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLT 379
             QYMGIDCLL LLKD  TRY V+E +  +L+DLVE+ +L  R KNLG+ IT+ LL+ Y  T
Sbjct:   320 QYMGIDCLLLLLKDQATRYNVLEMSLFYLVDLVEVKALNVR-KNLGDRITKVLLMHYCKT 378

Query:   380 EQKFK-NKKVQKALEEIWE-LXXXXXXXXXXXXXXXXXXXXXXXLVGLIKQEAKHLFWLG 437
             ++    + K QKAL+E+W                          +V LIKQ+A  L  +G
Sbjct:   379 KKGCAYSHKAQKALKELWRNKVERRRRERKFMSKNQDFLRETSVVVYLIKQQANQLLHVG 438

Query:   438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497
             +IE A   YTEA+G+CP + + +RM LYS R +C+LLL + DAAISD TRALCLS P NS
Sbjct:   439 DIEGAIKCYTEAIGLCPLKLRRKRMNLYSERGECYLLLGDVDAAISDCTRALCLSEPVNS 498

Query:   498 HCKSLWRRSQAYDMKGLGRESLMDCIMFING-CIRSETTSKRVKIPYYAARMISKHMNAL 556
             H KSLW RS+AYD+KGL RESLMDCIMF+NG C R         IPYYAA+MISK M A 
Sbjct:   499 HGKSLWTRSRAYDIKGLSRESLMDCIMFVNGRCFRGN-------IPYYAAQMISKQMEAT 551

Query:   557 WVFGGAR-SKI 566
             W+F  AR SK+
Sbjct:   552 WLFEKARASKL 562

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184073 AT5G10200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
 Identities = 300/553 (54%), Positives = 382/553 (69%)

Query:    16 NKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDP 75
             + + C  P CFFC M+E N S RR+ +  FF+++P QDD   VL +SGLWN AM  P+DP
Sbjct:     5 SSQECPYPGCFFCVMKEGNPSKRRSCILKFFRDLPSQDDDGQVLPISGLWNTAMAHPNDP 64

Query:    76 LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV 135
              F  LGIF CMS+LI KG+ NR WL  DQNIYIPYYAAH+IGSYTMN  EFAE+AV++GV
Sbjct:    65 EFIELGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAERAVEAGV 124

Query:   136 IPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVY 195
             IPPL+ELLRG+++WVEQRVAVRALGHLA+Y  TF +VA + E +++LA+QLA + L++VY
Sbjct:   125 IPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADHGE-ILELAIQLAMSSLEIVY 183

Query:   196 VNFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLD 255
              +F    DR  RL YH DLLTRG+GG+E E++KAEEWA QLQCWSL L+NCFA K   L 
Sbjct:   184 SHFYQYPDR--RLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLP 241

Query:   256 LICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRS 315
              +C K EFL++L  MWGGLVN NSPAG+GL+R +C  K GR  ++ C  +IE LCN++RS
Sbjct:   242 TLC-KPEFLVNLPVMWGGLVNENSPAGIGLLRTICQHKLGRGPVSACAGMIEALCNIARS 300

Query:   316 SDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLD 375
             SDDWQYM I+CLL+LL+DP+T +KVI+ A   L+DL E+ +L D  K LG++I   L   
Sbjct:   301 SDDWQYMAIECLLWLLQDPNTSHKVIDKAVPTLVDLAEITNLGDH-KKLGDSIVSVL--- 356

Query:   376 YKLTEQKFKNKKVQKALEEIWELXXXXXXXXXXXXXXXXXXXXXXXLVGLIKQEAKHLFW 435
                 E      + ++ +EE                           LV  +K E   LF 
Sbjct:   357 ---QECSSMGNRSRELIEETVN-SRQRLKWEKSMPKEDLHIKQAAALV--VKLEGNSLFS 410

Query:   436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP 495
              G+I  AA KY+EAL +CP R K ER+VLYSNRAQCHLLL++P  AISDATRALCL NP 
Sbjct:   411 SGDIAGAAEKYSEALSLCPMRSKKERVVLYSNRAQCHLLLQQPLVAISDATRALCLHNPV 470

Query:   496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS---ETTSKRVKIPYYAARMISKH 552
             N H KSLWRR+QAYDM GL +ESL+D I+FIN C +S   + + ++ K+P YA R++ K 
Sbjct:   471 NRHAKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSMRQNKVPDYAERLVKKQ 530

Query:   553 MNALWVFGGARSK 565
             M A W+F  A  K
Sbjct:   531 MRAAWLFKEAALK 543

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2083068 AT3G50030 [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 1.3e-137, Sum P(3) = 1.3e-137
 Identities = 148/233 (63%), Positives = 187/233 (80%)

Query:    20 CANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPLFPA 79
             C NP CFFC+M++ N   RR+ +A+ FKE+P  + + HVL LSGLWNIAM++PDDP FP+
Sbjct:     9 CTNPSCFFCSMKDTNPFRRRSKLAAIFKEIPRTESKDHVLVLSGLWNIAMSEPDDPEFPS 68

Query:    80 LGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV--IP 137
             LG+F CMS LI K + N  WLL+DQNI+IPYYAAH+IGSY MNK + A  AV S V  +P
Sbjct:    69 LGLFECMSKLIHKSIKNSVWLLKDQNIFIPYYAAHIIGSYVMNKEDLAAMAVDSKVFLVP 128

Query:   138 PLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVN 197
              L+ELLRGKISWVEQR A RALGHLAS++++F++V+++EEE+VKLAM++A+ CL  VY +
Sbjct:   129 ALLELLRGKISWVEQRAAARALGHLASHEKSFEAVSLFEEEIVKLAMEIATNCLKNVYKS 188

Query:   198 FVAVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACK 250
             F+ V+DR  RLKY SDLLTRG+GG E ENQKAEEW  QLQCWSL+LLNCFA +
Sbjct:   189 FLGVEDRG-RLKYQSDLLTRGLGGFETENQKAEEWGIQLQCWSLFLLNCFASR 240

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZBR5 TTC1 "Tetratricopeptide repeat protein 1" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 35/96 (36%), Positives = 55/96 (57%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             +K+E    F  G+  EA   YT AL  CPS  + +R VL+SNRA   +   + + AISD 
Sbjct:   119 LKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEMAISDC 178

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             ++A+ L NP  S+ +++ RR++ Y+      E+L D
Sbjct:   179 SKAIQL-NP--SYIRAILRRAELYEKTDKLDEALED 211

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|F1RR38 TTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 33/96 (34%), Positives = 56/96 (58%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             +K+E    F  G+  EA   YT AL +CPS  + +R +L+SNRA   +   + + AISD 
Sbjct:   119 LKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDC 178

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             ++A+ L+  PN + +++ RR++ Y+      E+L D
Sbjct:   179 SKAIQLN--PN-YIRAILRRAELYEKTDKLDEALED 211

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 33/96 (34%), Positives = 56/96 (58%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             +K+E    F  G+  EA   Y+ AL +CPS  + ER +L+SNRA   +   + + AI+D 
Sbjct:   119 LKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDC 178

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             ++A+ L NP  S+ +++ RR++ Y+      E+L D
Sbjct:   179 SKAIQL-NP--SYIRAILRRAELYEKTDKLDEALED 211

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

UNIPROTKB|A5PKJ5 UNC45A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 37/112 (33%), Positives = 65/112 (58%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             ++++   LF  G+ E A   YT+ALG+  + P+++  +L+ NRA CHL L + + A ++A
Sbjct:     9 LRKDGNELFKCGDYEGALTAYTQALGL-GATPQDQA-ILHRNRAACHLKLEDYEKAETEA 66

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
             T+A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct:    67 TKAI---EKDGGDIKALYRRSQA--LEKLGR--LDQAVLDLQRCVSLEPKNK 111

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

UNIPROTKB|F1P0Z6 F1P0Z6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 39/114 (34%), Positives = 61/114 (53%)

Query:   424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS 483
             G +++    LF  G+   A   YT+AL +C + P  ER VL+ NRA C+L L +   A +
Sbjct:    12 GQLRERGNALFQAGDHAAALAAYTQALSLCQAEP--ERAVLHRNRAACYLKLEDYAKAEA 69

Query:   484 DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
             DA++A+          K+L+RRSQA  ++ LGR  L   +  +  C+  E  +K
Sbjct:    70 DASKAI---EADGRDMKALFRRSQA--LQKLGR--LDQAVSDLQRCVSLEPKNK 116

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 31/96 (32%), Positives = 57/96 (59%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             +K+E    F  G+  EA   Y++AL +CP+  + +R VL+SNRA   +   + + AI+D 
Sbjct:   119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDC 178

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
             ++A+ L NP  ++ +++ RR++ Y+      E+L D
Sbjct:   179 SKAIQL-NP--TYIRAILRRAELYEKTDKLDEALED 211

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H3U1 UNC45A "Protein unc-45 homolog A" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 38/112 (33%), Positives = 64/112 (57%)

Query:   426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
             +++E   LF  G+   A   YT+ALG+  + P+++  VL+ NRA CHL L + D A ++A
Sbjct:    24 LRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQA-VLHRNRAACHLKLEDYDKAETEA 81

Query:   486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
             ++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct:    82 SKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLQRCVSLEPKNK 126

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	614
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-05

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-PDAAISDA 485
           K     LF LG+ +EA   Y +AL + P   +      Y N A  +L L +  + A+ D 
Sbjct: 7   KNLGNALFKLGDYDEAIEAYEKALELDPDNAE-----AYYNLALAYLKLGKDYEEALEDL 61

Query: 486 TRALCLS 492
            +AL L 
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
                  + LG+ +EA   Y +AL + P          Y N A  +  L + + A+ D  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNA-----DAYYNLAAAYYKLGKYEEALEDYE 58

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           +AL L +P   + K+ +    AY   G   E+L  
Sbjct: 59  KALEL-DP--DNAKAYYNLGLAYYKLGKYEEALEA 90

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD- 521
           V YSNRA CH  L + +  + D T AL L      + K+L RR+ AYD  G   ++L+D 
Sbjct: 161 VYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRANAYDGLGKYADALLDL 217

Query: 522 CIMFINGCIRSETTSKRVK 540
               I    R+E +++ V+
Sbjct: 218 TASCIIDGFRNEQSAQAVE 236

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	614
KOG4234	271	consensus TPR repeat-containing protein [General f	99.81
KOG0553	304	consensus TPR repeat-containing protein [General f	99.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.66
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.45
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.44
PRK15359	144	type III secretion system chaperone protein SscB;	99.41
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.37
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.34
PRK11189	296	lipoprotein NlpI; Provisional	99.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.23
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.19
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.17
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.13
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.11
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.08
KOG4555	175	consensus TPR repeat-containing protein [Function	99.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.08
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
PRK12370	553	invasion protein regulator; Provisional	98.97
KOG1126	638	consensus DNA-binding cell division cycle control	98.96
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.93
PLN02789	320	farnesyltranstransferase	98.92
PRK12370	553	invasion protein regulator; Provisional	98.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.87
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.84
PRK15359	144	type III secretion system chaperone protein SscB;	98.83
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.77
PRK11189	296	lipoprotein NlpI; Provisional	98.77
PLN02789	320	farnesyltranstransferase	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.76
KOG1126	638	consensus DNA-binding cell division cycle control	98.75
KOG1125	579	consensus TPR repeat-containing protein [General f	98.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.68
PRK10803	263	tol-pal system protein YbgF; Provisional	98.66
PRK15331	165	chaperone protein SicA; Provisional	98.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.62
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.61
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.61
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.6
PF13512	142	TPR_18: Tetratricopeptide repeat	98.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.54
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.53
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.52
KOG1310	758	consensus WD40 repeat protein [General function pr	98.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.47
PF13371	73	TPR_9: Tetratricopeptide repeat	98.44
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.4
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.39
KOG1125	579	consensus TPR repeat-containing protein [General f	98.38
PF13371	73	TPR_9: Tetratricopeptide repeat	98.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.36
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.36
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.31
KOG0553	304	consensus TPR repeat-containing protein [General f	98.3
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.29
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.23
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.23
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.22
PF12688	120	TPR_5: Tetratrico peptide repeat	98.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.18
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.16
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.15
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.14
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.13
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.12
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.11
PRK14574	822	hmsH outer membrane protein; Provisional	98.1
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.04
KOG2076	895	consensus RNA polymerase III transcription factor	98.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.99
KOG1129	478	consensus TPR repeat-containing protein [General f	97.98
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.95
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.95
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.94
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.94
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.94
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.92
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.91
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.91
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.89
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.89
KOG2076	895	consensus RNA polymerase III transcription factor	97.88
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.86
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.86
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.81
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.76
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.74
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.71
PRK14574	822	hmsH outer membrane protein; Provisional	97.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.66
KOG2003	840	consensus TPR repeat-containing protein [General f	97.65
KOG2003	840	consensus TPR repeat-containing protein [General f	97.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.62
PRK11906	458	transcriptional regulator; Provisional	97.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.58
KOG4234	271	consensus TPR repeat-containing protein [General f	97.57
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.53
PRK10803	263	tol-pal system protein YbgF; Provisional	97.53
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.53
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.5
PRK11906	458	transcriptional regulator; Provisional	97.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.44
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.44
PF12688	120	TPR_5: Tetratrico peptide repeat	97.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.38
KOG4555	175	consensus TPR repeat-containing protein [Function	97.36
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.34
PF13512	142	TPR_18: Tetratricopeptide repeat	97.33
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.31
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.25
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.18
PF13431	34	TPR_17: Tetratricopeptide repeat	97.15
PF13431	34	TPR_17: Tetratricopeptide repeat	97.12
PRK10941	269	hypothetical protein; Provisional	97.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.03
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.99
PF13428	44	TPR_14: Tetratricopeptide repeat	96.97
KOG1129	478	consensus TPR repeat-containing protein [General f	96.93
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.78
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.76
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.7
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.65
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.37
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.32
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.02
PF13428	44	TPR_14: Tetratricopeptide repeat	96.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.96
PLN03218	1060	maturation of RBCL 1; Provisional	95.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.85
PRK15331	165	chaperone protein SicA; Provisional	95.82
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.81
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.8
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.79
PLN03218	1060	maturation of RBCL 1; Provisional	95.77
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.71
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.58
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.54
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.4
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.3
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.26
PRK04841	903	transcriptional regulator MalT; Provisional	95.24
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.08
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.08
PLN03077	857	Protein ECB2; Provisional	95.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.79
PRK04841	903	transcriptional regulator MalT; Provisional	94.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.73
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.23
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.2
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.13
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.08
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.96
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.92
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.83
PLN03077	857	Protein ECB2; Provisional	93.83
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.73
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.62
COG2912	269	Uncharacterized conserved protein [Function unknow	93.59
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.3
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.25
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.13
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.89
PRK10941	269	hypothetical protein; Provisional	92.85
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.48
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.09
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.81
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.42
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.31
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.28
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.25
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.77
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	90.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.03
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.94
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	89.65
KOG1586	288	consensus Protein required for fusion of vesicles	89.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	89.4
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.73
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.63
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	88.18
KOG2471	696	consensus TPR repeat-containing protein [General f	88.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	87.67
KOG3364	149	consensus Membrane protein involved in organellar	87.33
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	86.33
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.19
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.76
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	84.5
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	83.68
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	83.1
COG3898	531	Uncharacterized membrane-bound protein [Function u	82.88
KOG1586	288	consensus Protein required for fusion of vesicles	82.82
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.16
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.03
KOG3364	149	consensus Membrane protein involved in organellar	81.34
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	81.12
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	80.83
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	80.8
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	80.42
KOG1915	677	consensus Cell cycle control protein (crooked neck	80.32
KOG2471	696	consensus TPR repeat-containing protein [General f	80.07

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=7.6e-19  Score=172.48  Aligned_cols=156  Identities=32%  Similarity=0.395  Sum_probs=134.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH
Q 047433          404 KREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS  483 (614)
Q Consensus       404 erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~  483 (614)
                      +.++  .|++++...++..+..+|..||.+|+.|+|++|...|++||++||..+.++++++|+|||.|+++++.++.||.
T Consensus        78 e~E~--i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~  155 (271)
T KOG4234|consen   78 EIEK--IFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE  155 (271)
T ss_pred             HHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence            6677  89999998899999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh-----hcchHHHHHHHHHHHHHHHHH
Q 047433          484 DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK-----RVKIPYYAARMISKHMNALWV  558 (614)
Q Consensus       484 D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~-----k~kl~~y~~r~i~Kqmea~~l  558 (614)
                      ||++||+|+|.   +.+|+.|||.+|..+.+|++|+.||.+.++.+|.......     ..++...-.+|....|.+...
T Consensus       156 dcsKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKd  232 (271)
T KOG4234|consen  156 DCSKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKD  232 (271)
T ss_pred             HHHhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   9999999999999999999999999999999996543221     123444444555555666555


Q ss_pred             Hhhhhh
Q 047433          559 FGGARS  564 (614)
Q Consensus       559 F~~Ai~  564 (614)
                      |...+-
T Consensus       233 lGN~iL  238 (271)
T KOG4234|consen  233 LGNFIL  238 (271)
T ss_pred             hhhhhc
Confidence            555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=4.7e-19  Score=182.46  Aligned_cols=108  Identities=29%  Similarity=0.283  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~  497 (614)
                      +....|+.+|.+||.+.+.++|++|+..|++||+++|.+     +++|.|||++|.+||.|+.||+||..||.+||.   
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---  147 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---  147 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---
Confidence            455699999999999999999999999999999999999     999999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +.|+|-|+|.||+.+|++++|+..|+++|+++|+.+
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            999999999999999999999999999999999644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.73  E-value=1.5e-16  Score=166.20  Aligned_cols=254  Identities=17%  Similarity=0.131  Sum_probs=187.5

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHH---
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL---  373 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl---  373 (614)
                      .|+.+|-.+|+.-|+-=               +-+-.|+|+|++|+++..+++||+.+.+|+++       |+.+++   
T Consensus        56 DALt~yHaAve~dp~~Y---------------~aifrRaT~yLAmGksk~al~Dl~rVlelKpD-------F~~ARiQRg  113 (504)
T KOG0624|consen   56 DALTHYHAAVEGDPNNY---------------QAIFRRATVYLAMGKSKAALQDLSRVLELKPD-------FMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHcCCchhH---------------HHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-------HHHHHHHhc
Confidence            47888888998887632               33456999999999999999999999999999       666655   


Q ss_pred             -------------Hhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 047433          374 -------------LDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI  439 (614)
Q Consensus       374 -------------~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdy  439 (614)
                                   .||..+.. .|++....++-.++...                      ..-..+.++...++..||+
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~----------------------~e~~~l~~ql~s~~~~GD~  171 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI----------------------QEHWVLVQQLKSASGSGDC  171 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH----------------------HHHHHHHHHHHHHhcCCch
Confidence                         35555444 44443333322221111                      1222567777888999999


Q ss_pred             HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433          440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL  519 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL  519 (614)
                      ..||+..++.|+++|++     +.+|.-||.||+..|++..||.|.+.|-+|..+   ++.++|..++.++..|+.++++
T Consensus       172 ~~ai~~i~~llEi~~Wd-----a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---nTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  172 QNAIEMITHLLEIQPWD-----ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---NTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             hhHHHHHHHHHhcCcch-----hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---chHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999     999999999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCChHhhcchHHHHH-HHHHHHHHH------HHHHhhhhh-------cCCCCCCCCccCCcCCcccch
Q 047433          520 MDCIMFINGCIRSETTSKRVKIPYYAA-RMISKHMNA------LWVFGGARS-------KILSSPVNNVQESYGENKSGI  585 (614)
Q Consensus       520 ~df~kALkl~P~~~D~~~k~kl~~y~~-r~i~Kqmea------~~lF~~Ai~-------k~~~~~~~~~~e~~~~~~~g~  585 (614)
                      ...++||+++|     +++.++++|.. +.+.|.++.      ...|.+.++       ..+..++...+.......+..
T Consensus       244 ~~iRECLKldp-----dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~  318 (504)
T KOG0624|consen  244 KEIRECLKLDP-----DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR  318 (504)
T ss_pred             HHHHHHHccCc-----chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence            99999999976     55677776643 223333321      122333322       233334445555445556666


Q ss_pred             hhhHHHHHHHHHHhcccccCCc
Q 047433          586 EEQRYCDMIRTMMEKKNLISGK  607 (614)
Q Consensus       586 ~eQ~~dD~iral~~~~~~~~g~  607 (614)
                      ..+.+.++|+...+--++.|..
T Consensus       319 ~d~~~~eAiqqC~evL~~d~~d  340 (504)
T KOG0624|consen  319 EDEQFGEAIQQCKEVLDIDPDD  340 (504)
T ss_pred             ccCCHHHHHHHHHHHHhcCchH
Confidence            6677777777666666666653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.7e-15  Score=165.30  Aligned_cols=105  Identities=26%  Similarity=0.238  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .++.+...+.+||.+|+.|+|..|+..||+||..+|++     +.+|+|||.||.++|.+..|++||+.+|+++|+   +
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~  425 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---F  425 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---H
Confidence            34467889999999999999999999999999999999     999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .++|+|.|.|+..+.+|+.|++.|+++++++|+
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            999999999999999999999999999999884

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.7e-15  Score=161.54  Aligned_cols=145  Identities=20%  Similarity=0.180  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------CcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR----------PKNERMVLYSNRAQCHLLLREPDAAISDATR  487 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~----------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~  487 (614)
                      +++..|...++.||.+|+.|+|..|+..|.+|+..-+..          ....+..+|+|+|.||+|+++|.+||..|++
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            466789999999999999999999999999999876542          1235678999999999999999999999999


Q ss_pred             HHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433          488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       488 ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~  567 (614)
                      +|+++|+   |.||+||||+|+..+|+|+.|..+|++++++.|++.+  ++..+..+..+.....-.....|.+++.+..
T Consensus       283 vLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  283 VLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999   9999999999999999999999999999999997543  3444443333333322233566777776653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=6.6e-16  Score=170.06  Aligned_cols=289  Identities=14%  Similarity=0.069  Sum_probs=222.7

Q ss_pred             ccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHH
Q 047433          293 KTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITR  370 (614)
Q Consensus       293 ~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~  370 (614)
                      ..||  +|.+-|.++|+..|.||     -..-.++|++..-++.-....-+.+++..-|.+..-+      -++|..+..
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~fA-----iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAY------iNLGnV~ke  264 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCFA-----IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAY------INLGNVYKE  264 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCcee-----eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHH------hhHHHHHHH
Confidence            4566  68888999999999998     6667789999988888888888888887777776665      556655544


Q ss_pred             HHH-----Hhhhhhhh-ccCcHHHHHHHHHH------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047433          371 ALL-----LDYKLTEQ-KFKNKKVQKALEEI------WELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGE  438 (614)
Q Consensus       371 aLl-----~dy~~~~~-~p~n~e~~~aL~el------~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gd  438 (614)
                      +..     ..|..... .|+...+.-.+.-+      .++-..-.++..  .++       +.-..++.+.||++-..|+
T Consensus       265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~-------P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQ-------PNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcC-------CCchHHHhHHHHHHHhccc
Confidence            433     45665555 67777766555321      222212233333  333       3345578889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES  518 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA  518 (614)
                      ..+|+.+|.+||.++|+.     +.+.+|+|.+|..+|.+++|+..|..|++..|.   ...++-++|.+|..+|++++|
T Consensus       336 V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~---~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  336 VTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---FAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             hHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---hhhhhhhHHHHHHhcccHHHH
Confidence            999999999999999998     999999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHH
Q 047433          519 LMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMM  598 (614)
Q Consensus       519 L~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~  598 (614)
                      +..|++++.+.|.-.|+-.+..-.   ...+++-..+...|.+||.-.+.-...+.+-.....+.|+-.++++.+..++.
T Consensus       408 i~~YkealrI~P~fAda~~NmGnt---~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  408 IMCYKEALRIKPTFADALSNMGNT---YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK  484 (966)
T ss_pred             HHHHHHHHhcCchHHHHHHhcchH---HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence            999999999998776665554433   23455556677788888888777777788777778888999999999999999


Q ss_pred             hcccccCCcccccc
Q 047433          599 EKKNLISGKLCAIH  612 (614)
Q Consensus       599 ~~~~~~~g~~~~~~  612 (614)
                      .+|+|-.-+-|..|
T Consensus       485 lkPDfpdA~cNllh  498 (966)
T KOG4626|consen  485 LKPDFPDAYCNLLH  498 (966)
T ss_pred             cCCCCchhhhHHHH
Confidence            99999887777666

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=6e-16  Score=167.22  Aligned_cols=127  Identities=29%  Similarity=0.372  Sum_probs=108.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      +++.++.   .+.|..+|.+||.+|+.|+|++||.+|++||++||+.     +++|+|||+||..+|+|++.++||++||
T Consensus       105 a~~~e~~---~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----piFYsNraAcY~~lgd~~~Vied~TkAL  176 (606)
T KOG0547|consen  105 AMLKEER---LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----PIFYSNRAACYESLGDWEKVIEDCTKAL  176 (606)
T ss_pred             ccChHHH---HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----chhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence            4555443   5689999999999999999999999999999999999     9999999999999999999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHH
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH  552 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kq  552 (614)
                      +++|+   ++||++||+.|+..+|+++||+.|..-..-+.- -.    +..+.-.+.|.++++
T Consensus       177 El~P~---Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~-F~----n~s~~~~~eR~Lkk~  231 (606)
T KOG0547|consen  177 ELNPD---YVKALLRRASAHEQLGKFDEALFDVTVLCILEG-FQ----NASIEPMAERVLKKQ  231 (606)
T ss_pred             hcCcH---HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhh-cc----cchhHHHHHHHHHHH
Confidence            99999   999999999999999999999999877655521 11    223333566666655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-14  Score=160.72  Aligned_cols=303  Identities=12%  Similarity=-0.046  Sum_probs=223.0

Q ss_pred             hhHHHHhhhcccchhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhh-hhhccCCC
Q 047433          283 VGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVE-LNSLLDRP  361 (614)
Q Consensus       283 ~~~~~~~~~~~~~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLse-L~~Lg~~~  361 (614)
                      |||---|-...-|-.|+..|.++|...|.+.     -..--.|.|+.-.+.-.+.+.-|-|++..-+-++= +..||--.
T Consensus       154 inla~al~~~~~~~~a~~~~~~alqlnP~l~-----ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f  228 (966)
T KOG4626|consen  154 INLAAALVTQGDLELAVQCFFEALQLNPDLY-----CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF  228 (966)
T ss_pred             hhHHHHHHhcCCCcccHHHHHHHHhcCcchh-----hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence            3443333333444478888999999999887     56667788888777777788888888887776643 33344432


Q ss_pred             cCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 047433          362 KNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEE  441 (614)
Q Consensus       362 k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdyee  441 (614)
                      +..|+ +-.+++..++.++.+|+...+.-.|..+.+.- .+..+.-  ......+..++..|..+-+.|-.++.+|+.+-
T Consensus       229 ~~~Ge-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-~~~d~Av--s~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl  304 (966)
T KOG4626|consen  229 NAQGE-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-RIFDRAV--SCYLRALNLRPNHAVAHGNLACIYYEQGLLDL  304 (966)
T ss_pred             hhcch-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-hcchHHH--HHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence            33333 23344433333333787777777776655422 0122222  22222233445567778888888899999999


Q ss_pred             HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 047433          442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD  521 (614)
Q Consensus       442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~d  521 (614)
                      ||..|.+||++.|..     ..+|+|+|.++-..|+..+|...|++||.+.|+   +..+.+++|.++.++|++++|...
T Consensus       305 AI~~Ykral~~~P~F-----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e~A~~l  376 (966)
T KOG4626|consen  305 AIDTYKRALELQPNF-----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIEEATRL  376 (966)
T ss_pred             HHHHHHHHHhcCCCc-----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccchHHHHH
Confidence            999999999999999     999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcc
Q 047433          522 CIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       522 f~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~  601 (614)
                      |+++++..|+-..+.  ..+. ...+..++--.+...|.+|++.++.-.....+.++...+.|....++.+++|+|..||
T Consensus       377 y~~al~v~p~~aaa~--nNLa-~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  377 YLKALEVFPEFAAAH--NNLA-SIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHHhhChhhhhhh--hhHH-HHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            999999988655443  3333 2333444445677889999988877778888889999999999999999999999999


Q ss_pred             cccC
Q 047433          602 NLIS  605 (614)
Q Consensus       602 ~~~~  605 (614)
                      .|..
T Consensus       454 t~Ae  457 (966)
T KOG4626|consen  454 TFAE  457 (966)
T ss_pred             HHHH
Confidence            8854

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.57  E-value=4.4e-15  Score=155.22  Aligned_cols=106  Identities=27%  Similarity=0.256  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+..+.+++++||.+|++|.|++||.+|+++|.++|.+     +++|.|||.+|+++++|..|..||+.|+.||..   +
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y  164 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-----PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---Y  164 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC-----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---H
Confidence            35577789999999999999999999999999999999     999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +|||-|||.+...||+.+||.+|++.+|.+.|++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            9999999999999999999999999999999963

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=2.9e-14  Score=155.82  Aligned_cols=166  Identities=17%  Similarity=0.153  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..++.+||.+|..|||+.||..||+||.++|.+     .++|+||+.||.++|+|++|++|.++.++++|+   ++|+|
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n-----hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy   73 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN-----HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGY   73 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc-----cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHH
Confidence            4578999999999999999999999999999999     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK  582 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~  582 (614)
                      .|+|.++..+|+|++|+..|.+.|+.+|+++  .....+..-. +.....   ...|.       .+.-+..-.++....
T Consensus        74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~--~L~~gl~~a~-~~~~~~---~~~~~-------~p~~~~~l~~~p~t~  140 (539)
T KOG0548|consen   74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNK--QLKTGLAQAY-LEDYAA---DQLFT-------KPYFHEKLANLPLTN  140 (539)
T ss_pred             HHhHHHHHhcccHHHHHHHHHHHhhcCCchH--HHHHhHHHhh-hHHHHh---hhhcc-------CcHHHHHhhcChhhh
Confidence            9999999999999999999999999988422  2122222100 001000   11111       111122222333444


Q ss_pred             cchhhhHHHHHHHHHHhcccccCCccc
Q 047433          583 SGIEEQRYCDMIRTMMEKKNLISGKLC  609 (614)
Q Consensus       583 ~g~~eQ~~dD~iral~~~~~~~~g~~~  609 (614)
                      .......+-.++..++.+|...-+|.+
T Consensus       141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~  167 (539)
T KOG0548|consen  141 YSLSDPAYVKILEIIQKNPTSLKLYLN  167 (539)
T ss_pred             hhhccHHHHHHHHHhhcCcHhhhcccc
Confidence            445556777788888888877776654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=7.3e-14  Score=148.98  Aligned_cols=108  Identities=29%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .++..+.++++||.+|+.|+|..|.+.||+||.++|.+ .+..+.+|.|||.+.+++|+..+||.||+.|++|||.   +
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---y  320 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---Y  320 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---H
Confidence            34566789999999999999999999999999999995 7788999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .|||.+||.|+..++++++|++||++|+++..
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999965

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3e-13  Score=136.65  Aligned_cols=154  Identities=22%  Similarity=0.207  Sum_probs=123.9

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCC-----cchhHHHHHHH
Q 047433          402 RRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV--------CPSRP-----KNERMVLYSNR  468 (614)
Q Consensus       402 r~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel--------~P~~~-----~~~~a~lysNR  468 (614)
                      ...++.| .||+++.   .+....+.++||.+|+.|+|.+|+..|..||..        .|.+.     ......++.|.
T Consensus       161 qYq~e~W-qlsddeK---mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy  236 (329)
T KOG0545|consen  161 QYQRETW-QLSDDEK---MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNY  236 (329)
T ss_pred             hhccccc-cCCchHh---hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhH
Confidence            4466777 8887764   357778999999999999999999999999964        34431     13346789999


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHH
Q 047433          469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARM  548 (614)
Q Consensus       469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~  548 (614)
                      ++|+++.|+|.+++..|..+|..+|.   +.|||||||.|+....+..||.+||.++|+++|.-.. .....+.....|+
T Consensus       237 ~QC~L~~~e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas-vVsrElr~le~r~  312 (329)
T KOG0545|consen  237 CQCLLKKEEYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS-VVSRELRLLENRM  312 (329)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999   9999999999999999999999999999999884322 2234555566666


Q ss_pred             HHHHHHHHHHHhhhh
Q 047433          549 ISKHMNALWVFGGAR  563 (614)
Q Consensus       549 i~Kqmea~~lF~~Ai  563 (614)
                      ..|+.+..-.|++.+
T Consensus       313 ~ek~~edr~~~~kmf  327 (329)
T KOG0545|consen  313 AEKQEEDRLRCRKMF  327 (329)
T ss_pred             HHhhhHHHHHHHHhc
Confidence            666666655555543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=8.4e-12  Score=141.60  Aligned_cols=174  Identities=14%  Similarity=0.040  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|..++..|++++|+..|.++|+++|..     ...|.++|.++..+|++++|+.+++++++++|+   +..
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~  400 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPD  400 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence            456678888999999999999999999999999988     889999999999999999999999999999999   899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGE  580 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~  580 (614)
                      +|+.+|.++..+|++++|+.+|++++++.|++....  ..+. .+....++.-++...|.+++...+..+.....-+...
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~--~~la-~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~  477 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH--IQLG-VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL  477 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH--HHHH-HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999999999999999999999988533221  1111 1111222334455666766665544444333444455


Q ss_pred             cccchhhhHHHHHHHHHHhcccccC
Q 047433          581 NKSGIEEQRYCDMIRTMMEKKNLIS  605 (614)
Q Consensus       581 ~~~g~~eQ~~dD~iral~~~~~~~~  605 (614)
                      ...|..+++...+.+++...|+..+
T Consensus       478 ~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       478 LDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHccCHHHHHHHHHHHHhcCCcccc
Confidence            5566677777777788887776543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.46  E-value=9e-14  Score=150.88  Aligned_cols=131  Identities=21%  Similarity=0.161  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .++.++.++|.+|+.++|+.|+..|++||+++|+.     +.++.|||+++++.++|..|+.|+.+||+++|.   +.|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~   74 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----AIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKA   74 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----eeeechhhhhheeechhhhHHHHHHhhhhcCch---hhhe
Confidence            46689999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      |+|+|.+...++++.+|+.+|+....+.|+  ++++..++.      -++.+.....|+.++.-...
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn--d~~~~r~~~------Ec~~~vs~~~fe~ai~~~~~  133 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPN--DPDATRKID------ECNKIVSEEKFEKAILTPEG  133 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcC--cHHHHHHHH------HHHHHHHHHhhhhcccCCcc
Confidence            999999999999999999999999999994  566666766      44556666678888776543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.45  E-value=1.2e-12  Score=139.95  Aligned_cols=101  Identities=22%  Similarity=0.189  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..++.+|+.+|..|+|++|+..|++||+++|++     +.+|.|||.+|+++|++++|+.++++|+.++|.   +..+|+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~~   74 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAYL   74 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHH
Confidence            458889999999999999999999999999999     999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++|.+|+.+|+|++|+..|++++++.|++
T Consensus        75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         75 RKGTACMKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999953

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.7e-13  Score=140.55  Aligned_cols=104  Identities=25%  Similarity=0.207  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .|..+|+.||.+|+.++|..|+..||++|+..-.+ +...+++|+|||+|.+.+|+|..||.||.+|++++|.   |.|+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~Ka  155 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLKA  155 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhhh
Confidence            67899999999999999999999999999986553 6778999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      |||-|+|+++|.++.+|+..++..+..+
T Consensus       156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  156 YIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999998887763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.41  E-value=4.1e-12  Score=119.09  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|+|++|+..|.+++.++|.+     ..+|.++|.++..+|++++|+..|+++++++|+   +..++++
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~   97 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS-----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQ   97 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHH
Confidence            46678999999999999999999999999999     999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      +|.++..+|++++|+..|++++++.|++.+
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999996544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.37  E-value=6.7e-11  Score=135.97  Aligned_cols=285  Identities=9%  Similarity=-0.042  Sum_probs=174.7

Q ss_pred             cch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHH--
Q 047433          294 TGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAIT--  369 (614)
Q Consensus       294 ~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it--  369 (614)
                      .|+  .|+..++++++..|+-+     ..+..++.++...++.+.+...+++++...+|..++...      ++....  
T Consensus        89 ~g~~~~A~~~l~~~l~~~P~~~-----~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~------la~~l~~~  157 (656)
T PRK15174         89 SSQPDAVLQVVNKLLAVNVCQP-----EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFAL------HLRTLVLM  157 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH------HHHHHHHC
Confidence            565  79999999999999887     567778888889999999999999998888886665421      111110  


Q ss_pred             ---HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433          370 ---RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEM-RVLVGLIKQEAKHLFWLGEIEEAAM  444 (614)
Q Consensus       370 ---~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~-~~~A~~lK~~GN~lFk~GdyeeAI~  444 (614)
                         ......|..... .|++......+..+..    ..+.+..+.....-+... ..........|..++..|++++|+.
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~  233 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIATCLSFLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ  233 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence               000112222111 3444444332211111    001111000000000000 0001122345677888888888888


Q ss_pred             HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHH----HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433          445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDA----AISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM  520 (614)
Q Consensus       445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyee----AI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~  520 (614)
                      .|.+++++.|++     ..++.++|.+|..+|++++    |+..++++++++|+   +..++..+|.++..+|++++|+.
T Consensus       234 ~~~~al~~~p~~-----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~  305 (656)
T PRK15174        234 TGESALARGLDG-----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADALIRTGQNEKAIP  305 (656)
T ss_pred             HHHHHHhcCCCC-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHH
Confidence            888888888888     8888888888888888885    78888888888888   88888888888888888888888


Q ss_pred             HHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhc
Q 047433          521 DCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEK  600 (614)
Q Consensus       521 df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~  600 (614)
                      .+++++++.|++.+.  ...+. .+....++.-++...|..++...+..+.............|..+++...+.+++...
T Consensus       306 ~l~~al~l~P~~~~a--~~~La-~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        306 LLQQSLATHPDLPYV--RAMYA-RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHhCCCCHHH--HHHHH-HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            888888888853322  22111 111122333344555665555544332222222333456677777777777788877


Q ss_pred             cccc
Q 047433          601 KNLI  604 (614)
Q Consensus       601 ~~~~  604 (614)
                      |+..
T Consensus       383 P~~~  386 (656)
T PRK15174        383 ASHL  386 (656)
T ss_pred             hhhc
Confidence            7754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.37  E-value=3.2e-11  Score=136.87  Aligned_cols=254  Identities=7%  Similarity=-0.105  Sum_probs=174.4

Q ss_pred             hhHHHHHHHHHhh---cccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHH
Q 047433          297 KNIAECKQVIENL---CNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL  373 (614)
Q Consensus       297 ~aia~~~~~i~~l---c~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl  373 (614)
                      +|+..+.++++.-   ++.+     +.+..++.+...+++.+.+...+++++..-++.....      ..+|..      
T Consensus       312 ~A~~~~~~al~~~~~~~~~a-----~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~------~~la~~------  374 (615)
T TIGR00990       312 EAARAFEKALDLGKLGEKEA-----IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY------IKRASM------  374 (615)
T ss_pred             HHHHHHHHHHhcCCCChhhH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHH------
Confidence            6888888888753   5555     7788889999999999999998888877655443322      111111      


Q ss_pred             HhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047433          374 LDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC  453 (614)
Q Consensus       374 ~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~  453 (614)
                        |..      ..+...++..+....          .+       .+..+..+...|..++..|+|++|+..|+++++++
T Consensus       375 --~~~------~g~~~eA~~~~~~al----------~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~  429 (615)
T TIGR00990       375 --NLE------LGDPDKAEEDFDKAL----------KL-------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD  429 (615)
T ss_pred             --HHH------CCCHHHHHHHHHHHH----------Hh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence              100      011112222222111          11       11234578899999999999999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          454 PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       454 P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      |++     ..++.++|.++.++|++++|+..++++++++|+   +..+++.+|.++..+|++++|+..|++++++.|+..
T Consensus       430 P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       430 PDF-----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             ccC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence            999     899999999999999999999999999999999   999999999999999999999999999999998643


Q ss_pred             ChHhhcchHHH-----HHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcc
Q 047433          534 TTSKRVKIPYY-----AARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       534 D~~~k~kl~~y-----~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~  601 (614)
                      .... ...+.+     ..+..+...++...+.+++..++................|..++++..+.+++...+
T Consensus       502 ~~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       502 PMYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             cccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            3211 111101     011123334455667777666543332222333344455666666666666665554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=3.4e-11  Score=130.93  Aligned_cols=289  Identities=15%  Similarity=0.105  Sum_probs=192.0

Q ss_pred             HHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCc
Q 047433          287 RILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNL  364 (614)
Q Consensus       287 ~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~l  364 (614)
                      |.-||..+|.  +-|..|-++++..|.-+               -.|-.|..++..+++...+|-|++-+--++.= .+.
T Consensus       155 raAcY~~lgd~~~Vied~TkALEl~P~Y~---------------KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F-~n~  218 (606)
T KOG0547|consen  155 RAACYESLGDWEKVIEDCTKALELNPDYV---------------KALLRRASAHEQLGKFDEALFDVTVLCILEGF-QNA  218 (606)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhcCcHHH---------------HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhc-ccc
Confidence            6679999997  67888999999999877               22334777888888888888887766544332 111


Q ss_pred             -------------------------------HHHHHHHHHHhhhhhhh----cc---CcHHHHHHHHHHHHHHHHHHHHH
Q 047433          365 -------------------------------GEAITRALLLDYKLTEQ----KF---KNKKVQKALEEIWELKVERRKRE  406 (614)
Q Consensus       365 -------------------------------Ge~it~aLl~dy~~~~~----~p---~n~e~~~aL~el~~lkvEr~erE  406 (614)
                                                     ...++..-...|.....    .+   ..+....++..+.....|.....
T Consensus       219 s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a  298 (606)
T KOG0547|consen  219 SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKA  298 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHH
Confidence                                           11222222222222111    11   22223333333322110111111


Q ss_pred             Hh-----hcCCHHHH------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc
Q 047433          407 KM-----MMMSEEKV------EEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL  475 (614)
Q Consensus       407 k~-----~~ls~eel------~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL  475 (614)
                      ..     ..++...+      .+....+..+...|.-+|-.|++.+|-+.+.++|+++|..     ..+|..||..|+..
T Consensus       299 ~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-----~~lyI~~a~~y~d~  373 (606)
T KOG0547|consen  299 YDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-----NSLYIKRAAAYADE  373 (606)
T ss_pred             HHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-----chHHHHHHHHHhhh
Confidence            10     01111111      1123468889999999999999999999999999999998     78899999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHH
Q 047433          476 REPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNA  555 (614)
Q Consensus       476 GdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea  555 (614)
                      .+.++-..|++.|..+||.   ++..||.||+.+.-+++|++|+.||++++.++|.+.-+..+.+...|-   ..+-.+.
T Consensus       374 ~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr---~~k~~~~  447 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR---QHKIAES  447 (606)
T ss_pred             hccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH---HHHHHHH
Confidence            9999999999999999999   999999999999999999999999999999999655554333332222   2233344


Q ss_pred             HHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhccc
Q 047433          556 LWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       556 ~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~  602 (614)
                      ...|.+++.+=+..+...+--.....+++...++.+.+..+|.+-|.
T Consensus       448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            56788888877665554443333444455555555555667777766

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.32  E-value=1.4e-11  Score=128.25  Aligned_cols=103  Identities=17%  Similarity=0.032  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+.++|..+...|++++|+..|+++++++|++     +.+|+++|.++..+|++++|+..++++++++|+   +..+
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a  134 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYA  134 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            45679999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++++|.+++..|++++|+.+|+++++..|++
T Consensus       135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        135 YLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999853

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.8e-11  Score=123.45  Aligned_cols=99  Identities=22%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..++++||.+|....|..||..|++||.++|..     +.+|.|||.||+++++++.+..||.+|++++|+   .+|+
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~-----~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~   80 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV-----ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKA   80 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc-----chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHH
Confidence            56789999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +|-+|+++.....|++|+..++++..+
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999999999655

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.23  E-value=1.7e-10  Score=104.43  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+......|..++..|++++|+..|++++..+|++     ..++.++|.++.++|++++|+..++++++++|.   +...
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~   87 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRP   87 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHH
Confidence            34568889999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.++..+|++++|+..|++++++.|+..
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        88 YFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999998543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.21  E-value=2e-09  Score=121.86  Aligned_cols=168  Identities=10%  Similarity=-0.058  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ....+...|..++..|++++|+..|.+++...|+.      ..+.+++.++.++|++++|+..+.++++.+|+   +..+
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~  772 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVL  772 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            44567778999999999999999999999999875      56788999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN  581 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~  581 (614)
                      ++.+|.++..+|++++|+..|+++++..|+  ++.....+. +.....++ .++...+.+++...+..+.....-.....
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~-~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAVVLNNLA-WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV  848 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHHHHHHHH-HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999885  333222222 22222222 34566677776665444333222233334


Q ss_pred             ccchhhhHHHHHHHHHHhccc
Q 047433          582 KSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       582 ~~g~~eQ~~dD~iral~~~~~  602 (614)
                      ..+..+++...+.+++..+|.
T Consensus       849 ~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       849 EKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCCC
Confidence            566777788888888888876

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=3.7e-10  Score=108.28  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=100.6

Q ss_pred             cCC-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          410 MMS-EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       410 ~ls-~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      .++ .++++       .+...|..++..|++++|...|+-...++|++     +..|.|+|.|+-.+|+|.+||..|.+|
T Consensus        28 ~~~~~~~l~-------~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         28 DDDVTQPLN-------TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             CCChHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            566 55554       89999999999999999999999999999999     999999999999999999999999999


Q ss_pred             HhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          489 LCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       489 LeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      +.++|+   ++.++++.|.|+..+|+.+.|.+.|+.++..+-
T Consensus        96 ~~L~~d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         96 AQIKID---APQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999   999999999999999999999999999999983

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.19  E-value=3.4e-09  Score=119.93  Aligned_cols=222  Identities=15%  Similarity=0.088  Sum_probs=133.9

Q ss_pred             Hhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcH
Q 047433          288 ILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLG  365 (614)
Q Consensus       288 ~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lG  365 (614)
                      ..++...|+  +|+..+.++++..|+-.     ..+..++.++...++.+.+...+.++....++.....      ..++
T Consensus       438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~la  506 (899)
T TIGR02917       438 ILSYLRSGQFDKALAAAKKLEKKQPDNA-----SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA------ANLA  506 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH------HHHH
Confidence            334444554  67777777777666543     4566777788888888888888888776555433322      1111


Q ss_pred             HHHH-----HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 047433          366 EAIT-----RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI  439 (614)
Q Consensus       366 e~it-----~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdy  439 (614)
                      ....     ......|..... .|.+..+...+..+.... .+.+...  ..-.+-....+.....+...+..+...|++
T Consensus       507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (899)
T TIGR02917       507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT-GNEEEAV--AWLEKAAELNPQEIEPALALAQYYLGKGQL  583 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CCHHHHH--HHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence            1000     001112222222 344444443333332111 0000000  000011111122234456677777788888


Q ss_pred             HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433          440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL  519 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL  519 (614)
                      ++|+..|.++++..|.+     ..++.+++.++...|++++|+..++++++++|.   +..+++.+|.++..+|++++|+
T Consensus       584 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~  655 (899)
T TIGR02917       584 KKALAILNEAADAAPDS-----PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD---SALALLLLADAYAVMKNYAKAI  655 (899)
T ss_pred             HHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888877777     778888888888888888888888888888887   7788888888888888888888


Q ss_pred             HHHHHHHHcCCC
Q 047433          520 MDCIMFINGCIR  531 (614)
Q Consensus       520 ~df~kALkl~P~  531 (614)
                      ..|+++++..|+
T Consensus       656 ~~~~~~~~~~~~  667 (899)
T TIGR02917       656 TSLKRALELKPD  667 (899)
T ss_pred             HHHHHHHhcCCC
Confidence            888888888775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.17  E-value=4.2e-09  Score=121.30  Aligned_cols=255  Identities=12%  Similarity=-0.038  Sum_probs=167.1

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhcc----CCCcC
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLL----DRPKN  363 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg----~~~k~  363 (614)
                      .+...|+  +|+..+.++++..|+..     +.+..+..++...++.+....++.+.....++........    .. .+
T Consensus       119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~-----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~-g~  192 (656)
T PRK15174        119 VLLKSKQYATVADLAEQAWLAFSGNS-----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNK-SR  192 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc-CC
Confidence            3455666  79999999999988876     7788888899999999998888877766555544332110    00 00


Q ss_pred             cHHHHHHHHHHhhhhhhh-cc-CcHHHHHHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433          364 LGEAITRALLLDYKLTEQ-KF-KNKKVQKALEE-IWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE  440 (614)
Q Consensus       364 lGe~it~aLl~dy~~~~~-~p-~n~e~~~aL~e-l~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye  440 (614)
                      ..++    + ..|..... .+ ........+.. +....    +.+..+..-..-+...+..+..+...|..++..|+++
T Consensus       193 ~~eA----~-~~~~~~l~~~~~~~~~~~~~l~~~l~~~g----~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~  263 (656)
T PRK15174        193 LPED----H-DLARALLPFFALERQESAGLAVDTLCAVG----KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR  263 (656)
T ss_pred             HHHH----H-HHHHHHHhcCCCcchhHHHHHHHHHHHCC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Confidence            0111    0 01111111 11 11111111110 00000    0011000011111112234557788999999999998


Q ss_pred             H----HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433          441 E----AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR  516 (614)
Q Consensus       441 e----AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye  516 (614)
                      +    |+..|+++++++|++     +.++.++|.++.++|++++|+..++++++++|+   +..+++.+|.++..+|+++
T Consensus       264 eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        264 EAKLQAAEHWRHALQFNSDN-----VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---LPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             hhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHH
Confidence            6    899999999999999     999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          517 ESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       517 EAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      +|+..|+++++..|+....  ..... ......++.-++...|..++...+...
T Consensus       336 eA~~~l~~al~~~P~~~~~--~~~~a-~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        336 AASDEFVQLAREKGVTSKW--NRYAA-AALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHHHhCccchHH--HHHHH-HHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999998853321  11111 122334455566777888877765543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.16  E-value=2.1e-09  Score=128.54  Aligned_cols=224  Identities=9%  Similarity=-0.040  Sum_probs=149.9

Q ss_pred             hhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHH
Q 047433          289 LCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGE  366 (614)
Q Consensus       289 ~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe  366 (614)
                      .|+.. |+  +|+..+.+++...|+      +|...++.-.+.-.++.+.....+.++...-++......++.-....|+
T Consensus       485 ~~l~~-~~~~eAi~a~~~Al~~~Pd------~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd  557 (987)
T PRK09782        485 KCYRD-TLPGVALYAWLQAEQRQPD------AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN  557 (987)
T ss_pred             HHHHh-CCcHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence            44444 55  589989999988875      4778888888888888888888877754432222211111100000000


Q ss_pred             HHHHHHHHhhhhhhh-ccCcHHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433          367 AITRALLLDYKLTEQ-KFKNKKVQKALEEIW-ELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAM  444 (614)
Q Consensus       367 ~it~aLl~dy~~~~~-~p~n~e~~~aL~el~-~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~  444 (614)
                      . .. ....|..... .|......-.+.... ...  +.+...  ..-.+-++..+. +..+...|..+.+.|++++|+.
T Consensus       558 ~-~e-A~~~l~qAL~l~P~~~~l~~~La~~l~~~G--r~~eAl--~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~  630 (987)
T PRK09782        558 G-AA-RDRWLQQAEQRGLGDNALYWWLHAQRYIPG--QPELAL--NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS  630 (987)
T ss_pred             H-HH-HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--CHHHHH--HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence            0 00 0011111111 222222222221111 000  000111  111111222222 5578899999999999999999


Q ss_pred             HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433          445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~k  524 (614)
                      .|.++++++|++     +.++.|+|.++..+|++++|+..+++|++++|+   +..+++.+|.++..+|++++|+..|++
T Consensus       631 ~l~~AL~l~Pd~-----~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        631 DLRAALELEPNN-----SNYQAALGYALWDSGDIAQSREMLERAHKGLPD---DPALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999     999999999999999999999999999999999   999999999999999999999999999


Q ss_pred             HHHcCCCCCC
Q 047433          525 FINGCIRSET  534 (614)
Q Consensus       525 ALkl~P~~~D  534 (614)
                      ++++.|+..+
T Consensus       703 Al~l~P~~a~  712 (987)
T PRK09782        703 VIDDIDNQAL  712 (987)
T ss_pred             HHhcCCCCch
Confidence            9999996554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=1.1e-09  Score=103.78  Aligned_cols=103  Identities=15%  Similarity=-0.064  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|++++|+..|.++++..|.+     ..++.+++.++...|++++|+..+.+++...+. +.....
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~  137 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-PQPARS  137 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-ccchHH
Confidence            34445555555555555555555555555555555     455555555555555555555555555543211 013445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ++.+|.++...|++++|...|.++++..|
T Consensus       138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       138 LENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            55555555555555555555555555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.13  E-value=1.9e-08  Score=106.12  Aligned_cols=290  Identities=14%  Similarity=0.029  Sum_probs=168.4

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHH------HH
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAI------TR  370 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~i------t~  370 (614)
                      +|+..++++++..|+..     ..+..++.++...++.+.+...++++... ++.......... ..+|..+      ..
T Consensus        53 ~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~-~~La~~~~~~g~~~~  125 (389)
T PRK11788         53 KAIDLFIEMLKVDPETV-----ELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLAL-QELGQDYLKAGLLDR  125 (389)
T ss_pred             HHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHH-HHHHHHHHHCCCHHH
Confidence            69999999998877544     46777888888888888877777665432 111100000000 0011111      11


Q ss_pred             HHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433          371 ALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEE-----MRVLVGLIKQEAKHLFWLGEIEEAAM  444 (614)
Q Consensus       371 aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~-----~~~~A~~lK~~GN~lFk~GdyeeAI~  444 (614)
                      ++ ..|..... .+.+..+...+..+....   .+.+..+..-..-...     ....+..+...|..++..|++++|+.
T Consensus       126 A~-~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        126 AE-ELFLQLVDEGDFAEGALQQLLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HH-HHHHHHHcCCcchHHHHHHHHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            11 12222211 233333333333322211   1111100000000000     00123346678889999999999999


Q ss_pred             HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH-CKSLWRRSQAYDMKGLGRESLMDCI  523 (614)
Q Consensus       445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~-~KAyyRRA~Al~~LG~yeEAL~df~  523 (614)
                      .|.++++..|+.     ..++..+|.+|.+.|++++|+..++++++.+|.   + ..++..++.+|..+|++++|+..++
T Consensus       202 ~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        202 LLKKALAADPQC-----VRASILLGDLALAQGDYAAAIEALERVEEQDPE---YLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             HHHHHHhHCcCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999988     889999999999999999999999999999988   5 4678889999999999999999999


Q ss_pred             HHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcC--CcccchhhhHHHHHHHHHHhcc
Q 047433          524 MFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYG--ENKSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       524 kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~--~~~~g~~eQ~~dD~iral~~~~  601 (614)
                      ++++..|+..  . -..+. ......++.-++...|.+++...+..+.....-...  ....|...+.++.+.+.++...
T Consensus       274 ~~~~~~p~~~--~-~~~la-~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~  349 (389)
T PRK11788        274 RALEEYPGAD--L-LLALA-QLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL  349 (389)
T ss_pred             HHHHhCCCch--H-HHHHH-HHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence            9999988431  1 11111 111112233455566777766643322211100000  1112344456665655555555


Q ss_pred             cccCCccc
Q 047433          602 NLISGKLC  609 (614)
Q Consensus       602 ~~~~g~~~  609 (614)
                      ...|.+.|
T Consensus       350 ~~~p~~~c  357 (389)
T PRK11788        350 KRKPRYRC  357 (389)
T ss_pred             hCCCCEEC
Confidence            55565654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.11  E-value=5.2e-10  Score=117.75  Aligned_cols=104  Identities=19%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+....+.|++++..|++..|+..|..||+.+|++     -.+++.||.+|+.+|+-..|+.|++++|++.|+   ..-|
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~A  108 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAA  108 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHH
Confidence            45588999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      -..||.++.++|++++|..||+.+|+.+|...
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.09  E-value=2.7e-10  Score=92.29  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSN  493 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP  493 (614)
                      .|..+...|..++..|+|++|+..|+++|+++|++     +.+|.|+|.||.++| ++++|+.++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36689999999999999999999999999999999     999999999999999 79999999999999998

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.08  E-value=9.8e-09  Score=125.02  Aligned_cols=66  Identities=20%  Similarity=0.026  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ..+..+|+.+...|++++|+..|+++++++|++     +.++.++|.+|.++|++++|+..++++++++|.
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            346678889999999999999999999999998     888899999999999999999999998888886

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.08  E-value=2.3e-09  Score=100.13  Aligned_cols=105  Identities=23%  Similarity=0.279  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-Ccc
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSH  498 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~  498 (614)
                      ++.+..+-.+|..+-..|+.++|++.|+++|.++|..     +.+|+|||+++...|+.++|+.|.++|+++..+. ...
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta  114 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPER-----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA  114 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence            4467788889999999999999999999999999999     9999999999999999999999999999998762 234


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      ..+|..||..|..+|+-+.|..||..+.++-
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            5799999999999999999999999999994

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=2e-09  Score=85.70  Aligned_cols=98  Identities=23%  Similarity=0.214  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|++++|+..++++++..|..     ..++.++|.++...+++++|+..+++++.+.|.   +..+++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~   73 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN   73 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence            36678999999999999999999999999988     789999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      +|.++...|++++|...+.++++..|
T Consensus        74 ~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          74 LGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            99999999999999999999999876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.08  E-value=1.9e-09  Score=106.64  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhcCCCCC
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH-LLLRE--PDAAISDATRALCLSNPPN  496 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~y-lkLGd--yeeAI~D~~~ALeLdP~~~  496 (614)
                      +..+..|...|..+...|++++|+..|++|+.+.|++     +.++.+.|.++ ...|+  +++|+..++++++++|+  
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-----~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--  142 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-----AELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--  142 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--
Confidence            3466689999999999999999999999999999999     99999999985 77788  59999999999999999  


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                       +..+++.+|.++.++|++++|+..+++++++.|..
T Consensus       143 -~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        143 -EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence             99999999999999999999999999999998853

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.07  E-value=9.5e-09  Score=125.13  Aligned_cols=234  Identities=12%  Similarity=0.035  Sum_probs=151.1

Q ss_pred             hhHHHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhc--------hh
Q 047433          283 VGLIRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLID--------LV  352 (614)
Q Consensus       283 ~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvD--------Ls  352 (614)
                      +.+++++... .|+  +|+..++++++..|+..     -.++.+..++...++.+.+...++++...-.+        +.
T Consensus       150 ~~y~~~~~~~-~g~~~~A~~~L~~ll~~~P~~~-----~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~  223 (1157)
T PRK11447        150 VEYWRLVAKL-PAQRPEAINQLQRLNADYPGNT-----GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG  223 (1157)
T ss_pred             HHHHHHHhhC-CccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence            4456666643 455  69999999999999977     67889999998889989888888776432110        11


Q ss_pred             hhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHH-----------------HHHHHHHHHhhcCCHHH
Q 047433          353 ELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWEL-----------------KVERRKREKMMMMSEEK  415 (614)
Q Consensus       353 eL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~l-----------------kvEr~erEk~~~ls~ee  415 (614)
                      .+..+... ......+...+ ..      .+.......+...+...                 .....+.+..+..-.+-
T Consensus       224 ~l~~~~~~-~~~~~~l~~~l-~~------~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a  295 (1157)
T PRK11447        224 QIKDMPVS-DASVAALQKYL-QV------FSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA  295 (1157)
T ss_pred             HHhccCCC-hhhHHHHHHHH-HH------CCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11111111 11111111111 11      11111111111111000                 00000111100111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcch---------hHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          416 VEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE---------RMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       416 l~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~---------~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      ++..+..+..+...|..+++.|++++|+..|+++++++|+.....         ......+++.++++.|++++|+..++
T Consensus       296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~  375 (1157)
T PRK11447        296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ  375 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            223344566788999999999999999999999999999752211         11234567889999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++++++|+   +..+++.+|.++..+|++++|+..|++++++.|++.
T Consensus       376 ~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        376 QARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999   999999999999999999999999999999999654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.04  E-value=7.5e-10  Score=89.72  Aligned_cols=66  Identities=17%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG-LGRESLMDCIMFINGCI  530 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG-~yeEAL~df~kALkl~P  530 (614)
                      +..|.++|.+++.+|+|++|+..++++|+++|+   ++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            789999999999999999999999999999999   9999999999999999 79999999999999987

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.01  E-value=1.8e-08  Score=120.63  Aligned_cols=165  Identities=14%  Similarity=-0.041  Sum_probs=122.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ  507 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~  507 (614)
                      ..+......|++++|+..|.++++++| +     ..++.|+|.++.++|++++|+..++++++++|+   +..++..+|.
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~  651 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGY  651 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence            345555667999999999999999999 4     689999999999999999999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhh
Q 047433          508 AYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEE  587 (614)
Q Consensus       508 Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~e  587 (614)
                      ++..+|++++|+..|++++++.|++.  .....+. .+....++.-++...|++++..++................++-.
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~--~a~~nLA-~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDP--ALIRQLA-YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR  728 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999644  3333333 33333444456667788888776543333332222233333444


Q ss_pred             hHHHHHHHHHHhccccc
Q 047433          588 QRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       588 Q~~dD~iral~~~~~~~  604 (614)
                      ...+++.|...-+|+..
T Consensus       729 ~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        729 RLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHHHhhcCccch
Confidence            45555566555555543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=8.3e-09  Score=90.00  Aligned_cols=107  Identities=9%  Similarity=-0.060  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      +.+...|..++..|+|++|+..|.+++...|++  .....++.++|.++++.|+++.|+..+..++..+|+.+....+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            467889999999999999999999999998864  223578999999999999999999999999999998433468899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ..|.++..+|++++|+..++++++..|++
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            99999999999999999999999999854

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=98.97  E-value=4.3e-09  Score=118.71  Aligned_cols=89  Identities=11%  Similarity=-0.129  Sum_probs=65.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .+++++|+..+.+|++++|++     +.++.++|.++...|++++|+..+++|++++|+   +..+|+.+|.++..+|++
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~  388 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQL  388 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence            345677777777777777777     777777777777777777777777777777777   777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 047433          516 RESLMDCIMFINGCIRS  532 (614)
Q Consensus       516 eEAL~df~kALkl~P~~  532 (614)
                      ++|+..|+++++++|.+
T Consensus       389 ~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        389 EEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            77777777777777753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=2.5e-09  Score=119.92  Aligned_cols=177  Identities=12%  Similarity=0.064  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..++.|...||-+--+++++.||..+.+||.++|..     +-+|.-.|.=+....+|+.|...|+.||..+|.   +.
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---hY  489 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-----AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---HY  489 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---hh
Confidence            3466789999999999999999999999999999999     899999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYG  579 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~  579 (614)
                      .|||-+|.+|.++++++.|.-.|++|++++|.+.--  ...+. -.....++.-++...|++|+..++..+-...+..  
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi--~~~~g-~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~--  564 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI--LCHIG-RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA--  564 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH--Hhhhh-HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH--
Confidence            999999999999999999999999999999853321  11111 1122233334566788888888755443333222  


Q ss_pred             CcccchhhhHHHHHHHHHHhcccccCCccccc
Q 047433          580 ENKSGIEEQRYCDMIRTMMEKKNLISGKLCAI  611 (614)
Q Consensus       580 ~~~~g~~eQ~~dD~iral~~~~~~~~g~~~~~  611 (614)
                        ........+++..+.+.+-+...|..+++.
T Consensus       565 --~il~~~~~~~eal~~LEeLk~~vP~es~v~  594 (638)
T KOG1126|consen  565 --SILFSLGRYVEALQELEELKELVPQESSVF  594 (638)
T ss_pred             --HHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence              234444556666666666666666665543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.93  E-value=1.3e-09  Score=114.89  Aligned_cols=106  Identities=26%  Similarity=0.252  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~  497 (614)
                      +....+...+.++.+++..|++++||+.|+.||.++|..     +.+|.+|+.++++++++..||.||..|++++|+   
T Consensus       109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~-----a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---  180 (377)
T KOG1308|consen  109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL-----AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---  180 (377)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch-----hhhcccccceeeeccCCchhhhhhhhhhccCcc---
Confidence            344577789999999999999999999999999999999     999999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..+.|--||.++..+|++++|..|+..+++++-+
T Consensus       181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             cccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999653

>PLN02789 farnesyltranstransferase

Probab=98.92  E-value=2.7e-08  Score=105.64  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=104.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCc--HHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREP--DAAISDAT  486 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdy--eeAI~D~~  486 (614)
                      .++.+-++..+.....|..+|..+...| ++++|+..++++|+.+|.+     ..+|++|+.++.++|+.  ++++..++
T Consensus        58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~~el~~~~  132 (320)
T PLN02789         58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAANKELEFTR  132 (320)
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence            4444445556667779999999999998 6899999999999999999     99999999999999984  78899999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      ++|++||.   +..+|..|+.++..+|++++|++++.++++.+|.+..+
T Consensus       133 kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789        133 KILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            99999999   99999999999999999999999999999999865543

>PRK12370 invasion protein regulator; Provisional

Probab=98.92  E-value=4.8e-08  Score=110.27  Aligned_cols=101  Identities=6%  Similarity=-0.140  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|..+...|++++|+..|.+|++++|++     +.++.++|.++..+|++++|+..++++++++|.   +..
T Consensus       336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~  407 (553)
T PRK12370        336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAA  407 (553)
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---Chh
Confidence            355678889999999999999999999999999999     999999999999999999999999999999999   888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      +++.++.+++.+|++++|+..++++++..
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            87778888999999999999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.89  E-value=1.1e-07  Score=100.49  Aligned_cols=176  Identities=11%  Similarity=-0.070  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ....+...+..+.+.|++++|++.|.++++..|.........++.++|.++.+.|++++|+..++++++++|+   ...+
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  216 (389)
T PRK11788        140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---CVRA  216 (389)
T ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---CHHH
Confidence            4456788899999999999999999999998886533345567889999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN  581 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~  581 (614)
                      ++.+|.++...|++++|+..|+++++..|... ......+. .+....++.-++...+.+++...+..+ ..........
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~l~-~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~  293 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQDPEYL-SEVLPKLM-ECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLE  293 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHH
Confidence            99999999999999999999999999876321 11111111 111122333444556666655543221 1122222333


Q ss_pred             ccchhhhHHHHHHHHHHhcccc
Q 047433          582 KSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       582 ~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ..+..+++...+.+++...|+.
T Consensus       294 ~~g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        294 EQEGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             HhCCHHHHHHHHHHHHHhCcCH
Confidence            4455556666666667666654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.87  E-value=2.5e-07  Score=87.64  Aligned_cols=99  Identities=19%  Similarity=0.208  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVC--PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~--P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      .+...|..++..|++++|+..|.+++...  |..     ...+.++|.++...|++++|+..+.++++.+|.   +..++
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~  172 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESL  172 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHH
Confidence            34455667777788888888888887753  223     566777888888888888888888888888887   77778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +.+|.++...|++++|+..++++++..|.
T Consensus       173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       173 LELAELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            88888888888888888888888877553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=4.5e-08  Score=93.74  Aligned_cols=107  Identities=20%  Similarity=0.044  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      +...+..+...|..+...|+|++|+..|.+++++.|+.  .....++.++|.++.++|++++|+..+.+++.++|.   +
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~  105 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---Q  105 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Confidence            34467789999999999999999999999999988753  123678999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCC
Q 047433          499 CKSLWRRSQAYDMKGL--------------GRESLMDCIMFINGCI  530 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~--------------yeEAL~df~kALkl~P  530 (614)
                      ..++..+|.++..+|+              +++|++.++++++..|
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            9999999999999988              5667777777777766

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.84  E-value=7.7e-09  Score=87.62  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .|+|+.|+..|.+.++..|.+  . ...++.++|.||+++|+|++|+..+++ ++.+|.   +...++-.|+|+..+|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~--~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~y   74 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTN--P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGKY   74 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGT--H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-H
T ss_pred             CccHHHHHHHHHHHHHHCCCC--h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCCH
Confidence            689999999999999999952  1 267888899999999999999999999 999999   889999999999999999


Q ss_pred             HHHHHHHHHH
Q 047433          516 RESLMDCIMF  525 (614)
Q Consensus       516 eEAL~df~kA  525 (614)
                      ++|+..|+++
T Consensus        75 ~eAi~~l~~~   84 (84)
T PF12895_consen   75 EEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999999875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.84  E-value=1.3e-07  Score=93.79  Aligned_cols=112  Identities=17%  Similarity=0.041  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.+++...|++  .....++.++|.+|+++|++++|+..++++++.+|+......+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45578999999999999999999999999999975  2223688999999999999999999999999999983222348


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCCh
Q 047433          502 LWRRSQAYDMK--------GLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       502 yyRRA~Al~~L--------G~yeEAL~df~kALkl~P~~~D~  535 (614)
                      ++.+|.++..+        |++++|+..|+++++..|++...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  151 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA  151 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence            99999999987        89999999999999999976543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.83  E-value=2e-08  Score=94.31  Aligned_cols=115  Identities=9%  Similarity=-0.102  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433          443 AMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC  522 (614)
Q Consensus       443 I~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df  522 (614)
                      ...|+++|+++|+.        +.++|.++..+|++++|+..|++++.++|.   +..+|+.+|.++..+|++++|+..|
T Consensus        13 ~~~~~~al~~~p~~--------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y   81 (144)
T PRK15359         13 EDILKQLLSVDPET--------VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFY   81 (144)
T ss_pred             HHHHHHHHHcCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            46789999999964        568999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 047433          523 IMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPV  571 (614)
Q Consensus       523 ~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~  571 (614)
                      +++++++|++.+...+  +. .+....++.-++...|..++...+..+.
T Consensus        82 ~~Al~l~p~~~~a~~~--lg-~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         82 GHALMLDASHPEPVYQ--TG-VCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HHHHhcCCCCcHHHHH--HH-HHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            9999999975554322  22 2222345556667778888776655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.81  E-value=1.5e-07  Score=109.20  Aligned_cols=103  Identities=8%  Similarity=-0.152  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+..+......++.+++.+++++|+..+.+++..+|++     +.+++++|.++.++|+|++|+..|++++.-+|+   +
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---~  187 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-----AREILLEAKSWDEIGQSEQADACFERLSRQHPE---F  187 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---c
Confidence            34456667777777777777777777777777777777     777777777777777777777777777777777   7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      .+++..+|.++..+|+.++|...|+++++..
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7777777777777777777777777777764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.2e-09  Score=114.04  Aligned_cols=86  Identities=24%  Similarity=0.313  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ...++..+.+||..++..+|.+|+..|+.||+++|++     +..|.|||.+++.+++|++|.-|+++.++++|.   ..
T Consensus        46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~---~~  117 (486)
T KOG0550|consen   46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-----ASYYSNRAATLMMLGRFEEALGDARQSVRLKDG---FS  117 (486)
T ss_pred             HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-----hhhhchhHHHHHHHHhHhhcccchhhheecCCC---cc
Confidence            3478899999999999999999999999999999999     999999999999999999999999988888887   44


Q ss_pred             HHHHHHHHHHHHcC
Q 047433          500 KSLWRRSQAYDMKG  513 (614)
Q Consensus       500 KAyyRRA~Al~~LG  513 (614)
                      +++.|.++|+..++
T Consensus       118 k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen  118 KGQLREGQCHLALS  131 (486)
T ss_pred             ccccchhhhhhhhH
Confidence            44444444444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.79  E-value=1.2e-07  Score=90.11  Aligned_cols=99  Identities=16%  Similarity=-0.044  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.+++.+.|+.  ...+.++.|+|.+|..+|++++|+..+++|++++|.   +..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~  108 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQA  108 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHH
Confidence            56688999999999999999999999999997752  233679999999999999999999999999999999   8899


Q ss_pred             HHHHHHHHH-------HcCCHHHHHHHHHHH
Q 047433          502 LWRRSQAYD-------MKGLGRESLMDCIMF  525 (614)
Q Consensus       502 yyRRA~Al~-------~LG~yeEAL~df~kA  525 (614)
                      +..+|.++.       .+|++++|+.++.++
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            999999988       788877555555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.77  E-value=1.4e-07  Score=95.35  Aligned_cols=143  Identities=17%  Similarity=0.009  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+....+.|-.++..|++..|.....+||+.+|++     ..+|.-||..|.++|+.+.|-+.|++|+.++|+   +...
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdV  105 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccch
Confidence            55678889999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNV  574 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~  574 (614)
                      +.+-|.-++.+|++++|...|++|+.. |.... ++....+..|.. ..++.-++...|.+++..++..++...
T Consensus       106 LNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063         106 LNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             hhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHH
Confidence            999999999999999999999999986 43332 222333442332 234445667788888888876665443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.77  E-value=6e-08  Score=101.15  Aligned_cols=126  Identities=12%  Similarity=-0.132  Sum_probs=98.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .+..+.+|..++++|...|.+ ++..+..|++||.+|..+|++++|+.+++++++++|+   +..+|+.+|.++..+|++
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCH
Confidence            346788999999999765532 3456889999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          516 RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       516 eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      ++|+..|+++++++|++.....+..+.   ....++..++...|..++...+.
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~---l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIA---LYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999755433222221   11223334455556666555443

>PLN02789 farnesyltranstransferase

Probab=98.77  E-value=6.1e-08  Score=102.94  Aligned_cols=163  Identities=9%  Similarity=-0.002  Sum_probs=121.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433          433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      +...+.+++|+..++++|+++|.+     ..+|.+|+.++.++| ++++|+..++++++.+|+   +..+|+.|+.++..
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~  118 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEK  118 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHH
Confidence            345678999999999999999999     999999999999999 689999999999999999   99999999999999


Q ss_pred             cCCH--HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc-------
Q 047433          512 KGLG--RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK-------  582 (614)
Q Consensus       512 LG~y--eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~-------  582 (614)
                      +|+.  ++++..+.++++.+|++...-....   ++...+++-.++...+.++++.++.+.....+.......       
T Consensus       119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~---w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQ---WVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcccHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            9984  7889999999999885443321211   222333333455566777777765554333222221111       


Q ss_pred             cchhhhHHHHHHHHHHhcccccCC
Q 047433          583 SGIEEQRYCDMIRTMMEKKNLISG  606 (614)
Q Consensus       583 ~g~~eQ~~dD~iral~~~~~~~~g  606 (614)
                      ....+++++...++|..+|+..|-
T Consensus       196 ~~~~e~el~y~~~aI~~~P~N~Sa  219 (320)
T PLN02789        196 EAMRDSELKYTIDAILANPRNESP  219 (320)
T ss_pred             cccHHHHHHHHHHHHHhCCCCcCH
Confidence            112356788888999999987653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.76  E-value=1.3e-07  Score=109.78  Aligned_cols=133  Identities=8%  Similarity=-0.077  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .++.+...|......|.+++|...+..+++++|++     ..++.|++.++.+++++++|+..+++++..+|+   +..+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~  156 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-----SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SARE  156 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHH
Confidence            46689999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK  565 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k  565 (614)
                      ++.+|.++.++|+|++|+..|++++...|+..  +....+. ......++.-.+...|+.|+..
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~--~~~~~~a-~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFE--NGYVGWA-QSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH--HHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999777533  3322222 2233334445555555555444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=2e-07  Score=104.99  Aligned_cols=207  Identities=16%  Similarity=0.119  Sum_probs=154.5

Q ss_pred             HHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhc
Q 047433          303 KQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQK  382 (614)
Q Consensus       303 ~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~  382 (614)
                      ++.|+.-++==     -...++|..+.|.+|-+++.+.+.+|+..-++++--++|-.+     +.   ...+.|.     
T Consensus       411 q~Li~~~~~sP-----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGh-----E~---~~~ee~d-----  472 (638)
T KOG1126|consen  411 QDLIDTDPNSP-----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH-----ES---IATEEFD-----  472 (638)
T ss_pred             HHHHhhCCCCc-----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCC-----hh---hhhHHHH-----
Confidence            45555444422     234788888999999999999999998887777777766554     00   0111111     


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhH
Q 047433          383 FKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERM  462 (614)
Q Consensus       383 p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a  462 (614)
                             .+...+        +..-  .+.+.       .-.+|.-.|-.+.++++|+.|.-.|.+|++++|.+     .
T Consensus       473 -------~a~~~f--------r~Al--~~~~r-------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-----s  523 (638)
T KOG1126|consen  473 -------KAMKSF--------RKAL--GVDPR-------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-----S  523 (638)
T ss_pred             -------hHHHHH--------Hhhh--cCCch-------hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-----h
Confidence                   111111        1111  34433       33489999999999999999999999999999999     9


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP  542 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~  542 (614)
                      ++..-.+..+.++|+.++|+..+++|+.+||.   ++-.-|.+|.++..+++|++|+..+++.-++.|+..       ..
T Consensus       524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-------~v  593 (638)
T KOG1126|consen  524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCKYHRASILFSLGRYVEALQELEELKELVPQES-------SV  593 (638)
T ss_pred             hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-------HH
Confidence            99999999999999999999999999999999   999999999999999999999999999999999432       23


Q ss_pred             HHHHHHHHHHHHHH----HHHhhhhhcC
Q 047433          543 YYAARMISKHMNAL----WVFGGARSKI  566 (614)
Q Consensus       543 ~y~~r~i~Kqmea~----~lF~~Ai~k~  566 (614)
                      ++....+.+++...    ..|.-|...+
T Consensus       594 ~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  594 FALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            45555566666543    3444444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.1e-07  Score=105.70  Aligned_cols=105  Identities=17%  Similarity=0.096  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .++...-.|--++-.|+|+.||.+|+.||...|++     ..+|+.+|+.+-.-.+..+||+.|++||+|.|.   ++.+
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~  500 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRV  500 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeee
Confidence            34466778999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .|++|.++..+|.|+||++.|..||.+.+++..
T Consensus       501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~  533 (579)
T KOG1125|consen  501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN  533 (579)
T ss_pred             ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence            999999999999999999999999999887544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-07  Score=103.48  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=109.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ  507 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~  507 (614)
                      --||-+--.++++.|+..|.+|++++|..     ..+|.-.|.=|+.+++-..||..|++|++++|.   ..+|||.+||
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~-----~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLGQ  406 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKY-----LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLGQ  406 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcch-----hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhhH
Confidence            45788888899999999999999999999     999999999999999999999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          508 AYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       508 Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      +|..++.+.=|+-.|++|+++.|.  |+..-..+..+- -.+.+..++.+.|.+|+.-.
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~kPn--DsRlw~aLG~CY-~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELKPN--DSRLWVALGECY-EKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCC--chHHHHHHHHHH-HHhccHHHHHHHHHHHHhcc
Confidence            999999999999999999999884  555444555444 23445567788898887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.68  E-value=1.5e-06  Score=101.85  Aligned_cols=170  Identities=11%  Similarity=-0.098  Sum_probs=96.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------------C
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP------------N  496 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~------------~  496 (614)
                      .|..++..|++++|+..|.++++..|.. .......+.+++.+++..|++++|+..+++++..+|..            +
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~-~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~  356 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETI-ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND  356 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCC-CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence            4677788888888888888888776643 11113456666667777777777777777777776620            0


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQE  576 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e  576 (614)
                      ....+++.+|.++...|++++|++.+++++...|++.  .....+. .+....++..++...+++++...+..+......
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--~l~~~lA-~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--GLRIDYA-SVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            0245667777777777777777777777777777532  2122211 122222333445555666665554443333322


Q ss_pred             CcCCcccchhhhHHHHHHHHHHhccc
Q 047433          577 SYGENKSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       577 ~~~~~~~g~~eQ~~dD~iral~~~~~  602 (614)
                      .......+.-+++...+.+.+...|+
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            22233333344444444444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.66  E-value=3.8e-07  Score=94.47  Aligned_cols=108  Identities=9%  Similarity=-0.048  Sum_probs=97.4

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          424 GLIKQEAKHL-FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       424 ~~lK~~GN~l-Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ......+..+ ++.|+|++|+..|.+.|+..|+.  ...+.+++-+|.+|+..|+|++|+..+.++++..|+++....++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            4567777776 67899999999999999999975  34457999999999999999999999999999999877789999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +++|.++..+|++++|+..|+++++..|++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999999999654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.65  E-value=3.9e-07  Score=88.20  Aligned_cols=104  Identities=10%  Similarity=-0.030  Sum_probs=98.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      .+|+++++       .....|-.+|..|++++|...|+-....+|.+     ...+..+|.|+..+++|++|+..|..|.
T Consensus        31 gis~~~le-------~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~   98 (165)
T PRK15331         31 GIPQDMMD-------GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDYTMGLAAVCQLKKQFQKACDLYAVAF   98 (165)
T ss_pred             CCCHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777665       88999999999999999999999999999999     9999999999999999999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .++++   ++..+|+.|+||..+|+.+.|...|..+++.
T Consensus        99 ~l~~~---dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331         99 TLLKN---DYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HcccC---CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence            99999   8899999999999999999999999999994

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.65  E-value=4.5e-07  Score=89.76  Aligned_cols=122  Identities=11%  Similarity=-0.029  Sum_probs=97.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH-HHcCC
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAY-DMKGL  514 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al-~~LG~  514 (614)
                      .++.++++..|.++++.+|++     ...|.++|.+|..+|++++|+..+++|++++|+   +...+...|.++ ...|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQ  123 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCC
Confidence            677899999999999999999     999999999999999999999999999999999   999999999986 67787


Q ss_pred             --HHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          515 --GRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       515 --yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                        +++|...++++++.+|++.+..  ..+. ......+..-++...+.++....++
T Consensus       124 ~~~~~A~~~l~~al~~dP~~~~al--~~LA-~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        124 HMTPQTREMIDKALALDANEVTAL--MLLA-SDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             CCcHHHHHHHHHHHHhCCCChhHH--HHHH-HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence              5999999999999999654432  2222 1122233334455556666555433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.63  E-value=1e-07  Score=76.53  Aligned_cols=64  Identities=14%  Similarity=-0.019  Sum_probs=58.9

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          466 SNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       466 sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +++|..+++.|+|++|+..++++++.+|.   +..+++.+|.++..+|++++|+..|+++++..|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            36789999999999999999999999999   99999999999999999999999999999999853

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.62  E-value=3.6e-07  Score=82.63  Aligned_cols=83  Identities=8%  Similarity=-0.084  Sum_probs=78.0

Q ss_pred             HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI  523 (614)
Q Consensus       444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~  523 (614)
                      +.|.+++..+|.+     .....++|.+++..|++++|+..+++++.++|.   +..+++++|.++..+|++++|+..|+
T Consensus         4 ~~~~~~l~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~   75 (135)
T TIGR02552         4 ATLKDLLGLDSEQ-----LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA   75 (135)
T ss_pred             hhHHHHHcCChhh-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999998     899999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHcCCCCCC
Q 047433          524 MFINGCIRSET  534 (614)
Q Consensus       524 kALkl~P~~~D  534 (614)
                      ++++..|.+.+
T Consensus        76 ~~~~~~p~~~~   86 (135)
T TIGR02552        76 LAAALDPDDPR   86 (135)
T ss_pred             HHHhcCCCChH
Confidence            99999886443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.61  E-value=5.7e-06  Score=82.03  Aligned_cols=108  Identities=9%  Similarity=0.001  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHhcCCCC
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL--------REPDAAISDATRALCLSNPP  495 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL--------GdyeeAI~D~~~ALeLdP~~  495 (614)
                      ..+...|..++..|++++|+..|.++++..|++  .....++.++|.+++++        |++++|+..++++++.+|+.
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH--PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            467888999999999999999999999999976  22244789999999987        89999999999999999992


Q ss_pred             CccHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          496 NSHCKSL--------------WRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       496 ~~~~KAy--------------yRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ....+++              +.+|..+...|++++|+..|+++++..|+++
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence            2112222              4678889999999999999999999998654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.61  E-value=1.6e-06  Score=88.64  Aligned_cols=129  Identities=12%  Similarity=0.044  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|...+..|+|++|+..|++.+...|..  .....+..++|.+|+++++|++|+..+++.++++|+++-...++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4467789999999999999999999999999965  45556678999999999999999999999999999966667899


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHH
Q 047433          503 WRRSQAYDMKGL------------------GRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHM  553 (614)
Q Consensus       503 yRRA~Al~~LG~------------------yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqm  553 (614)
                      |.+|.++..++.                  ..+|+..|+++++..|++.- ++++..+.....++-.+.+
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999866651                  36789999999999998765 4444445544444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.60  E-value=1.6e-06  Score=85.79  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|.+|+..|++.+...|.  ++....+...+|.++++.|+|.+|+..+++-++..|+++.-..+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            4568899999999999999999999999999996  36667889999999999999999999999999999996666789


Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCCh-HhhcchHHHHHHHHHHHH
Q 047433          502 LWRRSQAYDMKG-----------LGRESLMDCIMFINGCIRSETT-SKRVKIPYYAARMISKHM  553 (614)
Q Consensus       502 yyRRA~Al~~LG-----------~yeEAL~df~kALkl~P~~~D~-~~k~kl~~y~~r~i~Kqm  553 (614)
                      +|.+|.+++.+.           ...+|+..|+.+++..|++.-. +++..+.....++-.+.+
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~  145 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL  145 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987764           3458999999999999987753 334445544444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.56  E-value=1.5e-06  Score=82.33  Aligned_cols=110  Identities=17%  Similarity=0.076  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|...++.|+|.+|+..++.....-|.  .+....+...++-+|++.++|++|+..+++-|+|+|+++--.-++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            447889999999999999999999999998885  355578899999999999999999999999999999954445699


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCCCC
Q 047433          503 WRRSQAYDMKGL---------------GRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       503 yRRA~Al~~LG~---------------yeEAL~df~kALkl~P~~~D  534 (614)
                      |++|.+++.+..               ..+|+.+|+++++..|++.-
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            999999999988               99999999999999997654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.54  E-value=4.8e-06  Score=97.77  Aligned_cols=102  Identities=12%  Similarity=-0.088  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ......|..+...|++++|+..+++++...|.+     ..++.++|.++...|++++|+..++++++++|+   +..+++
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l~~  431 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-----QGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINLEV  431 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHH
Confidence            355678899999999999999999999999999     999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      .+|.++..+|++++|...++++++..|++.
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999644

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.53  E-value=2.7e-07  Score=74.08  Aligned_cols=62  Identities=23%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+|..+++.|+|++|+..|+++++..|.+     ..++..+|.++..+|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN-----PEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999999     999999999999999999999999999999998

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.1e-06  Score=95.94  Aligned_cols=108  Identities=11%  Similarity=-0.005  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          415 KVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       415 el~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .++.++.....|...|-++...++-..||+.|++||++||.+     -.+|+.+|++|--++-..=|+-.+++|+++.|+
T Consensus       356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn  430 (559)
T KOG1155|consen  356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPN  430 (559)
T ss_pred             HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            344456678899999999999999999999999999999999     899999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                         ....|.-+|.||.++++.+||+++|.+++....
T Consensus       431 ---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  431 ---DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             ---chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence               889999999999999999999999999999853

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=3e-07  Score=101.32  Aligned_cols=103  Identities=19%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcCCCCC
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL---REPDAAISDATRALCLSNPPN  496 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL---GdyeeAI~D~~~ALeLdP~~~  496 (614)
                      ++.++.++++||..|..+....||..|++++...|..     ..+|.|||.++++.   |+...|+.||..|+++||.  
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~-----~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s--  443 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA-----IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS--  443 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch-----hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--
Confidence            4466789999999999999999999999999999998     99999999999995   6888999999999999999  


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                       +.||+|+++.++.+++++.+|+.+...+....|
T Consensus       444 -~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  444 -IQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             -HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence             999999999999999999999988877777777

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.47  E-value=4.8e-07  Score=92.59  Aligned_cols=102  Identities=18%  Similarity=-0.005  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.+.+.|++++|+..|.++++++|++     ..+..+.+..++..|+++++...++...+..|+   +...
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---~~~~  216 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-----PDARNALAWLLIDMGDYDEAREALKRLLKAAPD---DPDL  216 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---SCCH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---HHHH
Confidence            55678899999999999999999999999999999     999999999999999999988888777777777   6667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +...|.++..+|++++|+..|+++++..|+
T Consensus       217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  217 WDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhcccccccccccccccccccccc
Confidence            788899999999999999999999999884

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.44  E-value=1.1e-06  Score=71.66  Aligned_cols=58  Identities=31%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .++..++|++|+..+++++.++|.+     +.++.++|.++.++|+|.+|+.+++++++++|+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDD-----PELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            4455555555555555555555555     555555555555555555555555555555555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.40  E-value=5.6e-07  Score=92.07  Aligned_cols=164  Identities=13%  Similarity=0.041  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVC--PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~--P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ...+......++..++++++...+.++....  |.+     +.+|.-+|.++.+.|++++|+.++++|++++|+   +..
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~  181 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----ARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPD  181 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHH
Confidence            3445556667889999999999999987655  555     889999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGE  580 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~  580 (614)
                      +...++.++...|+++++...+....+..|+++.  ....+. .+...+++.-++...|.++....+..|.+...-....
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--~~~~la-~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--LWDALA-AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--HCHHHH-HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--HHHHHH-HHhcccccccccccccccccccccccccccccccccc
Confidence            9999999999999999988888888877664333  222222 2333345555667788888777766666555555555


Q ss_pred             cccchhhhHHHHHHHHH
Q 047433          581 NKSGIEEQRYCDMIRTM  597 (614)
Q Consensus       581 ~~~g~~eQ~~dD~iral  597 (614)
                      ...|..+++.+-..+++
T Consensus       259 ~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  259 EQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             T----------------
T ss_pred             ccccccccccccccccc
Confidence            56666666655544443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.39  E-value=3.5e-06  Score=86.49  Aligned_cols=99  Identities=14%  Similarity=0.015  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+..+|..+|..|+|.+|+..+.++..+.|++     ..+|+-+|.+|.++|++++|-..|.+|+++.|+   ....+-
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~n  172 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-----WEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIAN  172 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC-----hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cchhhh
Confidence            356669999999999999999999999999999     999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ++|..|+-.|+++.|...+..+....+
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            999999999999999999999988865

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=4.4e-06  Score=93.17  Aligned_cols=97  Identities=21%  Similarity=0.226  Sum_probs=93.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      ..+|..+++.|+..+|+-.|..|+..+|.+     +.+|.-+|.++...++-..||..+.++++|||+   |.+++..+|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h-----aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLA  360 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH-----AEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALA  360 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHH-----HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHH
Confidence            467999999999999999999999999999     999999999999999999999999999999999   999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          507 QAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       507 ~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..|...|.-.+|+..+.+-+...|.
T Consensus       361 VSytNeg~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  361 VSYTNEGLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999887764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.36  E-value=9.6e-07  Score=72.09  Aligned_cols=63  Identities=19%  Similarity=0.065  Sum_probs=59.0

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ..+|+..++|++|+..+++++.++|+   ++.+++.+|.++..+|++++|+.+|+++++..|++.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            46789999999999999999999999   9999999999999999999999999999999995443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.36  E-value=3.3e-06  Score=85.57  Aligned_cols=144  Identities=12%  Similarity=-0.055  Sum_probs=112.7

Q ss_pred             cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433          458 KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK  537 (614)
Q Consensus       458 ~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~  537 (614)
                      ....+.++.-+|.-|+..|++..|....++||+.||+   +..+|.-+|..|..+|+.+.|-+.|++|+++.|++.|-  
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV--  105 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV--  105 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--
Confidence            3567789999999999999999999999999999999   99999999999999999999999999999999976653  


Q ss_pred             hcchHHHHHHHHHHHHHHHHHHhhhhhcC--CCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccccCCc
Q 047433          538 RVKIPYYAARMISKHMNALWVFGGARSKI--LSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGK  607 (614)
Q Consensus       538 k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~--~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~~g~  607 (614)
                      .+.+.-+ ..-.++-.++...|+.|+...  ..++....+.+...-+.|...++-+++.|++..+|++.+-.
T Consensus       106 LNNYG~F-LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         106 LNNYGAF-LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hhhhhHH-HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence            3333211 112234466777888887653  22223333444455677888999999999999999987643

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.36  E-value=1.3e-06  Score=95.90  Aligned_cols=72  Identities=24%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMV---LYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~---lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ..+..+..+.+.|+.+++.|+|++|+..|++||+++|++     ..   +|+|+|.||.++|++++|+.++.+|+++.+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~  144 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL  144 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence            456689999999999999999999999999999999998     64   5999999999999999999999999998543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.33  E-value=1.7e-06  Score=69.58  Aligned_cols=66  Identities=23%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      +++.|+|++|+..|++++..+|++     ..++.++|.||++.|++++|...+.+++..+|+   +...+.-++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN-----PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHh
Confidence            467888899999999999998988     888888999999999999999999999888888   655554444

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=5.9e-06  Score=83.35  Aligned_cols=109  Identities=17%  Similarity=0.080  Sum_probs=102.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      .|++++      .|.-+.++|+-+-..|-+.-|--.+++++.+.|..     +..++-+|.-+...|+|+.|...++.++
T Consensus        58 ~l~~ee------RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-----~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          58 ALTDEE------RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             cCChHH------HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-----HHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            666665      45678999999999999999999999999999999     9999999999999999999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++||.   +--++.+||.+++--|+|.-|..|+.++..-+|++
T Consensus       127 ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785         127 ELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             ccCCc---chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence            99999   99999999999999999999999999999998853

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.7e-06  Score=90.41  Aligned_cols=105  Identities=16%  Similarity=0.133  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433          460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV  539 (614)
Q Consensus       460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~  539 (614)
                      .+++-+-+-|.=+++-++|++|+..|++||+++|.   ++--|-+||.||..||+|+.|++|+++++.++|.+.....+.
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            45666777888899999999999999999999999   999999999999999999999999999999998655544444


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          540 KIPYYAARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       540 kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      .+.++.   +++..++...|++|+..++..+
T Consensus       156 G~A~~~---~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLA---LGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHc---cCcHHHHHHHHHhhhccCCCcH
Confidence            554333   3444455555777776655443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.29  E-value=3.5e-05  Score=90.22  Aligned_cols=234  Identities=13%  Similarity=0.062  Sum_probs=154.0

Q ss_pred             hhHHHhhhhhhccccchhhhhcchHHHhHhhhhhcccCCCCCCcchhHHHHhhhcccch--hhHHHHHHHHHhhcccccC
Q 047433          238 CWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGR--KNIAECKQVIENLCNLSRS  315 (614)
Q Consensus       238 c~s~~~~~~~a~~~~~~~~~~~~~~~l~~l~~~wg~l~~~~~~~~~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srs  315 (614)
                      |=.|..=-||+|--.=-..+|  +=|.+-|      ..|+.+|+++++.+-+|--++|+  .|+.+..-+++..|.-+  
T Consensus       164 il~LlGkA~i~ynkkdY~~al--~yyk~al------~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v--  233 (1018)
T KOG2002|consen  164 ILALLGKARIAYNKKDYRGAL--KYYKKAL------RINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV--  233 (1018)
T ss_pred             hHHHHHHHHHHhccccHHHHH--HHHHHHH------hcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--
Confidence            334444567777632222333  2222211      46999999999999999999998  57777787887777444  


Q ss_pred             CCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHH-
Q 047433          316 SDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEE-  394 (614)
Q Consensus       316 sd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~e-  394 (614)
                         -.+-+++-+-+.-.|.+.-.+    +   +..+.                     ..|..   ++.|+.+...|+. 
T Consensus       234 ---~alv~L~~~~l~~~d~~s~~~----~---~~ll~---------------------~ay~~---n~~nP~~l~~LAn~  279 (1018)
T KOG2002|consen  234 ---SALVALGEVDLNFNDSDSYKK----G---VQLLQ---------------------RAYKE---NNENPVALNHLANH  279 (1018)
T ss_pred             ---HHHHHHHHHHHHccchHHHHH----H---HHHHH---------------------HHHhh---cCCCcHHHHHHHHH
Confidence               233333333333333322111    1   11111                     12211   3334444333332 


Q ss_pred             ---------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 047433          395 ---------IWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLY  465 (614)
Q Consensus       395 ---------l~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~ly  465 (614)
                               +|.+-    +...  ..+    ......++.+...|..+...|+|++|-.+|.+++..+|++    -...+
T Consensus       280 fyfK~dy~~v~~la----~~ai--~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~  345 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLA----EHAI--KNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPL  345 (1018)
T ss_pred             HhhcccHHHHHHHH----HHHH--Hhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccc
Confidence                     22222    0000  001    1123367789999999999999999999999999999876    24567


Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCC
Q 047433          466 SNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG----LGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       466 sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG----~yeEAL~df~kALkl~P~~  532 (614)
                      ..+|+.|++.|+++.|+..+.++++..|+   +.+...-+|..|...+    .-+.|.....++++..|.+
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD  413 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence            88999999999999999999999999999   9999999999999887    6788888999999988753

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=9.3e-06  Score=84.93  Aligned_cols=106  Identities=15%  Similarity=0.025  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCC
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR---EPDAAISDATRALCLSNP  494 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG---dyeeAI~D~~~ALeLdP~  494 (614)
                      .++..++.|.-.|..++..|++..|...|++|+++.|++     +..+.-.|.+++...   .-.++..-+++|+++||+
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-----~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~  225 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-----PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA  225 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence            455678899999999999999999999999999999999     999999999988764   467899999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                         ++.+.+-+|..+++.|+|.+|+..+++.+...|-
T Consensus       226 ---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         226 ---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             ---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence               9999999999999999999999999999999884

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.23  E-value=5.9e-06  Score=88.86  Aligned_cols=84  Identities=17%  Similarity=0.133  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+..+|..++..|+|++|+..++++|.++|.+     +.+|.++|.+|+.+|+|++|+..++++++++|+   +..+
T Consensus        35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~---~~~~  106 (356)
T PLN03088         35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSL-----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPG---DSRF  106 (356)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            45578999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcC
Q 047433          502 LWRRSQAYDMKG  513 (614)
Q Consensus       502 yyRRA~Al~~LG  513 (614)
                      ...++.+...+.
T Consensus       107 ~~~l~~~~~kl~  118 (356)
T PLN03088        107 TKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.23  E-value=1.3e-05  Score=74.78  Aligned_cols=98  Identities=16%  Similarity=0.041  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      .......|..++..|+|++|+..|.+++...|+  ......+..++|.+++..|+|++|+..++. +.-.+-   ...++
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~---~~~~~  121 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF---KALAA  121 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch---HHHHH
Confidence            446777899999999999999999999998764  355678899999999999999999999866 222233   67788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFI  526 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kAL  526 (614)
                      ..+|.+|...|++++|+..|++++
T Consensus       122 ~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  122 ELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHhC
Confidence            899999999999999999999875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.22  E-value=7.2e-06  Score=90.18  Aligned_cols=69  Identities=9%  Similarity=-0.037  Sum_probs=66.0

Q ss_pred             hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          452 VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS---LWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       452 l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA---yyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .+|++     +.+++|+|.+|+++|+|++|+..|++||+++|+   +..+   ||++|.+|..+|++++|+.+|++++++
T Consensus        70 ~dP~~-----a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKT-----AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57888     999999999999999999999999999999999   8854   999999999999999999999999997

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.18  E-value=3.2e-05  Score=71.42  Aligned_cols=102  Identities=21%  Similarity=-0.013  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+.+.|..+-..|+.++||..|.++++....  ...+..++.++|.++..+|++++|+.-+++++.-.|++..+.....-
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            5677888999999999999999999997654  34567899999999999999999999999999988876666677777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          505 RSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .+.++..+|+++||+..+..++.-
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            899999999999999999888764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=2.6e-05  Score=80.75  Aligned_cols=109  Identities=12%  Similarity=0.032  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+.+.+-.+++.|+|.+|...|..-|+.-|+.  ...+.+++=++.+++.+|+|++|...|..+++-.|+.+.-+++++
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            448999999999999999999999999999974  455778888999999999999999999999999999777789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+|.+...+|+.++|...|+++++..|+.+.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999996554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.16  E-value=1.2e-05  Score=76.52  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=85.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      +.|.+|-.++|..+-..+...++..+.   ...+.++.+.|.++..+|+|++|+..+++++.+.|+......+|+++|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~   81 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSG---EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI   81 (168)
T ss_pred             cccccccccccccchhhhhHhccCCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence            457778888888888888666654443   34678899999999999999999999999999977622234589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          509 YDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       509 l~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      +..+|++++|+..|++++++.|...+
T Consensus        82 ~~~~g~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         82 HTSNGEHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            99999999999999999999885543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.15  E-value=2.5e-05  Score=68.02  Aligned_cols=72  Identities=14%  Similarity=0.036  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ...+++.|..+++.|++++|+..+.+++..+|+......+++.+|.++...|++++|+..|+.++...|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            356889999999999999999999999999998333368999999999999999999999999999998654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.14  E-value=2e-05  Score=90.40  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCcc
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS--DATRALCLSNPPNSH  498 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~--D~~~ALeLdP~~~~~  498 (614)
                      ..+..+...|..+-.+|++++|.+.|..|+.++|+.     +....-+|.++++.|+..-|..  -...|+++||.   +
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-----v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---n  753 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-----VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---N  753 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---C
Confidence            356678999999999999999999999999999999     9999999999999999888888  99999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .++||.+|.++..+|+.++|..+|+.|+++.+.+
T Consensus       754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999997743

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.13  E-value=2.9e-05  Score=81.21  Aligned_cols=102  Identities=15%  Similarity=-0.024  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSL  502 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAy  502 (614)
                      ..+...|..+...|++++|+..+.+++++.|++     ..++.++|.++...|++++|+..+.+++.+.|.. ......|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            355678889999999999999999999999999     8999999999999999999999999999998752 1234568


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      +.+|.++..+|++++|+..|++++...|
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            8999999999999999999999987765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.13  E-value=8.1e-05  Score=87.28  Aligned_cols=109  Identities=13%  Similarity=0.017  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc-
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH-  498 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~-  498 (614)
                      ...+..+...+|.+|-.|+|+.+...+..+|...-.  ....+..|++.|.+|..+|+|++|...|-++++.+|+   + 
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d---~~  341 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN--KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND---NF  341 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC---Cc
Confidence            345667889999999999999999999999987642  3455778999999999999999999999999999999   6 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      .-+++.+|+.|...|++++|...|+++++..|+..
T Consensus       342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY  376 (1018)
T ss_pred             cccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence            88999999999999999999999999999999643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.13  E-value=4.6e-05  Score=60.24  Aligned_cols=67  Identities=19%  Similarity=0.102  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          464 LYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.++|.++...|++++|+..++++++..|.   +..+++.+|.++...|++++|+..|+++++..|...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            5789999999999999999999999999999   889999999999999999999999999999988543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.12  E-value=5.6e-06  Score=68.64  Aligned_cols=69  Identities=19%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---CCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLS---NPPNS-HCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd---P~~~~-~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      ..+.++.|+|.+|..+|+|++|+..+++|+++.   ++.++ ...+++++|.++..+|++++|+..+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            347788888888888888888888888888652   21111 3678888888888888888888888888876

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.6e-05  Score=88.77  Aligned_cols=109  Identities=16%  Similarity=0.004  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcc--hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKN--ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~--~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~  497 (614)
                      +..+-.+.+.|-.+|..+.|.+|+..+..++..-+....+  .-...++|+|.++.++++|++||..+++||.+.|.   
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---  487 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---  487 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---
Confidence            3344568888999999999999999999999554432211  23567999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++..|--.|.+|..+|+++.|+..|.++|-+.|+
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999985

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.11  E-value=5.3e-05  Score=72.60  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             hhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          451 GVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       451 el~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .+.|.+.+...+.++.++|..+...|++++|+..++++++++|+.+....+++.+|.++..+|++++|+..|+++++..|
T Consensus        24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            33333334455889999999999999999999999999999876322357999999999999999999999999999988


Q ss_pred             CC
Q 047433          531 RS  532 (614)
Q Consensus       531 ~~  532 (614)
                      +.
T Consensus       104 ~~  105 (172)
T PRK02603        104 KQ  105 (172)
T ss_pred             cc
Confidence            54

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.10  E-value=4.3e-05  Score=90.62  Aligned_cols=103  Identities=11%  Similarity=-0.071  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+.....++-..++.|+|.+|+..|.++++.+|.+     +....-.+..+...|++++|+..+++++.-+|.   +..+
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~---~~~~  104 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI---SSRG  104 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC---CHHH
Confidence            34467788888888999999999999999988887     433336777777888888888888888822233   4444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +.-.|.++..+|++++|+..|+++++.+|++
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4444778888888888888888888888864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.10  E-value=7e-05  Score=78.31  Aligned_cols=67  Identities=18%  Similarity=0.020  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ...+.++|.++...|++++|+..++++++++|+   +..++..+|.+++..|++++|+..+++++...|.
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            456678899999999999999999999999999   8999999999999999999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.04  E-value=0.0011  Score=75.01  Aligned_cols=228  Identities=17%  Similarity=0.049  Sum_probs=144.9

Q ss_pred             HHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhcc-----ChhHHHHHHHHHHHHhhchhhhhhcc
Q 047433          286 IRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLK-----DPDTRYKVIETAALFLIDLVELNSLL  358 (614)
Q Consensus       286 ~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llk-----d~~try~v~dka~~aLvDLseL~~Lg  358 (614)
                      .|-=|+.++||  +|...|+..|+.+|+=.     -.|.++-+.+.+..     +...+...++......|.....+.+-
T Consensus        43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-----~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~  117 (517)
T PF12569_consen   43 KRAELLLKLGRKEEAEKIYRELIDRNPDNY-----DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP  117 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh
Confidence            45568899999  78899999998887544     45566666663333     45667788888777777655554443


Q ss_pred             CCCcCcHHHHHHHHHHhhhhhhh--cc----------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHH--HH
Q 047433          359 DRPKNLGEAITRALLLDYKLTEQ--KF----------KNKKVQKALEEIWELKVERRKREKMMMMSEEK-VEEMRV--LV  423 (614)
Q Consensus       359 ~~~k~lGe~it~aLl~dy~~~~~--~p----------~n~e~~~aL~el~~lkvEr~erEk~~~ls~ee-l~~~~~--~A  423 (614)
                      =. ...|+.|...+.........  .|          .+..-...+..+..-.+...+...  .++..+ ......  ..
T Consensus       118 L~-~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~--~~~~~~~~~~~~p~~~l  194 (517)
T PF12569_consen  118 LD-FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG--SFSNGDDEEKEPPSTLL  194 (517)
T ss_pred             cc-cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC--CCCCccccccCCchHHH
Confidence            33 33467775444322211111  11          111111222222221111111111  111110 000011  12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      -.+.-.+..+-..|++++|++..++||+..|+.     +.+|.-+|.+|-+.|++.+|....+.|-.+|+.   .--.--
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNs  266 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----VELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINS  266 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHH
Confidence            345666777878999999999999999999998     999999999999999999999999999999988   555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      ..+..+...|+.++|.+.+..+.+..
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            66778888899999999888886664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.00  E-value=0.00011  Score=85.49  Aligned_cols=101  Identities=17%  Similarity=0.058  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+..++|.+|-.|++++|.....++|..+|..     ..+|.-+|.+|-.+|+.++|+.....|--|+|+   +..-
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~  209 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYEL  209 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHH
Confidence            35678889999999999999999999999999998     888888888888777766666666666666666   5556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |.+.+.....+|++++|.-+|.+|++..|
T Consensus       210 W~~ladls~~~~~i~qA~~cy~rAI~~~p  238 (895)
T KOG2076|consen  210 WKRLADLSEQLGNINQARYCYSRAIQANP  238 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence            66666666666666666666666666655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.99  E-value=9.5e-05  Score=83.59  Aligned_cols=108  Identities=19%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCC---------------------------------------cc
Q 047433          422 LVGLIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRP---------------------------------------KN  459 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~---------------------------------------~~  459 (614)
                      .|-.+..+|..++..++   +..|+.+|++||+++|++.                                       ..
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            34456666666665544   6677777777777777750                                       00


Q ss_pred             hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..+.+|.-+|..+...|++++|...+++|+.++|+    ..+|..+|.++...|++++|+..|++|+.++|..+
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            00233444455555566666666666666666665    35666666666666666666666666666666433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=3.9e-05  Score=81.34  Aligned_cols=139  Identities=15%  Similarity=0.086  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+---|..+|-.++.+-|+..|.+.|.+--.+     +++|.|.|.|.+--++|+-++..+.+|+..-.+..-..+.||+
T Consensus       326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN  400 (478)
T KOG1129|consen  326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN  400 (478)
T ss_pred             eeeeeeeccccCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence            34445677899999999999999999998888     9999999999999999999999999999876532236789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPV  571 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~  571 (614)
                      +|.+....|++.-|..+|+-++..+|++..+-  ..+. ..+...++-.++.-++..|-++.+....
T Consensus       401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal--nNLa-vL~~r~G~i~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL--NNLA-VLAARSGDILGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             cceeEEeccchHHHHHHHHHHhccCcchHHHH--HhHH-HHHhhcCchHHHHHHHHHhhhhCccccc
Confidence            99999999999999999999999988655443  2332 2223344445666666666555544333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.97  E-value=2.8e-05  Score=64.43  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS  492 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd  492 (614)
                      ..+..+...|..++..|+|++|+..|.+++++....  .....+.++.|+|.||..+|++++|+..+++|+++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            356789999999999999999999999999873111  234568999999999999999999999999999863

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.95  E-value=0.00015  Score=81.63  Aligned_cols=146  Identities=14%  Similarity=0.005  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS---RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP--  494 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~---~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~--  494 (614)
                      +..+..++..|+.+...++|.+|+..|.+|+.+--.   ...+-.+..+.|+|..|.+.|+|.+|...|++|++|-..  
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~  317 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL  317 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence            345666778999999999999999999999987432   124556899999999999999999999999999987422  


Q ss_pred             ---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCC---hHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433          495 ---PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI---RSET---TSKRVKIPYYAARMISKHMNALWVFGGARSK  565 (614)
Q Consensus       495 ---~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P---~~~D---~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k  565 (614)
                         .+.-...+-..+.++..++++++|+..+++++++.-   +..+   +..+..+. ......++..++...|++|+++
T Consensus       318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~-~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA-ELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHHHHhcchhHHHHHHHHHHHH
Confidence               011346777889999999999999999999998743   2222   11122233 3444567778888999999987


Q ss_pred             C
Q 047433          566 I  566 (614)
Q Consensus       566 ~  566 (614)
                      .
T Consensus       397 ~  397 (508)
T KOG1840|consen  397 L  397 (508)
T ss_pred             H
Confidence            5

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.95  E-value=0.00011  Score=84.22  Aligned_cols=108  Identities=10%  Similarity=0.027  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ....|...|-.+.+.++++.|+..|+.++.++|++     .++|+|.+.+|+++++-.+|....++|++-+..   +.+.
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-----~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~i  589 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-----AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQI  589 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-----hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCee
Confidence            34579999999999999999999999999999999     999999999999999999999999999999988   8999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK  537 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~  537 (614)
                      |-+--.+....|++++|+..|.+.+.+..++.|+.+
T Consensus       590 WENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v  625 (777)
T KOG1128|consen  590 WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV  625 (777)
T ss_pred             eechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence            999999999999999999999999998776666554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.94  E-value=3.4e-05  Score=75.84  Aligned_cols=85  Identities=20%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE----------PDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd----------yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      |+.|.+.|......+|.+     +..++|-|.+++.+.+          +++||+-++.||.|+|+   ...|+|.+|.|
T Consensus         7 FE~ark~aea~y~~nP~D-----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA   78 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD-----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA   78 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh-----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence            788999999999999999     9999999999998743          67899999999999999   99999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHHcCCC
Q 047433          509 YDMKGL-----------GRESLMDCIMFINGCIR  531 (614)
Q Consensus       509 l~~LG~-----------yeEAL~df~kALkl~P~  531 (614)
                      |..++.           |++|...|++|...+|+
T Consensus        79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            998764           88999999999999985

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.94  E-value=0.00058  Score=74.32  Aligned_cols=208  Identities=13%  Similarity=-0.011  Sum_probs=103.1

Q ss_pred             CCCCcchhHHHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhh
Q 047433          277 HNSPAGVGLIRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVEL  354 (614)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL  354 (614)
                      ++..-++++..+--+...|.  .|.+.+..+++..|+-.     +....+..+....+|++....++.+.....+.-.+-
T Consensus       149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~  223 (398)
T PRK10747        149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH  223 (398)
T ss_pred             CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence            33333455554444445555  78888888888888776     777777777777788887777666555443321110


Q ss_pred             -hhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 047433          355 -NSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHL  433 (614)
Q Consensus       355 -~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~l  433 (614)
                       .++.      +..+.. +...-.   ...    ..+.+...|..            ++...    +..+......+..+
T Consensus       224 ~~~l~------~~a~~~-l~~~~~---~~~----~~~~l~~~w~~------------lp~~~----~~~~~~~~~~A~~l  273 (398)
T PRK10747        224 RAMLE------QQAWIG-LMDQAM---ADQ----GSEGLKRWWKN------------QSRKT----RHQVALQVAMAEHL  273 (398)
T ss_pred             HHHHH------HHHHHH-HHHHHH---Hhc----CHHHHHHHHHh------------CCHHH----hCCHHHHHHHHHHH
Confidence             0000      000000 000000   000    01112222211            11110    11333444555556


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433          434 FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       434 Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG  513 (614)
                      ...|+.++|.....++++. |.+     ..+..-.+.  +..+++++++..+++.++.+|+   ++..++-.|.++...|
T Consensus       274 ~~~g~~~~A~~~L~~~l~~-~~~-----~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~---~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        274 IECDDHDTAQQIILDGLKR-QYD-----ERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGD---TPLLWSTLGQLLMKHG  342 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc-CCC-----HHHHHHHhh--ccCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCC
Confidence            6666666666666666663 322     222211111  2335666666666666666666   5666666666666666


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 047433          514 LGRESLMDCIMFINGCI  530 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P  530 (614)
                      ++++|...|+++++..|
T Consensus       343 ~~~~A~~~le~al~~~P  359 (398)
T PRK10747        343 EWQEASLAFRAALKQRP  359 (398)
T ss_pred             CHHHHHHHHHHHHhcCC
Confidence            66666666666666655

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=1.3e-05  Score=85.47  Aligned_cols=107  Identities=22%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC-----------CcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP---SR-----------PKNERMVLYSNRAQCHLLLREPDAAISDATR  487 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P---~~-----------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~  487 (614)
                      .++..++.||..|+.++|..|...|.+++..-.   ..           ....+...+.|.+.|-++++.+..|+-.+..
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            555788999999999999999999999987532   11           1245667889999999999999999999999


Q ss_pred             HHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       488 ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +++.++.   .+++|||+++++..+.++++|++++..+....|.
T Consensus       301 ~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~  341 (372)
T KOG0546|consen  301 ALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN  341 (372)
T ss_pred             ccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence            9999999   9999999999999999999999999999999884

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0021  Score=68.39  Aligned_cols=133  Identities=14%  Similarity=0.051  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCHHH-HHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchh
Q 047433          389 QKALEEIWELKVERRKREKMMMMSEEK-VEE------MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNER  461 (614)
Q Consensus       389 ~~aL~el~~lkvEr~erEk~~~ls~ee-l~~------~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~  461 (614)
                      ..++..+..+.....+|+|  ++...+ +.+      +.+.|.-+-+.+..+....+++.|+....+|++.+|+.     
T Consensus       141 ~~AlqqLl~IYQ~treW~K--AId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-----  213 (389)
T COG2956         141 EGALQQLLNIYQATREWEK--AIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-----  213 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHH--HHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-----
Confidence            4455556665555667887  444433 211      46678889999999999999999999999999999998     


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC-KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~-KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +.+-.-+|.+++..|+|++|+..+..+++-||.   +. ...-.+..||..+|+.++.+..+.++.+..++
T Consensus       214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         214 VRASIILGRVELAKGDYQKAVEALERVLEQNPE---YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             eehhhhhhHHHHhccchHHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            778888999999999999999999999999998   54 67778899999999999999999999999874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00025  Score=77.03  Aligned_cols=100  Identities=19%  Similarity=0.044  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ...+.+.+-.+.+.++|.+|+..-+++|+++|++     ..+++.||.|++.+|+|+.|+.|+.+|++++|.   |-.+.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~  328 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-----VKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAAR  328 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHH
Confidence            3456778888899999999999999999999999     999999999999999999999999999999999   87777


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHcCC
Q 047433          503 WRRSQAYDMKGLGRES-LMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~Al~~LG~yeEA-L~df~kALkl~P  530 (614)
                      ..+..+.....++.+. .+.|...+...+
T Consensus       329 ~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  329 AELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            7777777666666655 556777666644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.91  E-value=0.00051  Score=64.08  Aligned_cols=101  Identities=15%  Similarity=0.052  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..........+..++...+...+++.++-.|..  .....+...+|.+++..|++++|+..++.++.-.|+......+
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            55667777888888999999999999999988864  3446778889999999999999999999999988764445679


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~k  524 (614)
                      .+|+|.++..+|++++|+..++.
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999866

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.89  E-value=0.0029  Score=71.46  Aligned_cols=229  Identities=18%  Similarity=0.108  Sum_probs=142.6

Q ss_pred             CCCCCcchhHHHHhhh--cccch--hhHHHHHHHHHhhcccccCCCcchhhh-------hhHHHHhccChhHHHHHHHHH
Q 047433          276 NHNSPAGVGLIRILCY--SKTGR--KNIAECKQVIENLCNLSRSSDDWQYMG-------IDCLLFLLKDPDTRYKVIETA  344 (614)
Q Consensus       276 ~~~~~~~~~~~~~~~~--~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~-------idcll~Llkd~~try~v~dka  344 (614)
                      +..+|.=++.++.|-.  ...||  +|+--|+.+|+.+|+..=    ..+..       ++-++.-++....+.-.|.+|
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G----~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A  267 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG----LKHLVVASMLNILALVYRSLGKYDEAVNLYEEA  267 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC----ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3456666565655543  34455  699999999999877663    11221       222223333333333334443


Q ss_pred             HHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 047433          345 ALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVG  424 (614)
Q Consensus       345 ~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~  424 (614)
                      .....   +  ..|+.-..++..+..--...++.    -...++..-..+..++.    ++..  ..+.      .+.+.
T Consensus       268 L~i~e---~--~~G~~h~~va~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~----~~~~--~~~~------~~v~~  326 (508)
T KOG1840|consen  268 LTIRE---E--VFGEDHPAVAATLNNLAVLYYKQ----GKFAEAEEYCERALEIY----EKLL--GASH------PEVAA  326 (508)
T ss_pred             HHHHH---H--hcCCCCHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHH----HHhh--ccCh------HHHHH
Confidence            33322   1  22444122222222211111221    12333444444444444    1111  2222      33567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-----CC
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCP---SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP-----PN  496 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P---~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~-----~~  496 (614)
                      .+.+.+..+-.+++|++|+..|.+++++--   .......+..+.|+|.+|+++|+|++|...+..||.+.-.     +.
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            889999999999999999999999998753   3223467889999999999999999999999999987521     11


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      ...+.++++|.++..++.+.+|...|.+++...
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            146899999999999999999999999998663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.89  E-value=6.9e-05  Score=72.31  Aligned_cols=100  Identities=7%  Similarity=-0.161  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      ....+-.|.-++..|++++|++.++....+||.   +...|+.+|.++..+|+|++|+..|.+++.++|+++.+..+...
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            777888999999999999999999999999999   99999999999999999999999999999999976655433332


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433          542 PYYAARMISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       542 ~~y~~r~i~Kqmea~~lF~~Ai~k~~  567 (614)
                      -   .-.+++.-.+...|+.++....
T Consensus       112 c---~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 C---YLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             H---HHHcCCHHHHHHHHHHHHHHhc
Confidence            2   2235555667788999988764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.88  E-value=0.00019  Score=83.69  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433          413 EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS  492 (614)
Q Consensus       413 ~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd  492 (614)
                      .|-+.+.+.....+...|..+-+.|+.+.|......|-.++|.+     ...|.-.+.-..++|.+..|+-.|++||+++
T Consensus       163 ~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d-----~e~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  163 MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD-----YELWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            34444555677789999999999999999999999999999999     8999999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       493 P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |.   +.+.+|+|+..|.++|++..|+..|.+.+.++|
T Consensus       238 p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  238 PS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             Cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99   999999999999999999999999999999998

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.86  E-value=2.9e-06  Score=90.05  Aligned_cols=191  Identities=12%  Similarity=-0.034  Sum_probs=136.7

Q ss_pred             hhHHHHHHHHHHHHhhchhhhhhccCCCcCc-H-HHHH-------HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHH
Q 047433          334 PDTRYKVIETAALFLIDLVELNSLLDRPKNL-G-EAIT-------RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERR  403 (614)
Q Consensus       334 ~~try~v~dka~~aLvDLseL~~Lg~~~k~l-G-e~it-------~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~  403 (614)
                      |+.+|.-+.+.+.+-+|..+-..|....-+. . ....       .....||+.+.. .|++.++...+..+..++ |+.
T Consensus       137 RA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-E~~  215 (536)
T KOG4648|consen  137 RALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR-ERK  215 (536)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-hhh
Confidence            4556666666666666666655443220000 0 0000       111156666655 788888888888777766 222


Q ss_pred             HHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHH
Q 047433          404 KREKMMMMSE-EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAI  482 (614)
Q Consensus       404 erEk~~~ls~-eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI  482 (614)
                      -.++  .... .+.......+...+..|+.+++.|.|+-||..|+..+.....+     ..+..| +..|.+.-+|+.|+
T Consensus       216 I~~K--sT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~-----~~L~~~-~~~~~KI~~~~~~~  287 (536)
T KOG4648|consen  216 IATK--STPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS-----NQLRIS-DEDIDKIFNSNCGI  287 (536)
T ss_pred             HHhh--cCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCcc-----ccCccc-HHHHHHHhhcchhH
Confidence            2222  1111 0011222344457899999999999999999999999988776     667777 99999999999999


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          483 SDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       483 ~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      .+|.+++-++|.   +.++.-+++.+...+|...|+..+++.++.+.|+...+.
T Consensus       288 ~~~~~~~~~~~s---~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~  338 (536)
T KOG4648|consen  288 IEEVKKTNPKPT---PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK  338 (536)
T ss_pred             HHHHHhcCCCCC---cCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence            999999999999   999999999999999999999999999999999766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.86  E-value=0.00015  Score=82.99  Aligned_cols=101  Identities=14%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+.+....|+..+..++|++|...++.+++++|-.     ...|+++|.|.+++++++.|..+|++.+.++|+   +..+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-----~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~ea  555 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-----LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEA  555 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhh
Confidence            44456667777888899999999999999999998     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |.+++.+|..+|+-.+|...+.++++.+-
T Consensus       556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  556 WNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             hhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999963

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.85  E-value=2.9e-05  Score=62.46  Aligned_cols=57  Identities=18%  Similarity=-0.013  Sum_probs=53.5

Q ss_pred             HHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          472 HLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       472 ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +++.|+|++|+..+++++..+|+   +..+++.+|.+|...|++++|...+.+++...|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            46789999999999999999999   9999999999999999999999999999999884

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00051  Score=74.82  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcH------------------
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPD------------------  479 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdye------------------  479 (614)
                      ........+..+|+.+...|+.++|+-.|..|+.+.|..     ..+|..+-.||+..|++.                  
T Consensus       329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            334466789999999999999999999999999999987     777777777777655544                  


Q ss_pred             ------------------HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          480 ------------------AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       480 ------------------eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                                        +|...++++|+++|.   +.+|-..+|..+..-|.+++++..+++.+...|+
T Consensus       404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D  470 (564)
T KOG1174|consen  404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD  470 (564)
T ss_pred             hhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence                              466667777788888   8999999999999999999999999999998874

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.81  E-value=0.00064  Score=74.55  Aligned_cols=91  Identities=21%  Similarity=0.150  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ  507 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~  507 (614)
                      ..+..++..++-.+|+....++|...|.+     ..++.--|..+++.++|+.|+..+++|+++.|.   ..++|+.++.
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~La~  276 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQLAE  276 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHHHHH
Confidence            35666667788899999999999999999     999999999999999999999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 047433          508 AYDMKGLGRESLMDCIMFI  526 (614)
Q Consensus       508 Al~~LG~yeEAL~df~kAL  526 (614)
                      +|..+|++++|+..++.+-
T Consensus       277 ~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  277 CYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHhcCCHHHHHHHHhcCc
Confidence            9999999999997665443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=0.00018  Score=79.52  Aligned_cols=99  Identities=22%  Similarity=0.101  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +--+-..|..+++.++.++|++.+.+++.+.|..     ..+..|+|++|++.|++.+||...++.+.-+|+   ++..|
T Consensus       340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w  411 (484)
T COG4783         340 PYYLELAGDILLEANKAKEAIERLKKALALDPNS-----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGW  411 (484)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHH
Confidence            3355667888999999999999999999999998     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      ..+|++|..+|+-.+|...+-+.+.+.
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            999999999999999998888888774

>TIGR00540 hemY_coli hemY protein

Probab=97.77  E-value=0.0046  Score=67.49  Aligned_cols=193  Identities=9%  Similarity=-0.132  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhh
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY  376 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy  376 (614)
                      .|.+..+.+++..|+-.     +......-+.+..+|++.....+.+.....+          .   .+..+.......+
T Consensus       171 ~Al~~l~~l~~~~P~~~-----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~----------~---~~~~~~~l~~~a~  232 (409)
T TIGR00540       171 AARHGVDKLLEMAPRHK-----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL----------F---DDEEFADLEQKAE  232 (409)
T ss_pred             HHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----------C---CHHHHHHHHHHHH
Confidence            67788888888887766     7777888888888888776665544433311          0   0111111111111


Q ss_pred             hhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433          377 KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR  456 (614)
Q Consensus       377 ~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~  456 (614)
                      ......-........+...+.            ..+.+    .+.........|..+...|++++|+..+.++++..|++
T Consensus       233 ~~~l~~~~~~~~~~~L~~~~~------------~~p~~----~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~  296 (409)
T TIGR00540       233 IGLLDEAMADEGIDGLLNWWK------------NQPRH----RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD  296 (409)
T ss_pred             HHHHHHHHHhcCHHHHHHHHH------------HCCHH----HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence            000000000001112222222            12211    11244567778899999999999999999999999987


Q ss_pred             CcchhHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCC
Q 047433          457 PKNERMVL--YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC--KSLWRRSQAYDMKGLGRESLMDCI--MFINGCI  530 (614)
Q Consensus       457 ~~~~~a~l--ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~--KAyyRRA~Al~~LG~yeEAL~df~--kALkl~P  530 (614)
                           ...  ..-+....+..++..+++..++++++.+|+   ++  ..+.-+|.+++..|++++|.+.|+  .+++..|
T Consensus       297 -----~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p  368 (409)
T TIGR00540       297 -----RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL  368 (409)
T ss_pred             -----ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence                 321  122334445568899999999999999999   88  778899999999999999999999  5778877


Q ss_pred             C
Q 047433          531 R  531 (614)
Q Consensus       531 ~  531 (614)
                      +
T Consensus       369 ~  369 (409)
T TIGR00540       369 D  369 (409)
T ss_pred             C
Confidence            4

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.76  E-value=0.0019  Score=67.19  Aligned_cols=190  Identities=15%  Similarity=0.010  Sum_probs=119.7

Q ss_pred             hhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHH
Q 047433          321 YMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKV  400 (614)
Q Consensus       321 y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkv  400 (614)
                      |...+......++.+..-.++.++..+...      +++. ...+..+..+.. .|++.    +..++...+.+..++..
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~------~~~~-~~Aa~~~~~Aa~-~~k~~----~~~~Ai~~~~~A~~~y~  105 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK------LGDK-FEAAKAYEEAAN-CYKKG----DPDEAIECYEKAIEIYR  105 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH------TT-H-HHHHHHHHHHHH-HHHHT----THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHH------cCCH-HHHHHHHHHHHH-HHHhh----CHHHHHHHHHHHHHHHH
Confidence            444455556666666666666666555432      2222 333444443332 23331    22233333333333331


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCc
Q 047433          401 ERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWL-GEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREP  478 (614)
Q Consensus       401 Er~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~-GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdy  478 (614)
                      +..+              ....+..+.+.|..+... |++++|++.|.+|+++.... .......++.+.|.++.++|+|
T Consensus       106 ~~G~--------------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y  171 (282)
T PF14938_consen  106 EAGR--------------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY  171 (282)
T ss_dssp             HCT---------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred             hcCc--------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence            0111              122577888889988888 99999999999999985332 3445678899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC---CccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          479 DAAISDATRALCLSNPP---NSHCK-SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       479 eeAI~D~~~ALeLdP~~---~~~~K-AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      ++|+..++++....-..   ..+++ .+++.+.|+...|++..|...|++....+|+-.++.
T Consensus       172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~  233 (282)
T PF14938_consen  172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR  233 (282)
T ss_dssp             HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            99999999998754321   22454 456788899999999999999999999998766543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.75  E-value=0.00041  Score=64.36  Aligned_cols=103  Identities=21%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------c
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-------NERMVLYSNRAQCHLLLREPDAAISDATRALC-------L  491 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-------~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-------L  491 (614)
                      ...+|....+.|-|++|...|.+|+++.-+-+.       ..-+.+|.-++.++..+|+|++++....++|.       |
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            345667778899999999999999987644211       12367899999999999999999999999984       5


Q ss_pred             CCCC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          492 SNPP-NSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       492 dP~~-~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +.+. +.++.+.++||.++..+|+.+||+..|+++.++
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            5552 446778899999999999999999999999887

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.74  E-value=0.00029  Score=72.64  Aligned_cols=107  Identities=12%  Similarity=0.064  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      ....+.+...|+-+.+...-+++....|.+     ..++.-.+...+..|+|..|+..+++|..++|+   +.++|.-+|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---d~~~~~~lg  141 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKD-----RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---DWEAWNLLG  141 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCccc-----HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---ChhhhhHHH
Confidence            666778888888888888888887778887     777777899999999999999999999999999   999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          507 QAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       507 ~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      .+|.++|++++|-..|.+++++.|+.+.+-.+..+
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            99999999999999999999999976655434443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.71  E-value=0.00037  Score=77.01  Aligned_cols=105  Identities=14%  Similarity=0.049  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .....+..+...+..|++++|....+..|...|++     +.+..-++..+++.++..+|++-+++++.++|.   ..-.
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l  376 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLL  376 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHH
Confidence            34467888899999999999999999999999999     999999999999999999999999999999999   8889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+.+|++|.+.|++.+|+..++..+.-+|.+++
T Consensus       377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            999999999999999999999999999885443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.70  E-value=0.00027  Score=83.91  Aligned_cols=88  Identities=13%  Similarity=-0.019  Sum_probs=45.7

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL  514 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~  514 (614)
                      ..|++++|+..+++++.-.|..     ...+...|..|..+|+|++|+..++++++.+|+   +..+++-++.++..+++
T Consensus        80 ~~G~~~~A~~~~eka~~p~n~~-----~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q  151 (822)
T PRK14574         80 WAGRDQEVIDVYERYQSSMNIS-----SRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGR  151 (822)
T ss_pred             HcCCcHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCC
Confidence            3455555555555555222222     223333344555555555555555555555555   55555555555555555


Q ss_pred             HHHHHHHHHHHHHcCC
Q 047433          515 GRESLMDCIMFINGCI  530 (614)
Q Consensus       515 yeEAL~df~kALkl~P  530 (614)
                      .++|+..++++.+.+|
T Consensus       152 ~~eAl~~l~~l~~~dp  167 (822)
T PRK14574        152 GGVVLKQATELAERDP  167 (822)
T ss_pred             HHHHHHHHHHhcccCc
Confidence            5555555555555554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.66  E-value=0.0017  Score=67.09  Aligned_cols=130  Identities=13%  Similarity=0.052  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      -+..|.++|....+.|+|++|+..|.......|..  +....+....+.++++.++|+.|+...++=+.+.|+++--.-+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            35589999999999999999999999999988864  4446788889999999999999999999999999994334468


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHH
Q 047433          502 LWRRSQAYDMK--------GLGRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHM  553 (614)
Q Consensus       502 yyRRA~Al~~L--------G~yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqm  553 (614)
                      +|-+|.+++..        .-..+|+.+|+.++...|+++= ++++.++.+...++-++.|
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em  171 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM  171 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            88899987763        4457899999999999998864 4555555555555544444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00077  Score=74.00  Aligned_cols=64  Identities=14%  Similarity=0.028  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +.+..|.+..-+..|++++|...|+.||.-|..   .+.|+|+.|..+..+|+.++|+..|.+.-.+
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~klh~i  553 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKLHAI  553 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence            555566666666677777777777777777777   7778888888888888888888777765544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00011  Score=80.39  Aligned_cols=103  Identities=15%  Similarity=0.049  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+.++||..|..|+++.|.+.|.+||.-+...     ..+++|.+..+-++|+.++|+..+-+.-.+--+   ++..
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----~ealfniglt~e~~~~ldeald~f~klh~il~n---n~ev  560 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----TEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEV  560 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHH
Confidence            45678899999999999999999999999988877     899999999999999999999999887666666   7899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +++.+.+|..+.+..+|++.+-++..+-|++
T Consensus       561 l~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999999999998853

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.0036  Score=66.68  Aligned_cols=105  Identities=15%  Similarity=-0.003  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .++...-+.+-+..+|+.||+.-++...+.+...+.+++.+|.-+|+.++...+.+.|+....+|++-||+   .+.|=.
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAsi  218 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRASI  218 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehhh
Confidence            35667777888889999999999999999999888999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      -+|.++...|+|+.|++.++.+++.+|.
T Consensus       219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         219 ILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             hhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            9999999999999999999999999873

>TIGR00540 hemY_coli hemY protein

Probab=97.62  E-value=0.00094  Score=72.83  Aligned_cols=98  Identities=16%  Similarity=0.041  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERM-VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a-~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .+...|..+...|+++.|...|.++.+..|+.     . .+...++..++..|+++.|+..+++.++..|+   +..++.
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-----~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~  191 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGND-----NILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLK  191 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHH
Confidence            45677888999999999999999999988876     3 35555699999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      -.+.++...|++++|+..+.+.++..+
T Consensus       192 ll~~~~~~~~d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       192 LAEEAYIRSGAWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            999999999999999999999998854

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=97.61  E-value=0.00062  Score=75.36  Aligned_cols=131  Identities=11%  Similarity=-0.061  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhCCCCCcchhHHHHHHHHHHHHHc---------CCcHHHHHHHHHHH
Q 047433          425 LIKQEAKHLFWLGE---IEEAAMKYTEAL---GVCPSRPKNERMVLYSNRAQCHLLL---------REPDAAISDATRAL  489 (614)
Q Consensus       425 ~lK~~GN~lFk~Gd---yeeAI~~YtkAI---el~P~~~~~~~a~lysNRA~~ylkL---------GdyeeAI~D~~~AL  489 (614)
                      .+..+|...+..+.   .+.|+..+++|+   +++|.+     +.+|.-+|.||+..         .+-.+|...+++|+
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~-----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK-----TECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc-----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            45777877766664   568999999999   999999     99999999999875         24567889999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      ++||.   ++.+++.+|.++...|+++.|...|++++.++|++.+...   ..-...-+-++..++...+.+++..+
T Consensus       332 eld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~---~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        332 DITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYY---YRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             hcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHH---HHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            99999   9999999999999999999999999999999996554321   11122222344444555555554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.58  E-value=0.014  Score=63.75  Aligned_cols=131  Identities=9%  Similarity=-0.096  Sum_probs=86.8

Q ss_pred             hhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          451 GVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       451 el~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ...|++     +.++...|..+...|+.++|.....++++..|+    .....-.+.+  ..++.+++++.+++.++..|
T Consensus       257 ~~~~~~-----~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~----~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        257 RKTRHQ-----VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD----ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HHHhCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----HHHHHHHhhc--cCCChHHHHHHHHHHHhhCC
Confidence            334556     889999999999999999999999999995444    4443333333  44999999999999999999


Q ss_pred             CCCChHhhcchHHHHHHHHHH---HHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHh
Q 047433          531 RSETTSKRVKIPYYAARMISK---HMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMME  599 (614)
Q Consensus       531 ~~~D~~~k~kl~~y~~r~i~K---qmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~  599 (614)
                      ++.  ....    ...++.-+   --.+...|..+.+..++. .....-.......|..+++.+.+.+.+..
T Consensus       326 ~~~--~l~l----~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        326 DTP--LLWS----TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCH--HHHH----HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            543  3222    22222211   234556677776665443 22233444556677777777777776553

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.0015  Score=65.79  Aligned_cols=68  Identities=19%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+.-+-++|-.+.+.+.++.||...++||++.|.+     -.++..||.+|-++..|++|+.||.+.++++|.
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-----~kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-----EKALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            44567889999999999999999999999999999     888999999999999999999999999999999

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00042  Score=77.75  Aligned_cols=97  Identities=14%  Similarity=0.053  Sum_probs=46.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCccHHHHHHH
Q 047433          430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----SNPPNSHCKSLWRR  505 (614)
Q Consensus       430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~~~~KAyyRR  505 (614)
                      |-++...++++-|-..|.+|+.++|.+     +..+.-.|.+.+..+.|.+|+..+..++..    ++....+.-.+.++
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL  461 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL  461 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence            344444444444444444444555554     444555555555555555555555555421    11111122234455


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      |.++.+++++++|+..|+++|.++|+
T Consensus       462 GH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  462 GHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            55555555555555555555555554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.53  E-value=0.00046  Score=82.17  Aligned_cols=140  Identities=10%  Similarity=0.044  Sum_probs=99.4

Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcch-
Q 047433          382 KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE-  460 (614)
Q Consensus       382 ~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~-  460 (614)
                      .|.+.++...|....... .+.+...  .+..+.++..+.....+.-.|-.+++.+++.+|...  .++.+-+.+.+.. 
T Consensus        27 ~p~n~~a~~~Li~~~~~~-~~~deai--~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSE-NLTDEAK--DICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CcchHHHHHHHHHHHHhc-CCHHHHH--HHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            455555555554444211 1222222  344444445555666777777777777777776666  5665555441000 


Q ss_pred             -------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          461 -------------RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       461 -------------~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                                   ...++..+|.||-++|++++|+..++++|++||+   ++.++-+.|..|... +.++|+..+.+|+.
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence                         0368889999999999999999999999999999   999999999999999 99999999999987


Q ss_pred             cCC
Q 047433          528 GCI  530 (614)
Q Consensus       528 l~P  530 (614)
                      ..-
T Consensus       178 ~~i  180 (906)
T PRK14720        178 RFI  180 (906)
T ss_pred             HHH
Confidence            743

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.53  E-value=0.00071  Score=70.34  Aligned_cols=104  Identities=13%  Similarity=-0.040  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhc
Q 047433          462 MVLYSNRAQCH-LLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRV  539 (614)
Q Consensus       462 a~lysNRA~~y-lkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~  539 (614)
                      ....++.|..+ ++.|+|++|+..|+..++..|+.+....++|.+|.+|+..|++++|+..|+++++..|+++. +++..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46678888887 66899999999999999999994333689999999999999999999999999999997654 22222


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          540 KIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       540 kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      ++. ......++.-.+...|..++...
T Consensus       222 klg-~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        222 KVG-VIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHH-HHHHHcCCHHHHHHHHHHHHHHC
Confidence            222 11112233344555555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.53  E-value=0.00014  Score=51.33  Aligned_cols=32  Identities=25%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+|+|+|.+|+.+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.52  E-value=0.00021  Score=82.63  Aligned_cols=115  Identities=23%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhc
Q 047433          414 EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL--REPDAAISDATRALCL  491 (614)
Q Consensus       414 eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL--GdyeeAI~D~~~ALeL  491 (614)
                      ++.......+...+.+||.+|+.++|.+|...|..++.+-|.+ ....+..+.|++.||+.+  |+|..++.+|+-|+..
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~  122 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYMQLGLGEYPKAIPECELALES  122 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence            4555566688899999999999999999999999999999964 667789999999999875  7999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          492 SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .|.   ..+++++|+.+|..++.++-|++|+.-..+..|+.
T Consensus       123 ~p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  123 QPR---ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             cch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999   99999999999999999999999988888888864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.50  E-value=0.0022  Score=59.39  Aligned_cols=102  Identities=20%  Similarity=0.111  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-----------------cchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-----------------KNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-----------------~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      ..+...|...-..|+.+.++..|.+++.+.....                 ......+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3556667778888999999999999998864320                 12345567788888999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +++.++|.   +-.+|..+-.+|..+|++.+|+..|+++.+.
T Consensus        87 ~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999   9999999999999999999999999998655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11906 transcriptional regulator; Provisional

Probab=97.49  E-value=0.00064  Score=75.27  Aligned_cols=88  Identities=8%  Similarity=-0.184  Sum_probs=83.9

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      ..+-.+|.+.-.+|++++|.+     +.++...|.++...++++.|+..+++|+.++|+   ...+||.+|.++...|+.
T Consensus       317 ~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~  388 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKI  388 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCH
Confidence            445678999999999999999     999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 047433          516 RESLMDCIMFINGCIR  531 (614)
Q Consensus       516 eEAL~df~kALkl~P~  531 (614)
                      ++|+..++++++++|.
T Consensus       389 ~~a~~~i~~alrLsP~  404 (458)
T PRK11906        389 EEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHhccCch
Confidence            9999999999999984

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.47  E-value=0.0013  Score=78.32  Aligned_cols=133  Identities=9%  Similarity=-0.115  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN-----  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~-----  496 (614)
                      ....+-...+.+...+++++|+...+.+++..|+.     ..+|+-.|..+++.+++.+|...  .++.+-+..+     
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~-----i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS-----ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-----eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            45578888888889999999999999999999999     99999999999999988887766  6666666511     


Q ss_pred             -----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433          497 -----------SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK  565 (614)
Q Consensus       497 -----------~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k  565 (614)
                                 .+-.|++.+|.||..+|+.++|...|+++++++|+  ++.+-+.+.++....  .--.+...+.+|+..
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--NPEIVKKLATSYEEE--DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence                       02279999999999999999999999999999985  444444555444333  223334445555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.46  E-value=0.002  Score=63.84  Aligned_cols=74  Identities=15%  Similarity=-0.012  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      +..++..|..++..|+|.+|+..++.++...|.++.-.++.+.+|.+++..|++++|+..|+++++..|+++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~   78 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA   78 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            67889999999999999999999999999999988888999999999999999999999999999999987763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0058  Score=63.30  Aligned_cols=98  Identities=13%  Similarity=-0.080  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+|.+--..-..|+-.+||....+-++..+.+     .++|.-+|..|+.+|+|++|.-.+.+.+-++|.   ++--+-|
T Consensus       122 ~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---n~l~f~r  193 (289)
T KOG3060|consen  122 IRKRKLAILKAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---NPLYFQR  193 (289)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---cHHHHHH
Confidence            34444444555677779999999999999999     999999999999999999999999999999999   8888888


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHcCC
Q 047433          505 RSQAYDMKG---LGRESLMDCIMFINGCI  530 (614)
Q Consensus       505 RA~Al~~LG---~yeEAL~df~kALkl~P  530 (614)
                      +|.+++-+|   +++-|.+.|.++++++|
T Consensus       194 lae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  194 LAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            899988876   56778999999999987

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0034  Score=65.03  Aligned_cols=133  Identities=14%  Similarity=-0.034  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      ..+-.|-.+-..|+|++|++.|+..|+-+|.+     ...|-.+-.+...+|+.-+||+....-++.-+.   ...||+.
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---D~EAW~e  159 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---DQEAWHE  159 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---cHHHHHH
Confidence            45556667777899999999999999999999     888888888888899999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh-cchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR-VKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k-~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      ++..|...|+|+.|.-++++++=+.|.++--..+ ..+. |......+...++..|..++...
T Consensus       160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~-Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL-YTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999853321111 1233 22233444455566777776554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.44  E-value=0.0024  Score=75.57  Aligned_cols=101  Identities=14%  Similarity=0.002  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ....|..+|-.+.+.+++..||..++-|+..+|.+     ..+|.-++.+|...|+|..|++.+++|..++|.   +.-+
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---s~y~  632 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---SKYG  632 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchh-----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---hHHH
Confidence            34457779999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      -|..|.....+|+|++|+..+.+.+....
T Consensus       633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  633 RFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.39  E-value=0.00086  Score=61.97  Aligned_cols=71  Identities=18%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      .+.+++|-++-.+|+.++|+..|++|+...........++..+|.++..+|++++|+..+++++...|+..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            46889999999999999999999999998665333578999999999999999999999999999988533

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.38  E-value=0.0077  Score=68.98  Aligned_cols=159  Identities=17%  Similarity=0.029  Sum_probs=105.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 047433          431 KHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYD  510 (614)
Q Consensus       431 N~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~  510 (614)
                      ...|...+|+.|-..+.+|-...|+.      .+|..-+...--+++.++|+..+.++|+.-|+   +.|.|..+|+++.
T Consensus       626 Kle~en~e~eraR~llakar~~sgTe------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSISGTE------RVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLMLGQIEE  696 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhccCCcc------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHHhHHHH
Confidence            33456666777777777777766653      55666666666789999999999999999999   9999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHH---HHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhh
Q 047433          511 MKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH---MNALWVFGGARSKILSSPVNNVQESYGENKSGIEE  587 (614)
Q Consensus       511 ~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kq---mea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~e  587 (614)
                      .+++.+.|...|..-++.+|.+..-      =....++-.++   ..+.-.+.++..+.+....-.-..-.-+--.|+.+
T Consensus       697 ~~~~ie~aR~aY~~G~k~cP~~ipL------WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTKKCPNSIPL------WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHHHHHHHHHHHhccccCCCCchH------HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            9999999999999999999954321      11112222222   23344455555444333221111112233467777


Q ss_pred             hHHHHHHHHHHhccccc
Q 047433          588 QRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       588 Q~~dD~iral~~~~~~~  604 (614)
                      |+-.-|-++|++=|+.-
T Consensus       771 ~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  771 QAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHHHHHHHHhCCccc
Confidence            88888888888877653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.36  E-value=0.0015  Score=61.87  Aligned_cols=101  Identities=19%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc-chHH
Q 047433          465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV-KIPY  543 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~-kl~~  543 (614)
                      +--.|.+...-|+.+.|+.-+.++|.+-|.   +..+|.+|++++.-.|+.++|+.|+.+++++.-+..-..-+. .-..
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            334456667889999999999999999999   999999999999999999999999999999964221111011 1122


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          544 YAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       544 y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      ...|+.+..-.+...|..|....++
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCH
Confidence            3344555556677788887766543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.34  E-value=0.0018  Score=70.73  Aligned_cols=138  Identities=17%  Similarity=0.172  Sum_probs=98.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhH
Q 047433          384 KNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERM  462 (614)
Q Consensus       384 ~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a  462 (614)
                      .+.++..++....++..|.-+--       +.+..+...-..+-+.||.+|-.|+|+.||..-..-|.+..... +-..-
T Consensus       163 f~~ev~~al~~Av~fy~eNL~l~-------~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR  235 (639)
T KOG1130|consen  163 FNAEVTSALENAVKFYMENLELS-------EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER  235 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            46677777877777662221111       12223444566788899999999999999999998888865431 12234


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCL----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      .+++|+|.||+-+|+++.|++.|+.++.|    ... ......-|-+|.+|.-+.+++.|+.++++-|.+.
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999987654    222 0134566788888888888888888888877663

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.33  E-value=0.0079  Score=57.35  Aligned_cols=123  Identities=13%  Similarity=-0.027  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      +..+++.|...++.|+|.+|+..++....-.|..+....+.+.++-+|+..|++++|+..++++++++|.+++.+    .
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd----Y   85 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD----Y   85 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc----H
Confidence            677889999999999999999999999999998777789999999999999999999999999999999877643    2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          542 PYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       542 ~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ..|...+..- .+....|....              ....+.....+++.++.+.+..=|+.
T Consensus        86 a~Y~~gL~~~-~~~~~~~~~~~--------------~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   86 AYYMRGLSYY-EQDEGSLQSFF--------------RSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHH-HHhhhHHhhhc--------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            2232222221 11122222222              11122445557888888887777764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.31  E-value=0.00043  Score=58.49  Aligned_cols=59  Identities=27%  Similarity=0.264  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      ..+...|..+|+.|+|++|+..+++ ++.+|.+     ...+.-.|.|++++|+|++|+..+.+|
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            3567799999999999999999999 8888876     778888899999999999999998875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.28  E-value=0.014  Score=58.40  Aligned_cols=103  Identities=17%  Similarity=0.042  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGV-CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel-~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .......||++...|+|.+|...|.+++.- -..+     +.....+|++.+.++++.+|..-.+...+-+|. ...+..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~  162 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDG  162 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCc
Confidence            345667899999999999999999999973 3455     778889999999999999999999999999986 234567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..-.|.+|..+|++.+|...|+.++...|+
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            777889999999999999999999999883

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0028  Score=69.30  Aligned_cols=106  Identities=12%  Similarity=-0.042  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ...+..|.--|..+|..++|..|+..-.++|..+|.+     ..+|.-.|..++.+|+.++|+-.|+.|+.|.|.   ..
T Consensus       297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL  368 (564)
T KOG1174|consen  297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---RL  368 (564)
T ss_pred             hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----chHHHhccHHHHhccchHHHHHHHHHHHhcchh---hH
Confidence            3466788889999999999999999999999999999     999999999999999999999999999999999   89


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..|-.+-.+|...|++.||...-+.+++..|++.
T Consensus       369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence            9999999999999999999999999998888654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.25  E-value=0.0052  Score=63.06  Aligned_cols=75  Identities=12%  Similarity=-0.206  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      +..++..|.-+++.|+|++|+..+++++...|..+.-..+.+.+|.+|+.++++++|+..|+++++..|++++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            677888999999999999999999999999999555567789999999999999999999999999999876643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.20  E-value=0.00072  Score=47.60  Aligned_cols=33  Identities=15%  Similarity=-0.014  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +++|+++|.++..+|++++|+.+|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            478999999999999999999999999999884

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.18  E-value=0.024  Score=64.48  Aligned_cols=76  Identities=11%  Similarity=-0.080  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433          460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV  539 (614)
Q Consensus       460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~  539 (614)
                      ....+++.+|+.|..+|++++|+...++||+..|+   .++.|+.+|.+|...|++++|...++.+-++++.  |.-.+.
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNs  266 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINS  266 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHH
Confidence            45567889999999999999999999999999999   9999999999999999999999999999999763  444344


Q ss_pred             c
Q 047433          540 K  540 (614)
Q Consensus       540 k  540 (614)
                      +
T Consensus       267 K  267 (517)
T PF12569_consen  267 K  267 (517)
T ss_pred             H
Confidence            3

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.15  E-value=0.00045  Score=49.86  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433          485 ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM  520 (614)
Q Consensus       485 ~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~  520 (614)
                      |++||+++|+   ++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhcC
Confidence            7899999999   99999999999999999999863

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.12  E-value=0.0005  Score=49.62  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH
Q 047433          445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS  483 (614)
Q Consensus       445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~  483 (614)
                      .|++||+++|++     +.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n-----~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN-----AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC-----HHHHHHHHHHHHHCcCHHhhcC
Confidence            389999999999     9999999999999999999973

>PRK10941 hypothetical protein; Provisional

Probab=97.12  E-value=0.0031  Score=65.99  Aligned_cols=81  Identities=11%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          453 CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       453 ~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .|.+.+..+.....|+=.+|++.++++.|+...++.+.++|+   .+.-+.-||.+|.++|.+..|+.|++.+++.+|+.
T Consensus       172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            344445677788999999999999999999999999999999   88778889999999999999999999999999976


Q ss_pred             CChH
Q 047433          533 ETTS  536 (614)
Q Consensus       533 ~D~~  536 (614)
                      ++.+
T Consensus       249 p~a~  252 (269)
T PRK10941        249 PISE  252 (269)
T ss_pred             hhHH
Confidence            6544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.11  E-value=0.01  Score=61.67  Aligned_cols=109  Identities=16%  Similarity=0.130  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCC---C
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLL-REPDAAISDATRALCLSNPP---N  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkL-GdyeeAI~D~~~ALeLdP~~---~  496 (614)
                      .+..+.+ +-..++.+++++|+..|++|+++.-.. .....+.++.+.|.+|... |++++|+..|.+|+++-...   .
T Consensus        74 Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~  152 (282)
T PF14938_consen   74 AAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH  152 (282)
T ss_dssp             HHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence            3445554 444556669999999999999975322 2344578999999999998 99999999999999873221   1


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ...+.+.+.|.++..+|+|++|+..|+++.+..-+
T Consensus       153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            13567788999999999999999999999987543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.10  E-value=0.0064  Score=64.05  Aligned_cols=87  Identities=17%  Similarity=0.008  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR  516 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye  516 (614)
                      .++.+|.-.|++..+..|..     +.+++..|.|++.+|+|++|.+.+.+|+..+|+   ++.++.++..+...+|+..
T Consensus       181 e~~~~A~y~f~El~~~~~~t-----~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGST-----PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--S-----HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TC
T ss_pred             hhHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCCh
Confidence            46999999999988877777     889999999999999999999999999999999   9999999999999999994


Q ss_pred             H-HHHHHHHHHHcCCC
Q 047433          517 E-SLMDCIMFINGCIR  531 (614)
Q Consensus       517 E-AL~df~kALkl~P~  531 (614)
                      + +-+.+.+.....|+
T Consensus       253 ~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  253 EAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HHHHHHHHHCHHHTTT
T ss_pred             hHHHHHHHHHHHhCCC
Confidence            4 44566666667663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.07  E-value=0.0032  Score=71.74  Aligned_cols=96  Identities=14%  Similarity=0.028  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      |-..|-..-..++|.+||.+|+.|+.+.|++     ..++.-+|....++++|+.....=.+-++++|.   +...|...
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w~~~  149 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-----LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASWIGF  149 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHHHHH
Confidence            5667777778889999999999999999999     999999999999999999999999999999999   88899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      +.++..+|++..|+...+...+..
T Consensus       150 Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  150 AVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998888876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.03  E-value=0.0011  Score=46.11  Aligned_cols=31  Identities=23%  Similarity=0.120  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          464 LYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ++.++|.+|+++|+|++|+..++++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.99  E-value=0.0016  Score=45.37  Aligned_cols=33  Identities=15%  Similarity=-0.009  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +++++.+|.++..+|++++|+..|+++++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.97  E-value=0.0013  Score=49.49  Aligned_cols=42  Identities=24%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ  507 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~  507 (614)
                      .++..+|.+|..+|++++|+..++++++.+|+   +..++..+|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence            46788899999999999999999999999999   8888888775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.93  E-value=0.0032  Score=67.21  Aligned_cols=110  Identities=13%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433          413 EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS  492 (614)
Q Consensus       413 ~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd  492 (614)
                      .+.+...+..+.-+...+..+-..+++++|++.|..+++..|.+     .++..-.|.-|+--++++-|+..|++.|.+.
T Consensus       280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY~~~PE~AlryYRRiLqmG  354 (478)
T KOG1129|consen  280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFYDNNPEMALRYYRRILQMG  354 (478)
T ss_pred             hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence            34444444555566677777777788888888888888888888     7777777778888888888888888888888


Q ss_pred             CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       493 P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      -.   ++..|.+.|.|.+.-++++-++..|++++...-
T Consensus       355 ~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  355 AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence            88   888888888888888888888888888887754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.079  Score=60.34  Aligned_cols=135  Identities=14%  Similarity=0.083  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------------
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS--------------  492 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd--------------  492 (614)
                      .+++-.+|+.+..++|+..|+   .+++.+     .-+..-+|++++++|+|++|+..|...++-+              
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            467777788888888888887   334444     4566778888888888888888777764432              


Q ss_pred             -------------CCCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCC-hHh-------hcchHHHH
Q 047433          493 -------------NPPN-SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC-----IRSET-TSK-------RVKIPYYA  545 (614)
Q Consensus       493 -------------P~~~-~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~-----P~~~D-~~~-------k~kl~~y~  545 (614)
                                   |..+ .....+|+.|.++...|+|.+|++.++++++++     .++.. -+.       +..+. |+
T Consensus       155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-yV  233 (652)
T KOG2376|consen  155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-YV  233 (652)
T ss_pred             HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HH
Confidence                         2211 156789999999999999999999999995432     11111 111       22333 77


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          546 ARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       546 ~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      .++.++.-++...|...+.......
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHhcCCCc
Confidence            8888888888888888887764433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.85  E-value=0.028  Score=49.99  Aligned_cols=98  Identities=20%  Similarity=0.067  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .....+......++++.|+..+.+++...+. .     ...+.+++.++...+++..|+..+..++...|.   ....++
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~  240 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALY  240 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-----hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHh
Confidence            3444444466777777777777777777776 5     677777777777777777777777777777777   666777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..+..+...+.++++...+.++++..|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         241 NLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            777777766667777777777777766

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.83  E-value=0.015  Score=67.54  Aligned_cols=133  Identities=17%  Similarity=0.001  Sum_probs=105.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      ...+....+.++-++|-.+..+|-.++|..     +..|+-+|.++...|.+.+|.+.|..|+.+||+   ++.+.--+|
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-----~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Ala  725 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKIDPLS-----ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTALA  725 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcchhh-----HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence            344455555666788888999999999998     999999999999999999999999999999999   999999999


Q ss_pred             HHHHHcCCHHHHHH--HHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          507 QAYDMKGLGRESLM--DCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       507 ~Al~~LG~yeEAL~--df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      .++.+.|+-.-|..  .+..+++++|.+.  ++-..+. .+.+..+.--++...|..++....+.|
T Consensus       726 ~~lle~G~~~la~~~~~L~dalr~dp~n~--eaW~~LG-~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  726 ELLLELGSPRLAEKRSLLSDALRLDPLNH--EAWYYLG-EVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHhhCCCCH--HHHHHHH-HHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99999999988888  9999999988533  3333333 233333334566777777777765544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.78  E-value=0.053  Score=62.42  Aligned_cols=103  Identities=16%  Similarity=0.011  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      --+-|...|..+-+.++.+.|-+.|+..++.||..     ..+|.-++..--+.|..-.|-..++++.--||.   +...
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-----ipLWllLakleEk~~~~~rAR~ildrarlkNPk---~~~l  755 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-----IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK---NALL  755 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-----chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC---cchh
Confidence            44457788888888889999999999999999988     888888888888888899999999999999998   8888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      |.-.-+.-...|+.++|.....+||+-+|++
T Consensus       756 wle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  756 WLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            8888888888899999999999999888875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.76  E-value=0.075  Score=47.19  Aligned_cols=107  Identities=20%  Similarity=0.043  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ-CHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~-~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      ......+...|......+++..|+..+.+++...+..     ......... ++...|+++.|+..+.+++.++|.....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  166 (291)
T COG0457          92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-----DLAEALLALGALYELGDYEEALELYEKALELDPELNEL  166 (291)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence            3455667788888888899999999999999987765     444555555 8999999999999999998877610116


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ...++.++..+...+++++|+..+.++++..+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            777788888888899999999999999999774

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.72  E-value=0.032  Score=57.83  Aligned_cols=75  Identities=13%  Similarity=-0.088  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      +.-++|-|+..++-|+|++|+..++.+....|..+...++..-++.++++-++|++|+...++++++.|++++.+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            678899999999999999999999999999999888899999999999999999999999999999999988765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.70  E-value=0.014  Score=60.74  Aligned_cols=101  Identities=8%  Similarity=-0.055  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhcchHH
Q 047433          465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRVKIPY  543 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~kl~~  543 (614)
                      .+|-|.-+++.|+|..|..-|..=++..|+...-..|+|-+|++++.+|+|++|...|..+++-.|+++. |+.-.|+..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888999999999999999999999999996667789999999999999999999999999999998876 465567664


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcC
Q 047433          544 YAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       544 y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      +..++ ++.-.+...++.++++-
T Consensus       224 ~~~~l-~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         224 SLGRL-GNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHh-cCHHHHHHHHHHHHHHC
Confidence            44443 33345556667776654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.65  E-value=0.015  Score=63.87  Aligned_cols=126  Identities=16%  Similarity=0.226  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------C-cch----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--------P-KNE----RMVLYSNRAQCHLLLREPDAAISDATRALCL  491 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--------~-~~~----~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL  491 (614)
                      .....|...|++++|..|+..|..||++|..-        . .++    -.-+-..+..||+++++.+-|+....+.|-+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            34456778888899999999999999887652        1 112    2334568899999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCChHhhcchHHHHHHHHHHHHH
Q 047433          492 SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING---CIRSETTSKRVKIPYYAARMISKHMN  554 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl---~P~~~D~~~k~kl~~y~~r~i~Kqme  554 (614)
                      +|.   +..-+.|+|.++..|.+|.+|-..+--+.=+   +-+ .++....-|+.|...|+.....
T Consensus       258 nP~---~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~-~~q~~S~lIklyWqamiEeAiT  319 (569)
T PF15015_consen  258 NPS---YFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG-SEQRISKLIKLYWQAMIEEAIT  319 (569)
T ss_pred             Ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHhHHHHHHHHHHHHHHHHHh
Confidence            999   9999999999999999999998876555432   221 1222233455565556654443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.036  Score=58.50  Aligned_cols=86  Identities=13%  Similarity=0.023  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHc---CC
Q 047433          438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMK---GL  514 (614)
Q Consensus       438 dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~L---G~  514 (614)
                      ..+.-+...+..|..+|++     +.-|.-+|.+|+.+|++..|...|.+|++|.|+   +...+.-.|.+++..   ..
T Consensus       137 ~~~~l~a~Le~~L~~nP~d-----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~  208 (287)
T COG4235         137 EMEALIARLETHLQQNPGD-----AEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQM  208 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcc
Confidence            3566777888889999999     999999999999999999999999999999999   999999999998876   35


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 047433          515 GRESLMDCIMFINGCIR  531 (614)
Q Consensus       515 yeEAL~df~kALkl~P~  531 (614)
                      ..++...|+++++++|.
T Consensus       209 ta~a~~ll~~al~~D~~  225 (287)
T COG4235         209 TAKARALLRQALALDPA  225 (287)
T ss_pred             cHHHHHHHHHHHhcCCc
Confidence            67888999999999884

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.59  E-value=0.00096  Score=71.30  Aligned_cols=86  Identities=22%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHH
Q 047433          475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMN  554 (614)
Q Consensus       475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqme  554 (614)
                      .|.++.||..|+.||+++|.   ....|-.|+.++.++++...|+.||..+++++|+   ....-++..++.|+++.--+
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---sa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---SAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             CcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc---cccccchhhHHHHHhhchHH
Confidence            47799999999999999999   9999999999999999999999999999999984   33356888899999999888


Q ss_pred             HHHHHhhhhhcC
Q 047433          555 ALWVFGGARSKI  566 (614)
Q Consensus       555 a~~lF~~Ai~k~  566 (614)
                      ++.+++.+...+
T Consensus       201 aa~dl~~a~kld  212 (377)
T KOG1308|consen  201 AAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHhcc
Confidence            888888887665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.57  E-value=0.0078  Score=61.34  Aligned_cols=84  Identities=13%  Similarity=-0.069  Sum_probs=75.7

Q ss_pred             CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      .+++++.++..||..|-.+|-+.-|--|++++|.+.|+   -+.++.-+|.-+...|+|+.|.+.|...++++|.++-+.
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence            35778999999999999999999999999999999999   999999999999999999999999999999999877655


Q ss_pred             hhcchHH
Q 047433          537 KRVKIPY  543 (614)
Q Consensus       537 ~k~kl~~  543 (614)
                      -+..+..
T Consensus       137 lNRgi~~  143 (297)
T COG4785         137 LNRGIAL  143 (297)
T ss_pred             hccceee
Confidence            5555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.43  E-value=0.036  Score=63.53  Aligned_cols=104  Identities=15%  Similarity=-0.091  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      +..+.+-.+|-.+...|+-++|...-..++..++..     .++|.-.|..+..-++|++||+.|+.|+.++|+   |..
T Consensus        39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d---N~q  110 (700)
T KOG1156|consen   39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-----HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD---NLQ  110 (700)
T ss_pred             ccchhHHhccchhhcccchHHHHHHHHHHhccCccc-----chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---cHH
Confidence            355678889999999999999999999999999999     999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .|.-++....++|+++-....=.+.+++.|..
T Consensus       111 ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen  111 ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999998853

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.38  E-value=0.015  Score=66.10  Aligned_cols=65  Identities=15%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ..+...|-.+...|++++|...|++|++++| +     ..+|..+|.++...|++++|+..+.+|+.++|.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s-----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-S-----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3455667777889999999999999999999 5     789999999999999999999999999999999

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.034  Score=63.16  Aligned_cols=101  Identities=17%  Similarity=0.055  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ....++-.--.+.+.++|++|+    +.|+..+..  ......++-+|-|++++++.++|+.+++   .+++.   ..+.
T Consensus        45 d~~a~~cKvValIq~~ky~~AL----k~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~---~~~l  112 (652)
T KOG2376|consen   45 DEDAIRCKVVALIQLDKYEDAL----KLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRL---DDKL  112 (652)
T ss_pred             cHhhHhhhHhhhhhhhHHHHHH----HHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh---ccccc---chHH
Confidence            4455666666667777777776    234444421  1113444789999999999999999999   56666   6788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      +.-+|+.++.+|+|++|+..|+..++...+..|
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            999999999999999999999999888654333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.32  E-value=0.012  Score=58.29  Aligned_cols=52  Identities=21%  Similarity=0.105  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCC
Q 047433          438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-----------PDAAISDATRALCLSNP  494 (614)
Q Consensus       438 dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-----------yeeAI~D~~~ALeLdP~  494 (614)
                      -+++||..|++||.++|+.     ..++.|.|.+|..++.           |++|...+.+|...+|+
T Consensus        50 miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4688999999999999999     9999999999998754           88899999999999998

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.02  E-value=0.16  Score=55.25  Aligned_cols=218  Identities=15%  Similarity=0.138  Sum_probs=134.6

Q ss_pred             hhhcccchhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHH
Q 047433          289 LCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAI  368 (614)
Q Consensus       289 ~~~~~~~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~i  368 (614)
                      |=+++-|-+|+....++++.|-|.-     =-..++||+.+..-|......++-.++..+.=..+..   +.     +  
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~---ds-----~--   80 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE---DS-----D--   80 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH---HH-----H--
Confidence            3457778889999999888887766     3467788888766654444334333443322211111   10     0  


Q ss_pred             HHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433          369 TRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTE  448 (614)
Q Consensus       369 t~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~Ytk  448 (614)
                        -+.+.|      -+-+..++.+.++.+..  ...+.. +.++.....+  .--...-..|+++...+.|+.+++.|+.
T Consensus        81 --~~~ea~------lnlar~~e~l~~f~kt~--~y~k~~-l~lpgt~~~~--~~gq~~l~~~~Ahlgls~fq~~Lesfe~  147 (518)
T KOG1941|consen   81 --FLLEAY------LNLARSNEKLCEFHKTI--SYCKTC-LGLPGTRAGQ--LGGQVSLSMGNAHLGLSVFQKALESFEK  147 (518)
T ss_pred             --HHHHHH------HHHHHHHHHHHHhhhHH--HHHHHH-hcCCCCCccc--ccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence              000111      11122222333322211  111111 0121111100  0112455589999999999999999999


Q ss_pred             HHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc----cHHHHHHHHHHHHHcCCHHHHHH
Q 047433          449 ALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS----HCKSLWRRSQAYDMKGLGRESLM  520 (614)
Q Consensus       449 AIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~----~~KAyyRRA~Al~~LG~yeEAL~  520 (614)
                      |+++.... ..-+....+.-++..|-.+.||++|+-...+|.++-...   .+    +.-++|+++.++..+|+.-+|.+
T Consensus       148 A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e  227 (518)
T KOG1941|consen  148 ALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME  227 (518)
T ss_pred             HHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            99986543 223345678888999999999999999999999886541   11    23588999999999999999999


Q ss_pred             HHHHHHHcCCCCCC
Q 047433          521 DCIMFINGCIRSET  534 (614)
Q Consensus       521 df~kALkl~P~~~D  534 (614)
                      .++++.++.-.+.|
T Consensus       228 ~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  228 CCEEAMKLALQHGD  241 (518)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999988655555

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.00  E-value=0.016  Score=43.55  Aligned_cols=41  Identities=24%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ  470 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~  470 (614)
                      .+...|..+...|++++|+..|+++|+.+|++     ..++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-----~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-----PEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-----HHHHHHhhh
Confidence            56788999999999999999999999999999     888888765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.99  E-value=0.012  Score=41.16  Aligned_cols=31  Identities=13%  Similarity=0.041  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ++|+.+|.+|..+|++++|+..|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566666666666666666666666666655

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.98  E-value=0.0095  Score=41.64  Aligned_cols=32  Identities=22%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+|.++|.+|.++|++++|+..++++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56888899999999999999999999988885

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.96  E-value=0.14  Score=61.34  Aligned_cols=104  Identities=14%  Similarity=-0.061  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .++.....+..+....++++|......+-+..|..   .....|..||..|++-++...||.+++.|++.+|.   .+.+
T Consensus       525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~---~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~  598 (1238)
T KOG1127|consen  525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF---ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNL  598 (1238)
T ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH---HHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHH
Confidence            34456666667777778888887766665555542   33445666999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      |.-+|.+|...|.|.-|++.|.++..++|.
T Consensus       599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  599 WLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            999999999999999999999999999984

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.95  E-value=1.4  Score=54.48  Aligned_cols=95  Identities=8%  Similarity=-0.143  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCccHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNPPNSHCK  500 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~~~~~~K  500 (614)
                      .+....+.+.+.|++++|+..|.+..+.  .|+      ...|+.+..+|.+.|++++|+..+++..+.  .|+    ..
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd----~~  755 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN----TI  755 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----HH
Confidence            4566666777777777777777766543  343      466777777777777777777777766543  343    56


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      .|.-+-.++...|++++|...+.+.++..
T Consensus       756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        756 TYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            66666677777777777777777777654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.85  E-value=0.93  Score=52.93  Aligned_cols=93  Identities=9%  Similarity=-0.012  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      +....+.+.+.|++++|...|.+..+  | +     ...|+.+..+|.+.|+.++|+..+++.++....  ++...|.-.
T Consensus       363 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d-----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--Pd~~T~~~l  432 (697)
T PLN03081        363 NTALVDLYSKWGRMEDARNVFDRMPR--K-N-----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--PNHVTFLAV  432 (697)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHhCCC--C-C-----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH
Confidence            44555667777777777777776543  3 2     456777777777777777777777776653211  135667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Q 047433          506 SQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl  528 (614)
                      -.++...|..++|...|+...+.
T Consensus       433 l~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        433 LSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHh
Confidence            77777777777777777777654

>PRK15331 chaperone protein SicA; Provisional

Probab=95.82  E-value=0.071  Score=52.11  Aligned_cols=97  Identities=8%  Similarity=-0.208  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      ....+-.|--++..|++++|...|+-...+||.   +.+-++.+|.++..+++|++|+..|-.+..+.++++-|-.....
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            677777889999999999999999999999999   99999999999999999999999999999998866555433221


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Q 047433          542 PYYAARMISKHMNALWVFGGARS  564 (614)
Q Consensus       542 ~~y~~r~i~Kqmea~~lF~~Ai~  564 (614)
                      -   ..++++...+...|..++.
T Consensus       114 C---~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        114 C---QLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             H---HHHhCCHHHHHHHHHHHHh
Confidence            1   2245666777778888876

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.81  E-value=0.015  Score=39.97  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .|+|++|.++..+|++++|+..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            36788888888888888888888888888875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.80  E-value=0.017  Score=63.41  Aligned_cols=105  Identities=19%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC---CCCccH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSN---PPNSHC  499 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP---~~~~~~  499 (614)
                      .-++-.+|..+++.|++...+..|..||+.-..+ -..+..+|+.++.+|+-+++|++|++.-+.-|.+..   +.....
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence            4467789999999999999999999999987654 455678899999999999999999986555443321   111256


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      |+--++|..+..+|.|++|+.++.+-|.+
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~  124 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDF  124 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHH
Confidence            77888999999999999999998887755

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.17  Score=52.60  Aligned_cols=99  Identities=22%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHH
Q 047433          385 NKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVL  464 (614)
Q Consensus       385 n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~l  464 (614)
                      ....++++..+..+.    -+|+  +-+++=++.......-+.+-..-+...|+|-++++.-++.|...|.+     ..+
T Consensus       198 ~~~YreAi~~l~~L~----lkEk--P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n-----vKA  266 (329)
T KOG0545|consen  198 SSKYREAIICLRNLQ----LKEK--PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN-----VKA  266 (329)
T ss_pred             HHHHHHHHHHHHHHH----hccC--CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch-----HHH
Confidence            445566676666665    4555  34444343333344456777888899999999999999999999999     999


Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          465 YSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      |+.||.++...-+..+|-.|+..+|+++|.
T Consensus       267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  267 YFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            999999999999999999999999999998

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.77  E-value=1.2  Score=55.07  Aligned_cols=133  Identities=10%  Similarity=-0.080  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCccHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVC-PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNPPNSHCKS  501 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~-P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~~~~~~KA  501 (614)
                      .+......+.+.|++++|.+.+.+.++.. +.+     ...|+.+..+|.+.|++++|+..++...+.  .|+    ...
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-----~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvt  721 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-----TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT----VST  721 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHH
Confidence            56677778888999999999999888753 223     678899999999999999999999887653  444    778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      |..+..+|...|++++|++.|++..+..-. +|...-..+- ......++...+...|..+......
T Consensus       722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi~  786 (1060)
T PLN03218        722 MNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILL-VASERKDDADVGLDLLSQAKEDGIK  786 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            888999999999999999999987764321 1221111111 1111223334556677777655533

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.032  Score=59.81  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcC
Q 047433          436 LGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG  513 (614)
                      .|++..=+...+ +|..+|. ..+++.+.-|---|.=|++-++|..|+..|+..|+-.-.+ ..+.-.|.+||.|.+.+|
T Consensus        55 ~gd~~~~~~~Lq-slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~  133 (390)
T KOG0551|consen   55 EGDPNPDNVCLQ-SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG  133 (390)
T ss_pred             CCCCCccHHHHH-HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH
Confidence            344433333333 4555543 2355678888888999999999999999999999875443 357889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCC
Q 047433          514 LGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P~~~D  534 (614)
                      +|..|+.|+.+++++.|.+-.
T Consensus       134 NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen  134 NYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHHHHHHHHHhcCcchhh
Confidence            999999999999999996543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.71  E-value=0.14  Score=56.50  Aligned_cols=86  Identities=16%  Similarity=-0.056  Sum_probs=77.6

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .++++.|+..+.+..+.+|..        ..-+|.+++..++..+|++...++|+.+|.   +...+.-.+..+...+++
T Consensus       182 t~~~~~ai~lle~L~~~~pev--------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPEV--------AVLLARVYLLMNEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCcH--------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCH
Confidence            467999999999999988753        334788999999999999999999999999   899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 047433          516 RESLMDCIMFINGCIRS  532 (614)
Q Consensus       516 eEAL~df~kALkl~P~~  532 (614)
                      +.|+...++++++.|..
T Consensus       251 ~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSE  267 (395)
T ss_pred             HHHHHHHHHHHHhCchh
Confidence            99999999999999953

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.67  E-value=0.83  Score=53.35  Aligned_cols=94  Identities=7%  Similarity=-0.129  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ..|......+.+.|+.++|++.|.+.++.  .|+      ...|...-.++.+.|+.++|...++...+-.+- .++...
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~  464 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN------HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMH  464 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccc
Confidence            36777788888888888888888887763  454      466777778888888888888888887653211 113567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~k  524 (614)
                      |.-+..+|...|++++|.+.+++
T Consensus       465 y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        465 YACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             hHhHHHHHHhcCCHHHHHHHHHH
Confidence            77788888888888888877654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.091  Score=56.97  Aligned_cols=53  Identities=32%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      .|--+|..|+|++|+..|+-+.+.+.-.     +.++.|+|-|++-+|.|.+|.+...
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHHHHHHHHHHHHHHh
Confidence            3677899999999999999888765444     6777788888777777666655433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.54  E-value=0.018  Score=59.30  Aligned_cols=64  Identities=14%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +---+.+++.-++|..||+.|.+||.++|.   .+.-|-+|+.+|+++.+++....|+++++++.|+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence            334456677788999999999999999999   7777889999999999999999999999999884

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.54  E-value=0.12  Score=57.98  Aligned_cols=104  Identities=18%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      -+--+..+|.-+...|+.++|++.|++++..... .++....++..++.|++-+.+|++|...+.+.++.+.    +.++
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~----WSka  340 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK----WSKA  340 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----cHHH
Confidence            3446788999999999999999999999964443 3666788999999999999999999999999998654    3555


Q ss_pred             HH--HHHHHHHHcCCH-------HHHHHHHHHHHHcCC
Q 047433          502 LW--RRSQAYDMKGLG-------RESLMDCIMFINGCI  530 (614)
Q Consensus       502 yy--RRA~Al~~LG~y-------eEAL~df~kALkl~P  530 (614)
                      +|  -.|.|+.++|+.       ++|...|.++-.+..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            54  568899999999       888888888877754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.40  E-value=0.43  Score=46.84  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSL  502 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAy  502 (614)
                      ..+...|+.+.+.|++++|+..|+++.+.+..  .......+.+.-.+.+..++|..+.....+|-.+-... .+..+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            47889999999999999999999999998763  35567788899999999999999999999887654331 1223332


Q ss_pred             H--HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          503 W--RRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       503 y--RRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +  -.|.++...|+|.+|-..|..+...
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            2  3455666778999888887766544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.30  E-value=0.023  Score=36.47  Aligned_cols=31  Identities=26%  Similarity=0.177  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          464 LYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ++.++|.++..++++++|+..++++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555555666666666666666555555554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.26  E-value=0.14  Score=54.02  Aligned_cols=96  Identities=8%  Similarity=-0.139  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH--cC--CcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL--LR--EPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk--LG--dyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      -.-..+.+.++++.|...+...-+.+.+.       ...++|.+++.  .|  .+.+|...|+......|.   +++.+.
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~~~ln  205 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDS-------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TPKLLN  205 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCH-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CHHHHH
Confidence            34456778999999999999888776654       45566665554  44  699999999998777777   899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..|.++..+|+|++|...+.++++.+|+++
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            999999999999999999999999988543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.24  E-value=0.19  Score=59.84  Aligned_cols=105  Identities=17%  Similarity=0.000  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---ccHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---SHCKSL  502 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---~~~KAy  502 (614)
                      ....|..++..|++++|...+.++++..|.........+.+++|.++...|++++|...+.+++.+.....   ....++
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            34478888999999999999999999766542233456788999999999999999999999997644310   123577


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..+|.++...|++++|...+++++.+..
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~  562 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIE  562 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999998743

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=1.1  Score=51.80  Aligned_cols=101  Identities=17%  Similarity=0.058  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .+++.+...|+..+|..+++.|...+..-|.+ ....-+....|++.||+++.+.+.|...+..|=+.||.   ++---+
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q~  432 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQL  432 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHHH
Confidence            47899999999999999999999999988775 22334778899999999999999999999999999999   777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      ...++...-|.-++|+....+....
T Consensus       433 ~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  433 LMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhh
Confidence            7778888889999999988877654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.059  Score=57.31  Aligned_cols=96  Identities=15%  Similarity=0.008  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCC-
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----SNPPN-  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~-  496 (614)
                      .+....+.|-..|+.|+|++|+..|+.|++...-.     +.+-+|.|.|+++.|+|..|++.....++-    .|.-+ 
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-----pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-----PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-----chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            56678899999999999999999999999998877     888899999999999999999998887753    33210 


Q ss_pred             ---------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433          497 ---------------------SHCKSLWRRSQAYDMKGLGRESLMDC  522 (614)
Q Consensus       497 ---------------------~~~KAyyRRA~Al~~LG~yeEAL~df  522 (614)
                                           .-+.|+.-++.+++..|+++.|.+.+
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                                 12467777888999999999876643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.45  Score=50.57  Aligned_cols=106  Identities=20%  Similarity=0.149  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHH--------------------
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISD--------------------  484 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D--------------------  484 (614)
                      ....++......|++.+|...+..++...|.+     ..+..-+|.||+..|+.+.|-..                    
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34567788899999999999999999999998     88899999999999998664332                    


Q ss_pred             --------------HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh
Q 047433          485 --------------ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR  538 (614)
Q Consensus       485 --------------~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k  538 (614)
                                    ..+.+.-||+   +..+-+.+|..+...|+.++|+..+-..++.+-+..|...+
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R  275 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR  275 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence                          2233344788   89999999999999999999999999999987666665533

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.08  E-value=0.03  Score=62.34  Aligned_cols=68  Identities=18%  Similarity=-0.052  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +..+-|-|.-.++-++|+.|+..|++||+++|+   .+.-+-.|++++...++|..|+.|+.++++++|..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            445667788889999999999999999999999   88888899999999999999999999999998854

>PLN03077 Protein ECB2; Provisional

Probab=95.01  E-value=2.1  Score=51.33  Aligned_cols=97  Identities=8%  Similarity=-0.158  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ....|....+.+.+.|+.++|+..|++.++.  .|+.      ..|...-.++.+.|++++|...++...+..+- .++.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-~P~~  625 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-TPNL  625 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-CCch
Confidence            3447888889999999999999999988874  5664      45666667788999999999999998743221 1147


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      ..|..+..+|...|++++|.+.+++.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            89999999999999999999988774

>smart00028 TPR Tetratricopeptide repeats

Probab=94.79  E-value=0.05  Score=34.84  Aligned_cols=32  Identities=19%  Similarity=0.017  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .+++++|.++..+|++++|...|+++++..|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            57899999999999999999999999998773

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.79  E-value=0.27  Score=58.46  Aligned_cols=104  Identities=12%  Similarity=-0.086  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-----CccH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-----NSHC  499 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-----~~~~  499 (614)
                      ....|..+...|++++|...|.+++...... ........+.++|.+++..|++++|...+.+++.+-...     ....
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            3445555666666666666666666553321 111223455566666666666666666666666542110     0012


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      -.+..+|.++...|++++|...+++++...
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            234445666666666666666666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.088  Score=57.10  Aligned_cols=86  Identities=12%  Similarity=-0.087  Sum_probs=69.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      .+....||..||....-.+.++...    ....-.=.|.|++.+|+|++|+..|+-+..-+..   ..+...++|.+++.
T Consensus        31 dfls~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFY  103 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHH
Confidence            4556789999999998887654332    2344444689999999999999999999987666   78999999999999


Q ss_pred             cCCHHHHHHHHHH
Q 047433          512 KGLGRESLMDCIM  524 (614)
Q Consensus       512 LG~yeEAL~df~k  524 (614)
                      +|.|.||...-.+
T Consensus       104 Lg~Y~eA~~~~~k  116 (557)
T KOG3785|consen  104 LGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999865443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.29  E-value=0.56  Score=49.43  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ..-....|...++.||.+.|-..+++.-+.... +.-......+.|.+.+|+-.++|.+|...+++.+..||.   ++.+
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~---~~~a  288 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR---NAVA  288 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC---chhh
Confidence            334667888899999998888888743322111 011223677889999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      -.++|.|+..+|+..+|++..+.++...|...-.
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            9999999999999999999999999999975543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.23  E-value=0.16  Score=55.22  Aligned_cols=78  Identities=14%  Similarity=-0.022  Sum_probs=64.7

Q ss_pred             chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          459 NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN--SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       459 ~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~--~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      ....++|.|++..+.++.++.++++.++..+.+-....  .-..++.-+|.|+..++.++.+++.|+.|++..-...|+.
T Consensus        80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~  159 (518)
T KOG1941|consen   80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM  159 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence            34678999999999999999999999999998865421  1236677799999999999999999999999876655654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.20  E-value=0.064  Score=39.71  Aligned_cols=39  Identities=41%  Similarity=0.512  Sum_probs=31.8

Q ss_pred             HHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433          125 EFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLAS  164 (614)
Q Consensus       125 ~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~  164 (614)
                      +....-+++|+||+|+.||+ --.=.=|+.|+.||++|++
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence            44566789999999999999 4455558999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.13  E-value=0.072  Score=38.49  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          465 YSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      |.|+|.+|.++|+|++|+..|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.13  E-value=0.17  Score=54.02  Aligned_cols=101  Identities=18%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      +|......+....+.|+.+.|...|..|+.++|++     +.++...|+....-++.-+|-..|.+||.++|.   |.+|
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~-----p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~---nseA  186 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN-----PQILIEMGQFREMHNEIVEADQCYVKALTISPG---NSEA  186 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC---chHH
Confidence            44455566777889999999999999999999999     999999999988889999999999999999999   9999


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMK----GLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~L----G~yeEAL~df~kALkl~P  530 (614)
                      +.+|+...--.    .++-+++.+.+..+..-|
T Consensus       187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~  219 (472)
T KOG3824|consen  187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQ  219 (472)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99998754322    223344444444444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=0.36  Score=51.53  Aligned_cols=105  Identities=13%  Similarity=-0.058  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC---------  490 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe---------  490 (614)
                      ++.-..+...|--++...+|..|..+|++.-.+.|..     .....--|+.+++-+.|.+|+........         
T Consensus        41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-----~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l  115 (459)
T KOG4340|consen   41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-----EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL  115 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence            3344456677777888888888888888887777776     66777778888888888888777654332         


Q ss_pred             -c------CCCC-------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          491 -L------SNPP-------------NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       491 -L------dP~~-------------~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                       +      ..++             .-......+.|..+++-|+|++|++-|+.+++..
T Consensus       116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence             1      1000             0134556677777778888888888888888774

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.04  E-value=0.5  Score=47.61  Aligned_cols=100  Identities=16%  Similarity=0.033  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .....+...+..|++++|+.....++....+  ....+.+-.++|.+.+.+|.+++|+.-.+..-.-+=    ..-.--.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~el  164 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD--ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAEL  164 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHH
Confidence            4567788889999999999999999985443  356677888999999999999999987665432211    1223557


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ||-++..+|+-++|...|.++++..+
T Consensus       165 rGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         165 RGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             hhhHHHHcCchHHHHHHHHHHHHccC
Confidence            99999999999999999999999964

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.96  E-value=0.46  Score=43.91  Aligned_cols=62  Identities=19%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      ...+...+..+...|++++|+..+++++.++|.+     -.+|..+-.+|..+|++.+|+..|.+..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYD-----EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3466777888889999999999999999999999     8999999999999999999999888764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.92  E-value=1.1  Score=45.16  Aligned_cols=124  Identities=15%  Similarity=-0.044  Sum_probs=89.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHH
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC-LSNPPNSHCKSLWRRSQAYD  510 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-LdP~~~~~~KAyyRRA~Al~  510 (614)
                      ..-++=|.+.++..-++.++..|+.      .-...+|.+...+|++.+|...|.+++. +--.   ....+.-++++..
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTv------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqf  135 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTV------QNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQF  135 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhH------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHH
Confidence            3344456667777778888999974      5577889999999999999999999985 3344   5778899999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433          511 MKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK  565 (614)
Q Consensus       511 ~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k  565 (614)
                      .++++.+|...+++..+..|.-..|+-..-+. ....-.++--.+...|+-+++-
T Consensus       136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a-R~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA-RTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             hhccHHHHHHHHHHHhhcCCccCCCCchHHHH-HHHHhcCCchhHHHHHHHHHHh
Confidence            99999999999999999998765555222222 2222233333344455555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.83  E-value=0.35  Score=44.43  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=70.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCCCCc
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-----------PDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-----------yeeAI~D~~~ALeLdP~~~~  497 (614)
                      ++..+|..|++-.|++.....|...+.+  .....++.--|.++.++..           .-.++..+.++..+.|.   
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~--~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~---   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGED--ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD---   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCC--CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh---
Confidence            4678999999999999999999998875  1112667777777776542           44689999999999999   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .+..+|.+|.=+-....|++++.-.+++|..
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            7666666666655555666666666666654

>PLN03077 Protein ECB2; Provisional

Probab=93.83  E-value=5.4  Score=47.83  Aligned_cols=94  Identities=12%  Similarity=-0.019  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+.-....+.+.|++++|.+.+.+. .+.|+      ...|..+-.++..-|+.+.|....+++++++|+   +...|.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~~~y~  695 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD------PAVWGALLNACRIHRHVELGELAAQHIFELDPN---SVGYYI  695 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchHH
Confidence            45777788888999999999988763 44555      455666656667788889998899999999999   888899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      .++.+|...|++++|.+..+...+
T Consensus       696 ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        696 LLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999999999999887776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.73  E-value=0.18  Score=40.38  Aligned_cols=31  Identities=10%  Similarity=-0.067  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      -+|.+|.+++.+|+|++|...++.+|+..|+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~   33 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD   33 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            3556666666666666666666666666663

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.62  E-value=0.26  Score=39.43  Aligned_cols=40  Identities=15%  Similarity=-0.051  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      .+++.+|.+++++|+|.+|...++.+|+++|+   |..|.--+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~---N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD---NRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---cHHHHHHH
Confidence            35778999999999999999999999999999   77665433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.17  Score=52.97  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=68.6

Q ss_pred             CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      .+........|.=..|+..++++.|..+..+.+.++|.   .+.-+--||.+|..+|.+.-|++|+..+++.+|+.++.
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34556778889999999999999999999999999999   88888999999999999999999999999999965543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.57  E-value=0.9  Score=54.19  Aligned_cols=92  Identities=16%  Similarity=0.016  Sum_probs=75.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      .....++|..|+...++.++..|+.     ..+..-.|..++++|++++|. -|-+++..-+.+  ....+--+-.+|..
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~--D~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGT--DDLTLQFLQNVYRD   89 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCC--chHHHHHHHHHHHH
Confidence            3455778899999999999999988     778888899999999999999 555565544431  56667777889999


Q ss_pred             cCCHHHHHHHHHHHHHcCCC
Q 047433          512 KGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       512 LG~yeEAL~df~kALkl~P~  531 (614)
                      +|++++|+..|++++...|+
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCc
Confidence            99999999999999999885

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.49  E-value=0.075  Score=38.39  Aligned_cols=30  Identities=10%  Similarity=-0.023  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      +|.++|.+|..+|+|++|+..|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            578999999999999999999999776643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.45  E-value=0.62  Score=51.14  Aligned_cols=92  Identities=18%  Similarity=0.004  Sum_probs=55.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      .+..+...|++++|.+...++++..-+.      .+.  +=.-.++.+++..=++..++.++..|+   .+..++.+|+.
T Consensus       269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L  337 (400)
T COG3071         269 YAERLIRLGDHDEAQEIIEDALKRQWDP------RLC--RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRL  337 (400)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhccCh------hHH--HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHH
Confidence            3445556777777777777777654432      111  111123456666666666666666666   56666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCC
Q 047433          509 YDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       509 l~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++..+.+.+|-..|+.+++..|.
T Consensus       338 ~~k~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         338 ALKNKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHhcCCC
Confidence            66666666666666666666653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.30  E-value=0.12  Score=35.38  Aligned_cols=31  Identities=23%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          464 LYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ++.++|.|+.++|++++|+..++++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5778888999999999999999998888886

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=3.2  Score=45.24  Aligned_cols=93  Identities=20%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------------------------CcchhHHHHHHHHHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSR---------------------------------PKNERMVLYSNRAQCHLL  474 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~---------------------------------~~~~~a~lysNRA~~ylk  474 (614)
                      ..+-.+|..|++.+|...+.+.|+-.|.+                                 ...+..-+.--.|.++..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34445566666666666666666655553                                 012234455567899999


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI  523 (614)
Q Consensus       475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~  523 (614)
                      .|-|++|...+++|+++||.   ..-|..-++.++.+.|+++|+++...
T Consensus       188 ~g~y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             hccchhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHH
Confidence            99999999999999999999   66666777777777777777766443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.18  E-value=0.26  Score=42.69  Aligned_cols=81  Identities=21%  Similarity=0.258  Sum_probs=65.1

Q ss_pred             CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHH
Q 047433           76 LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVA  155 (614)
Q Consensus        76 ~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~  155 (614)
                      ||.+.|++.-...++.++           |..+-..+...+++.+-+.++-....++.|+||.|+++|.-. ..-=++.|
T Consensus         2 ~~~~~~~i~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a   69 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS-----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAA   69 (120)
T ss_pred             hHHHcCChHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHH
Confidence            456677777777776543           357778999999999998888888889999999999999975 45557789


Q ss_pred             HHHhhhhhhcccc
Q 047433          156 VRALGHLASYDRT  168 (614)
Q Consensus       156 ~r~l~h~a~~~~~  168 (614)
                      +.+|+.|+....+
T Consensus        70 ~~~L~~l~~~~~~   82 (120)
T cd00020          70 LWALRNLAAGPED   82 (120)
T ss_pred             HHHHHHHccCcHH
Confidence            9999999887653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.13  E-value=0.21  Score=52.56  Aligned_cols=68  Identities=21%  Similarity=0.200  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP  495 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~  495 (614)
                      ....++.+-.+..+++|.+|...|++.+..+|.+     +.+-+|.|.|++-+|+..+|++..+.++..+|..
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-----~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-----AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCc-----hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            3456777777888999999999999999999999     9999999999999999999999999999999983

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.11  E-value=1.7  Score=49.31  Aligned_cols=109  Identities=14%  Similarity=-0.108  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc--------------------chhHHHHHHHHHHHH
Q 047433          414 EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK--------------------NERMVLYSNRAQCHL  473 (614)
Q Consensus       414 eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~--------------------~~~a~lysNRA~~yl  473 (614)
                      +.++..+.-+.++.-.+.+.  ..-..+|...|.+|++......+                    ....-+...+|.|.-
T Consensus       193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar  270 (539)
T PF04184_consen  193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR  270 (539)
T ss_pred             HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence            44444455555555555442  34478999999999987544210                    112445567899999


Q ss_pred             HcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          474 LLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       474 kLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      ++|+.++||+.++..++.+|.. .+...++.+-.++..++.|.++-..+.+.
T Consensus       271 klGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            9999999999999999988751 15678999999999999999776665553

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.89  E-value=4  Score=42.55  Aligned_cols=105  Identities=19%  Similarity=0.045  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------CCcchhHHHHHHHHHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-----------------------------RPKNERMVLYSNRAQCHL  473 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-----------------------------~~~~~~a~lysNRA~~yl  473 (614)
                      +....+.+.-++..|+..+|+......++....                             ......+.++.-+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            335566777788888889999998888872111                             112455667777777777


Q ss_pred             Hc------CCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHcCC
Q 047433          474 LL------REPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG-----------------RESLMDCIMFINGCI  530 (614)
Q Consensus       474 kL------GdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y-----------------eEAL~df~kALkl~P  530 (614)
                      .+      +.+++++..++.|++++|.   +.++|+..|..+..+-+.                 ..|+..|-+++.+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~  340 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPS---WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS  340 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence            77      8889999999999999999   999999999988765322                 236777777777765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK10941 hypothetical protein; Provisional

Probab=92.85  E-value=1.6  Score=45.99  Aligned_cols=78  Identities=18%  Similarity=0.010  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ..-+.+.-..+.+.++|+.|+..-...+.+.|++     +.-+--||.+|.++|.+..|+.|++.-++..|+   .+.+-
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---dp~a~  252 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED-----PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---DPISE  252 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---chhHH
Confidence            4445666678889999999999999999999999     888999999999999999999999999999999   66665


Q ss_pred             HHHHHH
Q 047433          503 WRRSQA  508 (614)
Q Consensus       503 yRRA~A  508 (614)
                      .-+.++
T Consensus       253 ~ik~ql  258 (269)
T PRK10941        253 MIRAQI  258 (269)
T ss_pred             HHHHHH
Confidence            544444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.76  E-value=0.64  Score=40.41  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL  491 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL  491 (614)
                      .+....++|-.+|.+.+.++|+..++++++..++  ++++..++--++.+|...|+|.+++....+-+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999886  3567888889999999999999999987776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.48  E-value=6  Score=41.89  Aligned_cols=96  Identities=20%  Similarity=0.078  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .|..|...+..   .+++.+|.-.|++--+..|..     +.+.+-.|.|++.+|+|++|......||.-+++   ++..
T Consensus       175 LA~awv~la~g---gek~qdAfyifeE~s~k~~~T-----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpet  243 (299)
T KOG3081|consen  175 LAQAWVKLATG---GEKIQDAFYIFEELSEKTPPT-----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPET  243 (299)
T ss_pred             HHHHHHHHhcc---chhhhhHHHHHHHHhcccCCC-----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHH
Confidence            44455443332   446899999999988866666     889999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +.+.-.+-..+|.-.++...+..-++.
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            999999999999999998877666655

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.09  E-value=0.2  Score=51.70  Aligned_cols=59  Identities=25%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP  495 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~  495 (614)
                      .+++.+|++.|.+.|.+|+++.|..     ..-|...+....+.|+++.|.+.+++.+++||.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w-----~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEW-----AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchh-----hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4567899999999999999999999     9999999999999999999999999999999983

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.81  E-value=0.52  Score=41.42  Aligned_cols=57  Identities=16%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433          480 AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV  539 (614)
Q Consensus       480 eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~  539 (614)
                      ..+..++++++-+|+   +..+.|.+|.++...|++++|+.-+..+++.+++..+...+.
T Consensus         6 ~~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~   62 (90)
T PF14561_consen    6 PDIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK   62 (90)
T ss_dssp             HHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH
T ss_pred             ccHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH
Confidence            346778899999999   999999999999999999999999999999998876655443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.81  E-value=0.64  Score=40.67  Aligned_cols=35  Identities=14%  Similarity=-0.064  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      -+...+|..+...|++++|+..+++++++.....|
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            44555555555555555555555555555543333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.42  E-value=0.52  Score=54.05  Aligned_cols=91  Identities=15%  Similarity=0.012  Sum_probs=81.9

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL  514 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~  514 (614)
                      ..|+-..|+.+...|+...|..    .-+-..|+|+..++-|-..+|-....++|.++..   .+-.+|-.|.++..+.+
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAYLALKN  691 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhHHHHhh
Confidence            4678889999999999999874    1456789999999999999999999999999988   77889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 047433          515 GRESLMDCIMFINGCIRS  532 (614)
Q Consensus       515 yeEAL~df~kALkl~P~~  532 (614)
                      .+.|++.|+.|+++.|+.
T Consensus       692 i~~a~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKC  709 (886)
T ss_pred             hHHHHHHHHHHHhcCCCC
Confidence            999999999999998853

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.39  E-value=3.5  Score=45.45  Aligned_cols=89  Identities=19%  Similarity=0.079  Sum_probs=46.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      .+-+.||++.|=.+..++-+..+++    -...+.-|+...+..|++..|....+++++..|.   ++..+--..++|..
T Consensus       127 AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~  199 (400)
T COG3071         127 AAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIR  199 (400)
T ss_pred             HHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHH
Confidence            3334444444444444444442221    1333444555555666666666666666666666   55555555556666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 047433          512 KGLGRESLMDCIMFIN  527 (614)
Q Consensus       512 LG~yeEAL~df~kALk  527 (614)
                      +|++.+.+....+.-+
T Consensus       200 ~g~~~~ll~~l~~L~k  215 (400)
T COG3071         200 LGAWQALLAILPKLRK  215 (400)
T ss_pred             hccHHHHHHHHHHHHH
Confidence            6666655554444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.31  E-value=2  Score=37.77  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHHcCCHHHHH
Q 047433          442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH--CKSLWRRSQAYDMKGLGRESL  519 (614)
Q Consensus       442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~--~KAyyRRA~Al~~LG~yeEAL  519 (614)
                      .+....++++.+|++     ..+...+|..++..|++++|+.-+-.+++-+++   +  ..+--.+-.++..+|.-+.-.
T Consensus         7 ~~~al~~~~a~~P~D-----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~---~~~~~ar~~ll~~f~~lg~~~plv   78 (90)
T PF14561_consen    7 DIAALEAALAANPDD-----LDARYALADALLAAGDYEEALDQLLELVRRDRD---YEDDAARKRLLDIFELLGPGDPLV   78 (90)
T ss_dssp             HHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT---CCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred             cHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---ccccHHHHHHHHHHHHcCCCChHH
Confidence            467788999999999     999999999999999999999999999999988   4  344444445555666554444


Q ss_pred             HHHHH
Q 047433          520 MDCIM  524 (614)
Q Consensus       520 ~df~k  524 (614)
                      ..|++
T Consensus        79 ~~~RR   83 (90)
T PF14561_consen   79 SEYRR   83 (90)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.28  E-value=0.29  Score=50.60  Aligned_cols=59  Identities=12%  Similarity=-0.035  Sum_probs=55.3

Q ss_pred             HHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       471 ~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ...+.++.+.|...+.+|+++-|.   +...|+|.|.-..+.|+++.|.+.|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            455779999999999999999999   99999999999999999999999999999999854

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.25  E-value=5.2  Score=45.38  Aligned_cols=109  Identities=14%  Similarity=0.023  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          415 KVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       415 el~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+..+.-....|..-|.---.++++..|-..|.+||..+..+     ..+|..-+.+-++.+....|-...++|+.+-|.
T Consensus        65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-----itLWlkYae~Emknk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-----ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-----chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence            344444456677777888888899999999999999999888     999999999999999999999999999999998


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                         --+.||.--..-..+|+...|...|.+-++..|+
T Consensus       140 ---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~  173 (677)
T KOG1915|consen  140 ---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD  173 (677)
T ss_pred             ---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence               7788888888888999999999999999999884

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.77  E-value=17  Score=45.90  Aligned_cols=133  Identities=14%  Similarity=-0.071  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      +......|-+.+++++|.+.|++-++---+.     ...|...+..+++..+-++|-....+||+--|. .-|.+..-.-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKF 1606 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHH
Confidence            4455667778888999999999999877655     788999999999999999999999999998886 2367778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHH--HHHHHHHHHhhhhhcCCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMIS--KHMNALWVFGGARSKILSS  569 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~--Kqmea~~lF~~Ai~k~~~~  569 (614)
                      |+.-++.|+.+.+...|+-.+.-.|+..|-     +.-|..+.++  .+--.+.+|++++.+..++
T Consensus      1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDl-----W~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDL-----WSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HHHHhhcCCchhhHHHHHHHHhhCccchhH-----HHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999998854442     2223333333  1223346788888776443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=90.43  E-value=0.4  Score=34.39  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             HHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433          126 FAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLAS  164 (614)
Q Consensus       126 ~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~  164 (614)
                      -+..-++.|+||+|++||.. -..--|+.|+.||+.|++
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence            44556799999999999983 467779999999998863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.03  E-value=0.53  Score=33.60  Aligned_cols=30  Identities=17%  Similarity=0.021  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCL  491 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeL  491 (614)
                      +.+++|+|.+|..+|++++|+..+.+++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345666666666667777666666666654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.94  E-value=1.4  Score=38.49  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=53.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCcc----hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPSRPKN----ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~----~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      ...+.|||.+|++.+.+..+........    ....+..|+|..+...|++++|+..+++|+++-..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999998765322    24678899999999999999999999999988654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.65  E-value=4.3  Score=42.95  Aligned_cols=95  Identities=11%  Similarity=-0.059  Sum_probs=71.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----REPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----GdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      -+.+.+..+++-|.....+..+++.+       ..++.+|++++++    +++.+|.-.|..--+.-|.   .+..+...
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~llnG~  213 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLLLNGQ  213 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHHHccH
Confidence            34455566666666666666666553       3456677777765    4688888888888775555   68999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      +.|+..+|+|+||...++.+|..++++++
T Consensus       214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  214 AVCHLQLGRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence            99999999999999999999999875443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.58  E-value=30  Score=36.36  Aligned_cols=173  Identities=13%  Similarity=-0.007  Sum_probs=100.9

Q ss_pred             HHHHhhchhhhh-hccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 047433          344 AALFLIDLVELN-SLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVL  422 (614)
Q Consensus       344 a~~aLvDLseL~-~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~  422 (614)
                      ++.+.-..+++. ..+++ +..+..++.+- ..|+++    +..++-+-|....++.. +.-+-.             ..
T Consensus        53 AG~aflkaA~~h~k~~sk-hDaat~YveA~-~cykk~----~~~eAv~cL~~aieIyt-~~Grf~-------------~a  112 (288)
T KOG1586|consen   53 AGDAFLKAADLHLKAGSK-HDAATTYVEAA-NCYKKV----DPEEAVNCLEKAIEIYT-DMGRFT-------------MA  112 (288)
T ss_pred             HHHHHHHHHHHHHhcCCc-hhHHHHHHHHH-HHhhcc----ChHHHHHHHHHHHHHHH-hhhHHH-------------HH
Confidence            444444444443 33555 66667766665 355553    22223333444444331 111111             02


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          423 VGLIKQEAKHLFWL-GEIEEAAMKYTEALGVCPSRPK-NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       423 A~~lK~~GN~lFk~-GdyeeAI~~YtkAIel~P~~~~-~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      |.-+...|..+-.. .+++.||..|.+|-+.-..+.. ..--.++...|+---.+++|.+||..|.++....-+.   ..
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            33344444444333 6899999999999887544310 0111233444444456899999999999987654442   23


Q ss_pred             cHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          498 HCKSLW-RRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       498 ~~KAyy-RRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      .+|.|+ +.|.|+....+.-.+...+++..+++|.-.|..
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            566665 557788888999999999999999999766653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=89.40  E-value=1.9  Score=48.64  Aligned_cols=91  Identities=14%  Similarity=0.017  Sum_probs=78.3

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcC
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG  513 (614)
                      ...+.+.|.+......+.-|+.     +..+...|..+...|+.++|+..+++++.....- ..+.-.+|.+|-++..++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s-----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNS-----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence            3556788999999999999999     9999999999999999999999999999544331 124568999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 047433          514 LGRESLMDCIMFINGCI  530 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P  530 (614)
                      +|++|...|.+..+.+.
T Consensus       320 ~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKESK  336 (468)
T ss_pred             hHHHHHHHHHHHHhccc
Confidence            99999999999998743

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.73  E-value=36  Score=39.06  Aligned_cols=86  Identities=7%  Similarity=-0.167  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC-HHHHH
Q 047433          441 EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL-GRESL  519 (614)
Q Consensus       441 eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~-yeEAL  519 (614)
                      .-+..|..|+...+.+     ..+|++-..--.+.+.|.+--..|.++|..+|+   ++..|.-.|.=.+..+. .+.|.
T Consensus        89 rIv~lyr~at~rf~~D-----~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saR  160 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGD-----VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESAR  160 (568)
T ss_pred             HHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHH
Confidence            4467799999998988     899998877777777799999999999999999   99999988888888776 88899


Q ss_pred             HHHHHHHHcCCCCCC
Q 047433          520 MDCIMFINGCIRSET  534 (614)
Q Consensus       520 ~df~kALkl~P~~~D  534 (614)
                      +.|.++|..+|+++.
T Consensus       161 alflrgLR~npdsp~  175 (568)
T KOG2396|consen  161 ALFLRGLRFNPDSPK  175 (568)
T ss_pred             HHHHHHhhcCCCChH
Confidence            999999999996543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.63  E-value=5.3  Score=40.52  Aligned_cols=99  Identities=15%  Similarity=-0.058  Sum_probs=72.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC--CCcchhHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHhcCCC--CC-ccH
Q 047433          432 HLFWLGEIEEAAMKYTEALGVCPS--RPKNERMVLYSNRAQCHLLLRE-------PDAAISDATRALCLSNP--PN-SHC  499 (614)
Q Consensus       432 ~lFk~GdyeeAI~~YtkAIel~P~--~~~~~~a~lysNRA~~ylkLGd-------yeeAI~D~~~ALeLdP~--~~-~~~  499 (614)
                      .+-....+++|++.|.-||-..-.  ......+.++...|-.|-.+|+       +..|+..+.+|++-...  .. ...
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            444456789999999988864321  1123567888889999999998       44566666666654432  11 146


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ...|-.|.....+|++++|+..|.+++...-
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            7899999999999999999999999998843

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=88.18  E-value=2  Score=46.29  Aligned_cols=73  Identities=14%  Similarity=-0.043  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK  537 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~  537 (614)
                      +.+-.|.|.-..+.|+.++|...+..|+.++|.   ++.++.+.|+...+-.+.-+|-.+|-+|+.++|.+..+-+
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            445556666677889999999999999999999   9999999999999999999999999999999998766544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.07  E-value=1.4  Score=49.87  Aligned_cols=108  Identities=12%  Similarity=-0.011  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCC--Ccc-hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEA-LGVCPSR--PKN-ERMVLYSNRAQCHLLLREPDAAISDATRALC-------  490 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkA-Iel~P~~--~~~-~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-------  490 (614)
                      .+..+..+.+..|-.|+|..|....... |.-.|..  ..+ ....+++|+|-+++++|.|..++..|.+||+       
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            5567778889999999999999876532 2222321  111 2356779999999999999999999999996       


Q ss_pred             --cCCC------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          491 --LSNP------PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       491 --LdP~------~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                        +.|.      .+.....+|+.|..|...|+.-+|.++|.++.+..
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence              2222      12367899999999999999999999999999874

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=87.67  E-value=29  Score=39.77  Aligned_cols=100  Identities=12%  Similarity=0.013  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CCCCccHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS-NPPNSHCKSLWR  504 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd-P~~~~~~KAyyR  504 (614)
                      -...|..+.+.|+.++||..|.+.++..|..   ....++.|+..|++.++.|.++-....+==++. |+   +..-.|.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk---SAti~YT  335 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALLELQAYADVQALLAKYDDISLPK---SATICYT  335 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc---hHHHHHH
Confidence            4557888899999999999999999888752   236799999999999999998877666642221 33   3444444


Q ss_pred             HHHHHHH-cCC---------------HHHHHHHHHHHHHcCCC
Q 047433          505 RSQAYDM-KGL---------------GRESLMDCIMFINGCIR  531 (614)
Q Consensus       505 RA~Al~~-LG~---------------yeEAL~df~kALkl~P~  531 (614)
                      .|..... .++               -..|++.+.+|++.+|.
T Consensus       336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            4332211 111               23477889999999874

The molecular function of this protein is uncertain.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.33  E-value=6.4  Score=37.85  Aligned_cols=86  Identities=10%  Similarity=-0.096  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHcC---CcHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433          462 MVLYSNRAQCHLLLR---EPDAAISDATRALC-LSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK  537 (614)
Q Consensus       462 a~lysNRA~~ylkLG---dyeeAI~D~~~ALe-LdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~  537 (614)
                      .....|.|-++.+..   +..+.|..++..++ -+|.  ....-.|.+|..++.+++|+.|+..++.+++..|++.... 
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~-  108 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL-  108 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH-
Confidence            566788888888765   45667888888886 3443  2456677799999999999999999999999988543322 


Q ss_pred             hcchHHHHHHHHHHHHHHH
Q 047433          538 RVKIPYYAARMISKHMNAL  556 (614)
Q Consensus       538 k~kl~~y~~r~i~Kqmea~  556 (614)
                            -..+++.+.|.+.
T Consensus       109 ------~Lk~~ied~itke  121 (149)
T KOG3364|consen  109 ------ELKETIEDKITKE  121 (149)
T ss_pred             ------HHHHHHHHHHhhc
Confidence                  2344566666554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=86.33  E-value=23  Score=44.97  Aligned_cols=97  Identities=8%  Similarity=-0.163  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      |...-|-...-|.-+.-...|.+|.+.|..      ...|..++-.|.+-+.+++|.+.++.-++---+   ..+.|.+.
T Consensus      1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y 1570 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMY 1570 (1710)
T ss_pred             HHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHH
Confidence            333333333346667778889999999865      578999999999999999999999999988777   78999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      |..+....+-++|-.-+.+|++.-|.
T Consensus      1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhhcch
Confidence            99999999999999999999999985

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.19  E-value=76  Score=36.26  Aligned_cols=52  Identities=6%  Similarity=-0.197  Sum_probs=46.7

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433          469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~k  524 (614)
                      |.-++..|+|.+|+..+....+++|.    +.+|--+|.+++...+|+||...+..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            55567899999999999999999997    89999999999999999999987553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.87  E-value=53  Score=34.18  Aligned_cols=109  Identities=16%  Similarity=-0.014  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCC-----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNP-----  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~-----  494 (614)
                      .+..+...+..+.+.|.++.|.....++....+.. ....+.+..-.|..+-..|+..+|+......+.-  ...     
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            55678889999999999999999999999876432 2224667777888999999999999998888871  100     


Q ss_pred             ------------------------CCccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCC
Q 047433          495 ------------------------PNSHCKSLWRRSQAYDMK------GLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       495 ------------------------~~~~~KAyyRRA~Al~~L------G~yeEAL~df~kALkl~P~  531 (614)
                                              .....++++.+|.-...+      +..++++..|+++++++|.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence                                    012457888888888888      9999999999999999873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.76  E-value=2.1  Score=30.38  Aligned_cols=31  Identities=26%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVC  453 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~  453 (614)
                      +..+.+.|+.++..|+|++|+..+.+++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4578899999999999999999999999874

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=84.50  E-value=15  Score=38.37  Aligned_cols=99  Identities=11%  Similarity=-0.086  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH--H-
Q 047433          425 LIKQEAKHLFW-LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC--K-  500 (614)
Q Consensus       425 ~lK~~GN~lFk-~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~--K-  500 (614)
                      .+..-|.--+. .++.+.|...|..+++..|.+     ..++..-..-++++++.+.|-..+++++..-|.   ..  + 
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~~~~~  108 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFWLEYLDFLIKLNDINNARALFERAISSLPK---EKQSKK  108 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HHHCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hhHHHH
Confidence            45566666666 667777999999999999998     888998899999999999999999999988776   33  3 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .|-+-..--...|+.+...+..+++.+..|.
T Consensus       109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  109 IWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            4445566666789999999999999999885

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.47  E-value=12  Score=39.05  Aligned_cols=106  Identities=15%  Similarity=-0.011  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC----C-----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433          421 VLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPS----R-----PKNERMVLYSNRAQCHLLLREPDAAISDATRALC  490 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~----~-----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe  490 (614)
                      ..+..+.+-|..+++.+ +|++|+...++|+++.+.    .     ..+.+...+..++.+|+..+.++...+ |..+++
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~  111 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence            57889999999999999 999999999999999422    1     235788899999999999998765444 555544


Q ss_pred             c----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          491 L----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       491 L----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .    .|+   .+..++-.=.++...++.+++...+.+.+...+
T Consensus       112 ~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  112 LLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            3    355   566665555555558888988888888887643

It is also involved in sporulation [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=83.68  E-value=14  Score=44.71  Aligned_cols=98  Identities=16%  Similarity=0.013  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      -+..-+|-.+++.|++++|....+.--..-+++     -..+.-.-.||..++++++|...|.+++.-+|.    .+..+
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~----eell~  114 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS----EELLY  114 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc----HHHHH
Confidence            345567888999999999995554333334444     555666778999999999999999999999998    56666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..-.+|..-+.|.+--+.--+..+..|
T Consensus       115 ~lFmayvR~~~yk~qQkaa~~LyK~~p  141 (932)
T KOG2053|consen  115 HLFMAYVREKSYKKQQKAALQLYKNFP  141 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            677778777777654444444444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=83.10  E-value=7.5  Score=40.64  Aligned_cols=98  Identities=12%  Similarity=-0.093  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL-LREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk-LGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      |....+..-+.+..+.|-..|.+|++..+..     ..+|..-|..-+. .++.+.|...++.+++.-|.   +...+..
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~   75 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT-----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence            3344444444555888999999998654444     6778877888666 56666799999999999999   8888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      -..-+..+++.+.|...|++++...|.
T Consensus        76 Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   76 YLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            888899999999999999999998763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=82.88  E-value=38  Score=37.98  Aligned_cols=144  Identities=17%  Similarity=0.049  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH--LLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~y--lkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      .+...+....-.|+|++|-..|+--+. +|..      .+.--||.-+  ..+|+++.|+++..+|-+.-|.   -.-+.
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~---l~WA~  191 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAMLD-DPET------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ---LPWAA  191 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC---CchHH
Confidence            455667777889999999999986655 6652      3344444333  3689999999999999999999   55555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK  582 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~  582 (614)
                      .-.=.....-|+++.|++..+.......-.++.              -++..+..+-.++.+.-...             
T Consensus       192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--------------aeR~rAvLLtAkA~s~ldad-------------  244 (531)
T COG3898         192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--------------AERSRAVLLTAKAMSLLDAD-------------  244 (531)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh--------------HHHHHHHHHHHHHHHHhcCC-------------
Confidence            545567788999999999887766542211111              01111112222333222111             


Q ss_pred             cchhhhHHHHHHHHHHhcccccCCcc
Q 047433          583 SGIEEQRYCDMIRTMMEKKNLISGKL  608 (614)
Q Consensus       583 ~g~~eQ~~dD~iral~~~~~~~~g~~  608 (614)
                         ..++.++..++.+++|+|.|+-.
T Consensus       245 ---p~~Ar~~A~~a~KL~pdlvPaav  267 (531)
T COG3898         245 ---PASARDDALEANKLAPDLVPAAV  267 (531)
T ss_pred             ---hHHHHHHHHHHhhcCCccchHHH
Confidence               45788999999999999988754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.82  E-value=8.3  Score=40.33  Aligned_cols=106  Identities=14%  Similarity=-0.007  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCC---CccHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-NERMVLYSNRAQCHLL-LREPDAAISDATRALCLSNPP---NSHCK  500 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-~~~a~lysNRA~~ylk-LGdyeeAI~D~~~ALeLdP~~---~~~~K  500 (614)
                      -...+...|+.++.++|+....++|++-.+..+ ..-+..+.-.|..|-. +.++++||..|.+|-+.-...   ...-|
T Consensus        76 ~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK  155 (288)
T KOG1586|consen   76 TYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK  155 (288)
T ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence            334455567888999999999999998765310 0112234445555554 589999999999998654321   12447


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .+...|+--..+++|.+|+.-|++.....-+
T Consensus       156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888888888999999999999999887654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.16  E-value=10  Score=37.20  Aligned_cols=85  Identities=9%  Similarity=-0.053  Sum_probs=67.3

Q ss_pred             cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433          458 KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK  537 (614)
Q Consensus       458 ~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~  537 (614)
                      ++..-.++..+|.-|.+.|++++|++.|.++.+-..........+++.-.+....|++......+.++-.+.....|.+.
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~  111 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER  111 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence            34456789999999999999999999999988766543335678888899999999999999999999888655445444


Q ss_pred             hcchH
Q 047433          538 RVKIP  542 (614)
Q Consensus       538 k~kl~  542 (614)
                      +.++.
T Consensus       112 ~nrlk  116 (177)
T PF10602_consen  112 RNRLK  116 (177)
T ss_pred             HHHHH
Confidence            44443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.03  E-value=3.9  Score=47.31  Aligned_cols=92  Identities=15%  Similarity=-0.013  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      +|+..+|+.+|..|+-..|..   ..-.++.-+|.++.+.|.-.+|--....|+.-.|.   .+.-+|-+|+++.++|+|
T Consensus       226 ~G~~~~A~~Ca~~a~hf~~~h---~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~---~t~n~y~l~~i~aml~~~  299 (886)
T KOG4507|consen  226 KGEPYQAVECAMRALHFSSRH---NKDIALLSLATVLHRAGFSADAAVILHAALDDADF---FTSNYYTLGNIYAMLGEY  299 (886)
T ss_pred             cCChhhhhHHHHHHhhhCCcc---cccchhhhHHHHHHHcccccchhheeehhccCCcc---ccccceeHHHHHHHHhhh
Confidence            678899999999999998763   23567778899999999999998888899988888   677799999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCC
Q 047433          516 RESLMDCIMFINGCIRSE  533 (614)
Q Consensus       516 eEAL~df~kALkl~P~~~  533 (614)
                      ..++..|..+.+..|...
T Consensus       300 N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  300 NHSVLCYDHALQARPGFE  317 (886)
T ss_pred             hhhhhhhhhhhccCcchh
Confidence            999999999999988643

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=81.34  E-value=15  Score=35.36  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHh-hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          438 EIEEAAMKYTEALG-VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       438 dyeeAI~~YtkAIe-l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      +..+.|..++..++ -.|.    .+-.+.+-+|..+.++|+|+.++..++..|+.+|+   |..|.--
T Consensus        50 dv~~GI~iLe~l~~~~~~~----~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~---n~Qa~~L  110 (149)
T KOG3364|consen   50 DVQEGIVILEDLLKSAHPE----RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN---NRQALEL  110 (149)
T ss_pred             HHHHhHHHHHHHhhhcCcc----cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC---cHHHHHH
Confidence            45778999998887 3333    34677788999999999999999999999999999   7766543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.12  E-value=45  Score=35.59  Aligned_cols=157  Identities=9%  Similarity=0.022  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      ..-..|+..-+.+|.++|.+     -..|.-|=.++-.++ +..+-+...+..++-+|.   |...|..|-.+...+|++
T Consensus        57 E~S~RAl~LT~d~i~lNpAn-----YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK---NYQvWHHRr~ive~l~d~  128 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPAN-----YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK---NYQVWHHRRVIVELLGDP  128 (318)
T ss_pred             ccCHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHHhcCc
Confidence            34567888888899999988     788888888887765 566777888888888899   899998888888899988


Q ss_pred             H-HHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHh-hhhhcCCCCCCCCccC------CcCCcccchhh
Q 047433          516 R-ESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFG-GARSKILSSPVNNVQE------SYGENKSGIEE  587 (614)
Q Consensus       516 e-EAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~-~Ai~k~~~~~~~~~~e------~~~~~~~g~~e  587 (614)
                      . .-+...+.++..+.+  +-.+-. ...++.|..+. .+....|. +.++.+.-.-...++.      ..+-.....-+
T Consensus       129 s~rELef~~~~l~~DaK--NYHaWs-hRqW~~r~F~~-~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le  204 (318)
T KOG0530|consen  129 SFRELEFTKLMLDDDAK--NYHAWS-HRQWVLRFFKD-YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELE  204 (318)
T ss_pred             ccchHHHHHHHHhcccc--chhhhH-HHHHHHHHHhh-HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHH
Confidence            8 777778888876332  111111 11122222222 22222222 2333331111111111      11222223445


Q ss_pred             hHHHHHHHHHHhcccccC
Q 047433          588 QRYCDMIRTMMEKKNLIS  605 (614)
Q Consensus       588 Q~~dD~iral~~~~~~~~  605 (614)
                      .++..++.+|...|+..|
T Consensus       205 ~El~yt~~~I~~vP~NeS  222 (318)
T KOG0530|consen  205 RELNYTKDKILLVPNNES  222 (318)
T ss_pred             HHHHHHHHHHHhCCCCcc
Confidence            677888888888888765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.83  E-value=2.4  Score=31.73  Aligned_cols=29  Identities=3%  Similarity=-0.271  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      ..|.++|.+-...++|++|+.||++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888889999999999999999887

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.80  E-value=22  Score=39.77  Aligned_cols=101  Identities=13%  Similarity=0.076  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CCC-CccH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS----NPP-NSHC  499 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd----P~~-~~~~  499 (614)
                      .+.+.|..+...|++..|+..|.++-..|...  +-....+.|.-.+-+-+|+|........+|..--    ... ...+
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            57788999999999999999999988888752  4445677888888888999999888888887541    100 1134


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      +..--.|.++..+++|+.|.+.|..+-.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6777789999999999999988776643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=80.42  E-value=2.9  Score=36.12  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             hhHhhHHHHHhhcCCC-CCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCc
Q 047433           58 VLALSGLWNIAMTQPD-DPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVI  136 (614)
Q Consensus        58 ~~~~~~~~~~~~~~p~-~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~  136 (614)
                      .-++..|++++-..|. -.+|-+.|+++=+..++.           ++|.-+=.+|+=+++..+=+..+-.+..++.|+|
T Consensus        25 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l   93 (120)
T cd00020          25 REAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-----------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV   93 (120)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-----------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence            3578888888776433 233445577776666654           2345555678888888888888899999999999


Q ss_pred             hHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433          137 PPLMELLRGKISWVEQRVAVRALGHLAS  164 (614)
Q Consensus       137 ~~l~~~~~~~~~wve~r~~~r~l~h~a~  164 (614)
                      |.|+++|... +.=-++.|.-+|++|++
T Consensus        94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          94 PKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            9999999876 33344578888887763

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=80.32  E-value=14  Score=42.12  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      -++.|..-+.-..++.+...|-...-.||-.||.+      .++-.--..-+++++++.+-..|.+-|+.+|.   +..+
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c~~  473 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NCYA  473 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hhHH
Confidence            34455555666667777888888888888888874      34444445556788888888889999999998   8888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      |..-|..-..||+.+.|..-|.-|+.-
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            888888888899999888888888765

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.07  E-value=2.6  Score=47.79  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC--------CCC----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALG-VC--------PSR----PKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIe-l~--------P~~----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      ....+.+.|-.+|+.|.|..++..|.+|+. .|        |..    ...-..++.+|-|..|+..|++-.|.+.+.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            344578999999999999999999999995 22        110    11234678999999999999999999999999


Q ss_pred             HhcCCCCCccHHHHHHHHHHHHH
Q 047433          489 LCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       489 LeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      ...--.   ++..|.|+|.|..+
T Consensus       362 v~vfh~---nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHR---NPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhc---CcHHHHHHHHHHHH
Confidence            988777   88999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	614
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-08

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +++E   LF  G+   A   YT+ALG+  + P+++  VL+ NRA CHL L + D A ++A
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQ-AVLHRNRAACHLKLEDYDKAETEA 88
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
           ++A+          K+L+RRSQA  ++ LGR  L   ++ +  C+  E  +K
Sbjct: 89  SKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLQRCVSLEPKNK 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	614
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 412 SEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQC 471
                      V  +++E   LF  G+   A   YT+ALG+  +       VL+ NRA C
Sbjct: 17  EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA--VLHRNRAAC 74

Query: 472 HLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR--ESLMDC 522
           HL L + D A ++A++A+   +  +   K+L+RRSQA   + LGR  ++++D 
Sbjct: 75  HLKLEDYDKAETEASKAIEK-DGGDV--KALYRRSQAL--EKLGRLDQAVLDL 122

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 78.4 bits (193), Expect = 7e-16
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 397 ELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR 456
            LK   + +E   M SEEK+E+      ++K+     F  G+ ++A ++Y + +      
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQ----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE 180

Query: 457 P----------KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506
                      +  R+  + N A CHL L+   AAI    +AL L +  N   K L RR 
Sbjct: 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-DSNNE--KGLSRRG 237

Query: 507 QAYDMKGLGRESLMD 521
           +A+        +  D
Sbjct: 238 EAHLAVNDFELARAD 252

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 398 LKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP 457
           L  +  K+       EEKV+        IK+E    F   EI EA +KY EAL       
Sbjct: 17  LYFQGAKKSIYDYTDEEKVQS----AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72

Query: 458 -----------KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506
                      KN  +    N A C+   ++   AI  A++ L + +  N   K+L++  
Sbjct: 73  EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNV--KALYKLG 129

Query: 507 QAYDMKGLGRESLMDC 522
            A    G   E+  + 
Sbjct: 130 VANMYFGFLEEAKENL 145

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 406 EKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLY 465
            ++  ++ E  +E        K +    F  G+   A   Y EA+   P        +LY
Sbjct: 3   ARLAYINPELAQEE-------KNKGNEYFKKGDYPTAMRHYNEAVKRDPENA-----ILY 50

Query: 466 SNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR--ESLMDC 522
           SNRA C   L E   A+ D    + L +      K   R++       +    ++    
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRL-DSKFI--KGYIRKAACL--VAMREWSKAQRAY 104

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           + E K  F   +   A   YTE +   P          YSNRA     L     AI+D  
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYSNRAAALAKLMSFPEAIADCN 62

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           +A+   +P     ++  R++ A         +L   
Sbjct: 63  KAIEK-DPNFV--RAYIRKATAQIAVKEYASALETL 95

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 404 KREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMV 463
                  M+ +    +       K +    F  G+  +A   YTEA+   P         
Sbjct: 4   HHHHHSHMNPDLALMV-------KNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-----K 51

Query: 464 LYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           LYSNRA C+  L E   A+ D    + L  P     K   R++ A +      +++   
Sbjct: 52  LYSNRAACYTKLLEFQLALKDCEECIQL-EPTFI--KGYTRKAAALEAMKDYTKAMDVY 107

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ 470
           M     +E+       K++   LF   +  EAA  Y  A+   P        V Y+NRA 
Sbjct: 4   MKSPSAQEL-------KEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRAL 51

Query: 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           C+L +++P+ A++D  RAL L +  +   K+ +   Q         E++ + 
Sbjct: 52  CYLKMQQPEQALADCRRALEL-DGQSV--KAHFFLGQCQLEMESYDEAIANL 100

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 413 EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH 472
           E   +        +K +A   F   + E A   Y++A+ + PS       + Y NR+  +
Sbjct: 3   EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLAY 57

Query: 473 LLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           L       A+ DATRA+ L +      K  +RR+ +    G  R +L D
Sbjct: 58  LRTECYGYALGDATRAIEL-DKKYI--KGYYRRAASNMALGKFRAALRD 103

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 20/125 (16%)

Query: 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE--------- 460
              ++K++     V  ++Q+   LF   + +EA   Y +AL    +    E         
Sbjct: 2   NAEDDKLKS----VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE 57

Query: 461 ----RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516
                + LY+N +QC+L + +   A   ++  L      N   K+L+RR++A        
Sbjct: 58  LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-EETNE--KALFRRAKARIAAWKLD 114

Query: 517 ESLMD 521
           E+  D
Sbjct: 115 EAEED 119

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 67.2 bits (165), Expect = 7e-14
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 17/103 (16%)

Query: 414 EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHL 473
           E+V E+       K++      +G I++A   Y+EA+ + P        VLYSNR+  + 
Sbjct: 2   EQVNEL-------KEKGNKALSVGNIDDALQCYSEAIKLDPHNH-----VLYSNRSAAYA 49

Query: 474 LLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516
              +   A  D  + + L  P     K   R++ A   + L R
Sbjct: 50  KKGDYQKAYEDGCKTVDL-KPDWG--KGYSRKAAAL--EFLNR 87

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 71.1 bits (174), Expect = 9e-14
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K++   LF   +  EAA  Y  A+   P        V Y+NRA C+L +++P+ A++D  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRALCYLKMQQPEQALADCR 62

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           RAL L +  +   K+ +   Q         E++ + 
Sbjct: 63  RALEL-DGQSV--KAHFFLGQCQLEMESYDEAIANL 95

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K E        E  +A   YT+AL + P+ P     +  SNRA  +    + + A  DA 
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANP-----IYLSNRAAAYSASGQHEKAAEDAE 69

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516
            A  + +P  S  K+  R   A     +  
Sbjct: 70  LATVV-DPKYS--KAWSRLGLAR--FDMAD 94

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K E      +   E A   Y +A+ + P+       V + NRA  +  L     A+ D  
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIELNPANA-----VYFCNRAAAYSKLGNYAGAVQDCE 70

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           RA+C+ +P  S  K+  R   A        E++  
Sbjct: 71  RAICI-DPAYS--KAYGRMGLALSSLNKHVEAVAY 102

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K++   LF  G   EA   Y + +   P  P     V YSN+A   + L E   AI    
Sbjct: 8   KEQGNSLFKQGLYREAVHCYDQLITAQPQNP-----VGYSNKAMALIKLGEYTQAIQMCQ 62

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMK 512
           + L              R    Y ++
Sbjct: 63  QGLRY-TSTAE--HVAIRSKLQYRLE 85

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 15/126 (11%)

Query: 408 MMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE------- 460
               S+  VEE        K +   LF   ++EEA  +Y  A+         +       
Sbjct: 164 GKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQD 223

Query: 461 -----RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515
                +   + N A C + L+  D AI      L      N   K+L+RR +A    G  
Sbjct: 224 MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-EEKNP--KALFRRGKAKAELGQM 280

Query: 516 RESLMD 521
             +  D
Sbjct: 281 DSARDD 286

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K+     +   + + A   Y +A  + P+          +N+A  +    + +       
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNM-----TYITNQAAVYFEKGDYNKCRELCE 62

Query: 487 RALCL----SNPPNSHCKSLWRRSQAYDMKG 513
           +A+ +            K+  R   +Y  + 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEE 93

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
           +K +A   F   + E A   Y++A+ + PS       + Y NR+  +L       A+ DA
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLAYLRTECYGYALGDA 63

Query: 486 TRALCLSNPPNSHCKSLWRRSQAY 509
           TRA+ L      + K  +RR+ + 
Sbjct: 64  TRAIEL---DKKYIKGYYRRAASN 84

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 415 KVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP----------KNERMVL 464
             +E      ++K++    F  G+  +A ++Y + +                 ++  +  
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           + N A C+L LRE   A+    +AL L +  N   K L+RR +A  +      +  D 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGL-DSAN--EKGLYRRGEAQLLMNEFESAKGDF 374

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K      +   + E+A + Y +A+ + PS         Y+N+A  +   ++    +    
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNI-----TFYNNKAAVYFEEKKFAECVQFCE 66

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           +A+ +              ++A    G   +   D
Sbjct: 67  KAVEV-GRETR--ADYKLIAKAMSRAGNAFQKQND 98

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
            + A+ L   G   +A  KY   +   PS      +        C     +P  AI   +
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIA-EYTVRSKERICHCFSKDEKPVEAIRVCS 319

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKG 513
             L +  P   +  +L  R++AY ++ 
Sbjct: 320 EVLQM-EP--DNVNALKDRAEAYLIEE 343

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATR 487
            +A + F  G+   A     + L VC    +     L   RA+C +   EP  AISD   
Sbjct: 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAE-----LRELRAECFIKEGEPRKAISDLKA 202

Query: 488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAAR 547
           A  L    N+  ++ ++ S  Y   G    SL +    +  C++ +   KR    Y   +
Sbjct: 203 ASKL-KNDNT--EAFYKISTLYYQLGDHELSLSE----VRECLKLDQDHKRCFAHYKQVK 255

Query: 548 MISKHMNA 555
            ++K + +
Sbjct: 256 KLNKLIES 263

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
            +  K L   G++ +A  ++  A+   P          Y  RA   L + +  AA+ D T
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----AYYRRATVFLAMGKSKAALPDLT 84

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKG 513
           + + L         +  +R      +G
Sbjct: 85  KVIQL-KM--DFTAARLQRGHLLLKQG 108

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALG---VCPSRPKNE------- 460
           +  + V+++ ++   +K      F     E A  KYT+ L       +  ++        
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270

Query: 461 -RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAY 509
             +    N   C L + +   A+     AL +     S+ K+L+RR+Q +
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGW 317

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 37/254 (14%)

Query: 287 RILCYSKTGRKN--IAECKQVIE----------NLCNLSRSSDDWQYMGIDCLLFLLKDP 334
           R     K G+ +    + K+V++              L ++ +  +        F   D 
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 335 D---TRY-KVIETAALFLIDLVELNSLLDRPKNLGEAI---TRALLLD-------YKLTE 380
               T   K++E                 +     +AI     A  L        YK++ 
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196

Query: 381 QKFKNKKVQKALEEIWE-LKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI 439
             ++    + +L E+ E LK+++  +       + K       +  + + A+ L   G  
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------KLNKLIESAEELIRDGRY 250

Query: 440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC 499
            +A  KY   +   PS  +   +        C     +P  AI   +  L +  P   + 
Sbjct: 251 TDATSKYESVMKTEPSVAE-YTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EP--DNV 306

Query: 500 KSLWRRSQAYDMKG 513
            +L  R++AY ++ 
Sbjct: 307 NALKDRAEAYLIEE 320

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
            +  K L   G++ +A  ++  A+   P          Y  RA   L + +  AA+ D T
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----AYYRRATVFLAMGKSKAALPDLT 61

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKG 513
           + + L         +  +R      +G
Sbjct: 62  KVIAL-KM--DFTAARLQRGHLLLKQG 85

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 35/265 (13%), Positives = 88/265 (33%), Gaps = 18/265 (6%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
           LL D++  +   AA ++   +  +           ++  ++  ++        R     L
Sbjct: 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217

Query: 160 GHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYV-------NFVAVKDRKKRLKYHS 212
            +L+ +      +A+++   +   + +  + +D V         N +  ++  K     +
Sbjct: 218 HNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275

Query: 213 DLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKE-RSLDLICNKQEFLMDLCNMW 271
             L + V  L   N K            L +L  +  +E + + L     + L+++  M 
Sbjct: 276 GGLQKMVALLNKTNVKFLAIT----TDCLQIL-AYGNQESKLIILASGGPQALVNI--MR 328

Query: 272 GGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLL 331
                        ++++L    + +  I E    ++ L                  L  L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNL 387

Query: 332 KDPDTRYKVIETAALFLIDLVELNS 356
            D  T+ + +E     L+ L+  + 
Sbjct: 388 SDAATKQEGMEGLLGTLVQLLGSDD 412

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 46/306 (15%), Positives = 89/306 (29%), Gaps = 53/306 (17%)

Query: 60  ALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSY 119
            L  L N++            G+   + +L+         LL   +I +   AA ++ + 
Sbjct: 380 CLWTLRNLSDAATK-----QEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNL 426

Query: 120 TMNKVEFAEKAVKSGVIPPLMELLRGKISWVE-QRVAVRALGHLASYDRTFDSV--AVYE 176
           T N  +      + G I  L+  +       +    A+ AL HL S  +  +    AV  
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 177 EEVVKLAMQLASTCLDVVYV-------NFVAVKDRKKRLKYHSDLLTRGVGGLEFENQKA 229
              + + ++L         +         +A+             + R V  L   +Q  
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 230 EEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRIL 289
           +           ++                + E +++ C               G + IL
Sbjct: 547 QRRTSMGGTQQQFVEGV-------------RMEEIVEAC--------------TGALHIL 579

Query: 290 CYSKTGRKNIAECKQVIENLCNLSRSSDDW-QYMGIDCLLFLLKDPDTRYKVIETAAL-F 347
                 R  I      I     L  S  +  Q +    L  L +D +    +    A   
Sbjct: 580 ARDIHNRIVIRGLN-TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638

Query: 348 LIDLVE 353
           L +L+ 
Sbjct: 639 LTELLH 644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K +    F   + ++A   Y  AL +          V YSN + C++ + +    +  +T
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELKEDP------VFYSNLSACYVSVGDLKKVVEMST 63

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
           +AL L  P  S  K L RR+ A +  G   +++ D
Sbjct: 64  KALEL-KPDYS--KVLLRRASANEGLGKFADAMFD 95

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492
            F   +   A   YTE +   P   +      YSNRA     L     AI+D  +A+   
Sbjct: 149 YFTKSDWPNAVKAYTEMIKRAPEDAR-----GYSNRAAALAKLMSFPEAIADCNKAIEK- 202

Query: 493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           +P     ++  R++ A         +L   
Sbjct: 203 DPNFV--RAYIRKATAQIAVKEYASALETL 230

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486
           K    H F      EA   Y  A+ + P+ P     V YSN + C++   + +  I   T
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-----VFYSNISACYISTGDLEKVIEFTT 83

Query: 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522
           +AL +  P   H K+L RR+ A +  G   +++ D 
Sbjct: 84  KALEI-KP--DHSKALLRRASANESLGNFTDAMFDL 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 51/431 (11%), Positives = 117/431 (27%), Gaps = 152/431 (35%)

Query: 301 ECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDR 360
           +CK V +   ++    +      ID    ++   D       +  L L        LL +
Sbjct: 34  DCKDVQDMPKSILSKEE------ID---HIIMSKDA-----VSGTLRLFWT-----LLSK 74

Query: 361 PKNLGEA-ITRALLLDYKLTEQKFKNKKVQKALE-EIWELKVER------------RKRE 406
            + + +  +   L ++YK      K ++ Q ++   ++  + +R              R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 407 KMMMMSEEKVEEMR----------------VLVGLIKQEAK-------HLFWLG----EI 439
           +  +   + + E+R                 +   +    K        +FWL       
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 440 EEAAMKYTEALGVC----------PSRPKNERMVL---------------YSN------- 467
            E  ++  + L                  N ++ +               Y N       
Sbjct: 195 PETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 468 -------RA---QCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRE 517
                   A    C +LL      ++D      LS    +H       S  +    L  +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDF-----LSAATTTH------ISLDHHSMTLTPD 301

Query: 518 SLMDCIMFIN--GCIRSETTSKRVKIPYYAARMIS---KHMNALW-----VFGGARSKIL 567
            +    + +    C   +   + +        +I+   +   A W     V     + I+
Sbjct: 302 EVKS--LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 568 SSPVNN-----VQESYGE-----NKSGIEEQRYC-----------DMIRTMMEKKNLISG 606
            S +N       ++ +         + I                  ++   + K +L+  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 607 K----LCAIHS 613
           +      +I S
Sbjct: 420 QPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 73/528 (13%), Positives = 149/528 (28%), Gaps = 181/528 (34%)

Query: 1   MDSLTTKVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVLA 60
           +  L  +++ N  + +  +          +    + LRR       K  P ++    +L 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRR-----LLKSKPYENC---LLV 249

Query: 61  LSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYT 120
           L  + N       +         +C   L ++     D+L      +I     H   + T
Sbjct: 250 LLNVQNAKAWNAFN--------LSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLT 299

Query: 121 MNKVE--FAEKA-VKSGVIP-------PLM-----ELLRGKIS----WVEQRVAVRALGH 161
            ++V+    +    +   +P       P       E +R  ++    W  + V    L  
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTT 357

Query: 162 L--ASYD--------RTFDSVAVYEEEVVKLAMQLASTC-LDVVY--VNFVAVKDRKKRL 208
           +  +S +        + FD ++V+      +   L S    DV+   V  V  K  K  L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 209 KYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLC 268
                                E+   +    S+  +         L+L   K E    L 
Sbjct: 417 --------------------VEKQPKESTI-SIPSI--------YLELKV-KLENEYAL- 445

Query: 269 NMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCN--LSRSSDD---WQYMG 323
                   H                   ++I +   + +   +  L     D   + ++G
Sbjct: 446 --------H-------------------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 324 IDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKF 383
                         +       L  I+  E  +L            R + LD++  EQK 
Sbjct: 479 --------------HH------LKNIEHPERMTLF-----------RMVFLDFRFLEQKI 507

Query: 384 KNKKV-QKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEA 442
           ++      A   I     + +  +  +  ++ K E +                +  I + 
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL----------------VNAILDF 551

Query: 443 AMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAI-SDATRAL 489
             K  E L           ++         + L   D AI  +A + +
Sbjct: 552 LPKIEENLICSKYT----DLL--------RIALMAEDEAIFEEAHKQV 587

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 19/191 (9%)

Query: 52  QDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNR--DWLLRDQNIYIP 109
            D Q+ + A      I   +   P+            +I  GV  R  +++  +Q   + 
Sbjct: 99  DDMQEQLSATVKFRQILSREHRPPI----------DVVIQAGVVPRLVEFMRENQPEMLQ 148

Query: 110 YYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTF 169
             AA  + +         +  V +  +P  ++LL      V +  A+ ALG++A     +
Sbjct: 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV-KEQAIWALGNVAGDSTDY 207

Query: 170 DSVAVYEEEVVKLAMQLASTCLDVVYV------NFVAVKDRKKRLKYHSDLLTRGVGGLE 223
               +    +  +     S    ++        N    K  +      S  L      + 
Sbjct: 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 267

Query: 224 FENQKAEEWAC 234
             + +    AC
Sbjct: 268 SMDTETLVDAC 278

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 21/268 (7%)

Query: 100 LLRDQNIYIPYYAAHVIG--SYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVR 157
           +  +       +A   +     T+N            VI PL+ LL+   + +E   ++ 
Sbjct: 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603

Query: 158 ALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDV------VYVNFVAVKDRKKRLKYH 211
           AL +LAS + +     + E+ V K+   L    L +         N V  +D  K  + +
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663

Query: 212 SDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQ---EFLMDLC 268
           +D +       E E+++              L    +   +  + I       + L  L 
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGA------LAIITSVSVKCCEKILAIASWLDILHTLI 717

Query: 269 NMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLL 328
                 V H     V ++ ++   +   K + E   ++E L  L +  DD +    +   
Sbjct: 718 ANPSPAVQHR--GIVIILNMINAGEEIAKKLFE-TDIMELLSGLGQLPDDTRAKAREVAT 774

Query: 329 FLLKDPDTRYKVIETAALFLIDLVELNS 356
             L     RY++IE +    I  V   +
Sbjct: 775 QCLAA-AERYRIIERSDNAEIPDVFAEN 801

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.6 bits (99), Expect = 8e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE-------RMVLYSNRAQCHLLLREPD 479
             +A+     GE +EAA     A+ +  + P  E           ++  A+    LR  D
Sbjct: 15  LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74

Query: 480 AAISDATRALCLSNP-----PNSH---CKSLWRRSQAYDMKGLGR 516
            A+  A +AL   N       +       +++ R+ A  + GLGR
Sbjct: 75  EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALA--LDGLGR 117

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 45/279 (16%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
           LL D++  +   AA ++   +  +           ++  ++  ++        R     L
Sbjct: 22  LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 81

Query: 160 GHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYV-------NFVAVKDRKKRLKYHS 212
            +L+ +      +A+++   +   +++  + +D V         N +  ++  K     +
Sbjct: 82  HNLSHHREG--LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139

Query: 213 DLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKE-RSLDLICNKQEFLMDLCNMW 271
             L + V  L   N K            L +L  +  +E + + L     + L+++    
Sbjct: 140 GGLQKMVALLNKTNVKFLAIT----TDCLQIL-AYGNQESKLIILASGGPQALVNI---- 190

Query: 272 GGLVNHNSP----AGVGLIRILCYSKTGRKNIAEC--------------KQVIEN----L 309
             +  +           ++++L    + +  I E               +++++N    L
Sbjct: 191 --MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248

Query: 310 CNLSRSSDDWQYM--GIDCLLFLLKDPDTRYKVIETAAL 346
            NLS ++   + M   +  L+ LL   D          L
Sbjct: 249 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 46/323 (14%), Positives = 88/323 (27%), Gaps = 51/323 (15%)

Query: 27  FCTMEEPNSSLRRAGVASFFKEMPLQDDQQHVL--ALSGLWNIAMTQPDDPLFPALGIFN 84
                    ++  AG         L D  Q ++   L  L N++            G+  
Sbjct: 210 LSVCSSNKPAIVEAGGMQALGLH-LTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEG 263

Query: 85  CMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLR 144
            + +L+         LL   +I +   AA ++ + T N  +      + G I  L+  + 
Sbjct: 264 LLGTLVQ--------LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 145 GKISWVE-QRVAVRALGHLASYDRTFDSV--AVYEEEVVKLAMQLASTCLDVVYV----- 196
                 +    A+ AL HL S  +  +    AV     + + ++L         +     
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 197 ---NFVAVKDRKKRL--------------KYHSDLLTRGVGGLEFENQKAEEWACQLQCW 239
              N          L              + H D   R   G   +         ++   
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 435

Query: 240 SLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSP----AGVGLIRILCYSKTG 295
               L+  A    +  +I      +         L+            G++  L   K  
Sbjct: 436 CTGALHILARDVHNRIVI-RGLNTIPLFVQ----LLYSPIENIQRVAAGVLCELAQDKEA 490

Query: 296 RKNIAECKQVIENLCNLSRSSDD 318
            + I         L  L  S ++
Sbjct: 491 AEAIEAEG-ATAPLTELLHSRNE 512

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 38/280 (13%), Positives = 95/280 (33%), Gaps = 47/280 (16%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
           LL D++  +   AA ++   +  +           ++  ++  ++        R     L
Sbjct: 25  LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 84

Query: 160 GHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYV-------NFVAVKDRKKRLKYHS 212
            +L+ +      +A+++   +   +++  + +D V         N +  ++  K     +
Sbjct: 85  HNLSHHREG--LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 142

Query: 213 DLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQ--EFLMDLCNM 270
             L + V  L   N K            L +L  +  +E S  +I      + L+++   
Sbjct: 143 GGLQKMVALLNKTNVKFLAIT----TDCLQIL-AYGNQE-SKLIILASGGPQALVNI--- 193

Query: 271 WGGLVNHNSP----AGVGLIRILCYSKTGRKNIAEC--------------KQVIEN---- 308
              +  +           ++++L    + +  I E               +++++N    
Sbjct: 194 ---MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250

Query: 309 LCNLSRSSDDWQYM--GIDCLLFLLKDPDTRYKVIETAAL 346
           L NLS ++   + M   +  L+ LL   D          L
Sbjct: 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 40/296 (13%), Positives = 81/296 (27%), Gaps = 48/296 (16%)

Query: 52  QDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYY 111
              +     L  L N++            G+   + +L+         LL   +I +   
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQ--------LLGSDDINVVTC 285

Query: 112 AAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVE-QRVAVRALGHLASYDRTFD 170
           AA ++ + T N  +      + G I  L+  +       +    A+ AL HL S  +  +
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345

Query: 171 SV--AVYEEEVVKLAMQLASTCLDVVYV-------NFVAVKDRKKRL------------- 208
               AV     + + ++L         +         +A+                    
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405

Query: 209 --KYHSDLLTRGVGGLEFENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMD 266
             + H D   R   G   +         ++       L+  A    +  +I      +  
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPL 464

Query: 267 LCNMWGGLVNHNSP----AGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDD 318
                  L+            G++  L   K   + I         L  L  S ++
Sbjct: 465 FVQ----LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATAPLTELLHSRNE 515

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
            L   +      A   +        E  +  + +G +P L++LL      +  + A+ AL
Sbjct: 20  QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWAL 78

Query: 160 GHLASYD 166
            ++AS  
Sbjct: 79  SNIASGG 85

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 52  QDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYY 111
            +        S L N++      PL   +        +     ++       ++I     
Sbjct: 343 GNSDVVRSGASLLSNMSR----HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS--S 396

Query: 112 AAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASY 165
           A + + +   ++ + A++   S ++  ++ L R   S      A   L  + S 
Sbjct: 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 53  DDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYA 112
            ++    A   L N+A+   +  L         +   +  G  N  W   +  +      
Sbjct: 368 HERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVI---SI 423

Query: 113 AHVIGSYTMNKVEFAEKAVKSGVIPPLMELLR-GKISWVEQRVAVRALGHLASY 165
            + I       +E A+K  ++  I  L+ + + G  S  E R A   L  +  Y
Sbjct: 424 LNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
            L   ++     A         +  E  +  + +G +P L++LL      +  + A+ AL
Sbjct: 20  QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWAL 78

Query: 160 GHLASYD 166
            ++AS  
Sbjct: 79  SNIASGG 85

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 51/330 (15%), Positives = 101/330 (30%), Gaps = 56/330 (16%)

Query: 53  DDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYA 112
             +Q + A      +   +P+ P+   +     ++  +        +L R +N  + + +
Sbjct: 33  SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE-------FLKRKENCTLQFES 85

Query: 113 AHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSV 172
           A V+ +            +++G +P  +ELL  +   V Q  AV ALG++A         
Sbjct: 86  AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV-QEQAVWALGNIAGDSTMC-RD 143

Query: 173 AVYEEEVVKLAMQLASTCLDVVYV--------NFVAVKDRKKRLKYHSDLLTRGVGGLEF 224
            V +  ++   +QL S    +           N    K         S  L      L  
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203

Query: 225 ENQKAEEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVG 284
            +      A    CW+L  L      ++   +I         L      L+ HN    V 
Sbjct: 204 SDTDVLADA----CWALSYL-SDGPNDKIQAVI--DAGVCRRLVE----LLMHNDYKVVS 252

Query: 285 -----LIRILCYSKTGRKNIAEC------------------KQVIENLCNLSRSSDDW-- 319
                +  I+       + I  C                  K+    + N++  +     
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 320 ---QYMGIDCLLFLLKDPDTRYKVIETAAL 346
                     L+ +L+  + R +     A+
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492
              LG  E+A   Y+    +  + P+        + A+CHL L + D A S    A  L 
Sbjct: 62  RQSLGLYEQALQSYSYGALMDINEPR-----FPFHAAECHLQLGDLDGAESGFYSARAL- 115

Query: 493 NPPNSHCKSLWRRSQAY 509
                  ++L  R+ A 
Sbjct: 116 AAAQPAHEALAARAGAM 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	614
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.64
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.5
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.49
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.49
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.48
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.44
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.41
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.31
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.24
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.24
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.2
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.2
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.1
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.03
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.98
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.98
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.95
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.94
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.93
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.93
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.89
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.87
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.78
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.63
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.63
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.6
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.59
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.57
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.55
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.52
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.45
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.43
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.34
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.27
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.21
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.11
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.1
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.06
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.03
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.93
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.9
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.85
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.75
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.59
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.48
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.44
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.44
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.37
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.25
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.17
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.98
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.91
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.5
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.28
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.9
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.71
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.64
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.61
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.42
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.4
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.63
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.59
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	94.59
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	94.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.31
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	94.19
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.04
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	93.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.91
3nmz_A	458	APC variant protein; protein-protein complex, arma	93.84
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	93.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.65
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.38
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.33
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.78
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.73
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	92.38
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	91.84
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	91.68
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	91.3
3nmz_A	458	APC variant protein; protein-protein complex, arma	91.28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	91.08
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.38
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	89.71
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	89.5
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	89.47
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	89.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	88.07
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	87.55
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	87.53
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	86.78
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	86.02
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	84.73
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	82.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	82.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	82.88
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.61
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.94
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	80.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	80.83

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=3.9e-18  Score=152.06  Aligned_cols=106  Identities=23%  Similarity=0.213  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ++.++.++++|+.+|+.|+|++|+..|+++|+++|.+     +.+|.|+|.||.++|++++|+.++++||+++|+   +.
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~   81 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FI   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hh
Confidence            4577899999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++|+++|.++..+|++++|+.+|+++++++|++.
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999999999999643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=2e-17  Score=150.41  Aligned_cols=111  Identities=23%  Similarity=0.287  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCC-----cchhHHHHHHHHHHHHHcCCcHHHHHH
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV--------CPSRP-----KNERMVLYSNRAQCHLLLREPDAAISD  484 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel--------~P~~~-----~~~~a~lysNRA~~ylkLGdyeeAI~D  484 (614)
                      ++.+.+..+++.|+.+|+.|+|++|+..|+++|.+        .|.+.     ......+|.|+|.||+++|+|++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34557889999999999999999999999999999        22221     122378999999999999999999999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          485 ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       485 ~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      |++||+++|.   +.++|+++|.+|..+|++++|+.+|+++++++|+
T Consensus        86 ~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           86 SSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            9999999999   9999999999999999999999999999999884

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.72  E-value=6.1e-17  Score=153.97  Aligned_cols=111  Identities=22%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-------RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-  491 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-------~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-  491 (614)
                      ...+..+++.|+.+|+.|+|++|+..|++||+++|+       +.....+.+|+|||.|+.++|+|++|+.+|++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            347889999999999999999999999999999998       311123459999999999999999999999999999 


Q ss_pred             ------CCCCCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          492 ------SNPPNSHCKSL----WRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       492 ------dP~~~~~~KAy----yRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                            +|+   +.++|    |++|.++..+|++++|+.+|++++++.|++.
T Consensus        88 n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           88 NRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence                  999   99999    9999999999999999999999999988533

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.70  E-value=1.4e-16  Score=141.73  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc---
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS---  497 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~---  497 (614)
                      +.+..+++.|+.+|+.|+|++|+..|++||+++|++     +.+|.|+|.+|+++|+|++|+.++++||+++|....   
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence            467789999999999999999999999999999999     999999999999999999999999999999987211   


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          498 -HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       498 -~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                       ..++|+++|.++..+|++++|+..|+++++..|
T Consensus        81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence             247999999999999999999999999999987

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.4e-15  Score=132.04  Aligned_cols=101  Identities=21%  Similarity=0.111  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.++..|+|++|+..|+++|+++|.+     +.+|.|+|.+|+++|+|++|+.+++++++++|+   +..+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   74 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRA   74 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHH
Confidence            56789999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |+++|.++..+|++++|+..|++++++.|
T Consensus        75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           75 YIRKATAQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999983

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=5.2e-15  Score=151.05  Aligned_cols=289  Identities=14%  Similarity=0.064  Sum_probs=195.4

Q ss_pred             hcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHH
Q 047433          291 YSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAI  368 (614)
Q Consensus       291 ~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~i  368 (614)
                      +...|+  +|+..++++++..|+..     ..|..++.++...++.+.+...+.+++..-||......      .+|..+
T Consensus        77 ~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------~l~~~~  145 (388)
T 1w3b_A           77 YKERGQLQEAIEHYRHALRLKPDFI-----DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS------DLGNLL  145 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH------HHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCcchH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------HHHHHH
Confidence            344554  79999999999888776     67888888888999999999999888887777655441      111111


Q ss_pred             H-----HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 047433          369 T-----RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEA  442 (614)
Q Consensus       369 t-----~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeA  442 (614)
                      .     ..-...|..... .|++..+...+..+.... .+.+...  ..-.+-+...+..+..+...|..+...|++++|
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~--~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAI--HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            1     011122222222 455555554444332211 0000100  011111112223456788999999999999999


Q ss_pred             HHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433          443 AMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC  522 (614)
Q Consensus       443 I~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df  522 (614)
                      +..|.+++.+.|++     ..++.++|.+|.++|++++|+..++++++++|+   +..+++.+|.++...|++++|+..|
T Consensus       223 ~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          223 VAAYLRALSLSPNH-----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             HHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHhhCcCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999     999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhccc
Q 047433          523 IMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       523 ~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~  602 (614)
                      ++++++.|++.  .....+. ......++.-++...|.+++...+..+.............|..+++...+.+++..+|+
T Consensus       295 ~~al~~~p~~~--~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          295 NTALRLCPTHA--DSLNNLA-NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHCTTCH--HHHHHHH-HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHhhCcccH--HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99999988533  2222221 11112233345566677776655443333333333445667778888888888888776


Q ss_pred             cc
Q 047433          603 LI  604 (614)
Q Consensus       603 ~~  604 (614)
                      +.
T Consensus       372 ~~  373 (388)
T 1w3b_A          372 FA  373 (388)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=1.3e-14  Score=148.02  Aligned_cols=286  Identities=14%  Similarity=-0.005  Sum_probs=196.1

Q ss_pred             hcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhh--------hccCC
Q 047433          291 YSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELN--------SLLDR  360 (614)
Q Consensus       291 ~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~--------~Lg~~  360 (614)
                      +...|+  +|+..++.+++..|+.+     ..|..++.++...++.+.+...+.+++..-|+.....        ..|..
T Consensus        43 ~~~~~~~~~a~~~~~~a~~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  117 (388)
T 1w3b_A           43 HFQCRRLDRSAHFSTLAIKQNPLLA-----EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM  117 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH
Confidence            344555  78889999999988877     7899999999999999999999999988877765532        11222


Q ss_pred             CcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433          361 PKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE  440 (614)
Q Consensus       361 ~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye  440 (614)
                       ...-+.+.+++..       .|++..+...+..+.... .+.+...  ..-..-+...+..+..+...|..+...|+++
T Consensus       118 -~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~-g~~~~A~--~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  186 (388)
T 1w3b_A          118 -EGAVQAYVSALQY-------NPDLYCVRSDLGNLLKAL-GRLEEAK--ACYLKAIETQPNFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             -SHHHHHHHHHHHH-------CTTCTHHHHHHHHHHHTT-SCHHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             -HHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHc-cCHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence             2222222222221       455554444444333211 0111111  1111111222334567889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433          441 EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM  520 (614)
Q Consensus       441 eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~  520 (614)
                      +|+..|+++++++|+.     ..++.++|.++...|++++|+..+.++++++|+   +..+++.+|.++..+|++++|+.
T Consensus       187 ~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~  258 (388)
T 1w3b_A          187 LAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             HHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999     999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhc
Q 047433          521 DCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEK  600 (614)
Q Consensus       521 df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~  600 (614)
                      .|+++++..|+..+.  ...+. ......++..++...|.+++...+..+.............+..+++...+.+++...
T Consensus       259 ~~~~al~~~p~~~~~--~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          259 TYRRAIELQPHFPDA--YCNLA-NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHTCSSCHHH--HHHHH-HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhhCCCCHHH--HHHHH-HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999998854332  22222 122223334556677888877765443333333333344555566666666666655


Q ss_pred             ccc
Q 047433          601 KNL  603 (614)
Q Consensus       601 ~~~  603 (614)
                      |++
T Consensus       336 p~~  338 (388)
T 1w3b_A          336 PEF  338 (388)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.60  E-value=1.4e-14  Score=134.53  Aligned_cols=104  Identities=13%  Similarity=-0.042  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..+..+...|..+++.|+|++|+..|++++.++|.+     +.+|.|+|.+|..+|+|++|+..|++|++++|+   ++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~  104 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DY  104 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---Cc
Confidence            3455689999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .+|+++|.+|..+|++++|+..|++++++.|+
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999883

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=2.2e-14  Score=130.57  Aligned_cols=108  Identities=19%  Similarity=0.058  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|+.++..|+|++|+..|+++|+++|.+     ..+|.|+|.+|+++|+|++|+.+++++++++|+   +..
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~   80 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSK   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Confidence            367789999999999999999999999999999999     999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      +|+++|.+|..+|++++|+..|++++++.|++.+..
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            999999999999999999999999999999766543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=1.3e-14  Score=139.40  Aligned_cols=169  Identities=12%  Similarity=-0.004  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|+++|+++|++     +.++.++|.++..+|++++|+..++++++++|+   +..++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~   76 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD-----PEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGY   76 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHH
Confidence            4467788888888888888888888888888888     888888888888888888888888888888888   88888


Q ss_pred             HHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 047433          503 WRRSQAYDMK-----------GLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPV  571 (614)
Q Consensus       503 yRRA~Al~~L-----------G~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~  571 (614)
                      +.+|.++..+           |++++|+..|++++++.|++...  ...+. .+....++.-++...|.+++..+ ..+.
T Consensus        77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~--~~~lg-~~~~~~g~~~~A~~~~~~al~~~-~~~~  152 (217)
T 2pl2_A           77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL--HLQRG-LVYALLGERDKAEASLKQALALE-DTPE  152 (217)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHH-HHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred             HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH--HHHHH-HHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence            8888888888           88888888888888888853322  22222 12222333445666777777766 4444


Q ss_pred             CCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          572 NNVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       572 ~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ...+........|..+++...+.+++...|++
T Consensus       153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          153 IRSALAELYLSMGRLDEALAQYAKALEQAPKD  184 (217)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            44444444455666777777777777777765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=3.3e-14  Score=130.29  Aligned_cols=171  Identities=10%  Similarity=0.040  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+.+.|+.++..|+|++|+..|+++|+++|++     +.++.++|.+|.++|++++|+..+.+++..+|.   +..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~   75 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEA   75 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHH
Confidence            45678899999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN  581 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~  581 (614)
                      +..+|.++...+++++|...+.+++++.|++.+.  ...+. ......++..++...|.+++..++..+....+.+....
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~--~~~lg-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADA--YYKLG-LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH--HHHHH-HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            9999999999999999999999999999854332  22222 22222334456667788888877666655555566667


Q ss_pred             ccchhhhHHHHHHHHHHhcccc
Q 047433          582 KSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       582 ~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ..|..++++..+.++|..+|+.
T Consensus       153 ~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HCCCHHHHHHHHHHHHhCCccC
Confidence            7888889999999999988864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.55  E-value=1e-13  Score=124.02  Aligned_cols=104  Identities=6%  Similarity=-0.065  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|++++..+|.+     +.+|.++|.+|..+|+|++|+..++++++++|+   ++.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~   88 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHH
Confidence            45578899999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.++..+|++++|+..|++++++.|+++
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999988544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.54  E-value=2.4e-14  Score=136.58  Aligned_cols=169  Identities=11%  Similarity=0.017  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHH----------------HHHHHHHcCCcHHHHHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSN----------------RAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysN----------------RA~~ylkLGdyeeAI~D~~  486 (614)
                      +..+..+|..++..|+|++|+..|+++++++|++     +.++.+                +|.+|.++|++++|+..++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4578889999999999999999999999999998     888888                9999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      ++++++|+   +..+++.+|.++..+|++++|+..|+++++++|++.+.......-++... ....-.....|..++.  
T Consensus        79 ~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~--  152 (208)
T 3urz_A           79 ELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-EQEKKKLETDYKKLSS--  152 (208)
T ss_dssp             HHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHC---C--
T ss_pred             HHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhC--
Confidence            99999999   99999999999999999999999999999999965443322222211111 1111112233333321  


Q ss_pred             CCCCCC--CccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          567 LSSPVN--NVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       567 ~~~~~~--~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                       +++..  ....+......+..+++..++.+++..+|+.
T Consensus       153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence             11110  0111112223445567888888888888864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.54  E-value=1.1e-13  Score=126.26  Aligned_cols=104  Identities=10%  Similarity=0.025  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|++++.++|.+     +.+|.++|.+|..+|+|++|+..++++++++|+   ++.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~   91 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRF   91 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchH
Confidence            45578899999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.+|..+|++++|+..|++++++.|+++
T Consensus        92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           92 PFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            99999999999999999999999999998643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=4e-14  Score=134.44  Aligned_cols=101  Identities=17%  Similarity=0.070  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCP-SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P-~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ..+...|..++..|+|++|+..|+++++++| .+     ..++.++|.++..+|++++|+..++++++++|.   +..++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~   79 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-----SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAY   79 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHH
Confidence            4678888888888888888888888888887 66     778888888888888888888888888888888   88888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +.+|.++..+|++++|+..|++++++.|++
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            888888888888888888888888888853

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=1.3e-13  Score=148.56  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----------cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP----------KNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~----------~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      +..+..++.+|+.+++.|+|++|+..|++||+++|.+.          ......+|+|+|.||+++|+|++|+.+|++||
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44677899999999999999999999999999999862          22346899999999999999999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      +++|+   +.++|+++|.+|..+|++++|+.+|+++++++|++...
T Consensus       345 ~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a  387 (457)
T 1kt0_A          345 GLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA  387 (457)
T ss_dssp             HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred             hcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999   99999999999999999999999999999999976553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=3.3e-14  Score=163.03  Aligned_cols=169  Identities=14%  Similarity=-0.051  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+.+.|+.+.+.|+|++|+..|++||+++|++     +.+|+|+|.+|.++|++++|+..+++||+++|+   +..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a   79 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADA   79 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            45566666666666666666666666666666666     666666666666666666666666666666666   6666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN  581 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~  581 (614)
                      |+++|.+|..+|++++|++.|+++++++|++.+.  ...+. .+....++..++...|+++++.++..+....+......
T Consensus        80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a--~~~Lg-~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A           80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA--HSNLA-SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHH-HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            6666666666666666666666666666643222  12221 12222333344555566666555444433333333333


Q ss_pred             ccchhhhHHHHHHHHHHhcc
Q 047433          582 KSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       582 ~~g~~eQ~~dD~iral~~~~  601 (614)
                      ..+.-+++.+.+.+++...|
T Consensus       157 ~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          157 IVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HTTCCTTHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCh
Confidence            44444445555555544443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=5.1e-12  Score=119.14  Aligned_cols=210  Identities=15%  Similarity=0.080  Sum_probs=150.2

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchh-------hhhhccCC
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLV-------ELNSLLDR  360 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLs-------eL~~Lg~~  360 (614)
                      ++...|+  +|+..+.++++.. +     +...+..++.++..+++.+.+...+.+++...++..       .+.     
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-----   82 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELH-K-----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF-----   82 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-C-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-----
T ss_pred             HHHHhccHHHHHHHHHHHHHhh-c-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH-----
Confidence            4445555  7888888888876 3     336777888888888888888888888877666531       111     


Q ss_pred             CcCcHHHHHH-----HHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047433          361 PKNLGEAITR-----ALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFW  435 (614)
Q Consensus       361 ~k~lGe~it~-----aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk  435 (614)
                       ..+|..+..     .-...|........+......+....+.. +..++..  ..       .+..+..+...|..++.
T Consensus        83 -~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~-~~~~~~~--~~-------~~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           83 -ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL-KKAEAEA--YV-------NPEKAEEARLEGKEYFT  151 (258)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHH--HC-------CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH-HHHHHHH--Hc-------CcchHHHHHHHHHHHHH
Confidence             111111110     00012222212122233333333322222 1111111  22       23356689999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .|+|++|+..|+++++..|.+     ..++.++|.+|..+|++++|+..++++++++|+   +..+++.+|.++..+|++
T Consensus       152 ~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~  223 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEY  223 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred             hcCHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999     999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 047433          516 RESLMDCIMFINGC  529 (614)
Q Consensus       516 eEAL~df~kALkl~  529 (614)
                      ++|+..|++++++.
T Consensus       224 ~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          224 ASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999998

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=2.9e-13  Score=126.81  Aligned_cols=112  Identities=23%  Similarity=0.184  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcch-----------hHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE-----------RMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~-----------~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      +....+..+...|+.++..|+|++|+..|.+++++.|.+....           ...++.|+|.+|+++|+|++|+.+++
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3456788999999999999999999999999999999872111           13899999999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++++++|.   +.++++++|.++..+|++++|+..|++++++.|++
T Consensus       113 ~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          113 KVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            99999999   99999999999999999999999999999999853

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.52  E-value=3e-13  Score=139.54  Aligned_cols=111  Identities=22%  Similarity=0.189  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----------cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP----------KNERMVLYSNRAQCHLLLREPDAAISDATRAL  489 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~----------~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL  489 (614)
                      +..+..+...|+.+++.|+|++|+..|++||++.|.+.          ......+|.|+|.||+++|+|++|+..|++||
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999862          12335899999999999999999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +++|+   +.++|+++|.+|..+|++++|+.+|++++++.|++.
T Consensus       224 ~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          224 ELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            99999   999999999999999999999999999999999644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=4.3e-13  Score=122.83  Aligned_cols=101  Identities=15%  Similarity=0.065  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..++++.|+..+.+++.+.|.+     ..++.++|.+|.++|++++|+..++++++++|.   +..+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~  143 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRA  143 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhH
Confidence            34467888999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |+.+|.+|..+|++++|+..|+++++++|
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999977

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=2.6e-14  Score=147.79  Aligned_cols=144  Identities=18%  Similarity=0.081  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------------cchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP------------KNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~------------~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      ++..+..++..|+.+++.|+|++|+..|++||.+.|.+.            ......+|.|+|.||+++|+|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345677899999999999999999999999999999761            00011489999999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      +||+++|+   +.++|+++|.+|..+|++++|+.+|++++++.|++...  ...+.....+.......+...|.+++...
T Consensus       255 ~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a--~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          255 IVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI--RRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             HHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             HHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999   99999999999999999999999999999999864432  33333222222222233345566665554


Q ss_pred             C
Q 047433          567 L  567 (614)
Q Consensus       567 ~  567 (614)
                      +
T Consensus       330 p  330 (338)
T 2if4_A          330 D  330 (338)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.51  E-value=3.9e-13  Score=116.70  Aligned_cols=102  Identities=25%  Similarity=0.266  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|++++.++|.+     ..++.++|.+++.+|++++|+..++++++++|.   +..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   79 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA   79 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHH
Confidence            46689999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++.+|.++..+|++++|+..|++++++.|+
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999999999999885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.50  E-value=9.6e-13  Score=132.80  Aligned_cols=228  Identities=12%  Similarity=0.003  Sum_probs=149.0

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhh--------hccC
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELN--------SLLD  359 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~--------~Lg~  359 (614)
                      ++...|+  +|+..++++++..|+.+     ..+..++.++..+++.+.+...+.+++..-++.....        .+|.
T Consensus        74 ~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  148 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAAILQDPGDA-----EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH  148 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence            3444554  78888899998887766     6788888888888888888888888877665544332        1111


Q ss_pred             CCcCcHHHHHHHHHHhhhhhhhccCc---HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH--HHHHHHHHHHHHH
Q 047433          360 RPKNLGEAITRALLLDYKLTEQKFKN---KKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRV--LVGLIKQEAKHLF  434 (614)
Q Consensus       360 ~~k~lGe~it~aLl~dy~~~~~~p~n---~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~--~A~~lK~~GN~lF  434 (614)
                      . ...-+.+.+++.............   ......+..+.... .+.+...  ..-.+-+...+.  .+..+...|..++
T Consensus       149 ~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~--~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          149 Q-QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVK--ELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             H-HHHHHHHHHHHHHCHHHHCC-------------------CC-HHHHHHH--HHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHH--HHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            1 111111112221111100000000   00000000000000 0000000  000011111111  3557888999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL  514 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~  514 (614)
                      ..|++++|+..|.+++++.|.+     +.++.++|.+|..+|++++|+..++++++++|+   +..+++.+|.+|..+|+
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---FIRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCC
Confidence            9999999999999999999999     999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 047433          515 GRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       515 yeEAL~df~kALkl~P~~~D  534 (614)
                      +++|+..|++++++.|+..+
T Consensus       297 ~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          297 YREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             CHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhCcccCC
Confidence            99999999999999987554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.49  E-value=3.3e-12  Score=125.74  Aligned_cols=196  Identities=16%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             cccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHH
Q 047433          292 SKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAIT  369 (614)
Q Consensus       292 ~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it  369 (614)
                      ...|+  +|+..+.++++..|+-.     ..+..++.++..+++.+.+...+.+++...++.....      ..+|..+.
T Consensus        14 ~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~~~   82 (359)
T 3ieg_A           14 LAAGQLADALSQFHAAVDGDPDNY-----IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------LQRGHLLL   82 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcccH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH------HHHHHHHH
Confidence            34454  68888888888777655     6677777777888888888888877776655443332      11111111


Q ss_pred             HH-----HHHhhhhhhh-cc---CcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433          370 RA-----LLLDYKLTEQ-KF---KNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE  440 (614)
Q Consensus       370 ~a-----Ll~dy~~~~~-~p---~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye  440 (614)
                      ..     -...|..... .|   .+......+..                         ......+...|..++..|+++
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK-------------------------ADEMQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHccCHH
Confidence            00     0011111111 11   11111111111                         112223444556666666666


Q ss_pred             HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433          441 EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM  520 (614)
Q Consensus       441 eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~  520 (614)
                      +|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|.   +..+++.+|.++..+|++++|+.
T Consensus       138 ~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          138 AAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             HHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665     566666666666666666666666666666666   66666666666666666666666


Q ss_pred             HHHHHHHcCCC
Q 047433          521 DCIMFINGCIR  531 (614)
Q Consensus       521 df~kALkl~P~  531 (614)
                      .|+++++..|+
T Consensus       210 ~~~~a~~~~~~  220 (359)
T 3ieg_A          210 EVRECLKLDQD  220 (359)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhhCcc
Confidence            66666666553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.49  E-value=1.7e-13  Score=124.80  Aligned_cols=103  Identities=11%  Similarity=-0.152  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.+++.|+|++|+..|+++|+++|++     +.+|.++|.+|.++|++++|+..++++++++|+   +..+
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  101 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-----PKAHRFLGLLYELEENTDKAVECYRRSVELNPT---QKDL  101 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---CHHH
Confidence            45577889999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMD-CIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~d-f~kALkl~P~~  532 (614)
                      |+++|.+|..+|++++|... ++++++++|++
T Consensus       102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            99999999999999988876 58999999953

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=7.7e-14  Score=148.09  Aligned_cols=141  Identities=14%  Similarity=0.099  Sum_probs=104.8

Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCcch
Q 047433          382 KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGE-IEEAAMKYTEALGVCPSRPKNE  460 (614)
Q Consensus       382 ~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gd-yeeAI~~YtkAIel~P~~~~~~  460 (614)
                      .|.+.++...+..+.... ++.+...  .....-+...+..+..+..+|..+...|+ +++|+..|+++|+++|++    
T Consensus        93 ~p~~~~a~~~lg~~~~~~-g~~~~Al--~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----  165 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRD-ERSERAF--KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----  165 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHT-CCCHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----
T ss_pred             ChhhHHHHHHHHHHHHHC-CChHHHH--HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----
Confidence            455555555444443322 1122222  33334444455567788888888888886 888888888888888888    


Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          461 RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       461 ~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                       ..+|+|||.++..+|++++|+.++++||+++|+   +..+|+.+|.++..+|++++|+.+|+++++++|++.
T Consensus       166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          166 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence             888888888888888888888888888888888   888888888888888888888888888888888543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.48  E-value=2.9e-12  Score=128.23  Aligned_cols=226  Identities=12%  Similarity=-0.028  Sum_probs=150.1

Q ss_pred             HHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcC
Q 047433          286 IRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKN  363 (614)
Q Consensus       286 ~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~  363 (614)
                      .+-.++...|+  +|+..+.++++..|+.+     ..+..++.++..+++.+.+...+.+++...++.....      ..
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~  137 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHM-----EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL------MA  137 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHH------HH
Confidence            33444555565  78888888888777655     6677777788888888888888877776655543332      11


Q ss_pred             cHHHHHH-----HHHHhhhhhhh-ccCcHHHHH----------------HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 047433          364 LGEAITR-----ALLLDYKLTEQ-KFKNKKVQK----------------ALEEIWELKVERRKREKMMMMSEEKVEEMRV  421 (614)
Q Consensus       364 lGe~it~-----aLl~dy~~~~~-~p~n~e~~~----------------aL~el~~lkvEr~erEk~~~ls~eel~~~~~  421 (614)
                      +|..+..     .-...|..... .|.+.....                .+..+....  +.+...  ..-..-+...+.
T Consensus       138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~--~~~~~a~~~~p~  213 (368)
T 1fch_A          138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS--LFLEVK--ELFLAAVRLDPT  213 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH--HHHHHH--HHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc--cHHHHH--HHHHHHHHhCcC
Confidence            1111110     00011111111 111110000                011111000  111111  111111111222


Q ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          422 --LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       422 --~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                        .+..+...|..++..|++++|+..|.+++++.|.+     +.++.++|.++..+|++++|+..++++++++|.   +.
T Consensus       214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~  285 (368)
T 1fch_A          214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YI  285 (368)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cH
Confidence              35678899999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+++.+|.++..+|++++|+..|++++++.|+..+
T Consensus       286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999886633

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.48  E-value=8.8e-13  Score=126.54  Aligned_cols=198  Identities=15%  Similarity=0.033  Sum_probs=117.8

Q ss_pred             hhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHH
Q 047433          289 LCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGE  366 (614)
Q Consensus       289 ~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe  366 (614)
                      .++...|+  +|+..++++|+..|+.+     ..+..++.++..+++.+.....+++++..-|+..+..      ..+|.
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~lg~   81 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQDP-----EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY------MVLSE   81 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSSCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH------HHHHH
Confidence            35556676  89999999999999888     7888899999999999999999998888877665554      33333


Q ss_pred             HHHHHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 047433          367 AITRALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMK  445 (614)
Q Consensus       367 ~it~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~  445 (614)
                      .+...-.    .... ....+...+++..+..        .         ++..+..+..+...|..++..|++++|+..
T Consensus        82 ~~~~~~~----~~~~~~~~~g~~~~A~~~~~~--------a---------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           82 AYVALYR----QAEDRERGKGYLEQALSVLKD--------A---------ERVNPRYAPLHLQRGLVYALLGERDKAEAS  140 (217)
T ss_dssp             HHHHHHH----TCSSHHHHHHHHHHHHHHHHH--------H---------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhhh----hhhhhcccccCHHHHHHHHHH--------H---------HHhCcccHHHHHHHHHHHHHcCChHHHHHH
Confidence            3222200    0000 0000111111111111        1         111122344566777777777777777777


Q ss_pred             HHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          446 YTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       446 YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      |+++++++ ++     +.++.|+|.+|..+|++++|+..++++++++|+   +..+++.+|.++..+|++++|+..|+++
T Consensus       141 ~~~al~~~-~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          141 LKQALALE-DT-----PEIRSALAELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHC-CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHhcc-cc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            77777777 66     777777777777777777777777777777777   7777777777777777777777777665


Q ss_pred             HH
Q 047433          526 IN  527 (614)
Q Consensus       526 Lk  527 (614)
                      -.
T Consensus       212 ~~  213 (217)
T 2pl2_A          212 HH  213 (217)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=3e-12  Score=113.48  Aligned_cols=106  Identities=25%  Similarity=0.262  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ...+..+...|..++..|+|++|+..|.++++..|.+     ..++.++|.++..+|+|++|+..++++++++|.   +.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~   81 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YI   81 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cH
Confidence            3477889999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      .+++.+|.++..+|++++|+..|++++++.|++.
T Consensus        82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999988533

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.46  E-value=4.8e-13  Score=140.86  Aligned_cols=105  Identities=21%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCCcchhHHHHHHHHHHHHHcCCcHHHH
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALG----------------VCPSRPKNERMVLYSNRAQCHLLLREPDAAI  482 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIe----------------l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI  482 (614)
                      ....+..++..|+.+++.|+|++|+..|++||+                +.|..     ..+|.|+|.||+++|+|++|+
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-----LSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-----HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-----HHHHHHHHHHHHhccCHHHHH
Confidence            344677899999999999999999999999999                45555     899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          483 SDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       483 ~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .++++||+++|+   +.++|+++|.+|..+|++++|+.+|++++++.|+
T Consensus       294 ~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          294 DSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             HHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            999999999999   9999999999999999999999999999999985

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.46  E-value=7e-12  Score=129.25  Aligned_cols=198  Identities=17%  Similarity=0.172  Sum_probs=117.6

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHH
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEA  367 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~  367 (614)
                      ++...|+  +|+..+.++++..|+.+     ..+..++.++..+++.+.+...+.+++...++.....      ..+|..
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~~~  103 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDGDPDNY-----IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR------LQRGHL  103 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH------HHHHHH
Confidence            3444555  78889999998877655     6777788888888888888888888877665544333      111111


Q ss_pred             HHH-----HHHHhhhhhhh-ccCcH---HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047433          368 ITR-----ALLLDYKLTEQ-KFKNK---KVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGE  438 (614)
Q Consensus       368 it~-----aLl~dy~~~~~-~p~n~---e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gd  438 (614)
                      +..     .....|..... .|.+.   .....+..                         ......+...|..++..|+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~a~~~~~~~~  158 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK-------------------------SDEMQRLRSQALNAFGSGD  158 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHcCC
Confidence            110     00011111111 22222   11111111                         1122234555666666666


Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES  518 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA  518 (614)
                      +++|+..|+++++..|.+     ..++.++|.+|.++|++++|+..++++++++|.   +..+++.+|.++..+|++++|
T Consensus       159 ~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          159 YTAAIAFLDKILEVCVWD-----AELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666666     666666666666666666666666666666666   666666666666666666666


Q ss_pred             HHHHHHHHHcCCC
Q 047433          519 LMDCIMFINGCIR  531 (614)
Q Consensus       519 L~df~kALkl~P~  531 (614)
                      +..|+++++..|+
T Consensus       231 ~~~~~~~~~~~p~  243 (450)
T 2y4t_A          231 LSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCC
Confidence            6666666666664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.46  E-value=4.5e-13  Score=118.16  Aligned_cols=100  Identities=12%  Similarity=0.022  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|++++|+..|.++++++|++     +.+|.++|.++..+|++++|+..+++|++++|+   +..+++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~   90 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAA   90 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence            46778999999999999999999999999999     999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +|.++..+|++++|+..|++++++.|++
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999998853

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=1.7e-13  Score=137.55  Aligned_cols=102  Identities=25%  Similarity=0.273  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|+.++..|+|++|+..|+++|+++|.+     +.+|.|+|.+|.++|+|++|+.++++|++++|+   +.+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~   75 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH   75 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            5578999999999999999999999999999999     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +++|.+|..+|++++|+..|++++++.|++
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999998854

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=4e-12  Score=125.15  Aligned_cols=278  Identities=10%  Similarity=-0.009  Sum_probs=183.2

Q ss_pred             HHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhh---chhhhhhccCC
Q 047433          286 IRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLI---DLVELNSLLDR  360 (614)
Q Consensus       286 ~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLv---DLseL~~Lg~~  360 (614)
                      .+-.|+...|+  +|+..+.++++..|+..     ..+..++.++...++.+.+...+.++....+   +.....     
T Consensus        42 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----  111 (359)
T 3ieg_A           42 RRATVFLAMGKSKAALPDLTKVIALKMDFT-----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE-----  111 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH-----
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH-----
Confidence            34456667776  89999999999988766     7788889999999999999998888876655   333332     


Q ss_pred             CcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433          361 PKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE  440 (614)
Q Consensus       361 ~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye  440 (614)
                       ..++......  ..+.........+....++..+....          .       ..+..+..+...|..++..|+++
T Consensus       112 -~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A          112 -SQLVKADEMQ--RLRSQALDAFDGADYTAAITFLDKIL----------E-------VCVWDAELRELRAECFIKEGEPR  171 (359)
T ss_dssp             -HHHHHHHHHH--HHHHHHHHHHHTTCHHHHHHHHHHHH----------H-------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             -HHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHHHHH----------H-------hCCCchHHHHHHHHHHHHCCCHH
Confidence             1111110000  00000000000111112222221111          0       11123456888999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH------------HHHHH
Q 047433          441 EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW------------RRSQA  508 (614)
Q Consensus       441 eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy------------RRA~A  508 (614)
                      +|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|+   +..++.            .+|.+
T Consensus       172 ~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~  243 (359)
T 3ieg_A          172 KAISDLKAASKLKSDN-----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAEE  243 (359)
T ss_dssp             HHHHHHHHHHTTCSCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998     899999999999999999999999999999999   666543            55888


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHH---HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccch
Q 047433          509 YDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPY---YAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGI  585 (614)
Q Consensus       509 l~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~---y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~  585 (614)
                      +...|++++|+..|+++++..|++  +......-.   ......++..++...|..++...+..+.............+.
T Consensus       244 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          244 LIRDGRYTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            999999999999999999998852  221111100   111122333455667777777655544444444445556677


Q ss_pred             hhhHHHHHHHHHHhcccc
Q 047433          586 EEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       586 ~eQ~~dD~iral~~~~~~  603 (614)
                      .+++...+.+++...|+.
T Consensus       322 ~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            777777888888777764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=1.9e-12  Score=107.48  Aligned_cols=102  Identities=22%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.+++...|.+     ..++.++|.++..+|++++|+..++++++++|.   +..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~   74 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKG   74 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHH
Confidence            45688999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++.+|.++..+|++++|+..|+++++..|+
T Consensus        75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           75 YSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999885

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.43  E-value=1.4e-13  Score=146.13  Aligned_cols=149  Identities=10%  Similarity=-0.007  Sum_probs=116.1

Q ss_pred             Hhhhhhhh-ccCcHHHHHHHHHHHHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047433          374 LDYKLTEQ-KFKNKKVQKALEEIWELKVER-RKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALG  451 (614)
Q Consensus       374 ~dy~~~~~-~p~n~e~~~aL~el~~lkvEr-~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIe  451 (614)
                      ..|.+... .|.+..+...+..+.... .+ .+.+.  .....-+...+..+..|..+|..+...|+|++|+..|+++|+
T Consensus       118 ~~~~~al~l~P~~~~a~~~~g~~l~~~-g~d~~eAl--~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~  194 (382)
T 2h6f_A          118 KLTRDAIELNAANYTVWHFRRVLLKSL-QKDLHEEM--NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN  194 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHHHHc-ccCHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34444444 677777776666554432 11 22233  334444555566778899999999999999999999999999


Q ss_pred             hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-cCCHHHH-----HHHHHHH
Q 047433          452 VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM-KGLGRES-----LMDCIMF  525 (614)
Q Consensus       452 l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~-LG~yeEA-----L~df~kA  525 (614)
                      ++|.+     ..+|+|||.++..+|++++|+.+++++|+++|.   +..+|+.+|.++.. .|.+++|     +..|+++
T Consensus       195 ldP~~-----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~---~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A  266 (382)
T 2h6f_A          195 QDAKN-----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR---NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  266 (382)
T ss_dssp             HCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             hCccC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            99999     999999999999999999999999999999999   99999999999999 5555888     5889999


Q ss_pred             HHcCCCCC
Q 047433          526 INGCIRSE  533 (614)
Q Consensus       526 Lkl~P~~~  533 (614)
                      ++++|++.
T Consensus       267 l~l~P~~~  274 (382)
T 2h6f_A          267 IKLVPHNE  274 (382)
T ss_dssp             HHHSTTCH
T ss_pred             HHHCCCCH
Confidence            99988543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.42  E-value=2.1e-11  Score=119.09  Aligned_cols=250  Identities=10%  Similarity=-0.122  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhc-cCCCcCcHHHHHHHHHHh
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSL-LDRPKNLGEAITRALLLD  375 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~L-g~~~k~lGe~it~aLl~d  375 (614)
                      +|+..++++++..|+-.     ..+......+..+++.+.....+.+++...++..+.... +.-....|..+..++ ..
T Consensus        40 ~A~~~~~~~l~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~  113 (330)
T 3hym_B           40 MCYKLTSVVMEKDPFHA-----SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHAR-RY  113 (330)
T ss_dssp             HHHHHHHHHHHHCTTCT-----TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHH-HH
T ss_pred             HHHHHHHHHHHcCCCCh-----hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence            67777777777766543     233333344456677777777777776655544333200 000000000011111 12


Q ss_pred             hhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047433          376 YKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP  454 (614)
Q Consensus       376 y~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P  454 (614)
                      |..... .|.+..+...+..+.... .+.+...  ..-...+...+.....+...|..++..|++++|+..|+++++..|
T Consensus       114 ~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~--~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          114 LSKATTLEKTYGPAWIAYGHSFAVE-SEHDQAM--AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHH-TCHHHHH--HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHc-cCHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            222222 344444443333322211 0111111  111111111122334577799999999999999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---------CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          455 SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS---------NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       455 ~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd---------P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      .+     ..++.++|.++..+|++++|+..+++++++.         |.   +..+++.+|.++..+|++++|+..|+++
T Consensus       191 ~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a  262 (330)
T 3hym_B          191 ED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK---WEPLLNNLGHVCRKLKKYAEALDYHRQA  262 (330)
T ss_dssp             TC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT---CCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CC-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH---HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99     9999999999999999999999999999987         55   6789999999999999999999999999


Q ss_pred             HHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          526 INGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       526 Lkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      +++.|++...  ...+. ......++..++...|.+++...
T Consensus       263 ~~~~~~~~~~--~~~la-~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          263 LVLIPQNAST--YSAIG-YIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHSTTCSHH--HHHHH-HHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HhhCccchHH--HHHHH-HHHHHhccHHHHHHHHHHHHccC
Confidence            9998864332  22222 11222333345556666665544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.42  E-value=6.3e-13  Score=152.40  Aligned_cols=107  Identities=18%  Similarity=0.128  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..+..+.+.|+.+.+.|++++|+..|++||+++|++     +.+|.|+|.+|.++|++++|+..+++|++++|+   +.
T Consensus        40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---~~  111 (723)
T 4gyw_A           40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FA  111 (723)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH
Confidence            3456789999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+|+++|.+|..+|++++|+..|+++++++|++.+
T Consensus       112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  146 (723)
T 4gyw_A          112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD  146 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999999999999996443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.41  E-value=3.5e-12  Score=131.48  Aligned_cols=207  Identities=11%  Similarity=0.014  Sum_probs=112.9

Q ss_pred             HHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchh---hhhhccCCC
Q 047433          287 RILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLV---ELNSLLDRP  361 (614)
Q Consensus       287 ~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLs---eL~~Lg~~~  361 (614)
                      +..|+...|+  +|+..++++++..|+..     ..+..++.++..+++.+.+...+.++....++..   ...      
T Consensus        66 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------  134 (450)
T 2y4t_A           66 RATVFLAMGKSKAALPDLTKVIQLKMDFT-----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ------  134 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHH------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHH------
Confidence            3456667776  79999999999988876     7888899999999999999998888876555433   221      


Q ss_pred             cCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 047433          362 KNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEE  441 (614)
Q Consensus       362 k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdyee  441 (614)
                      ..++......  ..+.........+....++..+....          .       ..+..+..+...|..++..|++++
T Consensus       135 ~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~~~----------~-------~~~~~~~~~~~l~~~~~~~g~~~~  195 (450)
T 2y4t_A          135 SQLIKSDEMQ--RLRSQALNAFGSGDYTAAIAFLDKIL----------E-------VCVWDAELRELRAECFIKEGEPRK  195 (450)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHTCHHHHHHHHHHHH----------H-------HCTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHH----------H-------hCCCChHHHHHHHHHHHHCCCHHH
Confidence            0010000000  00000000000000011111111100          0       001122345555666666666666


Q ss_pred             HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH------------HHHH
Q 047433          442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR------------SQAY  509 (614)
Q Consensus       442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR------------A~Al  509 (614)
                      |+..|.++++..|.+     +.++.++|.+|..+|++++|+..++++++++|+   +...+...            |.++
T Consensus       196 A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~  267 (450)
T 2y4t_A          196 AISDLKAASKLKNDN-----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAEEL  267 (450)
T ss_dssp             GHHHHHHHHHHHCSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655     566666666666666666666666666666665   44444333            5666


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCC
Q 047433          510 DMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       510 ~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ...|++++|+..|+++++..|+
T Consensus       268 ~~~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          268 IRDGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCS
T ss_pred             HHcCCHHHHHHHHHHHHhcCCc
Confidence            6666666666666666666553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=6e-12  Score=123.01  Aligned_cols=225  Identities=9%  Similarity=0.021  Sum_probs=147.6

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhcc-ChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHH
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLK-DPDTRYKVIETAALFLIDLVELNSLLDRPKNLGE  366 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llk-d~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe  366 (614)
                      |+...|+  +|+..+.++++..|+-+     ..+..++.+....+ +.+.+...+.+++..-++.....      ..+|.
T Consensus        65 ~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~l~~  133 (330)
T 3hym_B           65 TLVELNKANELFYLSHKLVDLYPSNP-----VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW------IAYGH  133 (330)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTST-----HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH------HHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCcCCH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH------HHHHH
Confidence            3345555  67888888888776655     66777777777777 77777777777766555433332      11111


Q ss_pred             HHHH-----HHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433          367 AITR-----ALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE  440 (614)
Q Consensus       367 ~it~-----aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye  440 (614)
                      .+..     .....|..... .|.+......+..+.... .+.+...  ..-..-+...+..+..+...|..++..|+++
T Consensus       134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~--~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  210 (330)
T 3hym_B          134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT-NNSKLAE--RFFSQALSIAPEDPFVMHEVGVVAFQNGEWK  210 (330)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT-TCHHHHH--HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-hhHHHHH--HHHHHHHHhCCCChHHHHHHHHHHHHcccHH
Confidence            1110     00012222111 233333332232221110 0001110  0000111111224567889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCc----chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433          441 EAAMKYTEALGVCPSRPK----NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR  516 (614)
Q Consensus       441 eAI~~YtkAIel~P~~~~----~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye  516 (614)
                      +|+..|.+++++.|....    .....++.++|.+|..+|++++|+..++++++++|+   +..+++.+|.++..+|+++
T Consensus       211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~  287 (330)
T 3hym_B          211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFE  287 (330)
T ss_dssp             HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHhccHH
Confidence            999999999998733211    122789999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 047433          517 ESLMDCIMFINGCIR  531 (614)
Q Consensus       517 EAL~df~kALkl~P~  531 (614)
                      +|+..|++++++.|+
T Consensus       288 ~A~~~~~~al~~~p~  302 (330)
T 3hym_B          288 NAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999999885

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.40  E-value=2.9e-11  Score=118.04  Aligned_cols=222  Identities=10%  Similarity=0.024  Sum_probs=146.5

Q ss_pred             hhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHH
Q 047433          289 LCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGE  366 (614)
Q Consensus       289 ~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe  366 (614)
                      .++...|+  +|+..++++++..|+..     ..+..++.++...++.+.+...+.++....++.....      ..+|.
T Consensus        29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~la~   97 (327)
T 3cv0_A           29 LSMLKLANLAEAALAFEAVCQAAPERE-----EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH------AALAV   97 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH------HHHHH
Confidence            34444554  68888888888777654     5666777777788888888888877776655443332      11111


Q ss_pred             HHHH-----HHHHhhhhhhh-ccCcHHHHHHH--------------HH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 047433          367 AITR-----ALLLDYKLTEQ-KFKNKKVQKAL--------------EE--IWELKVERRKREKMMMMSEEKVEEMRVLVG  424 (614)
Q Consensus       367 ~it~-----aLl~dy~~~~~-~p~n~e~~~aL--------------~e--l~~lkvEr~erEk~~~ls~eel~~~~~~A~  424 (614)
                      .+..     .....|..... .|.+......+              ..  .....  +.+...  ..-.+-+...+..+.
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~--~~~~~~~~~~~~~~~  173 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN--EYRECR--TLLHAALEMNPNDAQ  173 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHH--HHHHHH--HHHHHHHHHSTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc--cHHHHH--HHHHHHHhhCCCCHH
Confidence            1100     00011111111 11111111110              00  00000  000000  000011111122456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|++++|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|.   +..+++.
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~  245 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDD-----AQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYN  245 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHH
Confidence            78889999999999999999999999999999     999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +|.++..+|++++|+..|+++++..|+..
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  274 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGT  274 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999999999998643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.39  E-value=3e-12  Score=109.06  Aligned_cols=102  Identities=25%  Similarity=0.261  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.++++..|.+     ..++.++|.+|..+|++++|+..++++++++|.   +..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~   86 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKG   86 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHH
Confidence            45689999999999999999999999999999998     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++.+|.++..+|++++|+..|+++++..|+
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999874

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.39  E-value=9.9e-12  Score=104.66  Aligned_cols=104  Identities=20%  Similarity=0.196  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..+..+...|..++..|+|++|+..|.+++...|.+     ..++.++|.++..+|++++|+..+.++++++|.   +.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~   80 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YS   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CH
Confidence            4467789999999999999999999999999999998     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .+++.+|.++..+|++++|+..|+++++..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999885

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.39  E-value=1.9e-11  Score=128.70  Aligned_cols=176  Identities=10%  Similarity=-0.075  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      ....+..+...|..++..|++++|+..|.++++++|.      ..++.++|.++..+|++++|+..++++++++|.   +
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~  309 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE---Y  309 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT---C
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---C
Confidence            3445677888999999999999999999999999885      578889999999999999999999999999999   8


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCc
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESY  578 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~  578 (614)
                      ..+++.+|.++..+|++++|+..|+++++..|++....  ..+. ......++..++...|.+++...+..+........
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY--IQLA-CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH--HHHH-HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999999999999999999999999988644322  1111 11122333445566777777766554444344444


Q ss_pred             CCcccchhhhHHHHHHHHHHhcccccCC
Q 047433          579 GENKSGIEEQRYCDMIRTMMEKKNLISG  606 (614)
Q Consensus       579 ~~~~~g~~eQ~~dD~iral~~~~~~~~g  606 (614)
                      .....+..+++...+.+++...|+...-
T Consensus       387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            4455667777788888888877765443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.37  E-value=1e-11  Score=104.88  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc---
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH---  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~---  498 (614)
                      .+..+...|..++..|+|++|+..|.++++..|.+     ..++.++|.+|..+|++++|+..++++++++|.   +   
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~   74 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE---NRED   74 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---STTC
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc---cchh
Confidence            56688999999999999999999999999999998     999999999999999999999999999999987   5   


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          499 ----CKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       499 ----~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                          ..+++++|.++..+|++++|+..|+++++..|
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                89999999999999999999999999999987

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=7.2e-12  Score=108.96  Aligned_cols=106  Identities=31%  Similarity=0.437  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|+++++++|++  .....++.++|.+|..+|+|++|+..++++++++|.   +..+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHHH
Confidence            45678999999999999999999999999999863  344789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++.+|.++..+|++++|+..|++++++.|++
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999998853

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=5.6e-12  Score=108.25  Aligned_cols=103  Identities=12%  Similarity=-0.023  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc---HHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH---CKS  501 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~---~KA  501 (614)
                      .+...|..++..|+|++|+..|.++++..|++  .....++.++|.+++++|+|++|+..++++++++|+   +   ..+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~   78 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG--VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGG   78 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHH
Confidence            46778999999999999999999999999986  222379999999999999999999999999999999   7   899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++.+|.++..+|++++|+..|+++++..|++
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999853

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=5.7e-13  Score=111.26  Aligned_cols=95  Identities=23%  Similarity=0.210  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc---
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH---  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~---  498 (614)
                      .+..+...|+.++..|+|++|+..|+++++++|.+     +.++.|+|.+|..+|+|++|+.+++++++++|+   +   
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST---AEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS---TTSH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ccHH
Confidence            45678999999999999999999999999999999     999999999999999999999999999999999   8   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433          499 ---CKSLWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       499 ---~KAyyRRA~Al~~LG~yeEAL~df~k  524 (614)
                         .++++++|.++..+|++++|+..+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence               89999999999999999888776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.34  E-value=1.1e-11  Score=120.50  Aligned_cols=112  Identities=13%  Similarity=0.035  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|+++++..|.+  .....++.++|.+|+++|+|++|+..++++++++|+.+....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45678889999999999999999999999998864  3446789999999999999999999999999998864446788


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          502 LWRRSQAYDM--------KGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       502 yyRRA~Al~~--------LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      ++.+|.++..        +|++++|+..|+++++..|++...
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  133 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV  133 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH
Confidence            9999999999        999999999999999998876543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=3.3e-11  Score=113.10  Aligned_cols=196  Identities=14%  Similarity=-0.002  Sum_probs=141.0

Q ss_pred             Hhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcH
Q 047433          288 ILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLG  365 (614)
Q Consensus       288 ~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lG  365 (614)
                      -.++...|+  +|+..+.++++..|+..     ..+..++.++...++.+.....+.++....++...+.          
T Consensus        30 a~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------   94 (243)
T 2q7f_A           30 MGRGSEFGDYEKAAEAFTKAIEENKEDA-----IPYINFANLLSSVNELERALAFYDKALELDSSAATAY----------   94 (243)
T ss_dssp             ------------CCTTHHHHHTTCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH----------
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH----------
Confidence            345555665  68888999999777665     6777788888888998888888887766544322221          


Q ss_pred             HHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 047433          366 EAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMK  445 (614)
Q Consensus       366 e~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~  445 (614)
                          ..+...|..   .....++...+.+.....                    +.....+...|..++..|++++|+..
T Consensus        95 ----~~la~~~~~---~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~  147 (243)
T 2q7f_A           95 ----YGAGNVYVV---KEMYKEAKDMFEKALRAG--------------------MENGDLFYMLGTVLVKLEQPKLALPY  147 (243)
T ss_dssp             ----HHHHHHHHH---TTCHHHHHHHHHHHHHHT--------------------CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             ----HHHHHHHHH---hccHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence                111111111   011112222222111111                    11234678899999999999999999


Q ss_pred             HHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          446 YTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       446 YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      |.++++..|.+     ..++.++|.++.+.|++++|+..++++++++|.   +..+++.+|.++..+|++++|+..|+++
T Consensus       148 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          148 LQRAVELNEND-----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHCTTC-----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHhCCcc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999998     999999999999999999999999999999999   9999999999999999999999999999


Q ss_pred             HHcCCCCC
Q 047433          526 INGCIRSE  533 (614)
Q Consensus       526 Lkl~P~~~  533 (614)
                      +++.|++.
T Consensus       220 ~~~~p~~~  227 (243)
T 2q7f_A          220 IDIQPDHM  227 (243)
T ss_dssp             HHHCTTCH
T ss_pred             HccCcchH
Confidence            99988543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=8.9e-12  Score=135.30  Aligned_cols=105  Identities=26%  Similarity=0.277  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.+++.|+|++|+..|++||+++|++     +.++.|+|.+|.++|+|++|+.++++|++++|+   +..+
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~   76 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKG   76 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHH
Confidence            56678889999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ++++|.+|..+|++++|+..|++++++.|++.+
T Consensus        77 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  109 (477)
T 1wao_1           77 YYRRAASNMALGKFRAALRDYETVVKVKPHDKD  109 (477)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999996554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.33  E-value=1.3e-11  Score=130.05  Aligned_cols=262  Identities=8%  Similarity=-0.087  Sum_probs=175.5

Q ss_pred             hhHHHHHHHHHhhcccccC--CCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHH
Q 047433          297 KNIAECKQVIENLCNLSRS--SDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLL  374 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srs--sd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~  374 (614)
                      +|+..++++++..|+-...  .--..+..++.+....++.+.+...+.++...-++ ....             . .+-.
T Consensus       220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~-------------~-~l~~  284 (537)
T 3fp2_A          220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSY-------------I-FLAL  284 (537)
T ss_dssp             HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH-------------H-HHHH
T ss_pred             HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHH-------------H-HHHH
Confidence            6777788888776663200  00134667777888888888888888887766444 2111             1 1111


Q ss_pred             hhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047433          375 DYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP  454 (614)
Q Consensus       375 dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P  454 (614)
                      .|..   .....++...+.+.....                    +..+..+...|..++..|+|++|+..|++++++.|
T Consensus       285 ~~~~---~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  341 (537)
T 3fp2_A          285 TLAD---KENSQEFFKFFQKAVDLN--------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP  341 (537)
T ss_dssp             HTCC---SSCCHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHH---hcCHHHHHHHHHHHhccC--------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence            1111   112222222222222111                    11344688899999999999999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          455 SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       455 ~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+     ..++.++|.++..+|++++|+..++++++++|.   +..+++.+|.++..+|++++|+..|+++++..|+..+
T Consensus       342 ~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          342 EN-----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             TC-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            98     889999999999999999999999999999999   9999999999999999999999999999999876544


Q ss_pred             hHhhcchHH---HHHHHH----------HHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcc
Q 047433          535 TSKRVKIPY---YAARMI----------SKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       535 ~~~k~kl~~---y~~r~i----------~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~  601 (614)
                      .......-.   ......          ++..++...|.+++...+..+.............|..+++...+.+++...|
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            321111000   111122          4445667778888777655444443444455566777788888888888777


Q ss_pred             ccc
Q 047433          602 NLI  604 (614)
Q Consensus       602 ~~~  604 (614)
                      +..
T Consensus       494 ~~~  496 (537)
T 3fp2_A          494 TMD  496 (537)
T ss_dssp             -CH
T ss_pred             CcH
Confidence            643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.33  E-value=2.2e-11  Score=116.52  Aligned_cols=104  Identities=16%  Similarity=0.063  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|++++|+..|.+++++.|.+     ..++.++|.+|..+|++++|+..++++++++|.   +..+
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~  113 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYA  113 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---ccHH
Confidence            56689999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.++..+|++++|+..|++++++.|++.
T Consensus       114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999988543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=2.1e-11  Score=121.94  Aligned_cols=170  Identities=14%  Similarity=0.009  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+...|..++..|+|++|+..|+++++.+|.+     ..++.++|.+|..+|++++|+..++++++++|+   +..+++
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~  136 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALM  136 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence            357789999999999999999999999999999     999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc--------------chHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV--------------KIPYYAARMISKHMNALWVFGGARSKILSS  569 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~--------------kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~  569 (614)
                      .+|.++..+|++++|+..|+++++..|+........              .+..+.  ..++..++...|.+++...+..
T Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~  214 (368)
T 1fch_A          137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDSLFLEVKELFLAAVRLDPTS  214 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH--HHHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcccHHHHHHHHHHHHHhCcCc
Confidence            999999999999999999999999998654322111              122121  3344445566677776665442


Q ss_pred             --CCCCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          570 --PVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       570 --~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                        +.............+..+++...+.+++...|+.
T Consensus       215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  250 (368)
T 1fch_A          215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND  250 (368)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence              2212222223334455555666666666665543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.31  E-value=7.1e-13  Score=120.69  Aligned_cols=97  Identities=7%  Similarity=-0.127  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      .|..+...|++++||..|.+++...|..     +..+.++|.+|+++|+|++|+..++++|+++|+   +..+|+.+|.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~-----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~   74 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQK-----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLL   74 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHH-----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence            4666777899999999999999999988     899999999999999999999999999999999   99999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          509 YDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       509 l~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      |..+|++++|+..|+++++++|++.
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           75 YELEENTDKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCchHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.31  E-value=7e-11  Score=110.02  Aligned_cols=100  Identities=16%  Similarity=0.052  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH---
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC---  499 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~---  499 (614)
                      +..+...|..++..|+|++|+..|.++++++|..     ..++.++|.+|..+|++++|+..+++++++.|.   +.   
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~  108 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG---NQLID  108 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT---CSEEE
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---ccHHH
Confidence            3445555555555555555555555555555555     555555555555555555555555555555555   33   


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          500 -------------KSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       500 -------------KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                                   .+++.+|.++..+|++++|+..|++++++.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence                         5555555555555555555555555555555

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.2e-11  Score=116.07  Aligned_cols=79  Identities=14%  Similarity=0.062  Sum_probs=73.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      ...|..++..|+|++|+..|+++|+++|++     +.++.++|.+|..+|++++|+..++++++++|+   +..+++.+|
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg  129 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLG  129 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHH
Confidence            449999999999999999999999999999     999999999999999999999999999999999   888888888


Q ss_pred             HHHHHcC
Q 047433          507 QAYDMKG  513 (614)
Q Consensus       507 ~Al~~LG  513 (614)
                      .+|+..|
T Consensus       130 ~~~~~~~  136 (208)
T 3urz_A          130 NYYYLTA  136 (208)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7775543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.1e-11  Score=116.92  Aligned_cols=175  Identities=9%  Similarity=-0.014  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP--KNERMVLYSNRAQCHLLLREPDAAISDATRALC----------  490 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~--~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe----------  490 (614)
                      +..+...|..++..|+|++|+..|.+++++.|...  ....+.++.++|.+|..+|++++|+..++++++          
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence            34455555566666666666666666666555431  112245566666666666666666666666666          


Q ss_pred             ----------------cCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHH
Q 047433          491 ----------------LSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMN  554 (614)
Q Consensus       491 ----------------LdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqme  554 (614)
                                      ++|.   +..+++.+|.++..+|++++|+..|+++++..|++  +.....+. ......++..+
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~-~~~~~~~~~~~  191 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPE---KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRA-AALAKLMSFPE  191 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HHHHHTTCHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--HHHHHHHH-HHHHHhCCHHH
Confidence                            3444   55566666666666666666666666666665532  11111111 11111222233


Q ss_pred             HHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          555 ALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       555 a~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      +...|..++...+..+.............+..+++...+.+++...|.+
T Consensus       192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  240 (258)
T 3uq3_A          192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV  240 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence            4445555555443333222223333344555555666666666655433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=1.6e-11  Score=117.89  Aligned_cols=96  Identities=13%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRA-QCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA-~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .+...|..++..|+|++|+..|.++++++|.+     ..++.++| .+|. .+++++|+..++++++++|+   +..+++
T Consensus       110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~---~~~~~~  180 (272)
T 3u4t_A          110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-----PKVFYELGQAYYY-NKEYVKADSSFVKVLELKPN---IYIGYL  180 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-----HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTT---CHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcc---chHHHH
Confidence            45666666666666666666666666666666     66666666 3333 33666666666666666666   666666


Q ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHcC
Q 047433          504 RRSQAYDMKGL---GRESLMDCIMFINGC  529 (614)
Q Consensus       504 RRA~Al~~LG~---yeEAL~df~kALkl~  529 (614)
                      .+|.++..+|+   +++|+..|++++++.
T Consensus       181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          181 WRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            66666666666   666666666666664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=7e-11  Score=119.15  Aligned_cols=227  Identities=15%  Similarity=-0.016  Sum_probs=145.1

Q ss_pred             hhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHH-----HHHHhhhhhhh-ccCcHHHHHHHH
Q 047433          320 QYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITR-----ALLLDYKLTEQ-KFKNKKVQKALE  393 (614)
Q Consensus       320 ~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~-----aLl~dy~~~~~-~p~n~e~~~aL~  393 (614)
                      .+...+..+...++.+.+...+.+++...++.....      ..+|..+..     .....|..... .|.+..+...+.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAW------QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            356677788888999999999999888777655544      222222211     11123333222 456666655555


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCcchh
Q 047433          394 EIWELKVERRKREKMMMMSEEKVEEMRVL----------VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS--RPKNER  461 (614)
Q Consensus       394 el~~lkvEr~erEk~~~ls~eel~~~~~~----------A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~--~~~~~~  461 (614)
                      .+.... .+.+...  ..-..-+...+..          +..+...|..+...|++++|+..|.+++++.|.  +     
T Consensus       141 ~~~~~~-g~~~~A~--~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----  212 (365)
T 4eqf_A          141 VSYTNT-SHQQDAC--EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-----  212 (365)
T ss_dssp             HHHHHT-TCHHHHH--HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC-----
T ss_pred             HHHHcc-ccHHHHH--HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-----
Confidence            433211 0111111  1111111111111          222334588999999999999999999999998  7     


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      +.++.++|.+|..+|++++|+..++++++++|+   +..+|+.+|.++..+|++++|+..|++++++.|++  +.....+
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l  287 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSRYNL  287 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHH
Confidence            899999999999999999999999999999999   99999999999999999999999999999998854  3322222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          542 PYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       542 ~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      . .+....++..++...|.+++...
T Consensus       288 ~-~~~~~~g~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          288 G-ISCINLGAYREAVSNFLTALSLQ  311 (365)
T ss_dssp             H-HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             H-HHHHHCCCHHHHHHHHHHHHHhC
Confidence            2 12222333445667777777665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.2e-11  Score=128.76  Aligned_cols=57  Identities=14%  Similarity=-0.001  Sum_probs=46.3

Q ss_pred             HHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHh
Q 047433          287 RILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFL  348 (614)
Q Consensus       287 ~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aL  348 (614)
                      +..|+...|+  +|+..+.++|+..|+..     ..+..++.++..+++.+.+...+.++...-
T Consensus        45 la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           45 LSACYVSVGDLKKVVEMSTKALELKPDYS-----KVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccChHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4567777777  79999999999988766     778888899999999999888888775543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=2.5e-11  Score=111.99  Aligned_cols=102  Identities=11%  Similarity=-0.033  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--cCCCCCcc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL-REPDAAISDATRALC--LSNPPNSH  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL-GdyeeAI~D~~~ALe--LdP~~~~~  498 (614)
                      .+..+...|..++..|++++|+..|.++++..|.+     ..++.++|.++..+ |++++|+..++++++  .+|.   .
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~  112 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-----AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT---P  112 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC---H
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc---h
Confidence            45566777777777888888888888888877777     77777888888888 888888888888877  4455   6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..+++.+|.++..+|++++|+..|+++++..|+
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            777777888888888888888888888877764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.29  E-value=1.6e-11  Score=109.35  Aligned_cols=171  Identities=9%  Similarity=-0.060  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|+++++..|.+     ..++.++|.++...|++++|+..++++++++|.   +..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~   79 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----VDVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVA   79 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHH
Confidence            4456667777777777777777777777777776     777777777777777777777777777777777   77777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK  582 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~  582 (614)
                      +.+|.++...|++++|+..|+++++..|++  +.....+. ......++..++...|.+++...+..+............
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLG-VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHH-HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            777777777777777777777777776642  22111111 111112222334445555555443322222222222334


Q ss_pred             cchhhhHHHHHHHHHHhccccc
Q 047433          583 SGIEEQRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       583 ~g~~eQ~~dD~iral~~~~~~~  604 (614)
                      .+..+++...+.+++...|+..
T Consensus       157 ~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          157 MGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCHHHHHHHHHHHHHcCCCch
Confidence            4555666666666776666544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=4e-11  Score=111.67  Aligned_cols=101  Identities=11%  Similarity=-0.036  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.++..|+|++|+..|++++  .| +     +.++.++|.+|..+|++++|+..++++++++|.   +..+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~   73 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H-----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVA   73 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHH
Confidence            44578899999999999999999999996  34 4     789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.++..+|++++|+..|++++++.|++.
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999999998755

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.29  E-value=6.3e-11  Score=127.00  Aligned_cols=173  Identities=12%  Similarity=-0.071  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ...+...|..+.+.|++++|+..|+++++..|.+     ...+.+++.+|.+.|++++|+..++++++++|.   +..+|
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~  478 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLL  478 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHH
Confidence            4468888999999999999999999999999988     889999999999999999999999999999999   89999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCC--hHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIR---SET--TSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQES  577 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~---~~D--~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~  577 (614)
                      ..+|.++...|++++|+..|+++++..|+   .++  ......+. ......++..++...|.+++...+..+.....-.
T Consensus       479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  557 (597)
T 2xpi_A          479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG-HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA  557 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999998542   112  11111111 1122233344566677777766644443333444


Q ss_pred             cCCcccchhhhHHHHHHHHHHhccccc
Q 047433          578 YGENKSGIEEQRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       578 ~~~~~~g~~eQ~~dD~iral~~~~~~~  604 (614)
                      ......|..+++.+.+.+++..+|+..
T Consensus       558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          558 LVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            455567777888888888888887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.28  E-value=3.9e-11  Score=113.71  Aligned_cols=100  Identities=9%  Similarity=-0.039  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH----
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC----  499 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~----  499 (614)
                      ..+...|..++..|+|++|+..|.++++++|.+     ..++.++|.+|..+|++++|+..++++++++|+   +.    
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  114 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-----ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEK  114 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHH
Confidence            356679999999999999999999999999998     999999999999999999999999999999999   77    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          500 ---KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       500 ---KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                         .+|+.+|.++..+|++++|+..|++++++.|+
T Consensus       115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence               77999999999999999999999999999884

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=4.4e-10  Score=106.83  Aligned_cols=194  Identities=8%  Similarity=-0.080  Sum_probs=141.2

Q ss_pred             hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHH
Q 047433          290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEA  367 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~  367 (614)
                      ++...|+  +|+..++++++..++..     ..+..++.++...++.+.+...+.++....++...+.            
T Consensus        46 ~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------  108 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLRKALEIDPSSA-----DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL------------  108 (252)
T ss_dssp             HHHHTTCTGGGHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH------------
Confidence            4445554  78888899988877655     6777788888888888888888887766544322211            


Q ss_pred             HHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          368 ITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYT  447 (614)
Q Consensus       368 it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~Yt  447 (614)
                        ..+...|..      .+...+++..+....    +  .  ...+       ..+..+...|..++..|++++|+..|.
T Consensus       109 --~~la~~~~~------~g~~~~A~~~~~~~~----~--~--~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~  165 (252)
T 2ho1_A          109 --NNYGGFLYE------QKRYEEAYQRLLEAS----Q--D--TLYP-------ERSRVFENLGLVSLQMKKPAQAKEYFE  165 (252)
T ss_dssp             --HHHHHHHHH------TTCHHHHHHHHHHHT----T--C--TTCT-------THHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --HHHHHHHHH------HhHHHHHHHHHHHHH----h--C--ccCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence              111111111      001111122111111    0  0  0111       134577888999999999999999999


Q ss_pred             HHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          448 EALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       448 kAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      ++++..|.+     ..++.++|.++..+|++++|+..++++++++|.   +..+++.++.++..+|++++|...++++++
T Consensus       166 ~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          166 KSLRLNRNQ-----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHCSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999999998     899999999999999999999999999999999   899999999999999999999999999999


Q ss_pred             cCCC
Q 047433          528 GCIR  531 (614)
Q Consensus       528 l~P~  531 (614)
                      ..|+
T Consensus       238 ~~p~  241 (252)
T 2ho1_A          238 LYPG  241 (252)
T ss_dssp             HCTT
T ss_pred             HCCC
Confidence            9885

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.28  E-value=4.5e-11  Score=112.19  Aligned_cols=170  Identities=12%  Similarity=-0.050  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|.++++..|..     ..++.++|.++..+|++++|+..++++++++|.   +..++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  128 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSA-----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---NGDLF  128 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---SHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHH
Confidence            3456666777777777777777777777777766     677777777777777777777777777777777   67777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK  582 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~  582 (614)
                      +.+|.++..+|++++|+..|+++++..|++  +.....+. ......++..++...|.+++...+..+............
T Consensus       129 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          129 YMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFG-MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            777777777777777777777777776632  22111111 011111222233444555554443322222222222334


Q ss_pred             cchhhhHHHHHHHHHHhcccc
Q 047433          583 SGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       583 ~g~~eQ~~dD~iral~~~~~~  603 (614)
                      .+..+++...+.+++...|+.
T Consensus       206 ~~~~~~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          206 KENREKALEMLDKAIDIQPDH  226 (243)
T ss_dssp             TTCTTHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHccCcch
Confidence            455566666666677766654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=1.1e-10  Score=97.47  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|.++++..|.+     ..++.++|.++...|++++|+..++++++++|.   +..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHH
Confidence            5578889999999999999999999999999998     899999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +.+|.++..+|++++|+..|+++++..|+
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999884

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.5e-10  Score=120.65  Aligned_cols=173  Identities=12%  Similarity=-0.041  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..+..+...|..++..|++++|+..|+++++..|.      ..++.++|.+|..+|++++|+..++++++++|.   +.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~  304 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NS  304 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CT
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CH
Confidence            556778899999999999999999999999999885      788999999999999999999999999999999   89


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYG  579 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~  579 (614)
                      .+++.+|.++..+|++++|+..|+++++..|++....  ..+. ......++..++...|..++...+..+.........
T Consensus       305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  381 (514)
T 2gw1_A          305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY--IQLA-CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI  381 (514)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH--HHHH-HHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH--HHHH-HHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            9999999999999999999999999999988643321  1111 111112233445566777766654444333333334


Q ss_pred             CcccchhhhHHHHHHHHHHhccccc
Q 047433          580 ENKSGIEEQRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       580 ~~~~g~~eQ~~dD~iral~~~~~~~  604 (614)
                      ....+..+++...+.+++...|+..
T Consensus       382 ~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          382 LTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccc
Confidence            4455666677777777777776653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.27  E-value=3.4e-11  Score=99.17  Aligned_cols=102  Identities=10%  Similarity=0.005  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|+|++|+..|.+++++.|.+     ..++.++|.++..+|++++|+..++++++++|. ..+..+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~   81 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAA   81 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHH
Confidence            56778999999999999999999999999998     999999999999999999999999999999986 235789999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHcCCCC
Q 047433          505 RSQAYDMK-GLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       505 RA~Al~~L-G~yeEAL~df~kALkl~P~~  532 (614)
                      +|.++..+ |++++|+..++++++..|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999999998854

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.27  E-value=1.3e-11  Score=133.21  Aligned_cols=171  Identities=11%  Similarity=-0.022  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          422 LVGLIKQEAKHLFWLGEI-EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~Gdy-eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      .+..+...|..++..|+| ++|+..|+++++++|.+     +.+|.++|.+|.++|++++|+..++++++++|+   . .
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~-~  171 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---K-V  171 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---H-H
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---H-H
Confidence            456788999999999999 99999999999999998     899999999999999999999999999999988   4 8


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHH--------HHHHHHHHHHhhhh
Q 047433          501 SLWRRSQAYDMK---------GLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMI--------SKHMNALWVFGGAR  563 (614)
Q Consensus       501 AyyRRA~Al~~L---------G~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i--------~Kqmea~~lF~~Ai  563 (614)
                      +++.+|.++..+         |++++|+..|++++++.|++.+  ....+. .+....        ++..++...|.+++
T Consensus       172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg-~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWYILG-NAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHH-HHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            999999999999         9999999999999999885433  222222 111122        44456667788887


Q ss_pred             hcCC---CCCCCCccCCcCCcccchhhhHHHHHHHHHHhccccc
Q 047433          564 SKIL---SSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       564 ~k~~---~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~  604 (614)
                      ..++   ..+....+........+..+++...+.+++..+|++.
T Consensus       249 ~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            7664   3333333444445556777778888888888877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.27  E-value=1e-10  Score=126.09  Aligned_cols=169  Identities=14%  Similarity=-0.040  Sum_probs=127.4

Q ss_pred             chhhhhhHHHHhccCh-hHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHH
Q 047433          319 WQYMGIDCLLFLLKDP-DTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWE  397 (614)
Q Consensus       319 w~y~~idcll~Llkd~-~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~  397 (614)
                      ..+..++.++..+++. +.+...+.+++..-++..+..      ..+|..+...  .+            ..+++..+..
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~~--g~------------~~~A~~~~~~  162 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW------NQLGEVYWKK--GD------------VTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHH--TC------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHc--CC------------HHHHHHHHHH
Confidence            6677777777778887 777777777776655544333      1222211110  01            1111221111


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 047433          398 LKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWL---------GEIEEAAMKYTEALGVCPSRPKNERMVLYSNR  468 (614)
Q Consensus       398 lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~---------GdyeeAI~~YtkAIel~P~~~~~~~a~lysNR  468 (614)
                              ..  .+.+.        +..+...|..++..         |+|++|+..|.++++++|++     ..+|.++
T Consensus       163 --------al--~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l  219 (474)
T 4abn_A          163 --------AL--THCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-----GRSWYIL  219 (474)
T ss_dssp             --------HH--TTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHH
T ss_pred             --------HH--hhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHH
Confidence                    11  22211        24677888888888         99999999999999999999     9999999


Q ss_pred             HHHHHHc--------CCcHHHHHHHHHHHhcCC---CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          469 AQCHLLL--------REPDAAISDATRALCLSN---PPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       469 A~~ylkL--------GdyeeAI~D~~~ALeLdP---~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      |.+|..+        |++++|+..+++|++++|   .   +..+|+.+|.+|..+|++++|+..|++++++.|++.
T Consensus       220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS---NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999        999999999999999999   8   999999999999999999999999999999998643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.25  E-value=5e-11  Score=114.48  Aligned_cols=179  Identities=9%  Similarity=-0.023  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|+++++..|.+  .....++.++|.+|+++|+|++|+..++++++++|+......++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            4568889999999999999999999999999864  23357899999999999999999999999999999932223589


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCChHh-hcchHHHHH-------------HHHH
Q 047433          503 WRRSQAYDM------------------KGLGRESLMDCIMFINGCIRSETTSK-RVKIPYYAA-------------RMIS  550 (614)
Q Consensus       503 yRRA~Al~~------------------LG~yeEAL~df~kALkl~P~~~D~~~-k~kl~~y~~-------------r~i~  550 (614)
                      +.+|.++..                  +|++++|+..|+++++..|++..... ...+.....             ...+
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999987                  57999999999999999998765321 111110000             0111


Q ss_pred             HHHHHHHHHhhhhhcCCCCCC---CCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          551 KHMNALWVFGGARSKILSSPV---NNVQESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       551 Kqmea~~lF~~Ai~k~~~~~~---~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      +-.++...|.+++...+..+.   ............|..+++.+.+.+.....|+.
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            123444556666655543321   11122233345556666666655555555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.25  E-value=6e-12  Score=108.78  Aligned_cols=90  Identities=13%  Similarity=-0.048  Sum_probs=81.6

Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433          435 WLGEIEEAAMKYTEALGV---CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel---~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~  511 (614)
                      ..|+|++|+..|.++|++   +|.+     ..++.++|.+|..+|+|++|+..++++++++|+   +..+++.+|.++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL-----AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYN   73 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHH
Confidence            368999999999999999   5776     899999999999999999999999999999999   99999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC
Q 047433          512 KGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       512 LG~yeEAL~df~kALkl~P~~  532 (614)
                      +|++++|+..|+++++..|++
T Consensus        74 ~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCC
T ss_pred             cCCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999998853

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.24  E-value=1.1e-10  Score=106.46  Aligned_cols=105  Identities=11%  Similarity=0.052  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHhcCCCCCcc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQC-HLLLREP--DAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~-ylkLGdy--eeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+..+...|..++..|+|++|+..|.++++++|.+     ..++.++|.+ +...|++  ++|+..++++++++|.   +
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~  114 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---E  114 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---C
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---c
Confidence            34578899999999999999999999999999999     9999999999 8899999  9999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ..+++.+|.++..+|++++|+..|++++++.|++.+
T Consensus       115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999996543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.24  E-value=4.7e-11  Score=114.58  Aligned_cols=100  Identities=9%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      +...|..++..|+|++|+..|.++++ .|.+ ......+|.++|.+|..+|++++|+..++++++++|.   +..+++.+
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l  114 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNA-TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQI  114 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHH
Confidence            44444444444444444444444444 2221 2222334444455555555555555555555554444   44444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |.++..+|++++|+..|+++++..|
T Consensus       115 ~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A          115 GSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             HHHHHHccCHHHHHHHHHHHhhcCC
Confidence            5555555555555555544444444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.23  E-value=1.2e-11  Score=117.55  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=84.5

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREP----------DAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdy----------eeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      +.+.|++|+..|.++++++|++     +.+|.|+|.++..++++          ++||..+++||+++|+   +..+||+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~-----aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~   85 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence            4567999999999999999999     99999999999999876          5999999999999999   9999999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHcCCCC
Q 047433          505 RSQAYDMKG-----------LGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       505 RA~Al~~LG-----------~yeEAL~df~kALkl~P~~  532 (614)
                      +|.+|..+|           ++++|+..|++|++++|++
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            999999985           8999999999999999964

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=6.5e-11  Score=133.73  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|++||+++|++     ..++.|+|.+|.++|+|++ +..|++|++++|+   +..+|
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---~~~a~  537 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---VISAA  537 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---hHHHH
Confidence            4467788888888888888888888888888888     8888888888888888888 8888888888888   88888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +++|.++..+|++++|+.+|+++++++|++
T Consensus       538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          538 FGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence            888888888888888888888888888753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.22  E-value=6e-10  Score=119.40  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ..+...|..+++.|++++|+..|.+++++.|..  .+.....+|.+++.+|.+.|++++|+..++++++++|+   +..+
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~  552 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN---DANV  552 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---CHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHH
Confidence            345555555555555555555555555553210  01112455555555555555555555555555555555   5555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      |+.+|.+|...|++++|+..|++++++.|
T Consensus       553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          553 HTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            55555555555555555555555555555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.21  E-value=1.4e-10  Score=106.94  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          422 LVGLIKQEAKHLFWL-GEIEEAAMKYTEALG--VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~-GdyeeAI~~YtkAIe--l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+..+...|..++.. |++++|+..|.++++  ..|..     ..++.++|.++..+|++++|+..++++++++|.   +
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~  146 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-----YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---F  146 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Confidence            456677788888888 888888888888888  44444     778888888888888888888888888888888   8


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..+++.+|.++..+|++++|+..|+++++..|
T Consensus       147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888888888888888888888888888877

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.20  E-value=1.9e-10  Score=112.17  Aligned_cols=103  Identities=13%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+...|..++..|+|++|+..|+++++.+|.+     ..++.++|.++..+|++++|+..++++++++|.   +..+++
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~   93 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHA   93 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHHHH
Confidence            357788999999999999999999999999998     999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .+|.++..+|++++|+..|+++++..|+...
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  124 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ  124 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence            9999999999999999999999999886544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.20  E-value=2.1e-10  Score=109.05  Aligned_cols=98  Identities=10%  Similarity=-0.148  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCCCCccHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC--LSNPPNSHCKSL  502 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe--LdP~~~~~~KAy  502 (614)
                      .+...|..++..|++++|+..|.++++..|.+     ..++.++|.+|..+|++++|+..++++++  .+|.   +..++
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~  144 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRN-----ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE---RSRVF  144 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT---HHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc---cHHHH
Confidence            45555566666666666666666666666655     56666666666666666666666666666  5555   55666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      +.+|.++..+|++++|+..|+++++..|
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~  172 (252)
T 2ho1_A          145 ENLGLVSLQMKKPAQAKEYFEKSLRLNR  172 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            6666666666666666666666666655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.20  E-value=5e-10  Score=99.52  Aligned_cols=101  Identities=14%  Similarity=-0.045  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+...|..++..|++++|+..|.++++..|.+     ..++.++|.++..+|++++|+..+.++++++|.   +..+++
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~  148 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKVHR  148 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHHHH
Confidence            356667777777777777777777777777777     777777777777777777777777777777777   777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .+|.++..+|++++|+..++++++..|++
T Consensus       149 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          149 AIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            77777777777777777777777776643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=5.4e-10  Score=108.52  Aligned_cols=110  Identities=11%  Similarity=0.008  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHhcCCC
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL--------LREPDAAISDATRALCLSNP  494 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk--------LGdyeeAI~D~~~ALeLdP~  494 (614)
                      +..+...|..++..|+|++|+..|+++|++.|++  .....++.++|.+++.        +|++++|+..++++++++|+
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            5578999999999999999999999999999864  3447889999999999        99999999999999999999


Q ss_pred             CCccHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          495 PNSHCKSL--------------WRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       495 ~~~~~KAy--------------yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ......++              +.+|.+|..+|++++|+..|+++++..|++..
T Consensus       130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence            32223343              99999999999999999999999999996543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.17  E-value=6.8e-11  Score=104.99  Aligned_cols=109  Identities=10%  Similarity=-0.056  Sum_probs=82.6

Q ss_pred             HHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          448 EALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       448 kAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      +...++|+.     +..+.|+|.+|++.|+|++|+..+++||+++|.   +..+|+.+|.+|..+|++++|+.+|+++++
T Consensus         4 r~a~inP~~-----a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A            4 RLAYINPEL-----AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             ---CCCHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            445678877     999999999999999999999999999999999   999999999999999999999999999999


Q ss_pred             cCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433          528 GCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       528 l~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~  567 (614)
                      ++|++....  ..+. .+....++..++...|.+++..++
T Consensus        76 ~~p~~~~a~--~~lg-~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           76 LDSKFIKGY--IRKA-ACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HCTTCHHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhhhhHHH--HHHH-HHHHHCCCHHHHHHHHHHHHHHCc
Confidence            988543322  1111 111222333344555555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=2.6e-10  Score=124.22  Aligned_cols=99  Identities=10%  Similarity=-0.044  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      ..+...|..++..|+|++|+..|+++++++|++     ..++.++|.+|..+|++++|+..++++++++|+   +..+++
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~   95 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGIAL   95 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence            345555555555566666666666666655555     555556666666666666666666666666555   555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .+|.+|..+|++++|+..|++++++.|
T Consensus        96 ~la~~~~~~g~~~~A~~~~~~al~~~p  122 (568)
T 2vsy_A           96 WLGHALEDAGQAEAAAAAYTRAHQLLP  122 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            566666666666666666666665555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=6.4e-10  Score=93.19  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+...|..++..|++++|+..|.++++..|.+     ...+.++|.++...|++++|+..+++++.++|.   +..+++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~   74 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYN   74 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHH
Confidence            46678888999999999999999999999988     889999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +|.++...|++++|+..++++++..|+
T Consensus        75 l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           75 LGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999998774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=4.3e-11  Score=135.17  Aligned_cols=136  Identities=16%  Similarity=0.040  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|+++++++|++     ..+|+++|.+|+.+|+|++|+.++++|++++|+   +..+
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~  503 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---ELAP  503 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CSHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHH
Confidence            45578899999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSS  569 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~  569 (614)
                      |+.+|.++..+|++++ +..|+++++++|++...  ...+. .+....++..++...|.+++..++..
T Consensus       504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a--~~~lg-~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVISA--AFGLA-RARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH--HHHHH-HHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH--HHHHH-HHHHHcCCHHHHHHHHHhhcccCccc
Confidence            9999999999999999 99999999999964332  22222 11222333445666777776665443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.16  E-value=2e-10  Score=98.12  Aligned_cols=88  Identities=10%  Similarity=-0.022  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433          440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL  519 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL  519 (614)
                      ++|+..|.++++.+|++     +.++.++|.+|..+|++++|+..++++++++|.   +..+|+.+|.++..+|++++|+
T Consensus         2 ~~a~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN-----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHH
Confidence            36899999999999999     999999999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCh
Q 047433          520 MDCIMFINGCIRSETT  535 (614)
Q Consensus       520 ~df~kALkl~P~~~D~  535 (614)
                      ..|++++++.|+..+.
T Consensus        74 ~~~~~al~~~~~~~~~   89 (115)
T 2kat_A           74 QAWESGLAAAQSRGDQ   89 (115)
T ss_dssp             HHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhccccccH
Confidence            9999999998754443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=3.6e-10  Score=117.68  Aligned_cols=213  Identities=11%  Similarity=0.037  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhh
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY  376 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy  376 (614)
                      +|+..++++++..|+..     +.+..++.++...++.+.+...+.++....|+...+.      .++|...........
T Consensus       231 ~a~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~lg~~y~~~~~~~~  299 (472)
T 4g1t_A          231 EGEKLVEEALEKAPGVT-----DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH------CQIGCCYRAKVFQVM  299 (472)
T ss_dssp             HHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccHH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHHHHHhh
Confidence            57777888888777766     6777788888888888888888888887777766655      444444333222111


Q ss_pred             hhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433          377 KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR  456 (614)
Q Consensus       377 ~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~  456 (614)
                      ...  .................. +-.++.         ....+..+..+...|..+...|+|++|+..|+++|++.|..
T Consensus       300 ~~~--~~~~~~~~~~~~~~~~A~-~~~~~a---------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          300 NLR--ENGMYGKRKLLELIGHAV-AHLKKA---------DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HC--------CHHHHHHHHHHHH-HHHHHH---------HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             hHH--HHHHHHHHHHHhhHHHHH-HHHHHH---------hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            000  000000000000000000 000000         11112233457788999999999999999999999998864


Q ss_pred             CcchhHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhcCCCC---------------------CccHHHHHHHHHHHHHcCC
Q 047433          457 PKNERMVLYSNRAQC-HLLLREPDAAISDATRALCLSNPP---------------------NSHCKSLWRRSQAYDMKGL  514 (614)
Q Consensus       457 ~~~~~a~lysNRA~~-ylkLGdyeeAI~D~~~ALeLdP~~---------------------~~~~KAyyRRA~Al~~LG~  514 (614)
                        .....++.+.+.. +..+|++++|+..+.+||+++|..                     +.++.+|+.+|.+|..+|+
T Consensus       368 --~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~  445 (472)
T 4g1t_A          368 --VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK  445 (472)
T ss_dssp             --HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence              2334556677654 567899999999999999886541                     1156789999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 047433          515 GRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       515 yeEAL~df~kALkl~P~~~D  534 (614)
                      +++|+..|++++++.|..++
T Consensus       446 ~~~A~~~y~kALe~~~~~p~  465 (472)
T 4g1t_A          446 MQQADEDSERGLESGSLIPS  465 (472)
T ss_dssp             CC------------------
T ss_pred             HHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999775444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.15  E-value=1.9e-09  Score=108.82  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433          434 FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       434 Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG  513 (614)
                      ...|++++|+..|+++++..|++     +.+++++|.++.++|++++|+..++++++++|+   ++.+++++|.++..+|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---HPETLINLVVLSQHLG  248 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTT
T ss_pred             hCchHHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcC
Confidence            35689999999999999999999     999999999999999999999999999999999   9999999999999999


Q ss_pred             CHHHH-HHHHHHHHHcCCCC
Q 047433          514 LGRES-LMDCIMFINGCIRS  532 (614)
Q Consensus       514 ~yeEA-L~df~kALkl~P~~  532 (614)
                      +++++ ...+++++++.|++
T Consensus       249 ~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          249 KPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             CCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            99875 67889999999953

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.15  E-value=3e-09  Score=106.89  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---  496 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---  496 (614)
                      ..+..+...|..++..|+|++|+..|.+++++.|... ....+.++.++|.+|..+|++++|+..+++++++.|..+   
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            3566788999999999999999999999999876542 344566999999999999999999999999999877610   


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ....+++.+|.++..+|++++|+..|++++++.+...+
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  302 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND  302 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            11789999999999999999999999999999765544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.14  E-value=3.3e-09  Score=110.43  Aligned_cols=302  Identities=11%  Similarity=-0.009  Sum_probs=166.6

Q ss_pred             hhhcccch--hhHHHHHHHHHhhcccccCCCc----chhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCC--
Q 047433          289 LCYSKTGR--KNIAECKQVIENLCNLSRSSDD----WQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDR--  360 (614)
Q Consensus       289 ~~~~~~~~--~aia~~~~~i~~lc~~srssd~----w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~--  360 (614)
                      .++...|+  +|+..++++++......-...+    ..|..++.+...+++-+.+...++++......+........-  
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~  138 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL  138 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence            34566786  7999999999876544321111    345567788888999999988888887765543321100000  


Q ss_pred             CcCcHHHHH-------HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHH
Q 047433          361 PKNLGEAIT-------RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMS--EEKVEEMRVLVGLIKQEA  430 (614)
Q Consensus       361 ~k~lGe~it-------~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls--~eel~~~~~~A~~lK~~G  430 (614)
                      ..+.|....       ......|++... .|++.++...+..+........+.++  ++.  ...+...+..+..+...|
T Consensus       139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~--al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN--AIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC--THHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH--HHHHHHHHhhcCCcchHHHHHHH
Confidence            001111111       011133443333 56666655544433211100000000  000  000111122233455555


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433          431 KHLFW----LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS  506 (614)
Q Consensus       431 N~lFk----~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA  506 (614)
                      ..+..    .|++++|+..|.+++.+.|..     ..++.++|.+|...|++++|+..+++|++++|+   +..+++.+|
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg  288 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGV-----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN---NAYLHCQIG  288 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---hHHHHHHHH
Confidence            55443    456778888888888888887     888888888888888888888888888888888   888888888


Q ss_pred             HHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433          507 QAYDMK-------------------GLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       507 ~Al~~L-------------------G~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~  567 (614)
                      .+|...                   +.+++|+..|++++++.|..........   ......++.-++...|.+++...+
T Consensus       289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg---~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA---SLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH---HHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH---HHHHHhccHHHHHHHHHHHHhcCC
Confidence            877543                   3467788888888888775544321111   111223333455666777766543


Q ss_pred             CCCCCC---cc-CCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433          568 SSPVNN---VQ-ESYGENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       568 ~~~~~~---~~-e~~~~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ++....   .. ........+..++++..+.+++..+|+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            321110   00 0112234555667777778888877765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.13  E-value=9.7e-10  Score=92.08  Aligned_cols=101  Identities=19%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ...+...|..++..|++++|+..|.+++...|..     ..++.++|.++...|++++|+..++++++++|.   +..++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  106 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAW  106 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHH
Confidence            3457778999999999999999999999999998     899999999999999999999999999999999   89999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +.+|.++...|++++|+..|+++++..|+
T Consensus       107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          107 YNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=1.6e-09  Score=108.39  Aligned_cols=113  Identities=7%  Similarity=-0.226  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc--
Q 047433          422 LVGLIKQEAKHLFWL-GEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS--  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~-GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~--  497 (614)
                      .+..+...|..+... |++++|+..|++|+++.|... ......++.|+|.+|.++|+|++|+..++++++++|..+.  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            466788999999996 999999999999999988542 2233578999999999999999999999999999987321  


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          498 --HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       498 --~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                        ...+|+++|.++..+|++++|+..|++++++.|+..+
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence              1237899999999999999999999999999986554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.12  E-value=6.2e-11  Score=109.94  Aligned_cols=114  Identities=7%  Similarity=-0.163  Sum_probs=95.7

Q ss_pred             HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI  523 (614)
Q Consensus       444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~  523 (614)
                      ..|.++++++|++     +.+++++|.+++++|+|++|+..++++++++|.   +..+|+.+|.++..+|+|++|+..|+
T Consensus        23 ~~l~~al~l~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           23 ATLKDINAIPDDM-----MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             CCTGGGCCSCHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHhCCCHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            5578899999998     999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          524 MFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       524 kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      ++++++|++.+..  ..+. .+....++..++...|.+++...+.
T Consensus        95 ~al~l~P~~~~~~--~~lg-~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           95 VAFALGKNDYTPV--FHTG-QCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHSSSCCHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHhhCCCCcHHH--HHHH-HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999755443  2222 2233345556677788888776643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=2.1e-10  Score=105.82  Aligned_cols=109  Identities=11%  Similarity=-0.007  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCCCCCc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHL-LLREPDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~yl-kLGdyeeAI~D~~~ALeLdP~~~~  497 (614)
                      .+..+..+...|..+...|++++|+..|.+++...| +     +.++..++.+.+ ..++..+|+..++++++++|+   
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~---  106 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-----NSYKSLIAKLELHQQAAESPELKRLEQELAANPD---  106 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT---
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-----hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC---
Confidence            445566677777777777777777777777777777 5     444444443322 333444567777888888888   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      +..+++.+|.++..+|++++|+..|+++++..|+..++.
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  145 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE  145 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence            888999999999999999999999999999888655433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=5.3e-10  Score=112.22  Aligned_cols=105  Identities=11%  Similarity=0.012  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH--------------------
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS--------------------  483 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~--------------------  483 (614)
                      ..+...|..+...|++++|+..|+++++.+|++     ..++.++|.+++.+|++++|+.                    
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            356667777777777777777777777777777     7777777777777777766654                    


Q ss_pred             --------------HHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          484 --------------DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       484 --------------D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                                    .++++++++|+   +..+++.+|.++...|++++|+..|+++++..|++.+..
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~  256 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ  256 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence                          45555666777   777777777777777777777777777777777554443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.10  E-value=9.1e-10  Score=113.49  Aligned_cols=163  Identities=12%  Similarity=-0.027  Sum_probs=130.0

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhh
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY  376 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy  376 (614)
                      +|+..++.+++..++.+     ..+..++.++...++.+.+...+.+++...++...+.                     
T Consensus       131 ~A~~~~~~a~~~~p~~a-----~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------------------  184 (336)
T 1p5q_A          131 KAKESWEMNSEEKLEQS-----TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------------  184 (336)
T ss_dssp             CCCCGGGCCHHHHHHHH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------------
T ss_pred             cccchhcCCHHHHHHHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC---------------------
Confidence            46666777777777777     6777778888888888888777777766654422110                     


Q ss_pred             hhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433          377 KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR  456 (614)
Q Consensus       377 ~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~  456 (614)
                              ....    .                       ......+..+.+.|..+++.|+|++|+..|+++|+++|.+
T Consensus       185 --------~~~~----~-----------------------~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  229 (336)
T 1p5q_A          185 --------NEEA----Q-----------------------KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN  229 (336)
T ss_dssp             --------SHHH----H-----------------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             --------hHHH----H-----------------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence                    0000    0                       0011235578899999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHc
Q 047433          457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES-LMDCIMFING  528 (614)
Q Consensus       457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA-L~df~kALkl  528 (614)
                           +.+|+++|.+|..+|+|++|+.++++|++++|+   +..+++.+|.++..+|++++| ...|++++..
T Consensus       230 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          230 -----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 999999999999999999999999999999999   999999999999999999999 4467777655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.10  E-value=1.6e-10  Score=125.94  Aligned_cols=159  Identities=11%  Similarity=0.009  Sum_probs=107.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG  515 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y  515 (614)
                      .|++++|+..|+++++.+|.+     ..++.++|.+|..+|++++|+..++++++++|+   +..+++.+|.+|..+|++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~   73 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD-----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRH   73 (568)
T ss_dssp             -------------------CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCH
T ss_pred             CccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence            478999999999999999999     999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCccc---chhhhHHHH
Q 047433          516 RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKS---GIEEQRYCD  592 (614)
Q Consensus       516 eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~---g~~eQ~~dD  592 (614)
                      ++|+..|++++++.|++.  .....+. ......++..++...|.+++...+..+....+........   +..+++.+.
T Consensus        74 ~~A~~~~~~al~~~p~~~--~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~  150 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHP--GIALWLG-HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ  150 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCH--HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCH--HHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            999999999999998543  2222222 1222233445566777777777655443333333333444   777888888


Q ss_pred             HHHHHHhcccccC
Q 047433          593 MIRTMMEKKNLIS  605 (614)
Q Consensus       593 ~iral~~~~~~~~  605 (614)
                      +.+++..+|+..+
T Consensus       151 ~~~al~~~p~~~~  163 (568)
T 2vsy_A          151 VRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHHTCCCSC
T ss_pred             HHHHHhcCCcccC
Confidence            8889988887643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=6.6e-09  Score=100.50  Aligned_cols=213  Identities=15%  Similarity=0.081  Sum_probs=144.1

Q ss_pred             hhcccch--hhHHHHHHHHHh--------hcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccC
Q 047433          290 CYSKTGR--KNIAECKQVIEN--------LCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLD  359 (614)
Q Consensus       290 ~~~~~~~--~aia~~~~~i~~--------lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~  359 (614)
                      ++...|+  +|+..++++++.        .+..+     ..+..++.++...++.+.+...+.+++........    ++
T Consensus        36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~  106 (311)
T 3nf1_A           36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA-----TMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----KD  106 (311)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----TT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----CC
Confidence            4556666  799999999985        44444     67788889999999999998888888766422100    11


Q ss_pred             CCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 047433          360 RPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI  439 (614)
Q Consensus       360 ~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdy  439 (614)
                      . ........ .+-..|..   .....++...+.+...+.    +...  .-      .....+..+...|..++..|++
T Consensus       107 ~-~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~a~~~~----~~~~--~~------~~~~~~~~~~~la~~~~~~~~~  169 (311)
T 3nf1_A          107 H-PAVAATLN-NLAVLYGK---RGKYKEAEPLCKRALEIR----EKVL--GK------DHPDVAKQLNNLALLCQNQGKY  169 (311)
T ss_dssp             C-HHHHHHHH-HHHHHHHT---TTCHHHHHHHHHHHHHHH----HHHH--CT------TCHHHHHHHHHHHHHHHTTTCH
T ss_pred             C-hHHHHHHH-HHHHHHHH---cCcHHHHHHHHHHHHHHH----HHhc--CC------CChHHHHHHHHHHHHHHHcCCH
Confidence            1 11111111 11112211   111222333333322221    1110  00      0123566788999999999999


Q ss_pred             HHHHHHHHHHHhhCCC---CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-------------------------
Q 047433          440 EEAAMKYTEALGVCPS---RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-------------------------  491 (614)
Q Consensus       440 eeAI~~YtkAIel~P~---~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-------------------------  491 (614)
                      ++|+..|.+++++...   ........++.++|.+|..+|++++|+..+++++++                         
T Consensus       170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
T 3nf1_A          170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE  249 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence            9999999999998110   012233889999999999999999999999999985                         


Q ss_pred             ------------------------CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          492 ------------------------SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       492 ------------------------dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                                              +|.   ...+++.+|.+|..+|++++|+..|++++++.|+
T Consensus       250 ~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          250 CKGKQKDGTSFGEYGGWYKACKVDSPT---VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             C-------CCSCCCC---------CHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hcCchhhHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                                    355   7889999999999999999999999999999763

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.06  E-value=9.4e-09  Score=99.26  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---C
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---N  496 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~  496 (614)
                      ..+..+...|..++..|++++|+..|.+++++.+.. .......++.++|.++..+|++++|+..+++++++.+..   .
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence            356678899999999999999999999999987653 133456699999999999999999999999999887651   0


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ....+++.+|.++..+|++++|+..|++++++.+...+
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence            12778999999999999999999999999998664333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.05  E-value=2.8e-10  Score=94.25  Aligned_cols=92  Identities=17%  Similarity=0.044  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMV-LYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~-lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      ..+|..++..|+|++|+..|+++++.+|.+     .. ++.++|.+|..+|++++|+..++++++++|+   +..++++ 
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~-   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG-----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD---SPALQAR-   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH-
Confidence            467899999999999999999999999998     88 9999999999999999999999999999999   8888754 


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                             +.+.+++..|+++++.+|+...
T Consensus        75 -------~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 -------KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             -------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             -------HHHHHHHHHHHHHhccCccccc
Confidence                   6778889999998888875443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.05  E-value=2.4e-09  Score=86.05  Aligned_cols=84  Identities=19%  Similarity=0.164  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.+++++.|.+     ..++.++|.++.++|++++|+..++++++++|.   +..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~   79 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHH
Confidence            45678889999999999999999999999999998     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcC
Q 047433          502 LWRRSQAYDMKG  513 (614)
Q Consensus       502 yyRRA~Al~~LG  513 (614)
                      ++.+|.++..+|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.05  E-value=2.3e-10  Score=104.15  Aligned_cols=115  Identities=7%  Similarity=-0.160  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433          443 AMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC  522 (614)
Q Consensus       443 I~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df  522 (614)
                      -..|.+++.++|.+     ...+.++|.+++..|+|++|+..+++++.++|.   +..+|+.+|.++..+|++++|+..|
T Consensus         7 ~~~~~~al~~~p~~-----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~   78 (148)
T 2vgx_A            7 GGTIAMLNEISSDT-----LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSY   78 (148)
T ss_dssp             CCSHHHHTTCCHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHcCCHhh-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34688999999998     999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          523 IMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       523 ~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      ++++++.|++....  ..+. .+....++.-++...|..++...+.
T Consensus        79 ~~al~l~p~~~~~~--~~lg-~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           79 SYGAVMDIXEPRFP--FHAA-ECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHSTTCTHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCchHH--HHHH-HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            99999999654432  2222 2222344445666777877776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.05  E-value=7.5e-09  Score=105.49  Aligned_cols=114  Identities=13%  Similarity=0.094  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---  496 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---  496 (614)
                      ..+..+...|..++..|+|++|+..|.+++++.|.. .......++.++|.+|..+|++++|+..+++++++.|...   
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  300 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE  300 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            355678899999999999999999999999988753 2234456899999999999999999999999999887510   


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ....+++.+|.++..+|++++|+..|++++++.+...+
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence            13688999999999999999999999999998664433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.04  E-value=3e-10  Score=103.61  Aligned_cols=129  Identities=8%  Similarity=-0.047  Sum_probs=99.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      .++.++..|+|++|+..|.++++.+|.+     ..++.++|.+|+.+|++++|+..++++++++|.   +..+++.+|.+
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~   87 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATV   87 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence            4455678899999999999999999999     999999999999999999999999999999999   99999999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          509 -YDMKGLG--RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       509 -l~~LG~y--eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                       +...|++  ++|+..|+++++..|++.  .....+. ......++..++...|.+++...+.
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSNEI--TALMLLA-SDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTTCH--HHHHHHH-HHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCCcH--HHHHHHH-HHHHHcccHHHHHHHHHHHHhhCCC
Confidence             8899999  999999999999988533  2221111 1111223334555667777665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.03  E-value=2.3e-09  Score=102.83  Aligned_cols=106  Identities=8%  Similarity=0.022  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH------------------cCCcHHHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL------------------LREPDAAISD  484 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk------------------LGdyeeAI~D  484 (614)
                      ...+...|..+++.|+|++|+..|+++++..|++  .....++.++|.++..                  +|++++|+..
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            3478889999999999999999999999999986  2334588999999987                  5799999999


Q ss_pred             HHHHHhcCCCCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          485 ATRALCLSNPPNSHCKSL-----------------WRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       485 ~~~ALeLdP~~~~~~KAy-----------------yRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++++++.+|+   +..+.                 +.+|.+|...|++++|+..|+++++..|+++
T Consensus       119 ~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          119 FSKLVRGYPN---SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHTTCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHCcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            9999999999   54332                 6789999999999999999999999999643

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.99  E-value=1.8e-09  Score=110.71  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cC-CC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALC-----LS-NP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-----Ld-P~  494 (614)
                      .+..+...|..+...|+|++|+..|.+|+++.|.. .....+.++.|+|.+|..+|++++|+..+++|++     .+ |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            45678899999999999999999999999987653 2345667999999999999999999999999999     46 66


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                         ...+++.+|.++..+|++++|+..|++++++.+...++
T Consensus       263 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  300 (383)
T 3ulq_A          263 ---LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV  300 (383)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence               88999999999999999999999999999997644443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=2.9e-09  Score=106.53  Aligned_cols=146  Identities=11%  Similarity=-0.060  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCCCc--
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLL-REPDAAISDATRALCLSNPPNS--  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkL-GdyeeAI~D~~~ALeLdP~~~~--  497 (614)
                      .+..+.+.|+.+...|+|++|+..|++||++.|... ....+.++.|+|.+|... |++++|+..+++|+++.|..+.  
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            466889999999999999999999999999987532 223467899999999995 9999999999999999886211  


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh-----cchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          498 -HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR-----VKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       498 -~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k-----~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                       ...++.++|.++..+|++++|+..|++++++.|+.......     ..+. .+....++..++...|.+++..++.
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG-LCQLAATDAVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH-HHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence             15689999999999999999999999999999876543111     0111 1111223344566677777765543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.98  E-value=2.1e-08  Score=95.04  Aligned_cols=206  Identities=15%  Similarity=0.046  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHhhcccccCC---CcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHH
Q 047433          297 KNIAECKQVIENLCNLSRSS---DDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL  373 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srss---d~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl  373 (614)
                      +|+..++++++.+-.+....   .-..+..++.++...++.+.+...+.+++......     .+++......... .+-
T Consensus        19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~-~l~   92 (283)
T 3edt_B           19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT-----LGKDHPAVAATLN-NLA   92 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCTTCHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-----cCCcchHHHHHHH-HHH
Confidence            68888888888664443111   12567778888888999998888888876654211     0111011111111 111


Q ss_pred             HhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 047433          374 LDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV-  452 (614)
Q Consensus       374 ~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel-  452 (614)
                      ..|..   .-.-.++...+.+.....    +...  .-      ..+..+..+...|..++..|++++|+..|.+++++ 
T Consensus        93 ~~~~~---~g~~~~A~~~~~~al~~~----~~~~--~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B           93 VLYGK---RGKYKEAEPLCKRALEIR----EKVL--GK------FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHHHT---TTCHHHHHHHHHHHHHHH----HHHH--CT------TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH---hccHHHHHHHHHHHHHHH----HHHc--CC------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            11211   111222222223222221    1110  00      01235668999999999999999999999999998 


Q ss_pred             -------CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC--------------------------------
Q 047433          453 -------CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSN--------------------------------  493 (614)
Q Consensus       453 -------~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP--------------------------------  493 (614)
                             .|..     ..++.++|.+|..+|++++|+..+++++++.|                                
T Consensus       158 ~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T 3edt_B          158 ATRLGPDDPNV-----AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA  232 (283)
T ss_dssp             HHHSCTTCHHH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--
T ss_pred             HHhcCCCCHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH
Confidence                   4444     88999999999999999999999999998621                                


Q ss_pred             --------------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          494 --------------PPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       494 --------------~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                                    ..+....+++.+|.+|..+|++++|+..|+++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                          11126778999999999999999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=1.9e-08  Score=100.93  Aligned_cols=88  Identities=10%  Similarity=-0.188  Sum_probs=48.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CC-CCCccHHHHHHHHHHHHH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL---SN-PPNSHCKSLWRRSQAYDM  511 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL---dP-~~~~~~KAyyRRA~Al~~  511 (614)
                      .|++++|+..|+++|+.+|++     +.+|.+++..+.++|++++|+..++++++.   +| .   ....|...+..+..
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~---~~~l~~~~~~~~~~  253 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDI-----PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK---SGEIWARFLAFESN  253 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG---CHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHHHH
Confidence            455555555555555555555     555555555555555555555555555553   22 2   34445555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCC
Q 047433          512 KGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       512 LG~yeEAL~df~kALkl~P~  531 (614)
                      .|++++|...++++++..|+
T Consensus       254 ~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          254 IGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSCHHHHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHHHccc
Confidence            55555555555555555553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.98  E-value=1.8e-09  Score=103.10  Aligned_cols=128  Identities=11%  Similarity=-0.136  Sum_probs=99.8

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433          434 FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       434 Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG  513 (614)
                      ...|+|++|+..|+++++..|.. +...+.++.++|.++..+|++++|+..++++++++|.   +..+++.+|.++..+|
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALT-DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTT
T ss_pred             CccchHHHHHHHHHHHHhccccc-CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcc
Confidence            34578999999999999986532 3345899999999999999999999999999999999   9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          514 LGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      ++++|+..|++++++.|++....  ..+. ......++..++...|.+++...+.
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~--~~la-~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAH--LNRG-IALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHhcCccccHHH--HHHH-HHHHHhccHHHHHHHHHHHHHhCCC
Confidence            99999999999999998644322  2221 1111223334455666666665533

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.96  E-value=2.1e-08  Score=96.79  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      .+..+...|..++..|++++|+..|.+++++.|.. .......++.++|.+|..+|++++|+..+++++++.+..   ..
T Consensus       222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  301 (338)
T 3ro2_A          222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  301 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence            46688999999999999999999999999987653 234557899999999999999999999999999986641   11


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ...+++.+|.++..+|++++|+..|++++++.+.
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=2.6e-08  Score=100.02  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      .+..+...|..++..|++++|+..|.+++++.|.. .......++.++|.+|..+|++++|+..+++++++.+..   ..
T Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  305 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG  305 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence            46688999999999999999999999999987653 234457899999999999999999999999999986541   11


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ...++..+|.++..+|++++|+..|++++++.+...+
T Consensus       306 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  342 (406)
T 3sf4_A          306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD  342 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            3779999999999999999999999999999664443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.95  E-value=7.7e-09  Score=91.36  Aligned_cols=99  Identities=10%  Similarity=-0.044  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|.++++++|.+     ..++.++|.++..+|++++|+..+.++++++|.   +..++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~  118 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-----IKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDAK  118 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHH
Confidence            4578889999999999999999999999999999     999999999999999999999999999999999   88777


Q ss_pred             --HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          503 --WRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       503 --yRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                        +.++..+...|++++|+..+.++..+.
T Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          119 MKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence              455555888999999999999887764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.95  E-value=6.9e-09  Score=89.67  Aligned_cols=113  Identities=13%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      .+..+...|..++..|+|++|+..|.+++++.+.. .......++.++|.+|..+|++++|+..+++++++.+..   ..
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            56788999999999999999999999999987642 234556799999999999999999999999999886541   11


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ...+++.+|.++..+|++++|+..+++++++.+...+
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  124 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  124 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence            2678999999999999999999999999998654433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.94  E-value=5.9e-09  Score=112.15  Aligned_cols=162  Identities=14%  Similarity=0.006  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhh
Q 047433          297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY  376 (614)
Q Consensus       297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy  376 (614)
                      +|+..++.+++..++.+     ..+...+..+...++.+.+...+.+++...++...+                      
T Consensus       252 ~A~~~~~~~~~~~~~~a-----~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~----------------------  304 (457)
T 1kt0_A          252 KAKESWEMDTKEKLEQA-----AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL----------------------  304 (457)
T ss_dssp             CCCCGGGSCHHHHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------------------
T ss_pred             cCcchhhcCHHHHHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC----------------------
Confidence            46666667777777777     777777888888888887777777776655432110                      


Q ss_pred             hhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433          377 KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR  456 (614)
Q Consensus       377 ~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~  456 (614)
                              ..+..   .   .                    .....+..+.+.|..+++.|+|++|+..|+++|+++|++
T Consensus       305 --------~~~~~---~---~--------------------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  350 (457)
T 1kt0_A          305 --------SEKES---K---A--------------------SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN  350 (457)
T ss_dssp             --------CHHHH---H---H--------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             --------ChHHH---H---H--------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence                    00000   0   0                    011234578899999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 047433          457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD-CIMFIN  527 (614)
Q Consensus       457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~d-f~kALk  527 (614)
                           +.+|++||.+|+.+|+|++|+.++++|++++|+   +..++..++.++..+|++++|.+. |++++.
T Consensus       351 -----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          351 -----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---NKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 999999999999999999999999999999999   999999999999999999988764 444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.94  E-value=3.4e-09  Score=106.45  Aligned_cols=225  Identities=8%  Similarity=-0.085  Sum_probs=144.1

Q ss_pred             HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHH------HHH-------HHHHhhcCCHHHHH-HHHHHHHHHHHHHHHHH
Q 047433          370 RALLLDYKLTEQ-KFKNKKVQKALEEIWELKV------ERR-------KREKMMMMSEEKVE-EMRVLVGLIKQEAKHLF  434 (614)
Q Consensus       370 ~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkv------Er~-------erEk~~~ls~eel~-~~~~~A~~lK~~GN~lF  434 (614)
                      +.....|+.... .|.+.++.-.+..+.....      .+.       +...  ..-...+. ..+..+..|...|..+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~--~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA--NIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH--HHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH--HHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            344467777666 7888888777666543110      000       1111  11111122 12334567888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-c
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMV-LYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM-K  512 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~-lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~-L  512 (614)
                      ..|++++|+..|+++|++.|.+     .. +|.+++.++.+.|++++|+..+++|++++|.   +..+|...+..... +
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC---CTHHHHHHHHHHHHTS
T ss_pred             hcCCHHHHHHHHHHHHhccccC-----ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHc
Confidence            9999999999999999998887     65 8999999999999999999999999999998   77787766655443 7


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc----cCCcCCcccchhhh
Q 047433          513 GLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNV----QESYGENKSGIEEQ  588 (614)
Q Consensus       513 G~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~----~e~~~~~~~g~~eQ  588 (614)
                      |++++|...|+++++..|++  +.....+..+ ....++..++...|.+++....-+|....    .-..-....|..++
T Consensus       183 ~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~  259 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKYGDI--PEYVLAYIDY-LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  259 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC--HHHHHHHHHH-HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999998853  3322222111 11123345667788888775321111111    11222344566667


Q ss_pred             HHHHHHHHHHhcccccCCc
Q 047433          589 RYCDMIRTMMEKKNLISGK  607 (614)
Q Consensus       589 ~~dD~iral~~~~~~~~g~  607 (614)
                      ......|++...|+...+.
T Consensus       260 a~~~~~~a~~~~p~~~~~~  278 (308)
T 2ond_A          260 ILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             HHHHHHHHHHHTTTTTSSC
T ss_pred             HHHHHHHHHHHcccccccc
Confidence            7777788888888755443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.93  E-value=2.5e-09  Score=90.56  Aligned_cols=76  Identities=12%  Similarity=0.001  Sum_probs=68.4

Q ss_pred             hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          452 VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       452 l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      .+|++     +.++.++|.+|+.+|+|++|+..++++++++|+   +..+|+.+|.+|..+|++++|+..|++++++.|+
T Consensus         2 ~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPED-----PFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            36777     999999999999999999999999999999999   9999999999999999999999999999999775


Q ss_pred             CCCh
Q 047433          532 SETT  535 (614)
Q Consensus       532 ~~D~  535 (614)
                      ..+.
T Consensus        74 ~~~~   77 (100)
T 3ma5_A           74 EGTQ   77 (100)
T ss_dssp             HSCH
T ss_pred             CCch
Confidence            4443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.93  E-value=1.3e-09  Score=97.23  Aligned_cols=113  Identities=11%  Similarity=-0.089  Sum_probs=89.1

Q ss_pred             HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433          444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI  523 (614)
Q Consensus       444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~  523 (614)
                      ..|.++++++|.+     ...+.++|.+++..|+|++|+..+++++.++|.   +..+|+.+|.++..+|++++|+..|+
T Consensus         5 ~~l~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~   76 (142)
T 2xcb_A            5 GTLAMLRGLSEDT-----LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYS   76 (142)
T ss_dssp             ----CCTTCCHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHcCCHHH-----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4678888999988     999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433          524 MFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       524 kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~  567 (614)
                      ++++++|++....  ..+. .+....++.-++...|..++...+
T Consensus        77 ~al~~~p~~~~~~--~~lg-~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           77 YGALMDINEPRFP--FHAA-ECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHCTTCTHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcHHH--HHHH-HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999654332  2222 122223344456667777776654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.92  E-value=3.8e-09  Score=93.47  Aligned_cols=71  Identities=8%  Similarity=0.017  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +.+.++.|+|.++++.|+|++|+..|++||+++|+   +..+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            45789999999999999999999999999999999   999999999999999999999999999999987543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=4.6e-08  Score=98.46  Aligned_cols=112  Identities=8%  Similarity=-0.062  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc---
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS---  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~---  497 (614)
                      .+..+.+.|..+.. |+|++|+..|++|+++.|... ......++.|+|.+|.++|+|++|+..+++++++.|..+.   
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            46678899999988 999999999999999987532 2345689999999999999999999999999998765211   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      ...+++.+|.++..+|++++|+..|++++ +.|...+.
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence            13588999999999999999999999999 98865543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.89  E-value=4.8e-08  Score=99.51  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      .+..+...|..++..|++++|+..|.+++++.|.. .......++.++|.+|..+|++++|+..+++++++.+..   ..
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  341 (411)
T 4a1s_A          262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG  341 (411)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence            45678899999999999999999999999988753 233457899999999999999999999999999986541   11


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ...+++.+|.+|..+|++++|+..|++++++.+
T Consensus       342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            356999999999999999999999999999975

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.87  E-value=1.1e-08  Score=103.37  Aligned_cols=164  Identities=10%  Similarity=-0.052  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..+...|++++|+..|.+     |.+     ..++.+++.+|.++|++++|+..++++++++|+   +.. 
T Consensus       100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~-  165 (291)
T 3mkr_A          100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-----LECMAMTVQILLKLDRLDLARKELKKMQDQDED---ATL-  165 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---cHH-
Confidence            456677788888888888888888877     666     778888888888888888888888888888887   543 


Q ss_pred             HHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCC
Q 047433          502 LWRRSQAYD----MKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQES  577 (614)
Q Consensus       502 yyRRA~Al~----~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~  577 (614)
                       .+.+.++.    ..|++++|+..|+++++..|+  ++.....+. ......++.-++...|.+++..++..+....+..
T Consensus       166 -~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--~~~~~~~la-~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          166 -TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--TLLLLNGQA-ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             -HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--CHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--cHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             33333332    337888888888888888774  333222222 1222344445666777777777766555544444


Q ss_pred             cCCcccchhhhHH-HHHHHHHHhcccc
Q 047433          578 YGENKSGIEEQRY-CDMIRTMMEKKNL  603 (614)
Q Consensus       578 ~~~~~~g~~eQ~~-dD~iral~~~~~~  603 (614)
                      ......|...++. ....+++..+|+.
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            4444455554443 3444566666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=3.5e-08  Score=81.87  Aligned_cols=71  Identities=7%  Similarity=-0.060  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      +..+.++|.+++..|+|++|+..++++++++|.   +..+++++|.++..+|++++|+..|++++++.|++.+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   74 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence            678999999999999999999999999999999   99999999999999999999999999999999976443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.85  E-value=2.8e-08  Score=94.16  Aligned_cols=105  Identities=13%  Similarity=-0.016  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC-----PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----  491 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~-----P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----  491 (614)
                      ..+..+...|..++..|++++|+..|.+++++.     |+  ......++.++|.+|..+|++++|+..+++++++    
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            356689999999999999999999999999983     21  1233899999999999999999999999999999    


Q ss_pred             ----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          492 ----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       492 ----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                          +|.   ...+++.+|.++..+|++++|+..|++++++.|
T Consensus       161 ~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          161 LGPDDPN---VAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             SCTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                676   889999999999999999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.84  E-value=1.2e-08  Score=113.79  Aligned_cols=166  Identities=14%  Similarity=0.042  Sum_probs=110.2

Q ss_pred             HHHHHHHcCCH-HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCc
Q 047433          429 EAKHLFWLGEI-EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE----------PDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       429 ~GN~lFk~Gdy-eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd----------yeeAI~D~~~ALeLdP~~~~  497 (614)
                      ...+..+.|+| ++|+..|+++|.++|++     ..+|++|+.++.++|+          +++|+..++++++.+|+   
T Consensus        34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~-----~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---  105 (567)
T 1dce_A           34 AVFQKRQAGELDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---  105 (567)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---
Confidence            33344556665 57788899999999988     8889999999888888          88899999999999998   


Q ss_pred             cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHH-HHHHHHHHHhhhhhcCCCCCCCCc
Q 047433          498 HCKSLWRRSQAYDMKG--LGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMIS-KHMNALWVFGGARSKILSSPVNNV  574 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG--~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~-Kqmea~~lF~~Ai~k~~~~~~~~~  574 (614)
                      +..+|+.|+.++..+|  +++++++.+.++++.+|++..+-...  . ++...++ ...++...+.+++..++.......
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R--~-~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR--R-FVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH--H-HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHH--H-HHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            8899999999998888  66899999999999877432221111  1 1111111 112233344556655544321111


Q ss_pred             cCCc--------------CCcccchhhhHHHHHHHHHHhcccccC
Q 047433          575 QESY--------------GENKSGIEEQRYCDMIRTMMEKKNLIS  605 (614)
Q Consensus       575 ~e~~--------------~~~~~g~~eQ~~dD~iral~~~~~~~~  605 (614)
                      +...              +....+.-+++++.+.++|..+|+..+
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence            1000              011235567889999999999998765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.84  E-value=1.6e-08  Score=84.73  Aligned_cols=85  Identities=15%  Similarity=-0.009  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|+   +..++
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~  117 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETYK  117 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHHH
Confidence            4578899999999999999999999999999998     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCH
Q 047433          503 WRRSQAYDMKGLG  515 (614)
Q Consensus       503 yRRA~Al~~LG~y  515 (614)
                      +.+|.++..+|++
T Consensus       118 ~~l~~~~~~~~~~  130 (131)
T 2vyi_A          118 SNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999986

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.79  E-value=3.3e-08  Score=90.91  Aligned_cols=81  Identities=10%  Similarity=-0.035  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHHcCCHHH
Q 047433          440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH--CKSLWRRSQAYDMKGLGRE  517 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~--~KAyyRRA~Al~~LG~yeE  517 (614)
                      .+|+..|.++++++|++     ..++.++|.++..+|++++|+..++++++++|+   +  ..+++.+|.++..+|++++
T Consensus        91 ~~a~~~~~~al~~~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           91 SPELKRLEQELAANPDN-----FELACELAVQYNQVGRDEEALELLWNILKVNLG---AQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             CHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---TTTTHHHHHHHHHHHHHCSSCH
T ss_pred             chHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---cChHHHHHHHHHHHHHhCCCCc
Confidence            35799999999999999     999999999999999999999999999999997   5  5699999999999999999


Q ss_pred             HHHHHHHHHHc
Q 047433          518 SLMDCIMFING  528 (614)
Q Consensus       518 AL~df~kALkl  528 (614)
                      |+..|++++..
T Consensus       163 A~~~y~~al~~  173 (176)
T 2r5s_A          163 IASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=4.5e-08  Score=98.13  Aligned_cols=95  Identities=8%  Similarity=-0.066  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc--HHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH--CKSLW  503 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~--~KAyy  503 (614)
                      ....+..+...+++++|+..|.++++.+|++     ..++.++|.+|...|++++|+..+.++++++|+   +  ..++.
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~-----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~---~~~~~a~~  259 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAENPED-----AALATQLALQLHQVGRNEEALELLFGHLRXDLT---AADGQTRX  259 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---GGGGHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcCCcc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---cccchHHH
Confidence            4445566667788899999999999999999     999999999999999999999999999999999   8  89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +++.++..+|+.++|+..|++++..
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.78  E-value=1e-08  Score=102.63  Aligned_cols=137  Identities=17%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS----  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~----  497 (614)
                      .+..+...|..++..|+|++|+..|+++++++|++     ..+++++|.+|..+|++++|+..++++++++|+.+.    
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  111 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD  111 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH
Confidence            45578899999999999999999999999999999     999999999999999999999999999999986310    


Q ss_pred             cHHHHHHHHHH----------------------HHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHH
Q 047433          498 HCKSLWRRSQA----------------------YDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNA  555 (614)
Q Consensus       498 ~~KAyyRRA~A----------------------l~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea  555 (614)
                      ......+++..                      ....|++++|++.+++++++.|+  +......+.....+..++..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~a  189 (281)
T 2c2l_A          112 DIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED--DGHIRAQQACIEAKHDKYMADM  189 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSC--HHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhhhhhHHHHHHHHHHHHHHHH
Confidence            11122222211                      12368999999999999999883  2222333332222222333445


Q ss_pred             HHHHhhhhhc
Q 047433          556 LWVFGGARSK  565 (614)
Q Consensus       556 ~~lF~~Ai~k  565 (614)
                      ...|..+...
T Consensus       190 ~~~f~~a~~~  199 (281)
T 2c2l_A          190 DELFSQVDEK  199 (281)
T ss_dssp             HHHHHHSSCT
T ss_pred             HHHHHhhhcc
Confidence            6677776554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.78  E-value=2.9e-08  Score=89.69  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +..+..+.+.|..+++.|+|++|+..|+++|+++|.+     +.+|.++|.+|..+|+|++|+.+++++++++|+   +.
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~  131 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN-----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA---AA  131 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---GH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC---CH
Confidence            3466789999999999999999999999999999999     999999999999999999999999999999999   77


Q ss_pred             -HHHHHHHHHHHHcC
Q 047433          500 -KSLWRRSQAYDMKG  513 (614)
Q Consensus       500 -KAyyRRA~Al~~LG  513 (614)
                       .....++.+...++
T Consensus       132 ~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A          132 SVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence             44545555554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.78  E-value=1.7e-08  Score=103.44  Aligned_cols=109  Identities=6%  Similarity=-0.119  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----ccHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN----SHCK  500 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~----~~~K  500 (614)
                      +...|..++..|+|++|+..|.+|+++.... .....+.++.++|.+|..+|++++|+..+.+|+++.+..+    ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            3447888888888888888888888773321 1233577888888888888888888888888887744311    1346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ++..+|.++..+|++++|+..|++++++.|...+
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            7788888888888888888888888887665444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=3.5e-08  Score=90.23  Aligned_cols=113  Identities=7%  Similarity=-0.087  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCCCC-
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCL---SNPPN-  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL---dP~~~-  496 (614)
                      .+..+...|..++..|+|++|+..|.+++++.... .....+.++.++|.+|..+|++++|+..+.+++++   .++.+ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            45578888999999999999999999999865332 23345788999999999999999999999999988   33210 


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ....+++.+|.++..+|++++|+..+++++++.+...+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            14678889999999999999999999999987554334

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.77  E-value=4.5e-09  Score=114.06  Aligned_cols=107  Identities=9%  Similarity=-0.081  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..+++.|+|++|+..|++|++++|.+     +.++.|+|.+|..+|++++|+..+++|++++|+   +..+
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~  110 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-----IKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA  110 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            35688999999999999999999999999999999     999999999999999999999999999999999   8889


Q ss_pred             HHHHHHH--HHHcCCHHHHHHHHH-----------HHHHcCCCCCChH
Q 047433          502 LWRRSQA--YDMKGLGRESLMDCI-----------MFINGCIRSETTS  536 (614)
Q Consensus       502 yyRRA~A--l~~LG~yeEAL~df~-----------kALkl~P~~~D~~  536 (614)
                      +..++.+  +..+|++++|+..++           ++++..|+...+.
T Consensus       111 ~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~  158 (477)
T 1wao_1          111 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK  158 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence            9999988  889999999999999           8888888765543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.77  E-value=3.4e-08  Score=85.16  Aligned_cols=83  Identities=16%  Similarity=0.055  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------CCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS------NPP  495 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd------P~~  495 (614)
                      .+..+...|..++..|+|++|+..|+++++++|++     ..+|.++|.++..+|++++|+..++++++++      |. 
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-  110 (126)
T 3upv_A           37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-----VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS-  110 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh-
Confidence            45689999999999999999999999999999999     9999999999999999999999999999999      88 


Q ss_pred             CccHHHHHHHHHHHHHc
Q 047433          496 NSHCKSLWRRSQAYDMK  512 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~L  512 (614)
                        +..++..++.+...+
T Consensus       111 --~~~~~~~l~~~~~~l  125 (126)
T 3upv_A          111 --AREIDQLYYKASQQR  125 (126)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhh
Confidence              888888888776553

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.76  E-value=1.7e-08  Score=82.75  Aligned_cols=71  Identities=13%  Similarity=-0.075  Sum_probs=67.5

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          453 CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       453 ~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +|++     +.++.++|.+++..|++++|+..++++++++|.   +..+++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 ~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            2 VDQN-----PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCSS-----TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCc-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            5666     788999999999999999999999999999999   9999999999999999999999999999999885

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.76  E-value=3e-08  Score=92.52  Aligned_cols=98  Identities=7%  Similarity=-0.072  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|+++++++|.+     ..++.++|.+|..+|+|++|+..++++++++|.   +..++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  159 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-----VKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIR  159 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHH
Confidence            4578899999999999999999999999999999     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHc
Q 047433          503 WRRSQAYDMKGLGRESL-MDCIMFING  528 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL-~df~kALkl  528 (614)
                      ..++.++..+++.+++. ..|.+.+..
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          160 NSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988887 445555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=3.3e-08  Score=98.36  Aligned_cols=108  Identities=8%  Similarity=-0.061  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALG---VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---  495 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIe---l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---  495 (614)
                      .+..+...|..++..|+|++|+..|.+|++   ..|+. ......+++|+|.+|.++|+|++|+..+++|+++.+..   
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            456889999999999999999999999994   45543 22234799999999999999999999999999886431   


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCC
Q 047433          496 NSHCKSLWRRSQAYDMKGLGRES-LMDCIMFINGCI  530 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~LG~yeEA-L~df~kALkl~P  530 (614)
                      .....+|+++|.+|..+|++++| ...|++++.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            11378999999999999999999 777999998854

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.75  E-value=4.1e-08  Score=84.72  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~  497 (614)
                      .+..+...|..++..|+|++|+..|.+++++.+.. .......++.++|.++..+|++++|+..+++++++.+..   ..
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            45678899999999999999999999999987542 234457899999999999999999999999999874321   11


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ...+++.+|.++..+|++++|+..+++++++..
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.75  E-value=5.1e-08  Score=82.61  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|.+++++.|.+     ..++.++|.++..+|++++|+..++++++++|.   +..++
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~  121 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS---CKEAA  121 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---GTHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---chHHH
Confidence            4478889999999999999999999999999998     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCC
Q 047433          503 WRRSQAYDMKGL  514 (614)
Q Consensus       503 yRRA~Al~~LG~  514 (614)
                      +.++.++..+|+
T Consensus       122 ~~l~~~~~~~~~  133 (133)
T 2lni_A          122 DGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998874

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.75  E-value=2.7e-08  Score=90.14  Aligned_cols=81  Identities=14%  Similarity=0.003  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|+|++|+..|.++|+++|.+     ..+|.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~  115 (164)
T 3sz7_A           44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN---GGSD  115 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS---SCCH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---chHH
Confidence            45678999999999999999999999999999999     999999999999999999999999999999999   8888


Q ss_pred             HHHHHHHHH
Q 047433          502 LWRRSQAYD  510 (614)
Q Consensus       502 yyRRA~Al~  510 (614)
                      +++++.+..
T Consensus       116 ~~~~~l~~~  124 (164)
T 3sz7_A          116 AMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=99.10  Aligned_cols=103  Identities=14%  Similarity=-0.013  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC-----PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-----  491 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~-----P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-----  491 (614)
                      .+..+...|..++..|++++|+..|.+++++.     ++  ......++.++|.++..+|++++|+..+++++++     
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD--HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            44455566666666666666666666666664     21  2344555666666666666666666666666665     


Q ss_pred             ---CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          492 ---SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       492 ---dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                         +|.   ...+++.+|.++..+|++++|+..|+++++..
T Consensus       188 ~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          188 GPDDPN---VAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             CTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               444   55666666666666666666666666666553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=2.2e-08  Score=99.64  Aligned_cols=109  Identities=10%  Similarity=-0.051  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS--RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~--~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---  496 (614)
                      .+..+...|..++..|+|++|+..|.++++....  ......+.++.|+|.+|.++|+|++|+..+++|+++.+..+   
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            4557899999999999999999999999964321  12455678999999999999999999999999999875521   


Q ss_pred             ccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCC
Q 047433          497 SHCKSLWRRSQAYDMKGL-GRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~-yeEAL~df~kALkl~P  530 (614)
                      ....+|+++|.++..+|+ +++|+..|++++.+..
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            137899999999999994 7999999999998854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.72  E-value=9e-08  Score=106.67  Aligned_cols=109  Identities=13%  Similarity=-0.019  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC--CcHHHHHHH
Q 047433          418 EMRVLVGLIKQEAKHLFWLGE----------IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR--EPDAAISDA  485 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~Gd----------yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG--dyeeAI~D~  485 (614)
                      ..++....|..+|..+...|+          +++|+..|+++|+.+|.+     ..+|++|+.++.+++  +|++|+..+
T Consensus        58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW~hR~w~l~~l~~~~~~~el~~~  132 (567)
T 1dce_A           58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSRLPEPNWARELELC  132 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccccHHHHHHHH
Confidence            344566789999999988888          999999999999999999     999999999999999  669999999


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCC
Q 047433          486 TRALCLSNPPNSHCKSLWRRSQAYDMKG-LGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       486 ~~ALeLdP~~~~~~KAyyRRA~Al~~LG-~yeEAL~df~kALkl~P~~~D  534 (614)
                      ++++++||.   +..||..|+.++..+| .++++++++.++++.+|.+..
T Consensus       133 ~k~l~~d~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s  179 (567)
T 1dce_A          133 ARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (567)
T ss_dssp             HHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             HHHHhhccc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence            999999999   9999999999999999 999999999999999986443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.72  E-value=6.7e-08  Score=99.22  Aligned_cols=112  Identities=11%  Similarity=-0.067  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALC-----LSNPP  495 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-----LdP~~  495 (614)
                      .+..+...|..++..|+|++|+..|.+|+++.+.. .....+.++.|+|.+|..+|++++|+..+++|++     .+|. 
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-  259 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-  259 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence            56688999999999999999999999999986532 2345678999999999999999999999999999     7788 


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                        ...+++.+|.++..+|++++|+..+++++++.+...++.
T Consensus       260 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  298 (378)
T 3q15_A          260 --LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF  298 (378)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred             --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence              899999999999999999999999999999987655543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.71  E-value=4.5e-08  Score=98.55  Aligned_cols=112  Identities=10%  Similarity=-0.072  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---c
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---S  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---~  497 (614)
                      .+..+.+.|+.+...|+|++|+..|.+|+++.+... ....+.++.|+|.+|.. |++++|+..+++|+++.|...   .
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~  153 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence            566888999999999999999999999999965421 23457899999999999 999999999999999987521   1


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ...++.++|.+|..+|+|++|+..|++++++.|+..+
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            2678999999999999999999999999999775544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.71  E-value=1.8e-07  Score=95.95  Aligned_cols=106  Identities=16%  Similarity=0.033  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----ccH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN----SHC  499 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~----~~~  499 (614)
                      .+..+|..++..|+|++|+..|.+|+++.+.. .....+.++.++|.+|..+|+++.|+..+.+|+++.+..+    ...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            34455555566666666666666666554321 1233455556666666666666666666666655533211    123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .++..+|.++..+|++++|+..|++++++.+
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  213 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAM  213 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4555556666666666666666666655543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.71  E-value=1.1e-07  Score=98.59  Aligned_cols=164  Identities=8%  Similarity=-0.078  Sum_probs=116.4

Q ss_pred             HHHHcCCH-HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          432 HLFWLGEI-EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR--EPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       432 ~lFk~Gdy-eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG--dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      +..+.|.+ ++|+..++++|.++|++     ..+|++|+.++..++  ++++++..++.+|.++|.   +..+|+.|+.+
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~~-----~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~i  112 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELASH-----YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLI  112 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHH
Confidence            33445655 68999999999999999     999999999999999  999999999999999999   99999999999


Q ss_pred             H----HHc---CCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHH--HHHHHHhhhhhcCCCCCCCCccCCcC
Q 047433          509 Y----DMK---GLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHM--NALWVFGGARSKILSSPVNNVQESYG  579 (614)
Q Consensus       509 l----~~L---G~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqm--ea~~lF~~Ai~k~~~~~~~~~~e~~~  579 (614)
                      +    ..+   +++++++..+.++++.+|++...-....   ++...++..-  ++...+.+++..++.....-.+....
T Consensus       113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~---~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l  189 (306)
T 3dra_A          113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRK---WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL  189 (306)
T ss_dssp             HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9    777   8999999999999999885433211111   1111111111  23344555666554433211111111


Q ss_pred             Ccc------cchhhhHHHHHHHHHHhcccccCC
Q 047433          580 ENK------SGIEEQRYCDMIRTMMEKKNLISG  606 (614)
Q Consensus       580 ~~~------~g~~eQ~~dD~iral~~~~~~~~g  606 (614)
                      ...      ...-+++++.+.++|..+|+..|.
T Consensus       190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa  222 (306)
T 3dra_A          190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPST  222 (306)
T ss_dssp             HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence            111      123677888889999999887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.70  E-value=1.4e-07  Score=82.67  Aligned_cols=98  Identities=5%  Similarity=-0.207  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP  542 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~  542 (614)
                      ..+.++|.++++.|++++|+..++++++++|+   +..+|+.+|.++..+|++++|+..|+++++++|++.+  ....+.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~la   92 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA--VHAALA   92 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Confidence            35788999999999999999999999999999   9999999999999999999999999999999996433  222222


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          543 YYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       543 ~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                       .+....++..++...|.+++...
T Consensus        93 -~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           93 -VSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -HHHHHcCCHHHHHHHHHHHHHhC
Confidence             12223344445555666666544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.69  E-value=9.5e-08  Score=82.18  Aligned_cols=74  Identities=12%  Similarity=0.015  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|..++..|+|++|+..|.+++++.|++     +.++.++|.++..+|++++|+..++++++++|+   +..
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~   96 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSD---DET   96 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHH
Confidence            356689999999999999999999999999999999     999999999999999999999999999999999   665


Q ss_pred             HH
Q 047433          501 SL  502 (614)
Q Consensus       501 Ay  502 (614)
                      ..
T Consensus        97 ~~   98 (117)
T 3k9i_A           97 IQ   98 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=2.4e-06  Score=82.87  Aligned_cols=183  Identities=10%  Similarity=-0.035  Sum_probs=125.7

Q ss_pred             cccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHh----ccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcH
Q 047433          292 SKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFL----LKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLG  365 (614)
Q Consensus       292 ~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~L----lkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lG  365 (614)
                      ...|+  +|+..++++++  ++     +...+..++.++..    .+|.+.....+.+++..- + ....      ..+|
T Consensus        17 ~~~~~~~~A~~~~~~a~~--~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~-~~a~------~~lg   81 (273)
T 1ouv_A           17 YKEKDFTQAKKYFEKACD--LK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-Y-SNGC------HLLG   81 (273)
T ss_dssp             HHTTCHHHHHHHHHHHHH--TT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C-HHHH------HHHH
T ss_pred             HhCCCHHHHHHHHHHHHH--CC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-C-HHHH------HHHH
Confidence            34444  68888888888  22     23566677888888    888888888888876441 1 0000      1111


Q ss_pred             HHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH----cCCHHH
Q 047433          366 EAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFW----LGEIEE  441 (614)
Q Consensus       366 e~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk----~Gdyee  441 (614)
                              ..|.....  ......+++.-+....          ..         ..+..+...|..+..    .+++++
T Consensus        82 --------~~~~~g~~--~~~~~~~A~~~~~~a~----------~~---------~~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           82 --------NLYYSGQG--VSQNTNKALQYYSKAC----------DL---------KYAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             --------HHHHHTSS--SCCCHHHHHHHHHHHH----------HT---------TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             --------HHHhCCCC--cccCHHHHHHHHHHHH----------Hc---------CCccHHHHHHHHHHcCCCcccCHHH
Confidence                    11111000  0111112222111111          11         134578888999998    999999


Q ss_pred             HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH----cC
Q 047433          442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM----KG  513 (614)
Q Consensus       442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~----LG  513 (614)
                      |+..|.++++..+       ..++.++|.+|..    .+++++|+..++++++++     +..+++.+|.+|..    .+
T Consensus       133 A~~~~~~a~~~~~-------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~  200 (273)
T 1ouv_A          133 AVEYFTKACDLND-------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATK  200 (273)
T ss_dssp             HHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHhcCc-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCc
Confidence            9999999999763       7789999999999    999999999999999884     46899999999999    99


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 047433          514 LGRESLMDCIMFINGCI  530 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P  530 (614)
                      ++++|+..|+++++..|
T Consensus       201 ~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          201 NFKEALARYSKACELEN  217 (273)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhCCC
Confidence            99999999999999854

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.69  E-value=1.8e-08  Score=104.08  Aligned_cols=101  Identities=15%  Similarity=-0.047  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+.+.|..+++.|+|++|+..|+++|+++|.+     ..+|+|+|.+|..+|+|++|+.+++++++++|+   +..++..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~~  303 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN-----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRRE  303 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence            67889999999999999999999999999999     999999999999999999999999999999999   9999999


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          505 RSQA-YDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       505 RA~A-l~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+ ....+..+++...|.+++...|++.
T Consensus       304 L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          304 LRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            9988 4456788889999999999988543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.67  E-value=1.7e-07  Score=91.08  Aligned_cols=164  Identities=8%  Similarity=-0.120  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 047433          420 RVLVGLIKQEAKHLFW----LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCL  491 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk----~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeL  491 (614)
                      +..+..+...|..++.    .+++++|+..|.++++..  +     +.++.++|.+|..    .+++++|+..+++++++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            3455677888888888    899999999999998875  4     7888899999998    89999999999999887


Q ss_pred             CCCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHH---HHHHHHHHHHHHhhhhh
Q 047433          492 SNPPNSHCKSLWRRSQAYDM----KGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAAR---MISKHMNALWVFGGARS  564 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r---~i~Kqmea~~lF~~Ai~  564 (614)
                      +     +..+++.+|.+|..    .|++++|+..|+++++..+    +.....+......   ...+..++...|.+++.
T Consensus       108 ~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  178 (273)
T 1ouv_A          108 K-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACD  178 (273)
T ss_dssp             T-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             C-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            4     57889999999988    8999999999999988742    3222222211110   01223345556666665


Q ss_pred             cCCCCCCCCccCCc----CCcccchhhhHHHHHHHHHHhcc
Q 047433          565 KILSSPVNNVQESY----GENKSGIEEQRYCDMIRTMMEKK  601 (614)
Q Consensus       565 k~~~~~~~~~~e~~----~~~~~g~~eQ~~dD~iral~~~~  601 (614)
                      ...  +.....-..    +.+..+..++++..+.+++...+
T Consensus       179 ~~~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          179 LKD--SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             TTC--HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCC--HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            421  111111111    22226666667777766666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.66  E-value=1.1e-07  Score=100.03  Aligned_cols=94  Identities=17%  Similarity=0.072  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ...+..+.+.|..+++.|+|++|+..|+++|+++|++     +.+|.++|.+|..+|+|++|+.++++|++++|+   +.
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---~~  341 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN-----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DK  341 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CH
Confidence            3466789999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Q 047433          500 KSLWRRSQAYDMKGLGRESLMD  521 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~d  521 (614)
                      .++..++.++..+++++++.+.
T Consensus       342 ~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          342 AIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.64  E-value=2.2e-07  Score=80.08  Aligned_cols=104  Identities=13%  Similarity=-0.029  Sum_probs=79.6

Q ss_pred             hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          452 VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       452 l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..|..     +..+.++|.+++..|+|++|+..++++++++|.   +..+++.+|.++..+|++++|+..|++++++.|+
T Consensus         4 ~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            4 MKSPS-----AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             --CCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             Ccccc-----HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            45566     899999999999999999999999999999999   9999999999999999999999999999999985


Q ss_pred             CCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          532 SETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       532 ~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      +.  .....+. .+....++..++...|..++...
T Consensus        76 ~~--~~~~~l~-~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           76 SV--KAHFFLG-QCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             CH--HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHH-HHHHHHhhHHHHHHHHHHHHHHC
Confidence            32  2222222 11112223334555666666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.63  E-value=5.7e-08  Score=82.10  Aligned_cols=68  Identities=13%  Similarity=0.020  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+..+...|..++..|+|++|+..|+++++++|++     ..+|.++|.+|..+|++++|+..+++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY-----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            45678999999999999999999999999999999     899999999999999999999999999999875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.63  E-value=3.9e-07  Score=100.18  Aligned_cols=117  Identities=15%  Similarity=-0.073  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          412 SEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       412 s~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      +.+........+....+++..+..+|+|++|+..|.++|++...-   .....+..++|+|.+|..+|+|++|+..+.++
T Consensus       298 s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344444455566667777778888999999999999999874331   23567889999999999999999999999999


Q ss_pred             Hhc-----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          489 LCL-----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       489 LeL-----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      |++     .|+++.-..++.++|.+|..+|+|++|+..|++|+++
T Consensus       378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            975     3442235689999999999999999999999999965

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.63  E-value=1.6e-07  Score=77.38  Aligned_cols=67  Identities=12%  Similarity=-0.020  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK-SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K-AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ..++|.+++..|+|++|+..++++++++|.   +.. +++.+|.++..+|++++|+..|++++++.|++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            367899999999999999999999999999   999 9999999999999999999999999999986443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=3.8e-07  Score=75.63  Aligned_cols=83  Identities=19%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ...+...|..++..|++++|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|.   +..++
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  114 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAK  114 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHH
Confidence            3467788999999999999999999999999998     899999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcC
Q 047433          503 WRRSQAYDMKG  513 (614)
Q Consensus       503 yRRA~Al~~LG  513 (614)
                      ..+|.++..+|
T Consensus       115 ~~l~~~~~~~g  125 (125)
T 1na0_A          115 QNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcc
Confidence            99999988765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.61  E-value=6e-07  Score=89.17  Aligned_cols=109  Identities=11%  Similarity=-0.054  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---cCCCCC-
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALC---LSNPPN-  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe---LdP~~~-  496 (614)
                      ....+...|..+...|+|++|+..|.+|+++.+... ....+.+++|+|.+|..+|+|++|+..+++|++   ..|+.+ 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            334456688888999999999999999999876532 223467999999999999999999999999994   455411 


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ....+++++|.+|..+|+|++|+..|++++++.+
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            1227999999999999999999999999999864

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.60  E-value=2.9e-07  Score=91.50  Aligned_cols=111  Identities=12%  Similarity=-0.045  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CCCCc
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLS----NPPNS  497 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd----P~~~~  497 (614)
                      +..+...|..++..|+|++|+..|.+|+++.+... ......+++|+|.+|..+|+|++|+..+++|+++-    ...+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            44566689989999999999999999999765532 22345689999999999999999999999999531    11112


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ...+++++|.+|..+|+|++|+..+++++++.+...
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence            567999999999999999999999999999976443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.59  E-value=4.4e-07  Score=96.06  Aligned_cols=114  Identities=12%  Similarity=-0.035  Sum_probs=94.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc-C-CcHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL-R-EPDAAISDAT  486 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL-G-dyeeAI~D~~  486 (614)
                      .++..-+..+++....|..+|..+...| .+++++..++++|..+|.+     ..+|++|+.++..+ + ++++++..++
T Consensus        75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-----y~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-----YQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            4444445555666777888888888888 5888999999999888888     88899998888888 7 8888999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGR--------ESLMDCIMFINGCIR  531 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye--------EAL~df~kALkl~P~  531 (614)
                      ++|+++|.   +..+|..|+.++..+|.++        ++++.+.++++.+|.
T Consensus       150 k~L~~dpk---Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          150 GSLLPDPK---NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             HHTSSCTT---CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhCCC---CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            99999988   8889988888888888887        888888888888774

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.59  E-value=2.5e-07  Score=74.06  Aligned_cols=68  Identities=16%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +.++.++|.++...|++++|+..++++++++|.   +..+++.+|.++..+|++++|+..|++++++.|++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            788999999999999999999999999999999   99999999999999999999999999999998853

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.58  E-value=2.6e-07  Score=95.73  Aligned_cols=111  Identities=12%  Similarity=-0.033  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHH----HHc---CCcHHHHHHH
Q 047433          415 KVEEMRVLVGLIKQEAKHLFWLG--EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH----LLL---REPDAAISDA  485 (614)
Q Consensus       415 el~~~~~~A~~lK~~GN~lFk~G--dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~y----lkL---GdyeeAI~D~  485 (614)
                      -+..++.....|..+|..+...|  ++++++..++++|..+|.+     ..+|++|+.++    ..+   +++++++..+
T Consensus        59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~  133 (306)
T 3dra_A           59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----YQIWNYRQLIIGQIMELNNNDFDPYREFDIL  133 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHH
T ss_pred             HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            34444556778999999999999  9999999999999999999     99999999999    778   8999999999


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCC
Q 047433          486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGR--ESLMDCIMFINGCIRSE  533 (614)
Q Consensus       486 ~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye--EAL~df~kALkl~P~~~  533 (614)
                      +++++++|.   +..+|+.|+.++..+|.++  ++++.+.++++.+|.+.
T Consensus       134 ~~~l~~~pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          134 EAMLSSDPK---NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHHHHCTT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence            999999999   9999999999999999999  99999999999988543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.57  E-value=2.7e-07  Score=96.94  Aligned_cols=170  Identities=13%  Similarity=0.043  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCC
Q 047433          426 IKQEAKHLFWLGEIE-EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE----------PDAAISDATRALCLSNP  494 (614)
Q Consensus       426 lK~~GN~lFk~Gdye-eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd----------yeeAI~D~~~ALeLdP~  494 (614)
                      +...-....+.|+|. +|+..++++|.++|.+     ..+|+.|+.++..+++          +++++..++.+|..+|.
T Consensus        32 ~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~-----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK  106 (331)
T 3dss_A           32 ATQAVFQKRQAGELDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  106 (331)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence            333344445678775 7999999999999999     9999999999988876          68999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHH-HHHHHHHHhhhhhcCCCCCC
Q 047433          495 PNSHCKSLWRRSQAYDMKGL--GRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISK-HMNALWVFGGARSKILSSPV  571 (614)
Q Consensus       495 ~~~~~KAyyRRA~Al~~LG~--yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~K-qmea~~lF~~Ai~k~~~~~~  571 (614)
                         +..+|+.|+.++..+|.  +++++..+.++++.+|.+..+-....   ++....+. ..++...+.+++..++....
T Consensus       107 ---ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~---~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          107 ---SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR---FVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             ---CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             ---CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence               99999999999999994  89999999999999885432211111   11111111 11233344555555444321


Q ss_pred             CCccC--------------CcCCcccchhhhHHHHHHHHHHhcccccCC
Q 047433          572 NNVQE--------------SYGENKSGIEEQRYCDMIRTMMEKKNLISG  606 (614)
Q Consensus       572 ~~~~e--------------~~~~~~~g~~eQ~~dD~iral~~~~~~~~g  606 (614)
                      .-.+.              +.+....+.-+++++.+.++|...|+..|.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence            11111              011111245678899999999999987653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.57  E-value=6e-07  Score=73.87  Aligned_cols=79  Identities=13%  Similarity=-0.016  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|.++++..|.+     ..++.++|.++..+|++++|+..++++++++|+   +..++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  109 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---NPQLK  109 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHHH
Confidence            4468889999999999999999999999999998     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHH
Q 047433          503 WRRSQAY  509 (614)
Q Consensus       503 yRRA~Al  509 (614)
                      ..++.+.
T Consensus       110 ~~l~~~~  116 (118)
T 1elw_A          110 EGLQNME  116 (118)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.55  E-value=1.3e-07  Score=89.80  Aligned_cols=68  Identities=18%  Similarity=0.021  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCcchhHHHH----HHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV-------CPSRPKNERMVLY----SNRAQCHLLLREPDAAISDATRALC  490 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel-------~P~~~~~~~a~ly----sNRA~~ylkLGdyeeAI~D~~~ALe  490 (614)
                      .+..|.++|..+.+.|+|++|+..|++||++       +|++     +.+|    +|||.++..+|++++|+.+|++||+
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE-----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4458999999999999999999999999999       9998     9999    9999999999999999999999999


Q ss_pred             cCCC
Q 047433          491 LSNP  494 (614)
Q Consensus       491 LdP~  494 (614)
                      ++|.
T Consensus       131 l~p~  134 (159)
T 2hr2_A          131 MIEE  134 (159)
T ss_dssp             HHHH
T ss_pred             cCCC
Confidence            9998

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.54  E-value=2.8e-07  Score=99.28  Aligned_cols=100  Identities=8%  Similarity=-0.144  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERM-VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a-~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ...+...|..+.+.|++++|...|.+++++.|.+     + .+|.+.+.++.+.|++++|+..+.+|++..|.   ....
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~---~~~~  392 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHHV  392 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---CTHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---chHH
Confidence            3344455555555555555555555555555543     3 35555555555555555555555555555554   4444


Q ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQA-YDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~A-l~~LG~yeEAL~df~kALkl~P  530 (614)
                      ++..+.. +...|++++|...|+++++..|
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p  422 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYG  422 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence            4444333 2235555555555555555555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.52  E-value=3.4e-07  Score=78.12  Aligned_cols=71  Identities=13%  Similarity=-0.122  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..+.++|.+++..|+|++|+..++++++.+|+......+++.+|.++..+|++++|+..|+++++..|++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            45788999999999999999999999999999222228999999999999999999999999999998653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.50  E-value=5.1e-07  Score=82.46  Aligned_cols=113  Identities=11%  Similarity=-0.047  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---C
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP--KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---N  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~--~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~  496 (614)
                      .+..+...|..+...|++++|+..|.+++++.....  ......++.|+|.++..+|++++|+..+++++++.+..   .
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  144 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV  144 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence            566889999999999999999999999999832211  22457889999999999999999999999999774321   1


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ....++..+|.++..+|++++|+..+++++++.....+
T Consensus       145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  182 (203)
T 3gw4_A          145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED  182 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            12456789999999999999999999999998654333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=9.4e-07  Score=76.30  Aligned_cols=80  Identities=16%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ...+...|..++..|+|++|+..|.+++++.|.+     ..++.++|.+|..+|++++|+..++++++++|+   +..++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  136 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK---NKVFQ  136 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS---CHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHH
Confidence            5578899999999999999999999999999998     999999999999999999999999999999999   88888


Q ss_pred             HHHHHHHH
Q 047433          503 WRRSQAYD  510 (614)
Q Consensus       503 yRRA~Al~  510 (614)
                      ..++.+..
T Consensus       137 ~~l~~~~~  144 (148)
T 2dba_A          137 EALRNISG  144 (148)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            77777643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.46  E-value=7.5e-06  Score=85.95  Aligned_cols=116  Identities=9%  Similarity=-0.097  Sum_probs=103.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-cHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLG--EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-PDAAISDAT  486 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~G--dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-yeeAI~D~~  486 (614)
                      .+...-+...++....|..++..+...|  ++++++..++++|+.+|.+     ..+|++|+.+...+|. +++++..++
T Consensus        95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            4555556666778889999999999988  4999999999999999999     9999999999999999 599999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMK--------------GLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~L--------------G~yeEAL~df~kALkl~P~~~  533 (614)
                      ++|+.+|.   +..||..|+.++..+              +.++++++.+.+++..+|++.
T Consensus       170 ~~I~~~p~---N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          170 SLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHCSC---CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHCCC---CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            99999999   999999999999988              568999999999999999643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.45  E-value=8e-07  Score=75.53  Aligned_cols=84  Identities=11%  Similarity=-0.064  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|+|++|+..|.++++++|.+     ..++.++|.+|..+|++++|+..++++++++|.. .+..+.
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~   92 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR-GDQQVV   92 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ccHHHH
Confidence            4478899999999999999999999999999999     9999999999999999999999999999999851 033444


Q ss_pred             HHHHHHHHHc
Q 047433          503 WRRSQAYDMK  512 (614)
Q Consensus       503 yRRA~Al~~L  512 (614)
                      ......+..+
T Consensus        93 ~~l~~~l~~l  102 (115)
T 2kat_A           93 KELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.43  E-value=1.4e-06  Score=94.38  Aligned_cols=103  Identities=7%  Similarity=-0.107  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCCCCc
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-----SNPPNS  497 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-----dP~~~~  497 (614)
                      ..+.+...-..|+|++|+..|.++|++.-.-   .....+..++|+|.+|..+|+|++|+..+.++|++     .|+++.
T Consensus       301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  380 (433)
T 3qww_A          301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN  380 (433)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            3334444456789999999999999864221   23567889999999999999999999999999975     344222


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      -...|.++|.+|..+|+|++|+..|++|+++
T Consensus       381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          381 VASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999987

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.43  E-value=2.6e-07  Score=87.61  Aligned_cols=71  Identities=17%  Similarity=0.028  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-----------C
Q 047433          419 MRVLVGLIKQEAKHLFWLGEI----------EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-----------E  477 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~Gdy----------eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-----------d  477 (614)
                      .+..+..+.+.|+.+...+++          ++||..|++||+++|+.     ..+|+|+|.+|..+|           +
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-----~~A~~~LG~ay~~lg~l~P~~~~a~g~  106 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHN  106 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHhcccCcchhhhhcc
Confidence            344566788888888877765          59999999999999999     999999999999985           8


Q ss_pred             cHHHHHHHHHHHhcCCC
Q 047433          478 PDAAISDATRALCLSNP  494 (614)
Q Consensus       478 yeeAI~D~~~ALeLdP~  494 (614)
                      |++|+..|++|++++|+
T Consensus       107 ~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A          107 FDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999999999

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.39  E-value=1.2e-06  Score=92.78  Aligned_cols=160  Identities=8%  Similarity=-0.123  Sum_probs=117.6

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHc-C
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMK-G  513 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~L-G  513 (614)
                      .+..++|+..++++|.++|.+     ..+|++|+.++..+| ++++++..++.+|..+|+   +..+|+.|+.++..+ +
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~-----ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAH-----YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcC
Confidence            344578999999999999999     999999999999999 599999999999999999   999999999999998 8


Q ss_pred             -CHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHH--------HHHHHHhhhhhcCCCCCCCCccCCcCCc---
Q 047433          514 -LGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHM--------NALWVFGGARSKILSSPVNNVQESYGEN---  581 (614)
Q Consensus       514 -~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqm--------ea~~lF~~Ai~k~~~~~~~~~~e~~~~~---  581 (614)
                       ++++++..+.++++.+|++...-...  . ++...+++.-        ++...+.+++..++.....-.+......   
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R--~-wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYL--H-WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHH--H-HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHH--H-HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence             99999999999999999654332111  1 2222222211        3444556666666544322222211111   


Q ss_pred             ----ccchhhhHHHHHHHHHHhcccccCC
Q 047433          582 ----KSGIEEQRYCDMIRTMMEKKNLISG  606 (614)
Q Consensus       582 ----~~g~~eQ~~dD~iral~~~~~~~~g  606 (614)
                          ....-+++++.+.++|..+|+..|.
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~P~n~Sa  244 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLIPHNVSA  244 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence                1223467889999999999887654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.34  E-value=3.3e-06  Score=72.63  Aligned_cols=80  Identities=10%  Similarity=-0.013  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ......|+.+|..|+|..|+..|.+|++..+..  .......++.++|.||+++|+++.|+..+++|++++|+   +..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~---~~~~   82 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHH
Confidence            356789999999999999999999999975322  13456889999999999999999999999999999999   8888


Q ss_pred             HHHHH
Q 047433          502 LWRRS  506 (614)
Q Consensus       502 yyRRA  506 (614)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            77776

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.34  E-value=1.2e-05  Score=86.61  Aligned_cols=100  Identities=10%  Similarity=-0.059  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQC-HLLLREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~-ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .|...|+.+.+.|++++|+..|.+|++..|..     ...+...+.. +...|++++|...++++++.+|+   +..+|.
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~-----~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~---~~~~~~  429 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVL  429 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC---CHHHHH
Confidence            56677777777788888888888888877765     4555544443 44678888888888888888888   788888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ..+..+..+|++++|...|+++++..|.+
T Consensus       430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          430 AYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            88888888888888888888888876643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.29  E-value=6.2e-06  Score=83.48  Aligned_cols=107  Identities=11%  Similarity=-0.068  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-----Ccc
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-----NSH  498 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-----~~~  498 (614)
                      .+...|..++..|++++|+..|.+++.+.|... ......++.++|.++...|++++|+..+++++++.+..     +..
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            344555555555555555555555555543321 11223345555555555555555555555555543110     003


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..++..+|.++..+|++++|...+++++...+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            344555555555555555555555555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.27  E-value=4.1e-06  Score=70.11  Aligned_cols=69  Identities=13%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          461 RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       461 ~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      .+..+.++|.+++..|++++|+..+.++++++|.   +..+++.+|.++..+|++++|+..|+++++..|+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            3678999999999999999999999999999999   99999999999999999999999999999998743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.25  E-value=2.5e-05  Score=74.44  Aligned_cols=99  Identities=7%  Similarity=-0.172  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 047433          422 LVGLIKQEAKHLFW----LGEIEEAAMKYTEALGVCP--SRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCL  491 (614)
Q Consensus       422 ~A~~lK~~GN~lFk----~GdyeeAI~~YtkAIel~P--~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeL  491 (614)
                      .+..+...|..++.    .+++++|+..|.+|++..|  ..     +.++.|+|.+|..    .+++++|+..+++|+++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-----VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH-----HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            34567888888887    8999999999999999888  34     7899999999999    89999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 047433          492 SNPPNSHCKSLWRRSQAYDMK-G-----LGRESLMDCIMFINGC  529 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~L-G-----~yeEAL~df~kALkl~  529 (614)
                       |.   +..+++.+|.+|..- |     ++++|+..|+++++..
T Consensus       159 -~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          159 -SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             -SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             -CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence             55   678999999999875 3     8999999999999984

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.23  E-value=7e-06  Score=88.55  Aligned_cols=105  Identities=8%  Similarity=-0.028  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCCC
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-----SNPP  495 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-----dP~~  495 (614)
                      .........+..+|+|++|+..|.+++++.-.-   .....+..+.|+|.+|..+|+|++|+..+.++|++     .|++
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            344455666778999999999999999874321   24567889999999999999999999999999965     3442


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      +.-...++++|.+|..+|++++|+..|++|+++
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            335689999999999999999999999999976

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.21  E-value=7.6e-06  Score=82.83  Aligned_cols=110  Identities=14%  Similarity=-0.043  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc---c
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS---H  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~---~  498 (614)
                      .+..+...|..++..|++++|+..+.+++...|.........++.++|.++...|++++|+..+.+++.+.|....   .
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4556778899999999999999999999999886544456678999999999999999999999999998765211   2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..++..+|.++..+|++++|+..|++++++.+.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  125 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  125 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999998653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.16  E-value=9.5e-06  Score=76.51  Aligned_cols=105  Identities=10%  Similarity=-0.029  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-C-CCCccHHHHHHHHHHHHHcC
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR---EPDAAISDATRALCLS-N-PPNSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG---dyeeAI~D~~~ALeLd-P-~~~~~~KAyyRRA~Al~~LG  513 (614)
                      ...+...|.+.++..|.+     ..+.+|.|.|+.+.+   +++++|..++.+++.+ | .   +.+++|.+|.+++.+|
T Consensus        14 l~~~~~~y~~e~~~~~~~-----~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHccCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHcc
Confidence            355677788888888877     999999999999998   7779999999999999 7 5   7899999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHH
Q 047433          514 LGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWV  558 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~l  558 (614)
                      +|++|+..++++|+..|++..+.       ....++.+.+.+.+.
T Consensus        86 ~Y~~A~~y~~~lL~ieP~n~QA~-------~Lk~~ie~~~~kdgl  123 (152)
T 1pc2_A           86 EYEKALKYVRGLLQTEPQNNQAK-------ELERLIDKAMKKDGL  123 (152)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHH-------HHHHHHHHHHHHhhH
Confidence            99999999999999998533221       334455555555433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.12  E-value=1.1e-05  Score=76.84  Aligned_cols=96  Identities=9%  Similarity=-0.171  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 047433          422 LVGLIKQEAKHLFWLG----EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSN  493 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~G----dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP  493 (614)
                      .+..+...|..+.. +    ++++|+..|.+|++  +.+     +.++.|+|.+|..    .+++++|+..+++|++.+|
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS-----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC-----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            34567788888877 6    89999999999976  455     8899999999998    8999999999999999988


Q ss_pred             --CCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 047433          494 --PPNSHCKSLWRRSQAYDM----KGLGRESLMDCIMFING  528 (614)
Q Consensus       494 --~~~~~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl  528 (614)
                        .   ++.+++.+|.+|..    .+++++|+..|+++++.
T Consensus       121 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          121 SDA---AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             SHH---HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             Ccc---hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence              4   58999999999999    88999999999999988

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.11  E-value=1.4e-05  Score=82.24  Aligned_cols=102  Identities=9%  Similarity=-0.185  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CCCCccHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS--NPPNSHCKSL  502 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd--P~~~~~~KAy  502 (614)
                      .....|..+++.|+|++|+..|++++...+.   .....+++++|.++..+|++++|+..+++++.-.  |.  ....++
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~--~~~da~  211 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK---FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA--CARAIA  211 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT--THHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc--ccHHHH
Confidence            6788999999999999999999988775321   1124589999999999999999999999999654  43  156799


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +++|.++..+|+.++|...|++++..+|+
T Consensus       212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          212 WYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999995

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.10  E-value=7.4e-06  Score=84.31  Aligned_cols=133  Identities=10%  Similarity=-0.161  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc-HHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH-CKSLWR  504 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~-~KAyyR  504 (614)
                      ....+..+...|+|++|.+.|+..+...|.+     . .++++|..+++.++|++|+..++.++...++  .. ..+++.
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~--~~~~~a~~~  176 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEH-----L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK--FLAGAAGVA  176 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc--ccHHHHHHH
Confidence            4456788889999999999999999988876     6 9999999999999999999999988876433  02 358999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC--CCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGC--IRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~--P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      +|.++..+|++++|+..|++++...  |.. .++.... .-.+.+.+++.-++...|+++...++.
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~-~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWY-LAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999543  210 1121111 223444455556777888888776643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.10  E-value=2.2e-05  Score=67.11  Aligned_cols=71  Identities=11%  Similarity=-0.010  Sum_probs=66.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          453 CPSRPKNERMVLYSNRAQCHLLLRE---PDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       453 ~P~~~~~~~a~lysNRA~~ylkLGd---yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      +|++     +.++..+|.+++..++   .++|...+++||++||+   ++.+++-+|..++..|+|++|+..++++++..
T Consensus         2 ~p~~-----~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVT-----ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCC-----HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCC-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5777     9999999999987766   79999999999999999   99999999999999999999999999999999


Q ss_pred             CC
Q 047433          530 IR  531 (614)
Q Consensus       530 P~  531 (614)
                      |.
T Consensus        74 p~   75 (93)
T 3bee_A           74 DP   75 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            86

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.06  E-value=2.7e-05  Score=85.53  Aligned_cols=107  Identities=9%  Similarity=-0.049  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC----PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-----  491 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~----P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-----  491 (614)
                      ..+..+.+.|..+..+|+|++|+..|.++|++.    +. .....+..++|+|.+|..+|+|++|+..+.+|+++     
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            478899999999999999999999999999863    22 24567899999999999999999999999999975     


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          492 SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .|+++.-.+.+-.+++++.++|.|++|...|+++.+-
T Consensus       428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5663334577788999999999999999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.00011  Score=75.23  Aligned_cols=109  Identities=8%  Similarity=-0.115  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN----  496 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~----  496 (614)
                      .+..+...|+.++..|+|.+|+..+.+++...... .+...+.++.+.+.+|..+|+|++|...+++++.+.+..+    
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            35578889999999999999999999999875432 3567789999999999999999999999999998754321    


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      .....+...|..+...|+|++|..+|.++++..+
T Consensus       214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            1245677788999999999999999999998643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.97  E-value=0.00083  Score=71.39  Aligned_cols=162  Identities=12%  Similarity=-0.110  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhcCC
Q 047433          423 VGLIKQEAKHLFW----LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL-----REPDAAISDATRALCLSN  493 (614)
Q Consensus       423 A~~lK~~GN~lFk----~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL-----GdyeeAI~D~~~ALeLdP  493 (614)
                      +......|..+..    .+++++|+..|+++++.  .+     +.++.++|.+|...     +++++|+..++++++.+ 
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-  326 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN-----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-  326 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence            4466777777777    78888888888888765  33     67888888888887     88888888888888764 


Q ss_pred             CCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHH---HHHHHHHHHHHhhhhhcCC
Q 047433          494 PPNSHCKSLWRRSQAYDMKG---LGRESLMDCIMFINGCIRSETTSKRVKIPYYAARM---ISKHMNALWVFGGARSKIL  567 (614)
Q Consensus       494 ~~~~~~KAyyRRA~Al~~LG---~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~---i~Kqmea~~lF~~Ai~k~~  567 (614)
                          +..+++++|.+|...|   ++++|+..|+++++..    ++.....+......-   .....++...|.+++....
T Consensus       327 ----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~  398 (490)
T 2xm6_A          327 ----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL  398 (490)
T ss_dssp             ----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence                4578888888888766   7888888888888762    333222222111110   1122345566666665431


Q ss_pred             CCCCCCccC----CcCCcccchhhhHHHHHHHHHHhccc
Q 047433          568 SSPVNNVQE----SYGENKSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       568 ~~~~~~~~e----~~~~~~~g~~eQ~~dD~iral~~~~~  602 (614)
                        +....+-    ..+.+..+..+++...+.+++...|+
T Consensus       399 --~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          399 --SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             --HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence              1111111    12344466777777777787777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.93  E-value=0.0002  Score=76.11  Aligned_cols=97  Identities=11%  Similarity=-0.044  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCC
Q 047433          423 VGLIKQEAKHLFWLG---EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPP  495 (614)
Q Consensus       423 A~~lK~~GN~lFk~G---dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~  495 (614)
                      +..+...|..++..|   ++++|+..|+++++.  .+     +.++.++|.+|..    .+++++|+..+++|++..   
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---  397 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE-----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---  397 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---
Confidence            446778888888866   899999999999997  45     8999999999999    899999999999999864   


Q ss_pred             CccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 047433          496 NSHCKSLWRRSQAYDM----KGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~P~  531 (614)
                        +..+++++|.+|..    .+++++|+..|+++++..|+
T Consensus       398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence              56899999999999    89999999999999999853

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.90  E-value=0.0001  Score=78.69  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHH-----------------------------
Q 047433          424 GLIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQC-----------------------------  471 (614)
Q Consensus       424 ~~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~-----------------------------  471 (614)
                      -.+..+|..++..++   +.+|+..|.+||+++|++     +.+|..++.|                             
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-----a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-----TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            345566666665543   578899999999999987     5555544443                             


Q ss_pred             ---------------HHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          472 ---------------HLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       472 ---------------ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                                     ++..|++++|+..+++|+.++|+    .-+|.-+|.++...|++++|++.|.+|+.++|
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence                           44467888888888888888765    56777778888888888888888888888877

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.85  E-value=0.00013  Score=65.47  Aligned_cols=89  Identities=4%  Similarity=-0.259  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .|..++..+.+++|+..|++|.+.  .+     +.+++|+|.+|..    .+++++|+..+++|.+.  .   ++.++++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~a~~~   98 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NS-----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---DQDGCLI   98 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CC-----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C---CHHHHHH
Confidence            788888888899999999999997  45     8999999999999    89999999999999987  4   6899999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHcC
Q 047433          505 RSQAYDM----KGLGRESLMDCIMFINGC  529 (614)
Q Consensus       505 RA~Al~~----LG~yeEAL~df~kALkl~  529 (614)
                      +|.+|..    .+++++|+..|+++.+..
T Consensus        99 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           99 LGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            9999999    999999999999999983

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=9.1e-05  Score=75.97  Aligned_cols=107  Identities=8%  Similarity=-0.086  Sum_probs=84.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCccHHHHH
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP---PNSHCKSLW  503 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~---~~~~~KAyy  503 (614)
                      ..|......|+++.|+..|++++...+.. ....++.++.++|.+|...|+|.+|+..+.+++..-..   .+....++.
T Consensus       100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  179 (434)
T 4b4t_Q          100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHL  179 (434)
T ss_dssp             HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            34555556788888888888888775442 23456889999999999999999999999999875221   122678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ..|.+|..+|++++|...|+++++..+...+
T Consensus       180 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  210 (434)
T 4b4t_Q          180 LESKVYHKLRNLAKSKASLTAARTAANSIYC  210 (434)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999988654443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.75  E-value=0.00028  Score=60.18  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+..+...|..++..++   ..+|...+.+||+++|++     +.++..+|..+++.|+|++||..++++++.+|.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34567888999976665   799999999999999999     999999999999999999999999999999998

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.72  E-value=0.0011  Score=69.03  Aligned_cols=105  Identities=16%  Similarity=-0.012  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----------CCCCCccHHHHHHHH
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----------SNPPNSHCKSLWRRS  506 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----------dP~~~~~~KAyyRRA  506 (614)
                      +++++|+..|+++.+..|+.   ....++.|   +++++|+|++|..+++.++++          +|+   ++.++.++.
T Consensus       192 ~~~q~A~~~f~El~~~~p~~---~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~---~~~~LaN~i  262 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTW---KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY---KPTFLANQI  262 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSH---HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS---HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCc---ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC---CHHHHHHHH
Confidence            38999999999999888861   00455666   899999999999999988887          588   999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          507 QAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       507 ~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      .+...+|+  +|.+.+.++.+..|++  |-            +....++...|.+++.+-
T Consensus       263 ~l~~~lgk--~a~~l~~qL~~~~P~h--p~------------i~d~~~k~~~Fd~~~~ky  306 (310)
T 3mv2_B          263 TLALMQGL--DTEDLTNQLVKLDHEH--AF------------IKHHQEIDAKFDELVRKY  306 (310)
T ss_dssp             HHHHHTTC--TTHHHHHHHHHTTCCC--HH------------HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCh--HHHHHHHHHHHhCCCC--hH------------HHHHHHHHHHHHHHHHHh
Confidence            99999998  8999999999999853  22            222233455677776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.62  E-value=0.00091  Score=81.64  Aligned_cols=125  Identities=16%  Similarity=0.055  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--------
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP--------  495 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~--------  495 (614)
                      ..+...|+.++..|+|++|+..|++|             ..|..+|.||.++|+|++|++.+++|...++-.        
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            35678999999999999999999986             258999999999999999999999995444300        


Q ss_pred             --------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH-HHHHHHHHHHHHHHHHHh
Q 047433          496 --------------NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP-YYAARMISKHMNALWVFG  560 (614)
Q Consensus       496 --------------~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~-~y~~r~i~Kqmea~~lF~  560 (614)
                                    ..+++-+...+..|...|.|++|+..|+.++.++|.+..-  ...+. .|....-.+.|+....|.
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm--ftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM--FTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH--HHHHHHHHHhCCHHHHHHHHHHHH
Confidence                          0034456677888999999999999999999997643221  11111 123333455566666666


Q ss_pred             hhh
Q 047433          561 GAR  563 (614)
Q Consensus       561 ~Ai  563 (614)
                      ..+
T Consensus      1341 ~ri 1343 (1630)
T 1xi4_A         1341 SRV 1343 (1630)
T ss_pred             Hhc
Confidence            543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.59  E-value=0.00039  Score=59.45  Aligned_cols=72  Identities=10%  Similarity=-0.176  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPP----NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~----~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +.-...+|..+++.|+|..|+.-+..|++..+..    ......+..+|.+++++|++++|+..+++++++.|++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            5567889999999999999999999999874211    12678999999999999999999999999999999643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.48  E-value=0.00038  Score=74.29  Aligned_cols=91  Identities=9%  Similarity=-0.184  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCcc
Q 047433          426 IKQEAKHLFWLG---EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----REPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       426 lK~~GN~lFk~G---dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----GdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      +...|..+...|   ++++|+..|.++++..|..     +..++|+|.+|...    +++++|+..++++.   |.   +
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---~  247 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---Y  247 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---S
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---C
Confidence            334444444444   4444444444444444444     44444444444333    34444444444444   33   4


Q ss_pred             HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHH
Q 047433          499 CKSLWRRSQA-Y--DMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       499 ~KAyyRRA~A-l--~~LG~yeEAL~df~kALk  527 (614)
                      +.+++++|.+ +  ...|++++|+..|+++++
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            4444444444 2  234444444444444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.44  E-value=0.00053  Score=71.08  Aligned_cols=87  Identities=9%  Similarity=-0.081  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHHHHH-
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL-----REPDAAISDATRALCLSNPPNSH-CKSLWRRSQAYDM-  511 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL-----GdyeeAI~D~~~ALeLdP~~~~~-~KAyyRRA~Al~~-  511 (614)
                      ...|.....+||+++|+.   .-..+|.-+|..|.++     |+.++|...+++||+++|+   . ..+++-.|..+.. 
T Consensus       179 l~~A~a~lerAleLDP~~---~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY---QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---HDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---TCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHh
Confidence            478999999999999993   1177999999999996     9999999999999999997   5 8999999999988 


Q ss_pred             cCCHHHHHHHHHHHHHcCCC
Q 047433          512 KGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       512 LG~yeEAL~df~kALkl~P~  531 (614)
                      .|++++|...+++++...|.
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGG
T ss_pred             cCCHHHHHHHHHHHHcCCCC
Confidence            59999999999999999875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.44  E-value=0.00012  Score=79.76  Aligned_cols=163  Identities=14%  Similarity=-0.036  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|+.+++.|+|++|++.|.+|     .+     +..|.+.+.++...|+|+.|...... |..+|+      -
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~-----~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad------~  209 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKA-----NS-----TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD------E  209 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TC-----HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH------H
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHc-----CC-----chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh------h
Confidence            3344555555555555555555555555     12     45555555555555555555433332 223333      3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHH-HHHHHHHHHHHHHHHHhhhhhcCCCCCC-CCccCCcC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPY-YAARMISKHMNALWVFGGARSKILSSPV-NNVQESYG  579 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~-y~~r~i~Kqmea~~lF~~Ai~k~~~~~~-~~~~e~~~  579 (614)
                      .......|...|++++|+..+++++.+++.+-.  .-..++. |..-.-.|-|+....|...+.-.+--.. ........
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~--~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLERAHMG--MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            445668899999999999999999999753321  1122211 2333356667777777765433210000 11111222


Q ss_pred             CcccchhhhHHHHHHHHHHhcccc
Q 047433          580 ENKSGIEEQRYCDMIRTMMEKKNL  603 (614)
Q Consensus       580 ~~~~g~~eQ~~dD~iral~~~~~~  603 (614)
                      ..-.....+++|.+.-+|++.|..
T Consensus       288 ~~~ly~~~~e~d~A~~tm~~h~~~  311 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIITMMNHPTD  311 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred             HHHHHHhhchHHHHHHHHHhCChh
Confidence            333455567888888888888755

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.37  E-value=0.0034  Score=66.91  Aligned_cols=43  Identities=14%  Similarity=0.184  Sum_probs=25.9

Q ss_pred             HhhcccccCCCcchhhhhhHHHHhcc---ChhHHHHHHHHHHHHhh
Q 047433          307 ENLCNLSRSSDDWQYMGIDCLLFLLK---DPDTRYKVIETAALFLI  349 (614)
Q Consensus       307 ~~lc~~srssd~w~y~~idcll~Llk---d~~try~v~dka~~aLv  349 (614)
                      +.++..+...+.-.+..++.+..-.+   |.+.....+.+++..-+
T Consensus       165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~  210 (452)
T 3e4b_A          165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT  210 (452)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence            33444444445556777777777666   66666666666655433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.27  E-value=0.0018  Score=59.20  Aligned_cols=86  Identities=9%  Similarity=-0.061  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhcC-C-CCCccHHHHHHHHHHHHHcC
Q 047433          439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDA---AISDATRALCLS-N-PPNSHCKSLWRRSQAYDMKG  513 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyee---AI~D~~~ALeLd-P-~~~~~~KAyyRRA~Al~~LG  513 (614)
                      ...+...|.+++...+..     ...-+|.|-++++..+...   +|.-+...++-+ | .   ..+.+|.+|.+++++|
T Consensus        17 l~~~~~~y~~e~~~~~~s-----~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~---~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH---HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHHhh
Confidence            345566677777777776     8999999999999887777   999999998877 5 4   6789999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCC
Q 047433          514 LGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P~~  532 (614)
                      +|++|+..++.+|+..|++
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999853

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.25  E-value=0.0013  Score=58.77  Aligned_cols=78  Identities=10%  Similarity=-0.090  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH----c
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM----K  512 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~----L  512 (614)
                      +++++|+..|+++.+.....     +.    +|.+|...+.+++|+..+++|.+.  .   +..+++++|.+|..    .
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~-----a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF-----GC----LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-----HH----HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHcCCCHh-----hh----HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCC
Confidence            47899999999999987654     33    999999999999999999999987  4   68999999999999    8


Q ss_pred             CCHHHHHHHHHHHHHc
Q 047433          513 GLGRESLMDCIMFING  528 (614)
Q Consensus       513 G~yeEAL~df~kALkl  528 (614)
                      +++++|+..|+++.+.
T Consensus        75 ~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           75 KDLRKAAQYYSKACGL   90 (138)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcC
Confidence            9999999999999987

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.18  E-value=0.0011  Score=62.31  Aligned_cols=79  Identities=14%  Similarity=-0.050  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          423 VGLIKQEAKHLFWLG---EIEEAAMKYTEALGVC-PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       423 A~~lK~~GN~lFk~G---dyeeAI~~YtkAIel~-P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+...+.|..+.+.+   +++++|..+++.++.+ |.    ....+++|+|..|+++|+|++|.+.++++|+++|+   |
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~----~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~---n  104 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---N  104 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---C
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---C
Confidence            346777888888888   7889999999999988 62    23789999999999999999999999999999999   8


Q ss_pred             HHHHHHHHHH
Q 047433          499 CKSLWRRSQA  508 (614)
Q Consensus       499 ~KAyyRRA~A  508 (614)
                      ..|..-+-.+
T Consensus       105 ~QA~~Lk~~i  114 (152)
T 1pc2_A          105 NQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776544433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.17  E-value=0.0019  Score=78.88  Aligned_cols=94  Identities=17%  Similarity=0.018  Sum_probs=76.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH--------------------hhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEAL--------------------GVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAI--------------------el~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      .+-|..+...|.|++|+..|.++-                    +..+   +-..+.+|+++|.++.+.|++++||..|.
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Ae---rvn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAE---RCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            335777788888888877776542                    2221   11237899999999999999999999998


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      +|     +   +..+|++.|.++..+|+|++|++.|+++.+..+.
T Consensus      1130 KA-----d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1130 KA-----D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             hc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            87     5   7899999999999999999999999999998753

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.10  E-value=0.002  Score=61.53  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC---CC--
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR----PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSN---PP--  495 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP---~~--  495 (614)
                      .+.++...++..|.|+.|+..++.++.+..++    .......++...|++++..++|..|...|++||.+.-   ..  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            57888999999999999999999988775322    3456778999999999999999999999999986521   10  


Q ss_pred             -----------------CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433          496 -----------------NSHCKSLWRRSQAYDMKGLGRESLMDCIM  524 (614)
Q Consensus       496 -----------------~~~~KAyyRRA~Al~~LG~yeEAL~df~k  524 (614)
                                       ......-|+.|.||.++|++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                             00136889999999999999999987544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.98  E-value=0.0028  Score=68.52  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC----PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL  491 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~----P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL  491 (614)
                      ..+..+.+.|..+..+|+|++|+..|.++|++.    +. .....+..++|+|.+|..+|+|++|+..+.+|+++
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999862    22 24667899999999999999999999999999975

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.94  E-value=0.0035  Score=67.51  Aligned_cols=91  Identities=13%  Similarity=0.020  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC----PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-----  491 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~----P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-----  491 (614)
                      ..+..+.+.|..+...|+|++|+..|.++|++.    |. .....+..++|+|.+|..+|+|++|+..+.+|+++     
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l  405 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH  405 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            367789999999999999999999999999763    33 25667899999999999999999999999999975     


Q ss_pred             CCCCCccHHHHHHHHHHHHHc
Q 047433          492 SNPPNSHCKSLWRRSQAYDMK  512 (614)
Q Consensus       492 dP~~~~~~KAyyRRA~Al~~L  512 (614)
                      .|+++.-.+++..++.++.++
T Consensus       406 G~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          406 GREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHH
Confidence            555222345556667766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.91  E-value=0.0048  Score=64.23  Aligned_cols=100  Identities=8%  Similarity=-0.037  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCP--SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSL  502 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P--~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAy  502 (614)
                      +...|..++..|++++|+..+.++|...|  ..     ..++.-.+++++++|+++.|.+.+++..+.+|+. -..-...
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~-----lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l  177 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-----TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI  177 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence            45788888999999999999999999887  55     8899999999999999999999999999999810 0002445


Q ss_pred             HHHHHH--HHHcC--CHHHHHHHHHHHHHcCC
Q 047433          503 WRRSQA--YDMKG--LGRESLMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~A--l~~LG--~yeEAL~df~kALkl~P  530 (614)
                      ..++.+  ....|  ++.+|...|+++....|
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            555555  55556  99999999999888776

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.50  E-value=0.0011  Score=69.79  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CCCCCcccchhHhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhc---------------------------CC--ccc
Q 047433           49 MPLQDDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGV---------------------------NN--RDW   99 (614)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~---------------------------~~--~~~   99 (614)
                      ||..++.....++..|+|+|-..-+=..+.+.|+.+.+..|+....                           .+  ..+
T Consensus        41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~  120 (354)
T 3nmw_A           41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA  120 (354)
T ss_dssp             CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777666789999999975323335678899999999985321                           11  111


Q ss_pred             cccCCcccchh--------------hhhhhhhccccc-hHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433          100 LLRDQNIYIPY--------------YAAHVIGSYTMN-KVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLAS  164 (614)
Q Consensus       100 ~~~~~~~~~~y--------------y~ah~~gsy~~~-~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~  164 (614)
                      .....+=.||.              .|+-.++.-+.+ .++....-+++|+||+|+++|...-+.--++.|++||++|++
T Consensus       121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            11111112443              344455555554 234445556899999999986443366678899999999998


Q ss_pred             cc
Q 047433          165 YD  166 (614)
Q Consensus       165 ~~  166 (614)
                      +.
T Consensus       201 ~~  202 (354)
T 3nmw_A          201 HC  202 (354)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.28  E-value=0.039  Score=58.41  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------CcchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-----------------PKNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-----------------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      ..+...|......|+.++|+..+.+|+.+-...                 ..+.+..+...++.+++.+|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            355566777777899999999999999875321                 012344566778899999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      +++..+|-   +-.+|..+-.+|+..|+..+|+..|+++-+
T Consensus       196 ~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999   899999999999999999999999998865

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.90  E-value=0.0046  Score=59.33  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             hHHHHhhhCCCCCcccchhHhhHHHHHhhc-CCCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhcc
Q 047433           41 GVASFFKEMPLQDDQQHVLALSGLWNIAMT-QPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSY  119 (614)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy  119 (614)
                      ..-.|++.|...|.+.+.-++..|.+++-. .++-..+.+.|++.-...|+           ++.+.-+=..|+.++|..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-----------~~~~~~v~~~a~~~L~~l   81 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALSNI   81 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-----------cCCCHHHHHHHHHHHHHH
Confidence            356677888777777777788888776554 22222455566666555554           334456778999999999


Q ss_pred             ccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 047433          120 TMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTF  169 (614)
Q Consensus       120 ~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  169 (614)
                      +....+.....++.|+||+|+.+|+.. ++--|+.|+++|++|+..+..-
T Consensus        82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~  130 (252)
T 4db8_A           82 ASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ  130 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchH
Confidence            998889999999999999999999985 5667899999999998766543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.84  E-value=0.037  Score=52.31  Aligned_cols=113  Identities=21%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             HHHHhhhCCCCCcccchhHhhHHHHHhhcCC-CCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccc
Q 047433           42 VASFFKEMPLQDDQQHVLALSGLWNIAMTQP-DDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYT  120 (614)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~  120 (614)
                      |..+.+-|-..|.+-+.-++..|.+++-..| +-..+.+.|++.-...++.           +.+.-+=..|+.++|..+
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----------~~~~~v~~~a~~~L~~l~   72 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-----------STDSEVQKEAARALANIA   72 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-----------CCCHHHHHHHHHHHHHHH
Confidence            3444455544443335567788888887665 2233444566665555543           345667789999999999


Q ss_pred             cchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          121 MNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       121 ~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      .+.++.....++.|+||+|+.+|+.. +.--++.|+++|++|+.+.
T Consensus        73 ~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~  117 (252)
T 4hxt_A           73 SGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGP  117 (252)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSC
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence            99899999999999999999999964 4556889999999999643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.71  E-value=0.23  Score=56.65  Aligned_cols=102  Identities=7%  Similarity=-0.112  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          426 IKQEAKHLFWLG-EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       426 lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      +...+.-.++.+ +++.|...|.++|+..|++     ..++...+......|+.+.|-..+++|+...|+..-....|-.
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-----~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~  546 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYFATD-----GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK  546 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            334444445544 5899999999999999988     8888888888888999999999999999988731114445555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          505 RSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ...--...|+.+.+.+.++++++..|++
T Consensus       547 ~~~fE~~~G~~~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          547 VIFFESKVGSLNSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5666667899999999999999999953

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.22  Score=57.58  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      .+.-+..++.-+..+|+|+-|+..-.+|+...|.+     ...|..+|.||+++|+|+.|+--.+-.
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS-----FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-----hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44567888999999999999999999999999999     999999999999999999998655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.61  E-value=0.043  Score=58.53  Aligned_cols=67  Identities=13%  Similarity=0.030  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+..+...|..++..|++++|+..+++|+.++|+      ...|.-+|.++.-.|++++|+..+.+|+.++|.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4446777777788889999999999999999974      678899999999999999999999999999999

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.42  E-value=0.53  Score=50.40  Aligned_cols=103  Identities=12%  Similarity=-0.089  Sum_probs=82.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCccHHHH--
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP--PNSHCKSL--  502 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~--~~~~~KAy--  502 (614)
                      ..|.-++..|+|.+|+..+++.++-+.. +.+..+.+.+......|..++++.++-..++.|......  .++...+.  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6789999999999999999999987654 235678899999999999999999999999988755311  11234444  


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Q 047433          503 WRRSQAYD-MKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       503 yRRA~Al~-~LG~yeEAL~df~kALkl~P  530 (614)
                      ..-|..+. ..++|.+|..+|-++++...
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            44577888 89999999999999986644

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.40  E-value=0.014  Score=54.34  Aligned_cols=98  Identities=22%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             chhHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCC
Q 047433           57 HVLALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV  135 (614)
Q Consensus        57 ~~~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  135 (614)
                      +.-++..|.+++...|+. ..+.+.|++.-+..|+.           +.+.-|=..|+.++|..+....+.....++.|+
T Consensus        29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~   97 (210)
T 4db6_A           29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGA   97 (210)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence            445777888887544332 23455577666666553           345566778999999999888899999999999


Q ss_pred             chHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          136 IPPLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      ||+|+.+|... +.--++.|+.+|++|+...
T Consensus        98 i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~  127 (210)
T 4db6_A           98 LPALVQLLSSP-NEQILQEALWALSNIASGG  127 (210)
T ss_dssp             HHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHcCC-cHHHHHHHHHHHHHHHcCC
Confidence            99999999877 5667889999999999754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.18  E-value=0.025  Score=61.69  Aligned_cols=96  Identities=16%  Similarity=-0.091  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..|++.+..+...|+|+.|...... |...|+.        ......+|.+.|++++|++.+++++.+++.   +..
T Consensus       175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--------l~~lv~~Yek~G~~eEai~lLe~aL~le~a---h~~  242 (449)
T 1b89_A          175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--------LEELINYYQDRGYFEELITMLEAALGLERA---HMG  242 (449)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC---CHH
T ss_pred             CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--------HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH---HHH
Confidence            4677889999999999999999887775 4455543        335778899999999999999999999999   999


Q ss_pred             HHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 047433          501 SLWRRSQAYDM--KGLGRESLMDCIMFING  528 (614)
Q Consensus       501 AyyRRA~Al~~--LG~yeEAL~df~kALkl  528 (614)
                      .+..+|.+|.+  .++..|+++.|...+++
T Consensus       243 ~ftel~il~~ky~p~k~~ehl~~~~~~ini  272 (449)
T 1b89_A          243 MFTELAILYSKFKPQKMREHLELFWSRVNI  272 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence            99999998765  57777888877766655

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.02  E-value=0.16  Score=47.40  Aligned_cols=90  Identities=8%  Similarity=-0.080  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh
Q 047433          462 MVLYSNRAQCHLLLREP---DAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR  538 (614)
Q Consensus       462 a~lysNRA~~ylkLGdy---eeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k  538 (614)
                      ...-+|.|-|+++..+.   .++|.-++..++-+|.  ....-+|.+|.+++++|+|++|....+.+|+..|++..+.  
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~--  114 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG--  114 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH--
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH--
Confidence            78888999999987754   5789999999998884  1678899999999999999999999999999999533221  


Q ss_pred             cchHHHHHHHHHHHHHHHHHHh
Q 047433          539 VKIPYYAARMISKHMNALWVFG  560 (614)
Q Consensus       539 ~kl~~y~~r~i~Kqmea~~lF~  560 (614)
                           -...++.+++.+.++.-
T Consensus       115 -----~Lk~~Ie~~i~kdGliG  131 (144)
T 1y8m_A          115 -----ALKSMVEDKIQKETLKG  131 (144)
T ss_dssp             -----HHHHHHHHHHHHTTTTT
T ss_pred             -----HHHHHHHHHHHHhchhh
Confidence                 23345666666554433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.00  E-value=0.15  Score=46.98  Aligned_cols=69  Identities=7%  Similarity=-0.137  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          462 MVLYSNRAQCHLLLRE---PDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       462 a~lysNRA~~ylkLGd---yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +..-+|.|-|+++..+   ...+|.-++..++-+|.  ....-+|.+|.+++++|+|++|+...+.+|+..|++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            6778888888888764   45688888888888884  157889999999999999999999999999998853

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.63  E-value=0.082  Score=56.71  Aligned_cols=96  Identities=20%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             hHhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchH
Q 047433           59 LALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP  138 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  138 (614)
                      -++..|+|++...|+.+....-|++..+..|+           ++.+.-|=..|+.+++..+-...+..+..+..|+||+
T Consensus       222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-----------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          222 NATWTLSNFCRGKPQPSFEQTRPALPALARLI-----------HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            47888999998876655555556666666655           2345566778999999999888888888899999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          139 LMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       139 l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      |+++|... ++--+..|+++||.|++..
T Consensus       291 Lv~lL~~~-~~~v~~~a~~~L~nl~~~~  317 (528)
T 4b8j_A          291 LVELLLHP-SPSVLIPALRTVGNIVTGD  317 (528)
T ss_dssp             HHHHTTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCC-ChhHHHHHHHHHHHHHcCC
Confidence            99999877 5677899999999999854

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.59  E-value=0.027  Score=53.88  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=74.0

Q ss_pred             hHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      .++..|+|++...++- ..+.+.|++.-+..++           ++.+.-+=..|+.++|..+....+..+..++.|+||
T Consensus       115 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  183 (252)
T 4db8_A          115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP  183 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence            5778888887765544 4455556665555544           334556778999999999998888888899999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      +|+++|... ..--++.|+++|+.|++..
T Consensus       184 ~L~~ll~~~-~~~v~~~a~~~L~~l~~~~  211 (252)
T 4db8_A          184 ALVQLLSSP-NEQILQEALWALSNIASGG  211 (252)
T ss_dssp             HHHHGGGCS-SHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHHhcCC
Confidence            999999987 4445889999999999654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=94.59  E-value=0.028  Score=52.39  Aligned_cols=96  Identities=24%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             hHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -++..|+|++...|+. ..+.+.|++..+..+           +++.+.-+=..|+.+|+..+....+..+..+++|+||
T Consensus        73 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-----------L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  141 (210)
T 4db6_A           73 EALWALSNIASGGNEQIQAVIDAGALPALVQL-----------LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP  141 (210)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH-----------TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH-----------HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHH
Confidence            4677777777543321 122334444444444           4455677788999999999998888888889999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      +|+++|+.. +.--|+.|+.||+.|+++.
T Consensus       142 ~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A          142 ALVQLLSSP-NEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence            999999976 5566899999999999873

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.43  E-value=0.026  Score=53.41  Aligned_cols=101  Identities=20%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             chhHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCC
Q 047433           57 HVLALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV  135 (614)
Q Consensus        57 ~~~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  135 (614)
                      ..-++..|+|++...|+. ..+.+-|++..+..++.           +.+--+=..|+.+++..+....+.....++.|+
T Consensus       145 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  213 (252)
T 4hxt_A          145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----------STDSEVQKEAARALANIASGPTSAIKAIVDAGG  213 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            335888899998765544 35566778777777654           334566788999999999988889999999999


Q ss_pred             chHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 047433          136 IPPLMELLRGKISWVEQRVAVRALGHLASYDRTF  169 (614)
Q Consensus       136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  169 (614)
                      ||+|+++|...= .--|+.|+++|+.|+.+...+
T Consensus       214 i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          214 VEVLQKLLTSTD-SEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCcc
Confidence            999999998764 455899999999999877544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=94.35  E-value=0.12  Score=57.50  Aligned_cols=95  Identities=20%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             hHhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchH
Q 047433           59 LALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP  138 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  138 (614)
                      .++..|+|++-..|+ .+... |++.....|+           ++.+.-+=..|+.+++..+.+..+..+..++.|+||+
T Consensus       243 ~a~~~L~nL~~~~~~-~~~~~-~~i~~Lv~lL-----------~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~  309 (644)
T 2z6h_A          243 NCLWTLRNLSDAATK-QEGME-GLLGTLVQLL-----------GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA  309 (644)
T ss_dssp             HHHHHHHHHGGGCTT-CCSCH-HHHHHHHHHT-----------TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhhcchh-hhhhh-hHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence            477788888866544 33322 4444444443           3345566778999999999888888888999999999


Q ss_pred             HHHHhcccch-hhHHHHHHHHhhhhhhcc
Q 047433          139 LMELLRGKIS-WVEQRVAVRALGHLASYD  166 (614)
Q Consensus       139 l~~~~~~~~~-wve~r~~~r~l~h~a~~~  166 (614)
                      |+++|.-.=+ +--+..|++||++|++..
T Consensus       310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~  338 (644)
T 2z6h_A          310 LVRTVLRAGDREDITEPAICALRHLTSRH  338 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence            9999985432 566788999999998754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.31  E-value=0.18  Score=52.24  Aligned_cols=53  Identities=15%  Similarity=-0.011  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHHHHhcCCCCCccHH--HHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC
Q 047433          477 EPDAAISDATRALCLSNPPNSHCK--SLWRRSQAYDMK-----GLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       477 dyeeAI~D~~~ALeLdP~~~~~~K--AyyRRA~Al~~L-----G~yeEAL~df~kALkl~P~~  532 (614)
                      ....|.....+|+++||+   +..  +|.-+|..|..+     |+.+.|...|+++++++|+.
T Consensus       178 ~l~~A~a~lerAleLDP~---~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPS---YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            457899999999999999   655  999999999996     99999999999999999953

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=94.19  E-value=0.025  Score=58.09  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             hHhhHHHHHhhcCCCCC-CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDDP-LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -++..|.|++-.+|+-+ .|..-|.+.-...|+..           .+.-+=--|+-.|+..+-...+..+..|++|+||
T Consensus       144 ~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----------~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            35666666666555433 46677888777777653           2333445577777777666677888889999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASY  165 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~  165 (614)
                      +|++||+.. .--=|..|++||+.|++.
T Consensus       213 ~Lv~LL~~~-d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          213 QLVALVRTE-HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence            999999976 445578999999999987

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.04  E-value=0.18  Score=46.00  Aligned_cols=76  Identities=13%  Similarity=-0.073  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          425 LIKQEAKHLFWLGEIEE---AAMKYTEALGVC-PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       425 ~lK~~GN~lFk~Gdyee---AI~~YtkAIel~-P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ...+.|-.+.+..+-..   +|..++..+... |    ...-.+++.+|..++++|+|.+|...++..|+++|.   |..
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p----~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~---n~Q  109 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---NNQ  109 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHH
Confidence            45556666777666555   999999888865 3    234789999999999999999999999999999999   877


Q ss_pred             HHHHHHH
Q 047433          501 SLWRRSQ  507 (614)
Q Consensus       501 AyyRRA~  507 (614)
                      |.--+..
T Consensus       110 A~~Lk~~  116 (126)
T 1nzn_A          110 AKELERL  116 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554433

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=93.98  E-value=0.066  Score=58.21  Aligned_cols=116  Identities=18%  Similarity=0.268  Sum_probs=84.7

Q ss_pred             HHHHhhhCCCCCcccchhHhhHHHHHhhcCCCCC--CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhcc
Q 047433           42 VASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDP--LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSY  119 (614)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy  119 (614)
                      |...-+.+-..|.+.+.-++..+.++--..++.|  ++.+.|++.-...|+.          ++.|--|-+.||.+++..
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~----------~~~~~~~q~~Aa~aL~ni  147 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG----------KTDCSPIQFESAWALTNI  147 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT----------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc----------CCCCHHHHHHHHHHHHHH
Confidence            4444555555555555557777777654444444  5667777766555543          456677888999999999


Q ss_pred             ccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccc
Q 047433          120 TMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRT  168 (614)
Q Consensus       120 ~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~  168 (614)
                      .....+....-|++|+||+|+.||...-.=| |+.|+.|||.||.....
T Consensus       148 a~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v-~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          148 ASGTSEQTKAVVDGGAIPAFISLLASPHAHI-SEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHH-HHHHHHHHHHHhccCHH
Confidence            9888999999999999999999998765543 67899999999987543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.91  E-value=0.15  Score=48.71  Aligned_cols=84  Identities=21%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCC-----------------cchhHHHHHHHHHHHHHcCCcHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP---SRP-----------------KNERMVLYSNRAQCHLLLREPDAA  481 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P---~~~-----------------~~~~a~lysNRA~~ylkLGdyeeA  481 (614)
                      .++.+.-.|+.+|..|+|..|...|.+||.+.-   ...                 ...-.++.+..|.||++++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            566888999999999999999999999987532   110                 001136888999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 047433          482 ISDATRALCLSNPPNSHCKSLWRRSQAY  509 (614)
Q Consensus       482 I~D~~~ALeLdP~~~~~~KAyyRRA~Al  509 (614)
                      |...+..    |...+.++.-.-+|..|
T Consensus       142 i~~Le~I----p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGI----PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTS----CGGGCCHHHHHHHHHHC
T ss_pred             HHHHhcC----CchhcCHHHHHHHHHHh
Confidence            9975443    33233456555555544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=93.84  E-value=0.061  Score=58.61  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             HhhHHHHHhhcCCCCCCCc--cccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccc-hHHHHHHHHhcCCc
Q 047433           60 ALSGLWNIAMTQPDDPLFP--ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMN-KVEFAEKAVKSGVI  136 (614)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~--~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~  136 (614)
                      +...|+|++...++.+.+.  .-|++.-...           |++..+.-+-..|+-.++.-+.+ ..+.-..-+++|+|
T Consensus       220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~-----------LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI  288 (458)
T 3nmz_A          220 AGMALTNLTFGDVANKATLCSMKGCMRALVA-----------QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV  288 (458)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCHHHHHHHHH-----------GGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHhCCCcccHHHHHHcCCcHHHHHH-----------HHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCH
Confidence            5666778776554333332  2243444333           44455666777888888887775 34555566789999


Q ss_pred             hHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          137 PPLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       137 ~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      |||+++|...-+.--++.|++||+.|+++.
T Consensus       289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~  318 (458)
T 3nmz_A          289 KALMECALEVKKESTLKSVLSALWNLSAHC  318 (458)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCC
Confidence            999998644336667889999999999943

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=93.74  E-value=0.11  Score=55.78  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CCcccchhHhhHHHHHhhcCCCCC-CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHH
Q 047433           52 QDDQQHVLALSGLWNIAMTQPDDP-LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKA  130 (614)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~a  130 (614)
                      .|++-+.-+...|.|++...|+.- .+...|.+.-+..|+.           ..|.-+-..|+..++.-+....+.-..-
T Consensus        14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-----------s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A           14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-----------SPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-----------SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            344446668888888875444322 6778888888877764           2344566789998888877767777778


Q ss_pred             HhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHh
Q 047433          131 VKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVA  173 (614)
Q Consensus       131 v~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  173 (614)
                      |++|+||+|++||+..-+---|+-|+.||+.|++++.+=..|.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  125 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI  125 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH
Confidence            8999999999999833344557889999999999966544455

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.65  E-value=0.29  Score=55.85  Aligned_cols=81  Identities=11%  Similarity=-0.021  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH
Q 047433          440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAI-SDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES  518 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI-~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA  518 (614)
                      +.....|.++|..+|.+     ..+|...|.-+...|+.++|+ ..+.+|+...|.   +...++..+......|++++|
T Consensus       326 ~Rv~~~Ye~aL~~~p~~-----~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~a  397 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFA-----PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---SAVLAFSLSEQYELNTKIPEI  397 (679)
T ss_dssp             HHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHH
Confidence            45678899999999999     999999999999999999998 999999999999   888899999999999999999


Q ss_pred             HHHHHHHHHc
Q 047433          519 LMDCIMFING  528 (614)
Q Consensus       519 L~df~kALkl  528 (614)
                      ...|+++++.
T Consensus       398 R~iyek~l~~  407 (679)
T 4e6h_A          398 ETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999985

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=93.38  E-value=0.36  Score=55.43  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             HhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHH
Q 047433           60 ALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPL  139 (614)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l  139 (614)
                      ++..|.|++-..++..-+  -|++.....|    +++       .+.-+=..|+.+++..+.+..+.....++.|+||+|
T Consensus       380 a~~~L~~L~~~~~~~~~~--~~~i~~Lv~l----L~~-------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L  446 (780)
T 2z6g_A          380 CLWTLRNLSDAATKQEGM--EGLLGTLVQL----LGS-------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL  446 (780)
T ss_dssp             HHHHHHHHHTTCTTCSCC--HHHHHHHHHH----TTC-------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHhccchhhhhh--hhHHHHHHHH----HcC-------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            566677777665542211  2334333333    333       344455789999999999988888889999999999


Q ss_pred             HHHhcccchh-hHHHHHHHHhhhhhhcc
Q 047433          140 MELLRGKISW-VEQRVAVRALGHLASYD  166 (614)
Q Consensus       140 ~~~~~~~~~w-ve~r~~~r~l~h~a~~~  166 (614)
                      +++|.-.-++ --++.|+|+||+|++..
T Consensus       447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~  474 (780)
T 2z6g_A          447 VRTVLRAGDREDITEPAICALRHLTSRH  474 (780)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            9999865455 56788999999998643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.33  E-value=0.2  Score=46.16  Aligned_cols=77  Identities=13%  Similarity=-0.148  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          425 LIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       425 ~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ...+-+-.+.+..+   ...+|..++..+...|..    .-.+++.+|..++++|+|.+|.+.++..|+++|+   |..|
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~---N~QA  114 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NKQV  114 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT---CHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---CHHH
Confidence            34445555555554   467999999999877632    4789999999999999999999999999999999   8766


Q ss_pred             HHHHHHH
Q 047433          502 LWRRSQA  508 (614)
Q Consensus       502 yyRRA~A  508 (614)
                      .--+..+
T Consensus       115 ~~Lk~~I  121 (134)
T 3o48_A          115 GALKSMV  121 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544333

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.29  E-value=0.056  Score=53.82  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=78.5

Q ss_pred             chhHhhHHHHHhhcCC-CCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCC
Q 047433           57 HVLALSGLWNIAMTQP-DDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV  135 (614)
Q Consensus        57 ~~~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  135 (614)
                      +.-+..-|.|++...| +.-.+.+.|.+.-.-.|+.           ..+.-+=..|+..++.-+....+.-..-+++|.
T Consensus        27 q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-----------s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~Ga   95 (233)
T 3tt9_A           27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-----------VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNG   95 (233)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            3356677888886544 4446777888776666653           335567788999999988876677777779999


Q ss_pred             chHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHH
Q 047433          136 IPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSV  172 (614)
Q Consensus       136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~  172 (614)
                      ||||+.||+..=++--|+-|+.||.+|++++..=+.|
T Consensus        96 I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i  132 (233)
T 3tt9_A           96 VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM  132 (233)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence            9999999984336778999999999999987654433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.78  E-value=0.18  Score=58.31  Aligned_cols=60  Identities=12%  Similarity=0.003  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      .++.--|.-++..|+|+-|+..+++|+.+-|.   ..+.|++++.+|..+|+|+.|+-.+..+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            35555677778899999999999999999999   9999999999999999999999876665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.73  E-value=0.43  Score=44.43  Aligned_cols=74  Identities=12%  Similarity=-0.160  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          425 LIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       425 ~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      ...+-+-.+.+..+   ...+|..++..+...|..    .-.+++.+|..++++|+|.+|...++..|+++|+   |..|
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~---n~QA  113 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NKQV  113 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC---CHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cHHH
Confidence            44455566666654   457999999999977753    3678999999999999999999999999999999   7766


Q ss_pred             HHHH
Q 047433          502 LWRR  505 (614)
Q Consensus       502 yyRR  505 (614)
                      .--+
T Consensus       114 ~~Lk  117 (144)
T 1y8m_A          114 GALK  117 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=92.38  E-value=0.1  Score=58.66  Aligned_cols=122  Identities=13%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             hHHHHhhhCCCCCcccchhHhhHHHHHhhcC-CCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhcc
Q 047433           41 GVASFFKEMPLQDDQQHVLALSGLWNIAMTQ-PDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSY  119 (614)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy  119 (614)
                      .|..+-+-|-..|++-+.-+...|.|++... ++--.+.+.|.+.-+..|+.           ..|.-+=..|+-.++.-
T Consensus        49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-----------s~~~~vq~~Aa~AL~nL  117 (584)
T 3l6x_A           49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-----------HPKKEVHLGACGALKNI  117 (584)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-----------CSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-----------CCCHHHHHHHHHHHHHH
Confidence            3444444443333333444666777777532 22234566777766666654           34566778999999998


Q ss_pred             ccc-hHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHh
Q 047433          120 TMN-KVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVA  173 (614)
Q Consensus       120 ~~~-~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  173 (614)
                      +.. ..+.-..-+++|+||||++||+.--+..-|+.|+.||.+|++++..=..|.
T Consensus       118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~  172 (584)
T 3l6x_A          118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV  172 (584)
T ss_dssp             TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence            885 477777788999999999999954444458999999999999876655555

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=91.84  E-value=0.31  Score=52.40  Aligned_cols=96  Identities=20%  Similarity=0.161  Sum_probs=72.7

Q ss_pred             hHhhHHHHHhhcC-CCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQ-PDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -++..|+|++... |.-+....-|++..+..|+.           +.+.-|=..|+.+|+..+-...+..+..++.|+||
T Consensus       234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  302 (530)
T 1wa5_B          234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  302 (530)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence            4778888888765 44443334466666655542           34455677899999999888777778888999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      .|+++|... +|--+..|+++||++++..
T Consensus       303 ~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~  330 (530)
T 1wa5_B          303 RLVELLSHE-STLVQTPALRAVGNIVTGN  330 (530)
T ss_dssp             HHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHCCC-ChhhHHHHHHHHHHHHcCC
Confidence            999999854 6777889999999999764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=91.68  E-value=0.15  Score=54.58  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             hhhHHHHhhhCCCCCcccchhHhhHHHHHhhcCCCCC--CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhh
Q 047433           39 RAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDP--LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVI  116 (614)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~  116 (614)
                      ...|....+-|-..|.+.+..++..|-+++-..+++|  ++..-|++.-+..++..+          .+.-|=..|+.++
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----------~~~~v~~~A~~~L  142 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----------DFPQLQFEAAWAL  142 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----------CCHHHHHHHHHHH
Confidence            3456677777744444434556677777765554333  345557766666655322          2356677899999


Q ss_pred             hccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          117 GSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       117 gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      |...-...++....+++|+||+|+.+|... +.--++.|++|||.|+....
T Consensus       143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~  192 (528)
T 4b8j_A          143 TNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSP  192 (528)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCh
Confidence            999988889999999999999999999875 56678899999999987543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=91.30  E-value=0.26  Score=53.44  Aligned_cols=117  Identities=19%  Similarity=0.250  Sum_probs=82.0

Q ss_pred             HHHHhhhCCCCCcccchhHhhHHHHHhhcCCCCC--CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhcc
Q 047433           42 VASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDP--LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSY  119 (614)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy  119 (614)
                      |...-+.+-..|.+.+.-++..+.++--..++-|  +...-|++--.-.|+          .+..|.-|=+.||-+++..
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL----------~~~~~~~lq~~Aa~aL~ni  128 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----------GKTDCSPIQFESAWALTNI  128 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHT----------TCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHH----------CCCCCHHHHHHHHHHHHHH
Confidence            4444455544555545567777777754444433  455666655444443          3455666778999999988


Q ss_pred             ccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 047433          120 TMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTF  169 (614)
Q Consensus       120 ~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  169 (614)
                      .-...+....-|++|+||+|+++|+..=. --|+.|+.|||.||.....+
T Consensus       129 as~~~e~~~~vv~~GaIp~Lv~lL~s~~~-~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          129 ASGTSEQTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHH
Confidence            77778888888999999999999987544 44788999999999875544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=91.28  E-value=1.5  Score=47.72  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=79.5

Q ss_pred             HhhHHHHHhhcCCCCCCC-ccccHHHHHHHHHHhhcCCccccccC------Ccccchh-------hhhhhhhccccchHH
Q 047433           60 ALSGLWNIAMTQPDDPLF-PALGIFNCMSSLISKGVNNRDWLLRD------QNIYIPY-------YAAHVIGSYTMNKVE  125 (614)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~-~~lg~~~~~~~l~~~~~~~~~~~~~~------~~~~~~y-------y~ah~~gsy~~~~~~  125 (614)
                      +.-.|=|||-.+||+-+. -+.|+..++..+..--..=..|+...      |.=.+|-       .|+..||-..-+ ++
T Consensus       102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e  180 (458)
T 3nmz_A          102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE  180 (458)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence            555666999999998766 35567766665533332235677543      2223544       788888866665 66


Q ss_pred             HHHHHHhcCCchHHHHHhcc---------cchhhH-HHHHHHHhhhhhhcccchh-HHhhhHHHHHHHHHHH
Q 047433          126 FAEKAVKSGVIPPLMELLRG---------KISWVE-QRVAVRALGHLASYDRTFD-SVAVYEEEVVKLAMQL  186 (614)
Q Consensus       126 ~~~~av~~~~~~~l~~~~~~---------~~~wve-~r~~~r~l~h~a~~~~~f~-~~~~~~~~~~~~~~~~  186 (614)
                      +=..-++.|+||||+.||.-         .....+ ||-|+.+|.+|+..+..-. .|...+ .+|+.-+++
T Consensus       181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~-GaIp~LV~L  251 (458)
T 3nmz_A          181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-GCMRALVAQ  251 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH-HHHHHHHHG
T ss_pred             HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC-CcHHHHHHH
Confidence            76667789999999999941         112333 8999999999998775332 333333 444444443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=91.08  E-value=0.52  Score=48.52  Aligned_cols=97  Identities=20%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             hHhhHHHHHhhcC-CCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQ-PDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      .++..|+|++... |.-.....-|++..+..++.           +.+.-+=..|+..++..+-...+.....++.|+||
T Consensus       169 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  237 (450)
T 2jdq_A          169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR  237 (450)
T ss_dssp             HHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence            5788889988765 44332223566776666653           23445567888999998888777788888999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      +|+++|.. -.|--+..|+++||.+++...
T Consensus       238 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  266 (450)
T 2jdq_A          238 RLVELLMH-NDYKVVSPALRAVGNIVTGDD  266 (450)
T ss_dssp             HHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHCC-CchhHHHHHHHHHHHHhhCCh
Confidence            99999984 467778899999999998653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.38  E-value=1.1  Score=47.73  Aligned_cols=104  Identities=6%  Similarity=-0.099  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccH--HH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHC--KS  501 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~--KA  501 (614)
                      .+...|.-+++.|++++|+..|.+....+...  .....++.+...+++..++|..+....+++-.+-... .+..  +.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            56789999999999999999999999988753  5567889999999999999999999999987653221 1233  33


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ....|..+...++|.+|-..|..++....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            44557777888999999999999887643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=89.71  E-value=0.27  Score=52.94  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=77.9

Q ss_pred             hhhhHHHHhhhCCCCCcccchhHhhHHHHHhhcCCCCCC---CccccHHHHHHHHHHhhcCCccccccCCcccchhhhhh
Q 047433           38 RRAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDPL---FPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAH  114 (614)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah  114 (614)
                      .+..|..+++.|-..|.+.+..++..|-+++-. .++|.   +..-|++.-+..++    .+      +.+.-|=+.|+.
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~-~~~~~~~~~~~~g~i~~Lv~~L----~~------~~~~~v~~~A~~  153 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFM----RE------NQPEMLQLEAAW  153 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTT----ST------TSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CCCccHHHHHHCCCHHHHHHHh----CC------CCCHHHHHHHHH
Confidence            345577777777554433344455555555443 23332   33345444333322    22      126667789999


Q ss_pred             hhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          115 VIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       115 ~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      ++|...-...++...-+..|+||+|+++|+.. +.--++.|+++|++|++...
T Consensus       154 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~  205 (530)
T 1wa5_B          154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDST  205 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCc
Confidence            99998887788888888999999999999854 55568889999999998643

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=89.50  E-value=0.08  Score=54.27  Aligned_cols=123  Identities=20%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CCchhhhhhHHHHhhh-CCCC--------CcccchhHhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCccccccC
Q 047433           33 PNSSLRRAGVASFFKE-MPLQ--------DDQQHVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRD  103 (614)
Q Consensus        33 ~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~  103 (614)
                      +|+..|...+-..++. .|..        +.++.+.++.-|-+..-..++=-.|..+|.+.   .|+.       -|++.
T Consensus        24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~---~Lv~-------~lL~s   93 (296)
T 1xqr_A           24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMH---LLVG-------RYLEA   93 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH---HHHH-------TTTTC
T ss_pred             CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHH---HHHH-------HHHcC
Confidence            4566666666666664 3432        11223344444444433222222477788875   3443       24445


Q ss_pred             CcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 047433          104 QNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASY  165 (614)
Q Consensus       104 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~  165 (614)
                      .+--|=-+|+-+||.-.-+..+.....|+.|+||||+.||+---+=--+|-|+.||+-|+..
T Consensus        94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~  155 (296)
T 1xqr_A           94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE  155 (296)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence            66777789999999999899999999999999999999998321112378899999998753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=89.47  E-value=0.29  Score=50.42  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=58.1

Q ss_pred             cccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       100 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      ++++.+.-|-..|+.++|...-...++....++.|+||+|+.+|...-++--++.|+++|++|+.+.
T Consensus       115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4455677788899999999988888888888999999999999997677888999999999999765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=89.46  E-value=0.95  Score=47.74  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             hHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccch---HHHHHHHHhcC
Q 047433           59 LALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNK---VEFAEKAVKSG  134 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~---~~~~~~av~~~  134 (614)
                      -+...|+|++...|+. ..+.+.|++..+..++...         +.+--+-..|+.++|.-+.+.   +......+..|
T Consensus       285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~  355 (529)
T 1jdh_A          285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY  355 (529)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC
Confidence            4777888887653311 1234457777777776542         122345577899999887752   33555677899


Q ss_pred             CchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHh
Q 047433          135 VIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVA  173 (614)
Q Consensus       135 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  173 (614)
                      +||+|+.+|+..-+|--++.|+.+|+.++.....-..+.
T Consensus       356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  394 (529)
T 1jdh_A          356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR  394 (529)
T ss_dssp             CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHH
Confidence            999999999988789999999999999998766544443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.31  E-value=4.2  Score=41.51  Aligned_cols=60  Identities=17%  Similarity=0.098  Sum_probs=56.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+.+++.|+.++|++.....|+.+|.+     +.+..-+-+.+.-.|+|+.|...++.+.+++|.
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~d-----a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKD-----ASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            356789999999999999999999999     998888899999999999999999999999998

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=88.07  E-value=4.4  Score=38.28  Aligned_cols=87  Identities=14%  Similarity=-0.025  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhCCCCCc---chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433          440 EEAAMKYTEALGVCPSRPK---NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR  516 (614)
Q Consensus       440 eeAI~~YtkAIel~P~~~~---~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye  516 (614)
                      +.-++.|++|+..-|....   +-..-+|.+-| .+..++|.++|-..|+.++.+...   ..|.|.-.|+--...|+..
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKk---FAKiwi~~AqFEiRqgnl~  111 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKK---FAFVHISFAQFELSQGNVK  111 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTT---BHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHcccHH
Confidence            6777899999998876311   22345666666 446789999999999999999767   8999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 047433          517 ESLMDCIMFINGCI  530 (614)
Q Consensus       517 EAL~df~kALkl~P  530 (614)
                      .|.+-+.+++.++|
T Consensus       112 kARkILg~AiG~~~  125 (161)
T 4h7y_A          112 KSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccCC
Confidence            99999999999988

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=87.55  E-value=0.66  Score=50.27  Aligned_cols=103  Identities=21%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             hHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -+...|||+|...|+. -.+.+-|++.....|           +...+.-+=..|+..+|......+++....+++|+||
T Consensus       139 ~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~L-----------L~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~  207 (529)
T 3tpo_A          139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISL-----------LASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAID  207 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-----------TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-----------HcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH
Confidence            3677788888654432 134455655554444           4556777778999999999999999999999999999


Q ss_pred             HHHHHhcccc----hhhHHHHHHHHhhhhhhcccchhHH
Q 047433          138 PLMELLRGKI----SWVEQRVAVRALGHLASYDRTFDSV  172 (614)
Q Consensus       138 ~l~~~~~~~~----~wve~r~~~r~l~h~a~~~~~f~~~  172 (614)
                      ||+.+|...-    +---+|.|+.+|..++......+.+
T Consensus       208 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  246 (529)
T 3tpo_A          208 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  246 (529)
T ss_dssp             HHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH
T ss_pred             HHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH
Confidence            9999998542    2234788999999998877655544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=87.53  E-value=0.15  Score=53.55  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             HhhHHHHHhh---cCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCC
Q 047433           60 ALSGLWNIAM---TQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV  135 (614)
Q Consensus        60 ~~~~~~~~~~---~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  135 (614)
                      +...|||++.   ..|+. ..+.+-|++.....|+..           .+.-+=-.|+-+|+..+....+.....+++|+
T Consensus       238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  306 (354)
T 3nmw_A          238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-----------HSLTIVSNACGTLWNLSARNPKDQEALWDMGA  306 (354)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-----------CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence            4455666665   22221 123344555555555432           33346667888899888777788888899999


Q ss_pred             chHHHHHhcccchhhHHHHHHHHhhhhhhcccc
Q 047433          136 IPPLMELLRGKISWVEQRVAVRALGHLASYDRT  168 (614)
Q Consensus       136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~  168 (614)
                      ||||++||+.+-.-| ++.|+.||..|++....
T Consensus       307 i~~Lv~LL~s~~~~i-~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          307 VSMLKNLIHSKHKMI-AMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHTTTTCSSHHH-HHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHH-HHHHHHHHHHHHcCCHH
Confidence            999999998875544 89999999999987554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=86.78  E-value=1  Score=48.61  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=77.3

Q ss_pred             hhHhhHHHHHhhcCCCCC-CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCc
Q 047433           58 VLALSGLWNIAMTQPDDP-LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVI  136 (614)
Q Consensus        58 ~~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~  136 (614)
                      .-+...|+|+|...|+.- .+.+.|++.....|+           +..+.-|=..|+-.+|....+.+++....++.|+|
T Consensus       119 ~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL-----------~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i  187 (510)
T 3ul1_B          119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-----------ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI  187 (510)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-----------TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCh
Confidence            347888999986443221 234556655555543           45677788899999999999999999999999999


Q ss_pred             hHHHHHhcccc----hhhHHHHHHHHhhhhhhcccchhHHh
Q 047433          137 PPLMELLRGKI----SWVEQRVAVRALGHLASYDRTFDSVA  173 (614)
Q Consensus       137 ~~l~~~~~~~~----~wve~r~~~r~l~h~a~~~~~f~~~~  173 (614)
                      |||+.+|...-    +---+|.|+.+|..++......+.+.
T Consensus       188 ~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  228 (510)
T 3ul1_B          188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  228 (510)
T ss_dssp             HHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence            99999998532    23347889999999988776655443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=86.02  E-value=2.7  Score=48.98  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=81.8

Q ss_pred             CCcccchhHhhHHHHHhhc---CCCCCCCccccH---HHHHHHHHHhhc--------------------CCcccccc---
Q 047433           52 QDDQQHVLALSGLWNIAMT---QPDDPLFPALGI---FNCMSSLISKGV--------------------NNRDWLLR---  102 (614)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~---~p~~~~~~~lg~---~~~~~~l~~~~~--------------------~~~~~~~~---  102 (614)
                      .++.-+..++++||+++-.   .|..|.|-+-++   .....+|+..+-                    ..+..+..   
T Consensus       342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g  421 (810)
T 3now_A          342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA  421 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence            3333377899999999854   344566665333   444444444431                    11122222   


Q ss_pred             ----------CCcccchhhhhhhhhccccch----------------------------HHHH----HHHHhcCCchHHH
Q 047433          103 ----------DQNIYIPYYAAHVIGSYTMNK----------------------------VEFA----EKAVKSGVIPPLM  140 (614)
Q Consensus       103 ----------~~~~~~~yy~ah~~gsy~~~~----------------------------~~~~----~~av~~~~~~~l~  140 (614)
                                ..+.-|=|.|+.++|.-|-..                            .+|-    +.-+++|+||+|+
T Consensus       422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV  501 (810)
T 3now_A          422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC  501 (810)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence                      234557799999999877632                            1233    5567999999999


Q ss_pred             HHhcccchhhHHHHHHHHhhhhhhcccchhHHhhhHHHHHHHHHHH
Q 047433          141 ELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQL  186 (614)
Q Consensus       141 ~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~  186 (614)
                      .||+-.-. -=|.-|++||+.||+.+..=..|..++  +++.=+++
T Consensus       502 ~LL~s~s~-~vqe~Aa~aL~NLA~d~~~r~~Vv~~G--aip~Lv~L  544 (810)
T 3now_A          502 ALAKTESH-NSQELIARVLNAVCGLKELRGKVVQEG--GVKALLRM  544 (810)
T ss_dssp             HHHTCCCH-HHHHHHHHHHHHHHTSHHHHHHHHHTT--HHHHHHHH
T ss_pred             HHHcCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHH
Confidence            99985332 237789999999998765444555544  44444444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.95  E-value=10  Score=41.09  Aligned_cols=96  Identities=8%  Similarity=-0.125  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      .+...-+.+.+.|++++|...|.+..+.  .|+      ...|+-+-.+|.+.|++++|...+++..+..-.  ++...|
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~ty  178 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEPEL  178 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHHHH
Confidence            5667778888999999999999988765  354      788999999999999999999999998764321  247889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      .-+-.++...|+.++|...|++.-+.
T Consensus       179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          179 AALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=84.73  E-value=0.68  Score=48.84  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             chhHhhHHHHHhhcCCCCCC-CccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCC
Q 047433           57 HVLALSGLWNIAMTQPDDPL-FPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGV  135 (614)
Q Consensus        57 ~~~~~~~~~~~~~~~p~~~~-~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  135 (614)
                      +..++..|+|++...++..+ +-+.|++.-+..++.           +.+.-+=..++.+++..+...++....-++.|+
T Consensus       118 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----------~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~  186 (529)
T 1jdh_A          118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----------KTNVKFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            33588889998887654322 224566665555543           233445566777888888877888888889999


Q ss_pred             chHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHh
Q 047433          136 IPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVA  173 (614)
Q Consensus       136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  173 (614)
                      ||+|+++|+..-..+-+..|.++|..|++....=..+.
T Consensus       187 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  224 (529)
T 1jdh_A          187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV  224 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            99999999987777777789999999998665434433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.90  E-value=8  Score=41.46  Aligned_cols=106  Identities=13%  Similarity=-0.077  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCCCCc
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALG-VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC----LSNPPNS  497 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIe-l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe----LdP~~~~  497 (614)
                      +.--...+..++..|+|.+|......... ..-.....++..++.--...|+..++|..|....+++..    ..+....
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            33456678889999999999999887653 333334667888999999999999999999999988742    2222111


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFING  528 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl  528 (614)
                      ...-+...|..+...++|.+|-.+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            2334455688888999999999999999875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=82.89  E-value=52  Score=35.33  Aligned_cols=93  Identities=8%  Similarity=-0.172  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      ..|..-+....+.++.+.|-..|.+| . .|..    ....|...|..-...+ +++.|...+..+++..|+   .++.+
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~---~~~~~  357 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD---STLLK  357 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC---CHHHH
Confidence            34555566555677899999999999 4 4431    1556766676666666 699999999999998888   77766


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMF  525 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kA  525 (614)
                      ...+.-...+|+.+.|...|+++
T Consensus       358 ~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          358 EEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            66677778889999988888887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=82.88  E-value=6.6  Score=42.43  Aligned_cols=103  Identities=9%  Similarity=-0.166  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-----------------------------------chhHHHHHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-----------------------------------NERMVLYSNR  468 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-----------------------------------~~~a~lysNR  468 (614)
                      ..|..-+.-+...|+.+.|...|.+|+.. |.+..                                   .....+|.+.
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            35666677777788999999999999998 87510                                   0011234444


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC
Q 047433          469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG-LGRESLMDCIMFINGCIR  531 (614)
Q Consensus       469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG-~yeEAL~df~kALkl~P~  531 (614)
                      +....+.++.+.|...+.+| +..+.   ....|...|..-...+ +.+.|...|+.+++..|+
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNEGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTSCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCCCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence            44455677889999999999 43333   5667777777777677 599999999999998875

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.61  E-value=15  Score=35.64  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=69.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hcC--CCCC-------
Q 047433          428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL--CLS--NPPN-------  496 (614)
Q Consensus       428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL--eLd--P~~~-------  496 (614)
                      ..+-.+|-.|.|..|+-...   .+  +.     +...+-.+.||.++++|..|+...+..|  +.+  |+..       
T Consensus        38 L~~I~LyyngEY~R~Lf~L~---~l--NT-----~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLH---KL--NT-----CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH---TC--CB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             hhhhhhhhcchHhHHHHHHH---hc--ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            45677888898888776543   22  23     6777778999999999999999999999  333  3211       


Q ss_pred             ---ccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          497 ---SHCKS-LWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ---~~~KA-yyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                         ..-+- +.-.|..+..+|+-+||+..|.+.....|
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence               12233 33568899999999999999999999876

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.94  E-value=6.8  Score=40.01  Aligned_cols=58  Identities=10%  Similarity=-0.136  Sum_probs=54.6

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          470 QCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       470 ~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..+++.|+.++|+..+...++-+|.   +.+.-.-+.+.+.-.|+++.|.+.++.+.+++|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p   62 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFP   62 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3467889999999999999999999   999999999999999999999999999999977

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=80.89  E-value=6.7  Score=43.12  Aligned_cols=79  Identities=14%  Similarity=0.048  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      -+...|.-..-...+..|...|.+|+.+.|..     ...|+.+|......|+.-+|+-.|.++|....+   +..|.-+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-----G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P---f~~a~~n  225 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP---FPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC---CHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHhcccccHHHHHHHHHHHhcCCC---ChhHHHH
Confidence            46678888888889999999999999999999     999999999999999999999999999998887   8888888


Q ss_pred             HHHHHHH
Q 047433          505 RSQAYDM  511 (614)
Q Consensus       505 RA~Al~~  511 (614)
                      +...+..
T Consensus       226 L~~~f~~  232 (497)
T 1ya0_A          226 LQKALSK  232 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887765

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=80.83  E-value=1.5  Score=43.58  Aligned_cols=73  Identities=25%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             hhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhc-ccchhHHhhhHHHHHHHHHHH
Q 047433          111 YAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASY-DRTFDSVAVYEEEVVKLAMQL  186 (614)
Q Consensus       111 y~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~-~~~f~~~~~~~~~~~~~~~~~  186 (614)
                      .||-.|..-+.+..+--..-+++|+||||++||+-. +=.-|+.|+.||..|++. +..=.+|.+++  .|+.-+++
T Consensus        29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G--aI~~Lv~l  102 (233)
T 3tt9_A           29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELN--GVPRLLQV  102 (233)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcC--CHHHHHHH
Confidence            355555554544444444556899999999999874 445699999999999984 33334555544  34444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	614
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.002
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 5/232 (2%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
           LL D++  +   AA ++   +  +           ++  ++  ++        R     L
Sbjct: 25  LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 84

Query: 160 GHLASYDRTFDSVAVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRLKYHSDLLTRGV 219
            +L+ +       A+++   +   +++  + +D V    +         +  + +  R  
Sbjct: 85  HNLSHHREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 142

Query: 220 GGLEFENQKA---EEWACQLQCWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVN 276
           GGL+               +    L +L     + + + L     + L+++   +     
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202

Query: 277 HNSPAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLL 328
             + + V  +  +C S       A   Q +               +     L
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 11/162 (6%)

Query: 9   EKNIPTNNKRTCANPCCFFCTMEEPNSSLRRA-----GVASFFKEMPLQDDQQHVLALSG 63
            K   T      A            +   +       G+    + +   +        S 
Sbjct: 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354

Query: 64  LWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNK 123
           L N++       +            L S   N         +  I   A + + +   ++
Sbjct: 355 LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN------TSNSEDILSSACYTVRNLMASQ 408

Query: 124 VEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASY 165
            + A++   S ++  ++ L R   S      A   L  + S 
Sbjct: 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRAL 159
            L  Q+       A+ I           ++  + G I  L++LLR     V Q+ A  AL
Sbjct: 10  YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV-QQAAAGAL 68

Query: 160 GHLASYDRTFDSVAVYEEEVVKLAMQLASTC 190
            +L     T + +    +  ++ A+ L    
Sbjct: 69  RNLVFRSTT-NKLETRRQNGIREAVSLLRRT 98

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 22/198 (11%), Positives = 51/198 (25%), Gaps = 3/198 (1%)

Query: 128 EKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLA 187
           +  +++G+IP  +  L        Q  +  AL ++AS         V    +      LA
Sbjct: 50  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109

Query: 188 STCLDVVYVNFVAVKDRKKRLKYHSDLLTRGVG---GLEFENQKAEEWACQLQCWSLYLL 244
           S    +      A+ +         DL+ +       L                 +L   
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 169

Query: 245 NCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGRKNIAECKQ 304
               C+ ++     +  E ++          +    A               +     K+
Sbjct: 170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 229

Query: 305 VIENLCNLSRSSDDWQYM 322
            +         + +   +
Sbjct: 230 GVVPQLVKLLGATELPIV 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	614
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.75
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.33
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.83
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.64
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.57
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.35
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.73
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.27
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.12
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.09
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	85.7
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	84.54
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	84.51
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	83.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	83.07
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	83.03
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	82.56

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.76  E-value=9.1e-18  Score=155.05  Aligned_cols=125  Identities=20%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc----------chhHHHHHHHHHHHHHcCCcH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK----------NERMVLYSNRAQCHLLLREPD  479 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~----------~~~a~lysNRA~~ylkLGdye  479 (614)
                      .|+.++   +++.+..++++||.+|+.|+|.+|+..|++||.+.|....          .....+|.|+|.||+++|+|+
T Consensus         5 ~m~~~E---~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           5 EMDTKE---KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             GSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            566554   4568899999999999999999999999999998766421          236678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433          480 AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP  542 (614)
Q Consensus       480 eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~  542 (614)
                      +|+.+|+++|+++|+   +.++|+++|.+|..+|++++|+.+|.++++++|++  +.....+.
T Consensus        82 ~Ai~~~~~al~l~p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~  139 (168)
T d1kt1a1          82 KAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN--KAARLQIF  139 (168)
T ss_dssp             HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHH
T ss_pred             cchhhhhhhhhcccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Confidence            999999999999999   99999999999999999999999999999999964  34334443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.1e-18  Score=157.58  Aligned_cols=104  Identities=25%  Similarity=0.263  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..++++||.+|+.|+|++|+..|++||+++|.+     +.+|+|+|.||+++|+|++|+.+|++||+++|+   ++++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~---~~~a   74 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA   74 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC---cHHH
Confidence            35689999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      |+++|.+|..+|++++|+.+|++++++.|+..
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999987543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.75  E-value=1.4e-17  Score=152.01  Aligned_cols=117  Identities=23%  Similarity=0.188  Sum_probs=105.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-----------chhHHHHHHHHHHHHHcCCc
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-----------NERMVLYSNRAQCHLLLREP  478 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-----------~~~a~lysNRA~~ylkLGdy  478 (614)
                      .|++++   ++..+..++++||.+|+.|+|.+|+..|++||.+.|....           .....+|+|+|.||+++|+|
T Consensus         7 ~~~~~e---~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   83 (153)
T d2fbna1           7 DYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY   83 (153)
T ss_dssp             GCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhccc
Confidence            556554   4568899999999999999999999999999998876421           13456899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          479 DAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       479 eeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++|+.+|++||+++|.   ++++|+++|.+|..+|++++|+.+|+++++++|++
T Consensus        84 ~~Al~~~~~al~~~p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          84 PKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             chhhhhhhccccccch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999   99999999999999999999999999999999953

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-17  Score=152.36  Aligned_cols=125  Identities=21%  Similarity=0.199  Sum_probs=109.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc----------chhHHHHHHHHHHHHHcCCcH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK----------NERMVLYSNRAQCHLLLREPD  479 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~----------~~~a~lysNRA~~ylkLGdye  479 (614)
                      .|+.++   +++.+..++++||.+|+.|+|++|+..|++||.+.|....          .....+|.|+|.||+++|+|+
T Consensus         3 ~~~~~e---k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~   79 (170)
T d1p5qa1           3 EMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS   79 (170)
T ss_dssp             GCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcc
Confidence            566554   3458999999999999999999999999999999887522          345678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433          480 AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP  542 (614)
Q Consensus       480 eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~  542 (614)
                      +|+.++++||+++|+   ++++|+++|.+|..+|++++|+.+|+++++++|+  ++.....+.
T Consensus        80 ~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~--n~~~~~~l~  137 (170)
T d1p5qa1          80 AAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLA  137 (170)
T ss_dssp             HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHH
T ss_pred             cccchhhhhhhcccc---chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence            999999999999999   9999999999999999999999999999999995  444333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-17  Score=149.28  Aligned_cols=105  Identities=26%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      ++.|..++.+||.+|+.|+|++|+..|+++|+++|++     +.+|.|+|.||+.+|++++|+.++++||+++|.   +.
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~---~~   78 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YI   78 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh-----hhhhhhhHHHHHhccccchHHHHHHHHHHHccc---ch
Confidence            4588899999999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ++|+++|.++..+|++++|+.+|++++++.|++
T Consensus        79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999853

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-17  Score=145.48  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..++++||.+|+.|+|++|+..|+++|+++|.+     +.+|.|+|.||.++|++++|+.+++++++++|+   ++.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   73 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKG   73 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----hhhhhcccccccccccccccchhhhhHHHhccc---hhhH
Confidence            35678999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      |+++|.++..+|++++|+.+|+++++++|++
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999963

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.9e-16  Score=143.40  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------CcchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433          418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-----------PKNERMVLYSNRAQCHLLLREPDAAISDAT  486 (614)
Q Consensus       418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-----------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~  486 (614)
                      .....+..++..|+.+|..|+|++|+..|++||++.+..           .......++.|||.||+++|+|++||.+|+
T Consensus        22 ~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~  101 (169)
T d1ihga1          22 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  101 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhh
Confidence            344567789999999999999999999999999764431           123457899999999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      +||+++|+   ++++|+++|.+|..+|++++|+.+|++++++.|++
T Consensus       102 ~al~~~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         102 EALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            99999999   99999999999999999999999999999999853

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=135.12  Aligned_cols=104  Identities=12%  Similarity=0.055  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc----
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS----  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~----  497 (614)
                      .|..+++.|+.+|..|+|++|+..|+++|+++|++     +.++.|+|.||.++|+|++|+.+|++||+++|....    
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            57789999999999999999999999999999999     999999999999999999999999999999987211    


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                      ..++|+++|.++..++++++|+..|++++...|
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            136888999999999999999999999999876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-14  Score=138.43  Aligned_cols=297  Identities=13%  Similarity=-0.010  Sum_probs=190.3

Q ss_pred             Hhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhc--------
Q 047433          288 ILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSL--------  357 (614)
Q Consensus       288 ~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~L--------  357 (614)
                      -.|+...|+  +|+..++++|+..|+.+     ..+..++.++.-+++.+.+...+..+....+........        
T Consensus        40 a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (388)
T d1w3ba_          40 SSIHFQCRRLDRSAHFSTLAIKQNPLLA-----EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA  114 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            346777887  89999999999999887     677888888888898888777776665544332222100        


Q ss_pred             cCCCcCcHHHHHHHHH--------------------------Hhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047433          358 LDRPKNLGEAITRALL--------------------------LDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMM  410 (614)
Q Consensus       358 g~~~k~lGe~it~aLl--------------------------~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~  410 (614)
                      ... ............                          ..+..... .|.+......+....... ...+...  .
T Consensus       115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~--~  190 (388)
T d1w3ba_         115 GDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAI--H  190 (388)
T ss_dssp             SCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHH--H
T ss_pred             ccc-cccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc-CcHHHHH--H
Confidence            000 000000000000                          00000000 223333333222221100 0000000  0


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433          411 MSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC  490 (614)
Q Consensus       411 ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe  490 (614)
                      .....+...+..+..+...|..++..|+|++|+..|.+++.+.|..     ...+.++|.++.++|++++|+..++++++
T Consensus       191 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~  265 (388)
T d1w3ba_         191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1111111222345678888999999999999999999999999988     89999999999999999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          491 LSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       491 LdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      ++|+   +..+++.+|.++..+|++++|+..|++++...|.....  ...+. ......++.-++...|.+++...+..+
T Consensus       266 ~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         266 LQPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS--LNNLA-NIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             TCSS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH--HHHHH-HHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh--hhHHH-HHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999   99999999999999999999999999999998853321  11111 112222333456677777777665544


Q ss_pred             CCCccCCcCCcccchhhhHHHHHHHHHHhccccc
Q 047433          571 VNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLI  604 (614)
Q Consensus       571 ~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~  604 (614)
                      .............|..+++...+.+++..+|++.
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4444444455667778888888888998888754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.4e-14  Score=138.97  Aligned_cols=106  Identities=19%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+...|..++..|++++|+..|++++...|++     +.+|.++|.+|.++|++++|+..++++++++|+   +..+|
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~  243 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSR  243 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccccccc-----ccchhhhhhcccccccchhHHHHHHHHHHHhhc---cHHHH
Confidence            4467889999999999999999999999999999     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433          503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS  536 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~  536 (614)
                      +.+|.+|..+|++++|+..|++++++.|++..+.
T Consensus       244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            9999999999999999999999999999766544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.7e-13  Score=129.68  Aligned_cols=102  Identities=17%  Similarity=0.065  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+..+|..++..|+|++|+..|+++|+++|++     +.+|+++|.+|.++|++++|+.+++++++++|+   +..+
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a  107 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYA  107 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh---hhhh
Confidence            57789999999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ++++|.++..+|++++|+..|+++++..|+
T Consensus       108 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999885

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.50  E-value=1e-13  Score=125.76  Aligned_cols=113  Identities=21%  Similarity=0.190  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-------NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-------~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~  494 (614)
                      .+-....+|+..|..|+|++|+..|++||+++|....       ...+.+|+|+|.||.++|+|++|+.+++++|++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            4556777899999999999999999999999987532       124689999999999999999999999999987552


Q ss_pred             C--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433          495 P--------NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       495 ~--------~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      .        +...++|+++|.+|..+|++++|+.+|++++++.|...+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            1        124678999999999999999999999999999775443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.6e-13  Score=126.85  Aligned_cols=101  Identities=11%  Similarity=-0.043  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..++++|..++..|+|++|++.|++   +.|.+     +.+++|+|.+|+.+|+|++|+.+|++||++||+   ++.+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~-----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a   72 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPH-----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVA   72 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCC-----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhh
Confidence            455788999999999999999999986   35556     789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      |+++|.++..+|++++|+.+|+++++..+++.
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            99999999999999999999999999877543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-12  Score=126.51  Aligned_cols=104  Identities=19%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+...|..++..|++.+|+..|.+++...|..     ...+.+++.++.++|++++|+..++++++++|+   +..+
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  341 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAA  341 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---CHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-----chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            34567888999999999999999999999999998     899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999988543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-13  Score=137.40  Aligned_cols=185  Identities=9%  Similarity=-0.033  Sum_probs=132.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433          410 MMSEEKVEEMRVLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA  488 (614)
Q Consensus       410 ~ls~eel~~~~~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A  488 (614)
                      .....-+..++.....|..+|+.+...| ++++|+..|+++|+++|++     ..+|.+||.++.++|++++|+.+++++
T Consensus        64 ~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-----~~a~~~~~~~~~~l~~~~eAl~~~~ka  138 (315)
T d2h6fa1          64 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDPSQELEFIADI  138 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-----hhHHHHHhHHHHhhccHHHHHHHHhhh
Confidence            5555666667778889999999999876 5999999999999999999     999999999999999999999999999


Q ss_pred             HhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHH-----HHHHHHHHHHHhhhh
Q 047433          489 LCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARM-----ISKHMNALWVFGGAR  563 (614)
Q Consensus       489 LeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~-----i~Kqmea~~lF~~Ai  563 (614)
                      ++++|.   +..+|+.+|.++..+|++++|+.+|+++++++|.+..+-.+...  ...++     ...-.++...+..++
T Consensus       139 l~~dp~---n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~--~l~~~~~~~~~~~~~~ai~~~~~al  213 (315)
T d2h6fa1         139 LNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF--VISNTTGYNDRAVLEREVQYTLEMI  213 (315)
T ss_dssp             HHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH--HHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred             hhhhhc---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH--HHHHccccchhhhhHHhHHHHHHHH
Confidence            999999   99999999999999999999999999999998854433211111  00000     001123444555666


Q ss_pred             hcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccccC
Q 047433          564 SKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLIS  605 (614)
Q Consensus       564 ~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~~  605 (614)
                      ...+..+.............+. .+..+...+++..+|+..+
T Consensus       214 ~~~P~~~~~~~~l~~ll~~~~~-~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         214 KLVPHNESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             HHSTTCHHHHHHHHHHHTTTCG-GGCHHHHHHHHHHTTTCCC
T ss_pred             HhCCCchHHHHHHHHHHHhcCh-HHHHHHHHHHHHhCCCcCC
Confidence            6654433333333333333332 3445555556666666543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.43  E-value=4.8e-13  Score=115.46  Aligned_cols=94  Identities=13%  Similarity=0.051  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      ...+.|..+++.|++++|+..|+++|..+|++     +.+|.++|.++.++|++++|+.++++|++++|+   +..+++.
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~   89 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAA   89 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-----chhhhhhhhhhhhhhhHHHhhcccccccccccc---cccchHH
Confidence            35678999999999999999999999999999     999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 047433          505 RSQAYDMKGLGRESLMDCIMFI  526 (614)
Q Consensus       505 RA~Al~~LG~yeEAL~df~kAL  526 (614)
                      +|.+|..+|++++|++.++++|
T Consensus        90 la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          90 LAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999986

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.9e-13  Score=137.71  Aligned_cols=147  Identities=9%  Similarity=-0.062  Sum_probs=107.3

Q ss_pred             hhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047433          375 DYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC  453 (614)
Q Consensus       375 dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~  453 (614)
                      .|.+... +|.+..+......+........+.+.  .....-+...++....+..+|..+...|++++|+..|+++|+++
T Consensus        65 ~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal--~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d  142 (315)
T d2h6fa1          65 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM--NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD  142 (315)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHH--HHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh
Confidence            3444333 66666665555544331100012222  33334445556677888888888888888888888888888888


Q ss_pred             CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH
Q 047433          454 PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL------GRESLMDCIMFIN  527 (614)
Q Consensus       454 P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~------yeEAL~df~kALk  527 (614)
                      |.+     ..+|+|||.++.++|++++|+.+++++|+++|.   +..+|+.||.++..++.      +++|+..+.++++
T Consensus       143 p~n-----~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~---n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~  214 (315)
T d2h6fa1         143 AKN-----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR---NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK  214 (315)
T ss_dssp             TTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             hcc-----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc---cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH
Confidence            888     888888888888888888888888888888888   88888888888888776      5788888888888


Q ss_pred             cCCC
Q 047433          528 GCIR  531 (614)
Q Consensus       528 l~P~  531 (614)
                      +.|+
T Consensus       215 ~~P~  218 (315)
T d2h6fa1         215 LVPH  218 (315)
T ss_dssp             HSTT
T ss_pred             hCCC
Confidence            8885

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-12  Score=125.76  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433          426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR  505 (614)
Q Consensus       426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR  505 (614)
                      ..++|..+++.|+|++|+..|+++|+.+|++     +.+|.++|.+|..+|++++|+..++++++++|+   +..+++.+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l   93 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMAL   93 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---cccccccc
Confidence            4578999999999999999999999999999     999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          506 SQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       506 A~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      |.+|..+|++++|+..+++++...|..
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccccccccchhhHHHhccch
Confidence            999999999999999999999998864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.9e-12  Score=118.97  Aligned_cols=104  Identities=16%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc-----
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS-----  497 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~-----  497 (614)
                      +..+.+.|+.++..|+|++|+..|++||+++|++     +.+|.|||.+|.++|+|++|+.+|++|+...|....     
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-----~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-----hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            3468899999999999999999999999999999     999999999999999999999999999987665210     


Q ss_pred             --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          498 --------HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       498 --------~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                              ..++++++|.++..+|++++|+..|.+++++.|.
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                    2588999999999999999999999999999884

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-12  Score=114.32  Aligned_cols=101  Identities=7%  Similarity=-0.054  Sum_probs=89.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL---REPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL---GdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      -+..|.+...+++++|.+.|.++|.++|.+     +.+++|+|.|+++.   +++++||..++++++.+|. +....++|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-----~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-chHHHHHH
Confidence            356788899999999999999999999999     99999999999975   4566799999999999986 11356999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      .+|.+|..+|++++|+..|+++++++|++.
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            999999999999999999999999999643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=9.6e-11  Score=110.38  Aligned_cols=125  Identities=11%  Similarity=-0.115  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR  516 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye  516 (614)
                      .+++.|+..+++++...+. .....+.+|+++|.+|..+|+|++|+.++++||+++|+   ++.+|+++|.+|..+|+++
T Consensus        13 ~~~e~al~~~~e~l~~~~~-~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~g~~~   88 (259)
T d1xnfa_          13 LQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFD   88 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHhhhchHHHHHHHHH
Confidence            4577899999999886554 24567899999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433          517 ESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS  568 (614)
Q Consensus       517 EAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~  568 (614)
                      +|+.+|+++++++|++.+..  ..+. .+....++...+...|..++...+.
T Consensus        89 ~A~~~~~~al~~~p~~~~a~--~~lg-~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          89 AAYEAFDSVLELDPTYNYAH--LNRG-IALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHHHHCTTCTHHH--HHHH-HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhhhhhhHHHHHHhhhhhhH--HHHH-HHHHHHhhHHHHHHHHHHHHhhccc
Confidence            99999999999999755432  2222 1122234445566677777766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=1.7e-11  Score=110.66  Aligned_cols=92  Identities=12%  Similarity=0.017  Sum_probs=83.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----------REPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----------GdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +-+.+.|++|+..|++||+++|++     +.+++|+|.++..+          +.+++||..+++||+++|+   +..+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~-----~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---~~~a~   78 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcc-----hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---hhHHH
Confidence            344567999999999999999999     99999999999865          4568999999999999999   99999


Q ss_pred             HHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCC
Q 047433          503 WRRSQAYDMKGL-----------GRESLMDCIMFINGCIRS  532 (614)
Q Consensus       503 yRRA~Al~~LG~-----------yeEAL~df~kALkl~P~~  532 (614)
                      +++|.+|..+|+           |++|+..|+++++++|++
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            999999998864           799999999999999953

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-10  Score=97.80  Aligned_cols=87  Identities=9%  Similarity=-0.045  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      +...+.|+.+++.|+|.+|+..|++|+++.|..  .....+.++.|+|.||.++|+|++|+..+++||+++|+   +..+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~---~~~a   82 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC---CHHH
Confidence            356789999999999999999999999997754  23456899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcC
Q 047433          502 LWRRSQAYDMKG  513 (614)
Q Consensus       502 yyRRA~Al~~LG  513 (614)
                      +.+++.....++
T Consensus        83 ~~Nl~~~~~~l~   94 (95)
T d1tjca_          83 NGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999887766553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=2e-09  Score=97.82  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      .+..+..+.++|..+++.|+|++||..|+++|+++|.+     +.+|.++|.+|..+|+|++|+.++.+|++++|+   +
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~---n  144 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN-----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---D  144 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh-----hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence            34567788899999999999999999999999999999     999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHH
Q 047433          499 CKSLWRRSQAYDMKGLGRESL  519 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL  519 (614)
                      ..++..++.+...+....++.
T Consensus       145 ~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         145 KAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888777666553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=2.2e-09  Score=100.41  Aligned_cols=103  Identities=13%  Similarity=0.041  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-----------------cchhHHHHHHHHHHHHHcCCcHHHHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-----------------KNERMVLYSNRAQCHLLLREPDAAISD  484 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-----------------~~~~a~lysNRA~~ylkLGdyeeAI~D  484 (614)
                      ....+...|+.++..|++++|+..|++||.+.+...                 ......++.+++.++.++|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            556899999999999999999999999999987641                 123557899999999999999999999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433          485 ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN  527 (614)
Q Consensus       485 ~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk  527 (614)
                      ++++++++|.   +..+|..++.+|..+|++.+|+..|+++.+
T Consensus        90 ~~~al~~~P~---~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          90 LEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999954

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.2e-10  Score=119.16  Aligned_cols=214  Identities=7%  Similarity=-0.127  Sum_probs=119.7

Q ss_pred             chhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHH
Q 047433          295 GRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLL  374 (614)
Q Consensus       295 ~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~  374 (614)
                      |=+|+..+++|++.-|+++     -.++.++.++...++-...   +++++..-+++++.......   +....-.....
T Consensus         2 ~~eA~q~~~qA~~l~p~~a-----~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~---Lw~~~y~~~ie   70 (497)
T d1ya0a1           2 SLQSAQYLRQAEVLKADMT-----DSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD---LWNHAFKNQIT   70 (497)
T ss_dssp             HHHHHHHHHHHHHHHGGGT-----CSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHH---HHHHHTHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCH-----HHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHH---HHHHHHHHHHH
Confidence            4578999999999999999     6778888888877665544   56666666666555311100   00000001111


Q ss_pred             hhhhhhh---ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433          375 DYKLTEQ---KFKNKKVQKALEEIWELKVERRKREKMMMMS--EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEA  449 (614)
Q Consensus       375 dy~~~~~---~p~n~e~~~aL~el~~lkvEr~erEk~~~ls--~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkA  449 (614)
                      .++....   .+........+.......  ..-.+.  .+.  .......+..+..+...|..+.+.|++++|+..|.++
T Consensus        71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a--~~~Y~~--ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  146 (497)
T d1ya0a1          71 TLQGQAKNRANPNRSEVQANLSLFLEAA--SGFYTQ--LLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS  146 (497)
T ss_dssp             HHHHHHSCSSCTTTTHHHHHHHHHHHHH--HHHHHH--HHHHHTC-------------------------------CCHH
T ss_pred             HHHHhcccccCccHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH
Confidence            2222111   122222222111111100  000011  000  0001123445667889999999999999999999999


Q ss_pred             HhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          450 LGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       450 Iel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      +.++|       ..++.|+|.++..+|+|++|+..|.+|++++|+   +..+|+++|.++...|++.+|+..|.+++...
T Consensus       147 l~~~~-------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         147 CSYIC-------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             hCCCH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            99877       568899999999999999999999999999999   99999999999999999999999999999998


Q ss_pred             CCCC
Q 047433          530 IRSE  533 (614)
Q Consensus       530 P~~~  533 (614)
                      |...
T Consensus       217 ~~~~  220 (497)
T d1ya0a1         217 FPFP  220 (497)
T ss_dssp             BCCH
T ss_pred             CCCH
Confidence            7543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.92  E-value=8.6e-09  Score=93.87  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS  501 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA  501 (614)
                      .+..+.+.|..+++.|+|.+|+..|+++|.++|.+     ..+|.++|.||..+|+|++|+.++.++++++|+   +..+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~-----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~---n~~~  134 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---NKAA  134 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            44567789999999999999999999999999999     999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHH
Q 047433          502 LWRRSQAYDMKGLGRE  517 (614)
Q Consensus       502 yyRRA~Al~~LG~yeE  517 (614)
                      +..++.+...++.+.+
T Consensus       135 ~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         135 RLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHH
Confidence            9999988877776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-09  Score=91.63  Aligned_cols=81  Identities=12%  Similarity=-0.036  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|+.++..|+|++|+..|+++|+++|.+     +.+|.|+|.++..+|+|++|+.+++++++++|+   +..
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~---~~~  106 (117)
T d1elwa_          35 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---NPQ  106 (117)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHH
T ss_pred             cchhhhhcccccccccccccccchhhhhHHHhccch-----hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Confidence            355689999999999999999999999999999999     999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHH
Q 047433          501 SLWRRSQAY  509 (614)
Q Consensus       501 AyyRRA~Al  509 (614)
                      ++..++.+.
T Consensus       107 ~~~~l~~l~  115 (117)
T d1elwa_         107 LKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888887764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.6e-08  Score=92.47  Aligned_cols=89  Identities=15%  Similarity=0.007  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+.+.|..+++.|+|++|+..|+++|.++|++     +.++.++|.||..+|+|++|+.++.+|++++|+   +..+.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~---n~~~~  133 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAK  133 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccc-----hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHHHH
Confidence            4457789999999999999999999999999999     999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHH
Q 047433          503 WRRSQAYDMKGLGRESL  519 (614)
Q Consensus       503 yRRA~Al~~LG~yeEAL  519 (614)
                      ..++.++..++...+..
T Consensus       134 ~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         134 TQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988877766554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1e-08  Score=91.84  Aligned_cols=92  Identities=11%  Similarity=0.002  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433          421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK  500 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K  500 (614)
                      ..+..+...|..++..|++++|+..|.++|+++|.+     ..+|.++|.+|..+|+|++|+.+++++++++|+   +..
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-----~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~---~~~  113 (159)
T d1a17a_          42 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-----IKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKD  113 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHH
T ss_pred             hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHH
Confidence            356689999999999999999999999999999999     999999999999999999999999999999999   888


Q ss_pred             HHHHHHHHHHH--cCCHHHHHH
Q 047433          501 SLWRRSQAYDM--KGLGRESLM  520 (614)
Q Consensus       501 AyyRRA~Al~~--LG~yeEAL~  520 (614)
                      ++..++.+...  .+.+++|+.
T Consensus       114 ~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         114 AKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            88877766543  333444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.82  E-value=9.2e-09  Score=92.56  Aligned_cols=83  Identities=7%  Similarity=-0.075  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      +..+.+.|..+++.|+|++|+..|+++|+++|.+     ..+|.++|.+|..+|+|++|+.++.++++++|+   +..+.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~-----~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---n~~~~  138 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-----VKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIR  138 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchh-----hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            4467789999999999999999999999999999     999999999999999999999999999999999   99998


Q ss_pred             HHHHHHHHHcC
Q 047433          503 WRRSQAYDMKG  513 (614)
Q Consensus       503 yRRA~Al~~LG  513 (614)
                      ..++.+...+.
T Consensus       139 ~~l~~~~~kl~  149 (153)
T d2fbna1         139 NSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1e-08  Score=92.82  Aligned_cols=99  Identities=13%  Similarity=-0.028  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI  541 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl  541 (614)
                      +.-+.+.|..|++.|+|++|+..|++||+++|.   ++.+|+.+|.+|..+|++++|+.+|+++++++|+...+.  ..+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~--~~l   78 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH--FFL   78 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH--HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHH--HHH
Confidence            567889999999999999999999999999999   999999999999999999999999999999999644332  222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433          542 PYYAARMISKHMNALWVFGGARSKI  566 (614)
Q Consensus       542 ~~y~~r~i~Kqmea~~lF~~Ai~k~  566 (614)
                      . .+...+++..++...|..++...
T Consensus        79 g-~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          79 G-QCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             H-HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHCCCHHHHHHHHHHHHHhC
Confidence            2 22223344445566677776654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.3e-08  Score=88.81  Aligned_cols=71  Identities=13%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT  535 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~  535 (614)
                      +..+-++|.+++..|+|++|+..|+++|+++|+   +..+++++|.+|..+|+|++|+.+|+++++++|+....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            567889999999999999999999999999999   99999999999999999999999999999998865543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=3.4e-08  Score=97.46  Aligned_cols=173  Identities=7%  Similarity=-0.110  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCcchhHHHH-HHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433          419 MRVLVGLIKQEAKHLFWLG--EIEEAAMKYTEALGVCPSRPKNERMVLY-SNRAQCHLLLREPDAAISDATRALCLSNPP  495 (614)
Q Consensus       419 ~~~~A~~lK~~GN~lFk~G--dyeeAI~~YtkAIel~P~~~~~~~a~ly-sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~  495 (614)
                      .++....+...|..+...+  ++++|+..+.++++++|..     ..++ .+++.++...+++++|+..++++++++|. 
T Consensus       103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-  176 (334)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-  176 (334)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-
T ss_pred             CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-
Confidence            3445556777777766655  5899999999999999987     6654 57788998999999999999999999999 


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHH------------------------------HHHHHHcCCCCCChHhhcchHHHH
Q 047433          496 NSHCKSLWRRSQAYDMKGLGRESLMD------------------------------CIMFINGCIRSETTSKRVKIPYYA  545 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~LG~yeEAL~d------------------------------f~kALkl~P~~~D~~~k~kl~~y~  545 (614)
                        +..+|+.+|.++..+|++++|+..                              |.+++...|......  ..+. ..
T Consensus       177 --~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~--~~l~-~~  251 (334)
T d1dcea1         177 --NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC--ELSV-EK  251 (334)
T ss_dssp             --CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC--CCCH-HH
T ss_pred             --CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHH--HHHH-HH
Confidence              999999999999998887654433                              344444444322211  1111 22


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhccc
Q 047433          546 ARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKN  602 (614)
Q Consensus       546 ~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~  602 (614)
                      ....++..++...|.+++..++................+..+++.+.+.+++..+|+
T Consensus       252 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            233444445555555555444333333333333445677788888888888888885

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=4.5e-07  Score=88.40  Aligned_cols=213  Identities=10%  Similarity=-0.060  Sum_probs=136.2

Q ss_pred             CcchhHHHHhhhcccchhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccC
Q 047433          280 PAGVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLD  359 (614)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~  359 (614)
                      ..|.|++..|+.+..+|     ++++++...            .++.+....++.+.+...+.+++....      ++++
T Consensus        16 ~~~~~~~~~~~~~~~~~-----~~~Aa~~y~------------~aa~~y~~~~~~~~A~~~y~kA~~~~~------~~~~   72 (290)
T d1qqea_          16 VPSSGFMKLFSGSDSYK-----FEEAADLCV------------QAATIYRLRKELNLAGDSFLKAADYQK------KAGN   72 (290)
T ss_dssp             SCCCTHHHHHSCCSHHH-----HHHHHHHHH------------HHHHHHHHTTCTHHHHHHHHHHHHHHH------HTTC
T ss_pred             CcchhHHHHhcCCcccc-----HHHHHHHHH------------HHHHHHHHCcCHHHHHHHHHHHHHHHH------HcCC
Confidence            34558888888666665     445554433            335677788888888888888876643      1222


Q ss_pred             CCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-cCC
Q 047433          360 RPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFW-LGE  438 (614)
Q Consensus       360 ~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk-~Gd  438 (614)
                      . ...+..+...- ..|...   ..-.++...+.+..++..         ...     .....+..+...|..++. .|+
T Consensus        73 ~-~~~a~~~~~~g-~~y~~~---~~~~~A~~~~~~a~~~~~---------~~~-----~~~~~~~~~~~l~~~~~~~~~~  133 (290)
T d1qqea_          73 E-DEAGNTYVEAY-KCFKSG---GNSVNAVDSLENAIQIFT---------HRG-----QFRRGANFKFELGEILENDLHD  133 (290)
T ss_dssp             H-HHHHHHHHHHH-HHHHHT---TCHHHHHHHHHHHHHHHH---------HTT-----CHHHHHHHHHHHHHHHHHTTCC
T ss_pred             C-HHHHHHHHHHH-HHHHHh---CCcHHHHHHHHHhhHHhh---------hcc-----cchhHHHHHHHHHHhHhhHHHH
Confidence            2 22222222221 233221   112222223333222220         010     111245678888888876 599


Q ss_pred             HHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc---c-HHHHHHHHHHHHHcC
Q 047433          439 IEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS---H-CKSLWRRSQAYDMKG  513 (614)
Q Consensus       439 yeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~---~-~KAyyRRA~Al~~LG  513 (614)
                      |++|+..|.+|+++.+.. .......++.|+|.+|.++|+|++|+..+.+++.+.|..+.   . ...+++.|.++...|
T Consensus       134 ~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (290)
T d1qqea_         134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT  213 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhc
Confidence            999999999999986543 23445778999999999999999999999999999887421   1 245678899999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCC
Q 047433          514 LGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       514 ~yeEAL~df~kALkl~P~~~D  534 (614)
                      +++.|...+.++++.+|...+
T Consensus       214 d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         214 DAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             CHHHHHHHHHGGGCC------
T ss_pred             cHHHHHHHHHHHHHhCCCccc
Confidence            999999999999999886544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.3e-07  Score=93.09  Aligned_cols=96  Identities=8%  Similarity=-0.196  Sum_probs=78.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCc----------------------------
Q 047433          427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREP----------------------------  478 (614)
Q Consensus       427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdy----------------------------  478 (614)
                      ...|..+...+.+++|+..|+++|+++|.+     ..+|.|||.++.++|++                            
T Consensus       148 ~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-----~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  222 (334)
T d1dcea1         148 YRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD  222 (334)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhc
Confidence            456777777888888888888888888888     88888888887776554                            


Q ss_pred             ------------------------------------HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433          479 ------------------------------------DAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC  522 (614)
Q Consensus       479 ------------------------------------eeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df  522 (614)
                                                          .+|+..+.++++.+|.   +..+++.+|.++..+|++++|+..|
T Consensus       223 ~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         223 PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW---CLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch---HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                                4455556666666666   7889999999999999999999999


Q ss_pred             HHHHHcCC
Q 047433          523 IMFINGCI  530 (614)
Q Consensus       523 ~kALkl~P  530 (614)
                      +++++++|
T Consensus       300 ~~ai~ldP  307 (334)
T d1dcea1         300 STLKAVDP  307 (334)
T ss_dssp             HHHHHHCG
T ss_pred             HHHHHHCc
Confidence            99999977

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.67  E-value=9.7e-08  Score=81.39  Aligned_cols=68  Identities=4%  Similarity=-0.237  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..+.++|.++++.|++++|+..++++++++|+   ++.+|+.+|.++..+|++++|+.+|+++++++|+..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            34678999999999999999999999999999   999999999999999999999999999999999643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=5.6e-08  Score=94.99  Aligned_cols=113  Identities=10%  Similarity=-0.018  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---c
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---S  497 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---~  497 (614)
                      .++.+.+.|+.+...|+|++|+..|.+|+++.+.. .+...+.+|.|.|.||.++|++++|+..+++++++.+...   .
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            46678889999999999999999999999985432 2344578999999999999999999999999999876521   1


Q ss_pred             cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCC
Q 047433          498 HCKSLWRRSQAYDM-KGLGRESLMDCIMFINGCIRSET  534 (614)
Q Consensus       498 ~~KAyyRRA~Al~~-LG~yeEAL~df~kALkl~P~~~D  534 (614)
                      ...++.++|.++.. +|++++|+..|++++++.+...+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            26788899998865 69999999999999998664443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.2e-07  Score=89.45  Aligned_cols=110  Identities=14%  Similarity=-0.049  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Ccc
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NSH  498 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~~  498 (614)
                      .++....+|..++..|++++|+..|+++|+..|.+.......++.++|.+|..+|++++|+..+.+++++.+..   ...
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            45556667999999999999999999999999987666677899999999999999999999999999986542   113


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR  531 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~  531 (614)
                      ..+++.++.++...|++.+|...+.+++.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            578889999999999999999999999987553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=3.6e-06  Score=78.97  Aligned_cols=105  Identities=13%  Similarity=-0.060  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL------SNPP  495 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL------dP~~  495 (614)
                      .+..+...|..+...|++++|+..|.+++...|.. .......+.|+|.+|+.+|++++|+..+++++.+      .|. 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-  289 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD-  289 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH-
Confidence            45567788999999999999999999999998875 5566778899999999999999999999999854      455 


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433          496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       496 ~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P  530 (614)
                        ...+++.+|.+|..+|++++|+..|++++++.+
T Consensus       290 --~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         290 --LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence              788999999999999999999999999999854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=5.4e-08  Score=87.15  Aligned_cols=76  Identities=18%  Similarity=0.009  Sum_probs=65.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-----------PDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-----------yeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      .+.+++|+..|++||+++|++     +.+|.|+|.+|..+|+           |++|+..+++|++++|+   +..++..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~-----~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~---~~~~~~~  125 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD---NTHYLKS  125 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchh-----hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC---HHHHHHH
Confidence            345689999999999999999     9999999999998764           79999999999999999   8888877


Q ss_pred             HHHHHHHcCCHHHHH
Q 047433          505 RSQAYDMKGLGRESL  519 (614)
Q Consensus       505 RA~Al~~LG~yeEAL  519 (614)
                      ++.+....+.+.++.
T Consensus       126 L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1         126 LEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            787776666666553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.3e-07  Score=78.64  Aligned_cols=72  Identities=10%  Similarity=-0.165  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN----SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~----~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      +.-.+++|.++++.|+|.+|+..+++|+++.|..+    ....+|..+|.++..+|++++|+..|+++++++|++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            45578999999999999999999999999876521    1368999999999999999999999999999999644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8e-08  Score=84.19  Aligned_cols=86  Identities=14%  Similarity=-0.049  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433          421 VLVGLIKQEAKHLFWLG---EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS  497 (614)
Q Consensus       421 ~~A~~lK~~GN~lFk~G---dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~  497 (614)
                      ..+..+.+.|..+++.+   ++++||..|++++..+|..   ....+++|+|.+|.++|+|++|+..++++|+++|+   
T Consensus        31 ~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~---~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~---  104 (122)
T d1nzna_          31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---  104 (122)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC---
Confidence            35567889999998755   5567999999999988753   22468999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHHHHc
Q 047433          498 HCKSLWRRSQAYDMK  512 (614)
Q Consensus       498 ~~KAyyRRA~Al~~L  512 (614)
                      +..|..-++.+...+
T Consensus       105 ~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         105 NNQAKELERLIDKAM  119 (122)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999988887776554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.6e-06  Score=90.03  Aligned_cols=86  Identities=13%  Similarity=0.013  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC  499 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~  499 (614)
                      +.....+...|..+...|+|++|+..|.+|++++|++     ...|+++|.++...|++.+|+..|.+||.++|+   +.
T Consensus       149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-----~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~---~~  220 (497)
T d1ya0a1         149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP---FP  220 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC---CH
T ss_pred             CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CH
Confidence            3345678889999999999999999999999999999     999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcC
Q 047433          500 KSLWRRSQAYDMKG  513 (614)
Q Consensus       500 KAyyRRA~Al~~LG  513 (614)
                      .|+.+++.++....
T Consensus       221 ~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         221 AASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.35  E-value=1.8e-07  Score=92.36  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=79.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433          429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA  508 (614)
Q Consensus       429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A  508 (614)
                      ++..+++.|++++|+..|+++|+.+|.+     +.++.+++.+|...|++++|+..++++++++|+   +..++..++.+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d-----~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~---~~~~~~~l~~l   73 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKD-----ASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHL   73 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHH
Confidence            4667889999999999999999999999     999999999999999999999999999999999   99999999999


Q ss_pred             HHHcCCHHHHHHHHHH
Q 047433          509 YDMKGLGRESLMDCIM  524 (614)
Q Consensus       509 l~~LG~yeEAL~df~k  524 (614)
                      +...+..+++...+.+
T Consensus        74 l~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          74 VKAAQARKDFAQGAAT   89 (264)
T ss_dssp             HHHHHHHHHHTTSCCC
T ss_pred             HHhccccHHHHHHhhh
Confidence            8887777766654443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.05  E-value=3.6e-06  Score=74.97  Aligned_cols=71  Identities=20%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             hHHHHHHH--HHHHHHcCCcHHHHHHHHHHHhcCCCCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433          461 RMVLYSNR--AQCHLLLREPDAAISDATRALCLSNPPNS---------HCKSLWRRSQAYDMKGLGRESLMDCIMFINGC  529 (614)
Q Consensus       461 ~a~lysNR--A~~ylkLGdyeeAI~D~~~ALeLdP~~~~---------~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~  529 (614)
                      .+.+|.++  |..++..|+|++|+..|++||+++|+.+.         ...+|.++|.+|..+|++++|+.++++++++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            35566655  77888999999999999999999887321         24689999999999999999999999999986


Q ss_pred             CC
Q 047433          530 IR  531 (614)
Q Consensus       530 P~  531 (614)
                      |+
T Consensus        86 ~~   87 (156)
T d2hr2a1          86 NR   87 (156)
T ss_dssp             HH
T ss_pred             cc
Confidence            63

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=0.00023  Score=69.13  Aligned_cols=101  Identities=10%  Similarity=-0.046  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL-LREPDAAISDATRALCLSNPPNSHCKSLW  503 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk-LGdyeeAI~D~~~ALeLdP~~~~~~KAyy  503 (614)
                      .+...++...+.|+++.|...|.++++.+|..     ...|.+.|..... .|+++.|...+.++++.+|.   +...+.
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~-----~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~---~~~~w~  207 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVL  207 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh---hHHHHH
Confidence            46777788888899999999999999999998     7888888876544 58999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..+..+...|++++|...|+++++..|.++
T Consensus       208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999987543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.53  E-value=2.3e-05  Score=76.92  Aligned_cols=106  Identities=10%  Similarity=-0.075  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-CCCCCcc
Q 047433          420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL-SNPPNSH  498 (614)
Q Consensus       420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL-dP~~~~~  498 (614)
                      +..+......|..+...|++++|+..|+++++++|+.     ...+.+++..+...+..+++.....++..+ +|+   .
T Consensus        27 P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-----~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~---~   98 (264)
T d1zbpa1          27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-----LPGASQLRHLVKAAQARKDFAQGAATAKVLGENE---E   98 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCH---H
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhccccHHHHHHhhhhhcccCch---H
Confidence            3456688999999999999999999999999999999     999999999998888888877766554444 455   7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433          499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE  533 (614)
Q Consensus       499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~  533 (614)
                      ..+++.++.++...|++++|...+.++.+..|...
T Consensus        99 ~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          99 LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            78889999999999999999999999999999754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00037  Score=67.57  Aligned_cols=136  Identities=8%  Similarity=-0.111  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433          425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR  504 (614)
Q Consensus       425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR  504 (614)
                      -+...+......|+++.|...|.++|+..|.+    ...+|...+....+.|+++.|.+.+.++++..|.   ....|..
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~----~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~---~~~~~~~  173 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHHVYVT  173 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC---CTHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHH
Confidence            45666777788999999999999999999875    1457889999999999999999999999999999   8888988


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433          505 RSQAYDM-KGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP  570 (614)
Q Consensus       505 RA~Al~~-LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~  570 (614)
                      .|..... .|+.+.|...|+++++..|++.  ..-..+-.+.. ..++..++...|.+++.+.+.++
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~--~~w~~y~~~~~-~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKYGDIP--EYVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH-TTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCh
Confidence            8876544 6899999999999999988532  22221111111 12333456788999988775444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.0006  Score=62.51  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhcCCC
Q 047433          422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA-------LCLSNP  494 (614)
Q Consensus       422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A-------LeLdP~  494 (614)
                      ....+...|+.+...|+|++|+..++++|+++|.+     ..+|.+++.+|..+|++.+|+..|+++       +.++|.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~-----e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            44578889999999999999999999999999999     999999999999999999999999988       456666

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00074  Score=59.44  Aligned_cols=68  Identities=7%  Similarity=-0.138  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433          462 MVLYSNRAQCHLLLR---EPDAAISDATRALCLSNPPNSH-CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS  532 (614)
Q Consensus       462 a~lysNRA~~ylkLG---dyeeAI~D~~~ALeLdP~~~~~-~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~  532 (614)
                      ....+|.|-|+.+..   +.++||..++.+++.+|.   + ...+|.+|.+|+.+|+|++|+..++++|++.|++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~---~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            567788888888764   557899999999999986   5 5899999999999999999999999999999853

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.23  E-value=0.0026  Score=59.25  Aligned_cols=96  Identities=9%  Similarity=-0.108  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCcc
Q 047433          423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPPNSH  498 (614)
Q Consensus       423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~~~~  498 (614)
                      ++++...|..++..|||++|+..|++|.+.  .+     +.++.++|.+|..    ..++..|+..+..+...+     +
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~-----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~   69 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KE-----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----Y   69 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CC-----HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----c
Confidence            457889999999999999999999999886  45     8899999999998    679999999999988765     5


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 047433          499 CKSLWRRSQAYDM----KGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       499 ~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~P  530 (614)
                      +.+.+.+|..+..    ..+.+.|+..++.+.+..+
T Consensus        70 ~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          70 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            6788888888775    5788999999999987743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00052  Score=60.47  Aligned_cols=77  Identities=13%  Similarity=-0.151  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433          426 IKQEAKHLFWLG---EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL  502 (614)
Q Consensus       426 lK~~GN~lFk~G---dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy  502 (614)
                      -.+-|-.+.+..   +...||..+++++..+|..    .-.+++++|.+|+++|+|++|...++++|+++|+   |..|.
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~----~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~---n~qA~  110 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NKQVG  110 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC---cHHHH
Confidence            344455555443   4578999999999988865    2479999999999999999999999999999999   88876


Q ss_pred             HHHHHHH
Q 047433          503 WRRSQAY  509 (614)
Q Consensus       503 yRRA~Al  509 (614)
                      .-+..+.
T Consensus       111 ~L~~~Ie  117 (124)
T d2pqrb1         111 ALKSMVE  117 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.38  E-value=0.018  Score=48.93  Aligned_cols=83  Identities=5%  Similarity=-0.227  Sum_probs=71.4

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 047433          435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYD  510 (614)
Q Consensus       435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~  510 (614)
                      ...++++|+..|+++.+.  .+     +.+..++|..|..    ..++.+|+..++++.+..     ++.+.+++|..|.
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~-----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~Lg~~y~  102 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NS-----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQY  102 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhhhcc--cc-----hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----cchHHHHHHHHHH
Confidence            356889999999999885  44     7889999999987    568999999999998865     5689999999988


Q ss_pred             H----cCCHHHHHHHHHHHHHcC
Q 047433          511 M----KGLGRESLMDCIMFINGC  529 (614)
Q Consensus       511 ~----LG~yeEAL~df~kALkl~  529 (614)
                      .    ..++++|+..|+++.++.
T Consensus       103 ~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         103 AGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cCCccCCCHHHHHHHHHHHHHCC
Confidence            7    568999999999999883

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.88  E-value=0.036  Score=51.13  Aligned_cols=94  Identities=7%  Similarity=-0.099  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCC
Q 047433          425 LIKQEAKHLFW----LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL----LREPDAAISDATRALCLSNPPN  496 (614)
Q Consensus       425 ~lK~~GN~lFk----~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk----LGdyeeAI~D~~~ALeLdP~~~  496 (614)
                      .+...|..++.    ..+...+...++.+.+.  .+     +.+..|+|.+|..    .+++++|+..++++.+..    
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~-----~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----  212 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KD-----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----  212 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc--cc-----cccccchhhhcccCcccccchhhhhhhHhhhhccc----
Confidence            45556666664    56778888889988874  45     8899999999998    779999999999999885    


Q ss_pred             ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 047433          497 SHCKSLWRRSQAYDM----KGLGRESLMDCIMFINGCI  530 (614)
Q Consensus       497 ~~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~P  530 (614)
                       ++++++++|.+|..    ..++++|+..|+++.+...
T Consensus       213 -~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         213 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence             56899999999986    3489999999999999843

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.09  E-value=0.076  Score=44.87  Aligned_cols=79  Identities=11%  Similarity=-0.058  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH----c
Q 047433          437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM----K  512 (614)
Q Consensus       437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~----L  512 (614)
                      .|+++|+..|++|.+...       +.+..+++.  ....++++|+..++++.+.+     ++.+.+.+|..|..    .
T Consensus         7 kd~~~A~~~~~kaa~~g~-------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE-------MFGCLSLVS--NSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC-------TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHHCCC-------hhhhhhhcc--ccccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccc
Confidence            478999999999998754       334555543  45678999999999998764     67999999999886    5


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 047433          513 GLGRESLMDCIMFINGC  529 (614)
Q Consensus       513 G~yeEAL~df~kALkl~  529 (614)
                      .++++|+..|+++.+..
T Consensus        73 ~d~~~A~~~~~~aa~~g   89 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN   89 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhccC
Confidence            67999999999999873

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.028  Score=57.18  Aligned_cols=121  Identities=15%  Similarity=0.156  Sum_probs=82.9

Q ss_pred             chhhhhhHHHHhhhCCCCCcccch--hHhhHHHHHhhcCCCCCCCc-cccHHHHHHHHHHhhcCCccccccCCcccchhh
Q 047433           35 SSLRRAGVASFFKEMPLQDDQQHV--LALSGLWNIAMTQPDDPLFP-ALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYY  111 (614)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~-~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy  111 (614)
                      ...++..|....+-|-  +++..|  -++..|+++|-..++...+. +-|+.+++.+++.+          ..++-+-..
T Consensus        12 ~~~~~~aip~L~~lL~--~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~----------~~~~~~~~~   79 (529)
T d1jdha_          12 AELATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----------TNDVETARC   79 (529)
T ss_dssp             -----CHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH----------CCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcC----------CCCHHHHHH
Confidence            3444445666666663  344433  47888888886544433332 34677887777754          233456677


Q ss_pred             hhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 047433          112 AAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTF  169 (614)
Q Consensus       112 ~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  169 (614)
                      |+-+++..+ ..++....-++.|+||+|+.+|+..-+. -|+.|++||++|+......
T Consensus        80 a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~-v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          80 TAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHH-HHHHHHHHHHHhhcccchh
Confidence            888888877 5667788889999999999999988776 4888999999999876643

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.24  Score=46.10  Aligned_cols=66  Identities=20%  Similarity=0.230  Sum_probs=55.3

Q ss_pred             cCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          102 RDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       102 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      ++.+.-|=..|+.+||.-.-+.+..-...++.|+||+|+.+|.-.-.-.-++-|+.||+.++++..
T Consensus        69 ~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~  134 (264)
T d1xqra1          69 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE  134 (264)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch
Confidence            345566778899999999998888888889999999999999755566678889999999986654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=0.28  Score=46.14  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=50.5

Q ss_pred             chhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          108 IPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       108 ~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      |-.+|.-.++.-+....+..+.-+++|+|++|+.+++..=+=..||+|..+|+.|++|..
T Consensus       393 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            445677677767777788888899999999999999988776778999999999998864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.11  Score=48.50  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             HhhHHHHHhhcCCCCC-CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchH
Q 047433           60 ALSGLWNIAMTQPDDP-LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP  138 (614)
Q Consensus        60 ~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  138 (614)
                      ++..|++++-..|+.. .|..-|.+.-+..++.           ..+.-+-.+++-+|+.......+.....+++|+||+
T Consensus       122 a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~-----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-----------QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-----------SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             HHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh-----------cCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence            5666666665444322 3455566555555553           345556778999999887777777888899999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          139 LMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       139 l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      |++||.-.=.=| |+.|++||+.|++..
T Consensus       191 L~~lL~~~~~~~-~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         191 LVALVRTEHSPF-HEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHTSCCSTH-HHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCHHH-HHHHHHHHHHHHhcC
Confidence            999998654434 889999999998753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.90  E-value=0.45  Score=45.84  Aligned_cols=96  Identities=14%  Similarity=0.152  Sum_probs=68.8

Q ss_pred             hHhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -++++|.+++...+.. +-+..-|+++....|+.           +.|.-+-..|..+|+.++.+..++....++.|+++
T Consensus       207 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-----------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~  275 (434)
T d1q1sc_         207 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-----------ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA  275 (434)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred             hHHhhhcccchhhhhhHHHHhhcccchhcccccc-----------cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccc
Confidence            3566666665432211 22234466766666543           34556777899999999999999999999999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      +|+++|+-.-. --++.|+.+|++|+...
T Consensus       276 ~l~~ll~~~~~-~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         276 VFPSLLTNPKT-NIQKEATWTMSNITAGR  303 (434)
T ss_dssp             GHHHHTTCSSH-HHHHHHHHHHHHHTTSC
T ss_pred             hHHHhhcccch-hhhHHHHHHHhhhcccc
Confidence            99999986544 23788999999998644

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.07  E-value=1.5  Score=43.63  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             hHhhHHHHHhhcCCCCCCCcc-ccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433           59 LALSGLWNIAMTQPDDPLFPA-LGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP  137 (614)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~-lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  137 (614)
                      -++..|+|+....++.|+|.. -|++.....++.           ..+.-+=.+++..|+..+-+..+.....+++|++|
T Consensus       223 ~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~-----------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  291 (503)
T d1wa5b_         223 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  291 (503)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence            366788888876666666543 366666555542           23344557788888888878888888899999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433          138 PLMELLRGKISWVEQRVAVRALGHLASYDR  167 (614)
Q Consensus       138 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  167 (614)
                      .|+++|+..- +.-+..|+++||.++++..
T Consensus       292 ~l~~ll~~~~-~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         292 RLVELLSHES-TLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGCSC-HHHHHHHHHHHHHHTTSCH
T ss_pred             hhhhcccCCc-hhhhhhHHHHHHHHHHHHH
Confidence            9999998764 4456688999999998653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.03  E-value=0.48  Score=45.60  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=85.9

Q ss_pred             hhhHHHHhhhCCCCCcccchhHhhHHHHHhhcCCCCC--CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhh
Q 047433           39 RAGVASFFKEMPLQDDQQHVLALSGLWNIAMTQPDDP--LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVI  116 (614)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~  116 (614)
                      +..|-...+-|-..|...+.-++..|=+..-..++.|  ++..-|++.=+.+++.          +.++.-|=+.|+-++
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~----------~~~~~~v~~~a~~~L   81 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG----------KTDCSPIQFESAWAL   81 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT----------CGGGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc----------cCCCHHHHHHHHHHH
Confidence            4557777777777766666677888877764333322  3455666555554442          334455667899999


Q ss_pred             hccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchh
Q 047433          117 GSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFD  170 (614)
Q Consensus       117 gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~  170 (614)
                      +...-...+....-++.|+||+|+++|... .---++.|++||+.+++...++.
T Consensus        82 ~~la~~~~~~~~~i~~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          82 TNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCChhhhhHhhhccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHH
Confidence            988777778888889999999999999875 34557889999999997655543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.56  E-value=0.43  Score=47.73  Aligned_cols=95  Identities=13%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             HhhHHHHHhhcCCCC-CCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchH
Q 047433           60 ALSGLWNIAMTQPDD-PLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPP  138 (614)
Q Consensus        60 ~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  138 (614)
                      ++.+|.+++-..++. ..+.+.|++.+...++           ...+.-+...|+.+||..+.+..+.....+..|++|.
T Consensus       266 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-----------~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~  334 (503)
T d1wa5b_         266 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-----------SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPA  334 (503)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-----------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHhhccCCchhhhhhhhhhhhhhhhhcc-----------cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence            445555555322221 1233445555544443           3456778889999999999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433          139 LMELLRGKISWVEQRVAVRALGHLASYD  166 (614)
Q Consensus       139 l~~~~~~~~~wve~r~~~r~l~h~a~~~  166 (614)
                      |..+|.-.=+. -++.|+.+|++++...
T Consensus       335 l~~ll~~~~~~-i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         335 LRLLLSSPKEN-IKKEACWTISNITAGN  361 (503)
T ss_dssp             HHHHTTCSCHH-HHHHHHHHHHHHTTSC
T ss_pred             HHHHhcCCCHH-HHHHHHHHHHHHhhcc
Confidence            99999876444 4678999999998654