Citrus Sinensis ID: 047447

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccccHHHHHccccccccccHHHHccccccEEEccccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccHHccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHEEccccccHHHccccccccHHcccHHHHHHHHHHHHHccccccccccHHHHHHHcccEEEcccccHHHHccHHHHcHHHccEEEccccccHcccHHHHHHccccEEEccccccccccHHHHHHHcccEEEcccccHHcccHHcc
Coil and Loop (DISEMBL)
MLKSLQSIEISNCSILKRFleipscnidggigiERLASCKLVLEKCLslqslpsslcmfksltsleiidcqnfkilpyelGNLKALETLIVdgtlirevpeslgqlssLKILVLTNNGLKRLPESLNQLSSLKRlvlsdnplkilpkiln
Flexible Loop (DISEMBL)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQlsslkrlvlsdnplkilpkiln
Low Complexity Region (SEG)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKClslqslpsslCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN
Disordered region (IsUnstruct)
*******IEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP********LKRLVL*************
Disordered Region (DISOPRED)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN
Disordered Region (DISEMBL)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN
Disordered Region (DISPRO)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.646	0.407	0.387	4e-12
Q96CX6	371	Leucine-rich repeat-conta	yes	no	0.673	0.272	0.407	3e-11
Q3UGP9	366	Leucine-rich repeat-conta	yes	no	0.673	0.275	0.407	6e-11
Q6UWE0	723	E3 ubiquitin-protein liga	no	no	0.853	0.177	0.326	2e-10
Q9ERV7	915	p53-induced protein with	no	no	0.686	0.112	0.367	2e-09
Q6ZVD8	1323	PH domain leucine-rich re	no	no	0.62	0.070	0.372	2e-09
Q80ZI6	727	E3 ubiquitin-protein liga	no	no	0.853	0.176	0.318	2e-09
Q96NW7	1537	Leucine-rich repeat-conta	no	no	0.653	0.063	0.333	3e-09
F1MCA7	1536	Leucine-rich repeat-conta	no	no	0.653	0.063	0.333	3e-09
Q80TE7	1490	Leucine-rich repeat-conta	no	no	0.653	0.065	0.333	5e-09

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           ++ LP+ +  F+ L S   I C     LP ++G LK LETLI++G  ++++P S+GQL S
Sbjct: 50  IEELPAFIGSFQHLKSF-TISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKS 108

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           L+ L L+ N  K  P  L  L  L  L LS N ++++P
Sbjct: 109 LRTLSLSGNQFKEFPSGLGTLRQLDVLDLSKNQIRVVP 146

Danio rerio (taxid: 7955)

>sp|Q96CX6|LRC58_HUMAN Leucine-rich repeat-containing protein 58 OS=Homo sapiens GN=LRRC58 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 2/103 (1%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
            Q +P+SL   ++L +L +   Q  + +P E+ NL++LE L + G  I+E+P  LG L S
Sbjct: 132 FQEVPASLLELRALQTLSLGGNQ-LQSIPAEIENLQSLECLYLGGNFIKEIPPELGNLPS 190

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK-ILN 150
           L  LVL +N ++ +P  L+QL SL+ L L +N L  LP+ ILN
Sbjct: 191 LNYLVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPREILN 233

Homo sapiens (taxid: 9606)

>sp|Q3UGP9|LRC58_MOUSE Leucine-rich repeat-containing protein 58 OS=Mus musculus GN=Lrrc58 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
            Q LP+SL   ++L +L +   Q  + +P E+ NL++LE L + G  I+E+P  L  L S
Sbjct: 127 FQELPASLLELRALQTLSLGGNQ-LQSIPAEIENLRSLECLYLGGNFIKEIPPELANLPS 185

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK-ILN 150
           L  LVL +N ++ +P  L+QL SL+ L L +N L  LP+ ILN
Sbjct: 186 LNYLVLCDNKIQSVPPQLSQLHSLRSLSLHNNLLTYLPREILN 228

Mus musculus (taxid: 10090)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 82/138 (59%), Gaps = 10/138 (7%)

Query: 20  LEIPSCNIDGGIGIERLASCKLVLEKCLSLQS------LPSSLCMFKSLTSLEIIDCQNF 73
           L+I  C +   I     A+CK++ +K L + +      LP S C   SL +++++D  + 
Sbjct: 34  LDISKCEL-SEIPFGAFATCKVLQKKVLIVHTNHLTSLLPKS-CSLLSLATIKVLDLHDN 91

Query: 74  KI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSS 131
           ++  LP +LG L AL+ L V+   + ++P S+G L+ L+ L + +N LK LP+++ +L S
Sbjct: 92  QLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELRS 151

Query: 132 LKRLVLSDNPLKILPKIL 149
           L+ L +S N ++ LP++L
Sbjct: 152 LRTLNISGNEIQRLPQML 169

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ERV7|PIDD_MOUSE p53-induced protein with a death domain OS=Mus musculus GN=Pidd PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 43  LEKCL--SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP 100
           L  CL  +L +LP+ L     L  L++      + LP  +  L  L+ L++    + E+P
Sbjct: 111 LGACLHGTLTTLPAGLSDLACLAHLDL-SFNRLETLPTCVPELHGLDALLLSHNHLSELP 169

Query: 101 ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           E+LG L +L  L +T+N L+RLP +L  LS+L+RL LS+N L  +P
Sbjct: 170 EALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIP 215

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Mus musculus (taxid: 10090)

>sp|Q6ZVD8|PHLP2_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Homo sapiens GN=PHLPP2 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 52  LPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKI 111
            P  LC   +LT L +  C  F  LP ++GNL  L+TL +DG  +  +PE LG L  L  
Sbjct: 314 FPILLCEISTLTELNL-SCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSS 372

Query: 112 LVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKIL 145
           L ++ N   ++PE   +L+ L R+V++ N L++L
Sbjct: 373 LGISFNNFSQIPEVYEKLTMLDRVVMAGNCLEVL 406

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 10/138 (7%)

Query: 20  LEIPSCNIDGGIGIERLASCKLVLEKCLSLQS------LPSSLCMFKSLTSLEIIDCQNF 73
           L+I  C +   I     A+CK++ +K L + +      LP S C   SL +++++D    
Sbjct: 34  LDISKCEL-SEIPFGAFATCKVLQKKVLIVHTNHLTSLLPKS-CSLLSLVTIKVLDLHEN 91

Query: 74  KI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSS 131
           ++  LP ++G L  L+ L V+   +  +P S+G L  L+ L + +N LK LP++L +L S
Sbjct: 92  QLTALPDDMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELPDTLGELRS 151

Query: 132 LKRLVLSDNPLKILPKIL 149
           L+ L +S+N ++ LP++L
Sbjct: 152 LRTLDISENEIQRLPQML 169

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) cargos.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 22/120 (18%)

Query: 49  LQSLPSSLCMFKSLTSLEIID----------------------CQNFKILPYELGNLKAL 86
           LQ LP S+ + K LT+L++ D                      C   + LP  +G L +L
Sbjct: 265 LQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGYLHSL 324

Query: 87  ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            TL VD   + E+P  +G   ++ ++ L +N L+ LPE + Q+  L+ L LSDN LK LP
Sbjct: 325 RTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLP 384

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 22/120 (18%)

Query: 49  LQSLPSSLCMFKSLTSLEIID----------------------CQNFKILPYELGNLKAL 86
           LQ LP S+ + K LT+L++ D                      C   + LP  +G L +L
Sbjct: 264 LQQLPDSIGLLKKLTTLKVDDNQLTILPNTIGNLSLLEEFDCSCNELESLPSTIGYLHSL 323

Query: 87  ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            TL VD   + E+P  +G   ++ ++ L +N L+ LPE + Q+  L+ L LSDN LK LP
Sbjct: 324 RTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLP 383

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 22/120 (18%)

Query: 49  LQSLPSSLCMFKSLTSLEIID----------------------CQNFKILPYELGNLKAL 86
           LQ LP S+ + K LT+L++ D                      C   + LP  +G L +L
Sbjct: 265 LQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSL 324

Query: 87  ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            TL VD   + E+P  +G   ++ ++ L +N L+ LPE + Q+  L+ L LSDN LK LP
Sbjct: 325 RTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLP 384

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
225448269	1256	PREDICTED: TMV resistance protein N-like	0.9	0.107	0.335	4e-13
359486100	1535	PREDICTED: TMV resistance protein N-like	0.9	0.087	0.335	6e-12
298204612	1384	unnamed protein product [Vitis vinifera]	0.893	0.096	0.361	2e-11
124003930	383	leucine Rich Repeat domain protein [Micr	0.646	0.253	0.428	2e-11
359486120	1218	PREDICTED: TMV resistance protein N-like	0.9	0.110	0.342	3e-11
359486106	1320	PREDICTED: TMV resistance protein N-like	0.706	0.080	0.392	3e-11
298204609	1176	unnamed protein product [Vitis vinifera]	0.906	0.115	0.314	4e-11
443652792	875	small GTP-binding domain protein [Microc	0.673	0.115	0.362	5e-11
359486092	919	PREDICTED: TMV resistance protein N-like	0.906	0.147	0.314	5e-11
379731535	526	putative lipoprotein [Saprospira grandis	0.78	0.222	0.409	5e-11

>gi|225448269|ref|XP_002270337.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 11/146 (7%)

Query: 2    LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
             +SL+++++S CS  ++F EI             + S K +L    +++ LP S+   KS
Sbjct: 924  WESLRTLDLSKCSKFEKFPEIQG----------NMTSLKKLLLNNTAIKGLPDSIGYLKS 973

Query: 62   LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN-NGLK 120
            L  L + DC  F+  P + GN+K+L+ L +  T I+++P+S+G L SL  L LTN +  +
Sbjct: 974  LEILNVSDCSKFENFPEKGGNMKSLKELSLKNTAIKDLPDSIGDLESLWFLDLTNCSKFE 1033

Query: 121  RLPESLNQLSSLKRLVLSDNPLKILP 146
            + PE    + SL+ L L+D  +K LP
Sbjct: 1034 KFPEKGGNMKSLRVLYLNDTAIKDLP 1059

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486100|ref|XP_002274578.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 11/146 (7%)

Query: 2    LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
            L+SL+ +++S+CS  ++F E       GG     + S K +  +  +++ LP S+   +S
Sbjct: 1080 LESLRLLDLSDCSKFEKFPE------KGG----NMKSLKKLFLRNTAIKDLPDSIGDLES 1129

Query: 62   LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN-NGLK 120
            L SL++ DC  F+  P + GN+K+L  L +  T I+++P+S+G L SLK LVL++ +  +
Sbjct: 1130 LESLDLSDCSKFEKFPEKGGNMKSLMDLDLTNTAIKDLPDSIGDLESLKFLVLSDCSKFE 1189

Query: 121  RLPESLNQLSSLKRLVLSDNPLKILP 146
            + PE    + SL  L L +  +K LP
Sbjct: 1190 KFPEKGGNMKSLIHLDLKNTAIKDLP 1215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204612|emb|CBI23887.3| unnamed protein product [Vitis vinifera]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 86/141 (60%), Gaps = 7/141 (4%)

Query: 2    LKSLQSIEISNCSILKRFLEIPSC--NIDG-GIGIERLASCKLVLEKCLSLQSLPSSLCM 58
            L+SL+ + +S CS  ++F E       I G G   E++ +  L+     +++ LP S+  
Sbjct: 957  LESLEILHLSECSKFEKFPEKGGNMKKISGEGREHEKIKAVSLI---NTAIKDLPDSIGD 1013

Query: 59   FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
             +SL SL++ +C  F+  P + GN+K+L+ L +  T I+++P+S+G L SLKIL L N  
Sbjct: 1014 LESLESLDLSECSKFEKFPEKGGNMKSLKELYLINTAIKDLPDSIGGLESLKILNLKNTA 1073

Query: 119  LKRLPESLNQLSSLKRLVLSD 139
            +K LP ++++L  LKRL+L D
Sbjct: 1074 IKDLP-NISRLKFLKRLILCD 1093

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124003930|ref|ZP_01688777.1| leucine Rich Repeat domain protein [Microscilla marina ATCC 23134] gi|123990509|gb|EAY29989.1| leucine Rich Repeat domain protein [Microscilla marina ATCC 23134]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           L+ LP+ +    +L  L II+    K LP E+G +K LE L V G  +RE+P+S+GQL  
Sbjct: 105 LKHLPTDIVHLDNLRGL-IINNNQIKELPEEIGQMKNLEKLDVRGNRLRELPQSIGQLKQ 163

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           LK+L L  N L+ LPE + +LS L+ + L  N L+ LP
Sbjct: 164 LKVLELKGNQLRSLPEEIGKLSQLESITLQSNALQTLP 201

Source: Microscilla marina ATCC 23134

Species: Microscilla marina

Genus: Microscilla

Family: Cytophagaceae

Order: Cytophagales

Class: Cytophagia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|359486120|ref|XP_003633392.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 11/146 (7%)

Query: 2    LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
            L+SL S+++S CS  ++F E       GG     + S K +     +++ LP S+   +S
Sbjct: 1053 LESLVSLDLSKCSKFEKFPE------KGG----NMKSLKRLYLNNTAIKDLPDSIGDLES 1102

Query: 62   LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN-NGLK 120
            L  L++  C  F+  P + GN+K+L+ L V  T I+++P+S+G L SLKIL L+  +  +
Sbjct: 1103 LEILDLSKCSKFEKFPKKGGNMKSLKRLYVKNTAIKDLPDSIGDLESLKILDLSYCSKFE 1162

Query: 121  RLPESLNQLSSLKRLVLSDNPLKILP 146
            + PE    + SLK+L L +  +K LP
Sbjct: 1163 KFPEKGGNMKSLKQLYLINTAIKDLP 1188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486106|ref|XP_002274951.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 41  LVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP 100
           L L  C +L+ LP S+   +SL  L++ DC  F+  P + GN+K+L+ L +  T I+++P
Sbjct: 679 LSLRGCDNLKDLPDSIGDLESLEILDLTDCSRFEKFPEKGGNMKSLKELFLRNTAIKDLP 738

Query: 101 ESLGQLSSLKILVLTN-NGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            S+G L SLKIL LT+ +   + PE    + SLK L L +  +K LP
Sbjct: 739 NSIGNLESLKILYLTDCSKFDKFPEKGGNMKSLKELSLINTAIKDLP 785

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204609|emb|CBI23884.3| unnamed protein product [Vitis vinifera]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 7/143 (4%)

Query: 4   SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLT 63
            L+S+EI N S   +F + P     GG     + S + +  K  +++ LP S+   +SL 
Sbjct: 624 DLESLEILNLSYCSKFEKFPG---KGG----NMKSLRKLHLKDTAIKDLPDSIGDLESLE 676

Query: 64  SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP 123
            L++ DC  F+  P + GN+K+L  L++  T I+++P+S+G L SL+ L ++ +  ++ P
Sbjct: 677 ILDLSDCSKFEKFPEKGGNMKSLNQLLLRNTAIKDLPDSIGDLESLESLDVSGSKFEKFP 736

Query: 124 ESLNQLSSLKRLVLSDNPLKILP 146
           E    + SL +L+L +  +K LP
Sbjct: 737 EKGGNMKSLNQLLLRNTAIKDLP 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443652792|ref|ZP_21130908.1| small GTP-binding domain protein [Microcystis aeruginosa DIANCHI905] gi|443334234|gb|ELS48757.1| small GTP-binding domain protein [Microcystis aeruginosa DIANCHI905]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
            ++ +P +L    SL  L++ D Q  + +P  L +L +LE L ++   I+E+PE+L  L+
Sbjct: 119 QIREIPKALAHLTSLQELDLSDNQ-IREIPEALAHLTSLELLFLNNNQIKEIPEALAHLT 177

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
           SL++L L+NN ++ +PE+L QL+SL+ L L +N ++ +P+ L
Sbjct: 178 SLQVLYLSNNQIREIPEALAQLTSLQNLHLKNNQIREIPEAL 219

Source: Microcystis aeruginosa DIANCHI905

Species: Microcystis aeruginosa

Genus: Microcystis

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|359486092|ref|XP_002274052.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 7/143 (4%)

Query: 4   SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLT 63
            L+S+EI N S   +F + P     GG     + S + +  K  +++ LP S+   +SL 
Sbjct: 604 DLESLEILNLSYCSKFEKFPG---KGG----NMKSLRKLHLKDTAIKDLPDSIGDLESLE 656

Query: 64  SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP 123
            L++ DC  F+  P + GN+K+L  L++  T I+++P+S+G L SL+ L ++ +  ++ P
Sbjct: 657 ILDLSDCSKFEKFPEKGGNMKSLNQLLLRNTAIKDLPDSIGDLESLESLDVSGSKFEKFP 716

Query: 124 ESLNQLSSLKRLVLSDNPLKILP 146
           E    + SL +L+L +  +K LP
Sbjct: 717 EKGGNMKSLNQLLLRNTAIKDLP 739

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379731535|ref|YP_005323731.1| putative lipoprotein [Saprospira grandis str. Lewin] gi|378577146|gb|AFC26147.1| putative lipoprotein [Saprospira grandis str. Lewin]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)

Query: 27  IDGGIGI-ERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKA 85
           +DG + I +RL   +L LE+  SL SLP ++  +K+L  L + +  N + LP  +G  +A
Sbjct: 220 LDGNMAIFKRLK--RLNLERN-SLNSLPPTIGTWKNLRELRLSE-NNLETLPKAIGQCQA 275

Query: 86  LETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKIL 145
           LE LI+    +  +PES+GQL  LK L L  N L+RLP  L Q  +L+ L L DN L+ L
Sbjct: 276 LEQLIIQDNALATLPESMGQLKQLKTLALQGNQLERLPAGLMQAEALRILRLGDNQLRQL 335

Query: 146 PK 147
           P+
Sbjct: 336 PE 337

Source: Saprospira grandis str. Lewin

Species: Saprospira grandis

Genus: Saprospira

Family: Saprospiraceae

Order: Sphingobacteriales

Class: Sphingobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
ZFIN|ZDB-GENE-040718-372	238	lrrc57 "leucine rich repeat co	0.58	0.365	0.409	9.1e-13
UNIPROTKB|F1RS16	723	LRSAM1 "Uncharacterized protei	0.893	0.185	0.312	1.9e-12
UNIPROTKB|Q6UWE0	723	LRSAM1 "E3 ubiquitin-protein l	0.86	0.178	0.299	2.8e-11
UNIPROTKB|I3LED7	354	LOC100737964 "Uncharacterized	0.586	0.248	0.359	5.6e-11
UNIPROTKB|E2RR59	728	LRSAM1 "Uncharacterized protei	0.86	0.177	0.291	7.7e-11
UNIPROTKB|J9P525	728	LRSAM1 "Uncharacterized protei	0.86	0.177	0.291	7.7e-11
UNIPROTKB|Q08E63	724	LRSAM1 "Uncharacterized protei	0.86	0.178	0.291	9.7e-11
UNIPROTKB|I3L187	723	PHLPP2 "PH domain leucine-rich	0.586	0.121	0.370	1.2e-10
MGI|MGI:2684789	727	Lrsam1 "leucine rich repeat an	0.86	0.177	0.291	1.3e-10
UNIPROTKB|E1BRU6	728	LRSAM1 "Uncharacterized protei	0.893	0.184	0.270	1.6e-10

ZFIN|ZDB-GENE-040718-372 lrrc57 "leucine rich repeat containing 57" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query:    59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
             F+ L S  I  C     LP ++G LK LETLI++G  ++++P S+GQL SL+ L L+ N 
Sbjct:    60 FQHLKSFTI-SCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQ 118

Query:   119 LKRLPESLNQLSSLKRLVLSDNPLKILP 146
              K  P  L  L  L  L LS N ++++P
Sbjct:   119 FKEFPSGLGTLRQLDVLDLSKNQIRVVP 146

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RS16 LRSAM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 45/144 (31%), Positives = 79/144 (54%)

Query:     8 IEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXXCMFKSLTSLEI 67
             ++ISNC +     EIPS    G     ++   K+++             C   SL ++++
Sbjct:    34 LDISNCELS----EIPS----GAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLATIKV 85

Query:    68 IDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES 125
             +D  + ++  LP ++G L AL+ L V+   +  +P S+G L  L+ L L +N LK LP++
Sbjct:    86 LDLHDNQLTALPDDIGQLTALQVLNVERNQLTSLPRSIGNLIQLQTLNLKDNKLKELPDT 145

Query:   126 LNQLSSLKRLVLSDNPLKILPKIL 149
             L +L SL+ L +SDN ++ LP++L
Sbjct:   146 LGELRSLRTLDISDNKVQRLPQML 169

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q6UWE0 LRSAM1 "E3 ubiquitin-protein ligase LRSAM1" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 41/137 (29%), Positives = 76/137 (55%)

Query:    20 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXX-----CMFKSLTSLEIIDCQNFK 74
             L+I  C +   I     A+CK++ +K                C   SL +++++D  + +
Sbjct:    34 LDISKCELSE-IPFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQ 92

Query:    75 I--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
             +  LP +LG L AL+ L V+   + ++P S+G L+ L+ L + +N LK LP+++ +L SL
Sbjct:    93 LTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELRSL 152

Query:   133 KRLVLSDNPLKILPKIL 149
             + L +S N ++ LP++L
Sbjct:   153 RTLNISGNEIQRLPQML 169

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0070086 "ubiquitin-dependent endocytosis" evidence=IDA

GO:0044425 "membrane part" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0045806 "negative regulation of endocytosis" evidence=IMP

GO:0046755 "non-lytic virus budding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

UNIPROTKB|I3LED7 LOC100737964 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query:    57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116
             C   +LT L +  C  F  LP ++GNL  L+TL +DG  +  +PE LG L  L  L ++ 
Sbjct:   175 CEISTLTELNL-SCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISF 233

Query:   117 NGLKRLPESLNQLSSLKRLVLSDNPLKIL 145
             N   ++PE   +L+ L ++V++ N L++L
Sbjct:   234 NNFSQIPEVYEKLTMLDKVVMAGNRLEVL 262

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2RR59 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 7.7e-11, P = 7.7e-11
 Identities = 40/137 (29%), Positives = 75/137 (54%)

Query:    20 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXX-----CMFKSLTSLEIIDCQNFK 74
             L+I  C +   I     A+CK++ +K                C   +L +++++D  N +
Sbjct:    34 LDISKCELSE-IPFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLNLITIKVLDLHNNQ 92

Query:    75 I--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
             +  LP ++G L AL+ L V+   +  +P S+G L  L+ L + +N LK LP+++ +L SL
Sbjct:    93 LSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVGELRSL 152

Query:   133 KRLVLSDNPLKILPKIL 149
             + L +S+N ++ LP++L
Sbjct:   153 RTLDISNNEIQRLPQLL 169

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P525 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 7.7e-11, P = 7.7e-11
 Identities = 40/137 (29%), Positives = 75/137 (54%)

Query:    20 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXX-----CMFKSLTSLEIIDCQNFK 74
             L+I  C +   I     A+CK++ +K                C   +L +++++D  N +
Sbjct:    34 LDISKCELSE-IPFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLNLITIKVLDLHNNQ 92

Query:    75 I--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
             +  LP ++G L AL+ L V+   +  +P S+G L  L+ L + +N LK LP+++ +L SL
Sbjct:    93 LSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVGELRSL 152

Query:   133 KRLVLSDNPLKILPKIL 149
             + L +S+N ++ LP++L
Sbjct:   153 RTLDISNNEIQRLPQLL 169

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q08E63 LRSAM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 40/137 (29%), Positives = 75/137 (54%)

Query:    20 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXX-----CMFKSLTSLEIIDCQNFK 74
             L+I  C +   I     A+CK++ +K                C   SL +++++D  + +
Sbjct:    34 LDISKCELSE-IPFGAFATCKVLQKKVLIVHTNVLTSLLPKSCSLLSLATIKVLDLHDNQ 92

Query:    75 I--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
             +  LP ++G L AL+ L ++   +  +P S+G L  L+ L + +N LK LP++L +L SL
Sbjct:    93 LTALPDDIGQLTALQVLNMERNQLTYLPRSIGNLIQLQTLNVKDNRLKELPDTLGELRSL 152

Query:   133 KRLVLSDNPLKILPKIL 149
             + L +S+N ++ LP++L
Sbjct:   153 RTLDISENEIQRLPRML 169

GO:0005737 "cytoplasm" evidence=ISS

GO:0046755 "non-lytic virus budding" evidence=ISS

GO:0044425 "membrane part" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3L187 PHLPP2 "PH domain leucine-rich repeat-containing protein phosphatase 2" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%)

Query:    57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116
             C   +LT L +  C  F  LP ++GNL  L+TL +DG  +  +PE LG L  L  L ++ 
Sbjct:    57 CEISTLTELNL-SCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISF 115

Query:   117 NGLKRLPESLNQLSSLKRLVLSDNPLKIL 145
             N   ++PE   +L+ L R+V++ N L++L
Sbjct:   116 NNFSQIPEVYEKLTMLDRVVMAGNCLEVL 144

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:2684789 Lrsam1 "leucine rich repeat and sterile alpha motif containing 1" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 40/137 (29%), Positives = 73/137 (53%)

Query:    20 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXX-----CMFKSLTSLEIIDCQNFK 74
             L+I  C +   I     A+CK++ +K                C   SL +++++D    +
Sbjct:    34 LDISKCELSE-IPFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLVTIKVLDLHENQ 92

Query:    75 I--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
             +  LP ++G L  L+ L V+   +  +P S+G L  L+ L + +N LK LP++L +L SL
Sbjct:    93 LTALPDDMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELPDTLGELRSL 152

Query:   133 KRLVLSDNPLKILPKIL 149
             + L +S+N ++ LP++L
Sbjct:   153 RTLDISENEIQRLPQML 169

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0044425 "membrane part" evidence=ISO

GO:0045806 "negative regulation of endocytosis" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISO

UNIPROTKB|E1BRU6 LRSAM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 39/144 (27%), Positives = 81/144 (56%)

Query:     8 IEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXXCMFKSLTSLEI 67
             ++IS C +L    E+P     G     ++   K+++             C   SL ++++
Sbjct:    34 LDISKCELL----EVPY----GAFATCKVLQKKVLIIHTNNLTSLVPKSCSLLSLITVKV 85

Query:    68 IDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES 125
             +D  + ++  LP ++G L +L+ L ++  L++ +P+S+G L+ L++L +  N L+ LP +
Sbjct:    86 LDLHDNQLASLPADIGQLTSLQVLNLERNLLKCLPQSIGDLAQLQVLNVKGNKLRELPAT 145

Query:   126 LNQLSSLKRLVLSDNPLKILPKIL 149
             ++ L SL+ L +S+N L+ LP++L
Sbjct:   146 VSGLRSLRTLNVSENLLQELPRVL 169

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0044425 "membrane part" evidence=IEA

GO:0045806 "negative regulation of endocytosis" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0070086 "ubiquitin-dependent endocytosis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011213001 SubName- Full=Chromosome undetermined scaffold_2324, whole genome shotgun sequence; Flags- Fragment; (811 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 57  CMFKSLTSLEIIDCQNFK------ILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSL 109
           C F S      ID            +P ++  L+ L+++ + G  IR  +P SLG ++SL
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 110 KILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL 142
           ++L L+ N     +PESL QL+SL+ L L+ N L
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 31/131 (23%)

Query: 40  KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKAL------------- 86
            L L  C SL  LPSS+     L  L++  C+N +ILP  + NLK+L             
Sbjct: 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719

Query: 87  --------ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLS-------- 130
                     L +D T I E P +L +L +L  L+L     ++L E +  L+        
Sbjct: 720 FPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778

Query: 131 SLKRLVLSDNP 141
           SL RL LSD P
Sbjct: 779 SLTRLFLSDIP 789

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
            ++SLPS L    +L +L++       + P  L NL  L  L + G  I ++P  +  LS
Sbjct: 151 KIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPPEIELLS 209

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
           +L+ L L+NN +  L  SL+ L +L  L LS+N L+ LP+ +
Sbjct: 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 52  LPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETL-IVDGTLIREVPESLGQLSSLK 110
           +P+ +   + L S+ +        +P  LG++ +LE L +   +    +PESLGQL+SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 111 ILVLTNNGLK-RLPESL 126
           IL L  N L  R+P +L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLK 110
            +P  + + KS      +     + LP  L NL  L+ L +    + ++P+ L  LS+L 
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189

Query: 111 ILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L L+ N +  LP  +  LS+L+ L LS+N +  L   L+
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLS 229

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 52/202 (25%), Positives = 77/202 (38%), Gaps = 66/202 (32%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNID----GGIGIERLAS------------------- 38
           LKSL  + +S CS LK F +I + NI         IE   S                   
Sbjct: 703 LKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761

Query: 39  -------------------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE 79
                               +L L    SL  LPSS+     L  LEI +C N + LP  
Sbjct: 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821

Query: 80  LGNLKALET---------------------LIVDGTLIREVPESLGQLSSLKILVLTN-N 117
           + NL++LE+                     L +  T I EVP  + + S+L  L +   N
Sbjct: 822 I-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880

Query: 118 GLKRLPESLNQLSSLKRLVLSD 139
            L+R+  ++++L  L+ +  SD
Sbjct: 881 NLQRVSLNISKLKHLETVDFSD 902

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 76  LPYELGNLKALETL-IVDGTLIREVPESLGQLSSLKILVLTNNGLK-RLPESLNQLSSLK 133
           +PYE+G L +L  L +V   L   +P SLG L +L+ L L  N L   +P S+  L  L 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 134 RLVLSDNPL 142
            L LSDN L
Sbjct: 288 SLDLSDNSL 296

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 86  LETLIVDGTLIREVP-ESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPL 142
           L++L +    +  +P  +   L +LK+L L+ N L  + PE+ + L SL+ L LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 52  LPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVD-GTLIREVPESLGQLSSLK 110
           +P+SL    SL  L +   Q    +P ELG +K+L+ + +    L  E+P  +G L+SL 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 111 ILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL--KILPKILN 150
            L L  N L   +P SL  L +L+ L L  N L   I P I +
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 61  SLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGT-LIREVPESLGQLSSLKILVLTN 116
           S+ +LE +D  N  +   +P ++G+  +L+ L + G  L+ ++P SL  L+SL+ L L +
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 117 NGL-KRLPESLNQLSSLKRLVLSDNPL 142
           N L  ++P  L Q+ SLK + L  N L
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNL 224

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQ 105
           +L SLP+SL        L+++D    +I  LP  L     + TL V    +  +PE+L  
Sbjct: 336 ALTSLPASLP-----PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP- 387

Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSL----KRLVLSDNPL 142
            ++L+I+  + N L RLPESL           R+++  NP 
Sbjct: 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.47
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
PLN03150	623	hypothetical protein; Provisional	99.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
PLN03150	623	hypothetical protein; Provisional	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.57
PRK15386	426	type III secretion protein GogB; Provisional	98.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.29
smart00370	26	LRR Leucine-rich repeats, outliers.	96.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.12
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	93.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.66
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.82
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.4
KOG4341	483	consensus F-box protein containing LRR [General fu	91.23
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.53
KOG4341	483	consensus F-box protein containing LRR [General fu	87.45
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.5e-18  Score=138.26  Aligned_cols=146  Identities=26%  Similarity=0.319  Sum_probs=88.9

Q ss_pred             CCCCcEEecccCCCccccccCCcc-------ccCCCcCccc-ccc------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIER-LAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~-l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      ++.|++|+|++|.+.+.+|...+.       +++++|.+.. +|.      ++|++++|.+.+..|..++.+++|++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  171 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL  171 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence            677888888887777666665431       6666666642 222      56666666555566666666666666666


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC-C
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK-I  144 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~-~  144 (150)
                      ++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+++++++|.+.+ +|..++.+++|++|++++|.+. .
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            666666666666666666666666666554 445555566666666666666554 5555555556666666555554 4


Q ss_pred             CCC
Q 047447          145 LPK  147 (150)
Q Consensus       145 ~p~  147 (150)
                      +|.
T Consensus       252 ~p~  254 (968)
T PLN00113        252 IPS  254 (968)
T ss_pred             cCh
Confidence            443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=4e-18  Score=135.85  Aligned_cols=142  Identities=27%  Similarity=0.304  Sum_probs=88.6

Q ss_pred             CCCCcEEecccCCCccccccCCcc----ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC----NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      +++|++|++++|.+.+.+|.....    +++++|.+. .+|.        ++|++++|...+.+|..+..+++|++|+++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            567788888877776666643222    666666665 2332        666676666666666666666666666666


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +|.+.+.+|..+..+++|+.+++++|.+. .+|..++.+++|++|++++|.+.+ +|..++.+++|+.|++++|.+.
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            66666666666666666666666666655 455556666666666666666554 5555555556666666555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=2.2e-20  Score=118.80  Aligned_cols=147  Identities=24%  Similarity=0.323  Sum_probs=126.4

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      +..++.|.||.|. +..+|..+..      +++.+|+++.+|.        +.|.++. +.+..+|.+|+.++.|+.||+
T Consensus        32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence            3456677778765 4456666554      7888888888777        6677777 456788999999999999999


Q ss_pred             ecCcccC-CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           68 IDCQNFK-ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        68 ~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      .+|++.. ..|..|..+.+|+.+++++|.+..+|+.+++++.||.+.+.+|.+-.+|.+++.++.|+.+++.+|++..+|
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            9999865 478888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 047447          147 KILN  150 (150)
Q Consensus       147 ~~~~  150 (150)
                      ++++
T Consensus       190 pel~  193 (264)
T KOG0617|consen  190 PELA  193 (264)
T ss_pred             hhhh
Confidence            8764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=5.6e-18  Score=126.04  Aligned_cols=147  Identities=24%  Similarity=0.296  Sum_probs=99.6

Q ss_pred             CCCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447            1 MLKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL   65 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L   65 (150)
                      ++..|+.||||.|+ ++++|..+..      +++++|.|.++|.         -.||+++| .+..+|+.+..+.+|+.|
T Consensus       101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhh
Confidence            35677888888876 5566776654      7778888887777         55677773 456666666667777777


Q ss_pred             EeecCccc-------------------------CCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCc
Q 047447           66 EIIDCQNF-------------------------KILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLK  120 (150)
Q Consensus        66 ~l~~~~~~-------------------------~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~  120 (150)
                      ++++|.+.                         ..+|..+..+.+|..++++.|.+..+|+.+.++.+|+.|++++|.|+
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence            77666532                         12455566666777777777777777777777777777777777777


Q ss_pred             ccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447          121 RLPESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       121 ~lp~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      .+....+.+.+|++|+++.|++..+|+++
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhccchHHH
Confidence            66555555556666666666666666544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=2.3e-16  Score=117.62  Aligned_cols=146  Identities=23%  Similarity=0.294  Sum_probs=96.4

Q ss_pred             CCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc--------cce------------------------ec
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS--------CKL------------------------VL   43 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~--------~~L------------------------~l   43 (150)
                      +.+-+||||+|+ +..+|...+.       +++++|++..+|.        ++|                        .+
T Consensus       126 Kn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            356678888876 4456776655       7788888887776        333                        33


Q ss_pred             ccccC-CCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCccc
Q 047447           44 EKCLS-LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL  122 (150)
Q Consensus        44 ~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~l  122 (150)
                      ++.+. ...+|.++.++.+|..+|++.|++. .+|+.+-.+++|..|++++|.++++....+.+.++..|+++.|+++.+
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence            33221 1245666677777777777765543 356666677777777777777776655555666677777777777777


Q ss_pred             CccccCCCCCCEEEccCCCCC--CCCCCCC
Q 047447          123 PESLNQLSSLKRLVLSDNPLK--ILPKILN  150 (150)
Q Consensus       123 p~~~~~~~~L~~l~l~~n~l~--~~p~~~~  150 (150)
                      |+++..++.|+.|++.+|++.  -+|+.+|
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            777777777777777776654  6666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.54  E-value=2.7e-16  Score=111.50  Aligned_cols=109  Identities=32%  Similarity=0.380  Sum_probs=90.8

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n  117 (150)
                      +.+|..+ +.++.+|+.++.+.+|..|++.+|++... | .|.++..|..+++..|.+..+|.+. ..++++..+++.+|
T Consensus       186 ~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  186 KHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             Hhcccch-hhhhcCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence            4555555 46777888888888888888888776654 3 5788888888888888888888765 58999999999999


Q ss_pred             cCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447          118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN  150 (150)
Q Consensus       118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~  150 (150)
                      +++..|+++..+++|..+|+++|.|+.+|..+|
T Consensus       263 klke~Pde~clLrsL~rLDlSNN~is~Lp~sLg  295 (565)
T KOG0472|consen  263 KLKEVPDEICLLRSLERLDLSNNDISSLPYSLG  295 (565)
T ss_pred             ccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence            999999999999999999999999999998875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.54  E-value=3.9e-15  Score=109.99  Aligned_cols=122  Identities=24%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447           26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI   96 (150)
Q Consensus        26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l   96 (150)
                      +.++.|+++.+|.         +.|++..|.+-..-.-.|.++++|+.|.+.+|.+....-..|..+.+++++++..|.+
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            4445555554444         4455555322111123345555555555555555555545566667777777777777


Q ss_pred             Cccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCCCCCC
Q 047447           97 REVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        97 ~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ..+-+ ++.++++|++|+++.|.|.. -++.|..+.+|+.|+++.|+|+.+|+
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            66654 55677777778888777777 45667777778888888888777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.52  E-value=9.9e-16  Score=113.04  Aligned_cols=108  Identities=27%  Similarity=0.290  Sum_probs=48.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      +.|+++.|.+....++.+....+|++|++++|+++...++.|..+..|+.|+++.|.++.+.+ .+..+.+|+.|++.+|
T Consensus       296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            444555544444444445555555555555555555444444444444444444444443333 2333444444444444


Q ss_pred             cCcc-cCc---cccCCCCCCEEEccCCCCCCCC
Q 047447          118 GLKR-LPE---SLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       118 ~i~~-lp~---~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      .+.+ +.+   .+..+++|+.|.+.+|+++++|
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            4333 211   1333444444444444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=1.2e-15  Score=97.33  Aligned_cols=123  Identities=26%  Similarity=0.342  Sum_probs=108.1

Q ss_pred             ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447           26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      +.++.|.++.+|.        +.|.+.+ ++.+.+|..+.+++.|+.|+++.|++. ..|.+|+.++.|+.+|+..|.+.
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence            7888999998887        6777877 578899999999999999999986644 46788999999999999999887


Q ss_pred             --ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447           98 --EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN  150 (150)
Q Consensus        98 --~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~  150 (150)
                        .+|..+..++.|+-+++++|-++-+|..++.+++|+.+.++.|.+-++|.++|
T Consensus       116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig  170 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG  170 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence              67888878888999999999999999999999999999999999999998765

>PLN03210 Resistant to P

Probab=99.47  E-value=5.7e-13  Score=108.09  Aligned_cols=105  Identities=31%  Similarity=0.496  Sum_probs=60.3

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCC-CCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      +.|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.+++++|. +..+|..   ..+++.|++++|
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n  856 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT  856 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence            345566666666677777777778888877776666565443 45556666665542 2233321   234555555555


Q ss_pred             cCcccCccccCCCCCCEEEccC-CCCCCCCC
Q 047447          118 GLKRLPESLNQLSSLKRLVLSD-NPLKILPK  147 (150)
Q Consensus       118 ~i~~lp~~~~~~~~L~~l~l~~-n~l~~~p~  147 (150)
                      .++.+|.++..+++|+.+++++ +.+..+|.
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            5555665556666666666655 34444443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=2.2e-14  Score=110.19  Aligned_cols=140  Identities=27%  Similarity=0.290  Sum_probs=104.4

Q ss_pred             CCCCcEEecccCCCccccccCCcc--------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC--------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~--------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~   64 (150)
                      +++|+.|+|..|. +.++|+.+..        +..+.|.+..+|.         +.|.+.+|.+....-+.+.+..+|+.
T Consensus       309 ~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             cceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            5678888888765 5566775544        4555666666665         66777787666665566778888999


Q ss_pred             EEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           65 LEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        65 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      |++++|++.......+.++..|+.|++++|.++.+|..+.++..|+.|...+|++..+| ++..++.|+.+|++.|.++
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            99998777665556678888888889998888888877777777888777777777777 6677777777777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.40  E-value=1.2e-14  Score=103.28  Aligned_cols=141  Identities=26%  Similarity=0.352  Sum_probs=95.6

Q ss_pred             CCcEEecccCCCccccccCCcc---------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447            4 SLQSIEISNCSILKRFLEIPSC---------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL   65 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~---------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L   65 (150)
                      ..+.|++++-+ .+.+|+..+.         .+++.|++..+|.         +.+.++. ++...+|..+..++++..|
T Consensus       363 ~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  363 TTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN-NKISFVPLELSQLQKLTFL  440 (565)
T ss_pred             hhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc-CccccchHHHHhhhcceee
Confidence            34566666643 4456665544         6677777777777         3344444 4555666666666666666


Q ss_pred             EeecCcccCCCchhhcCcCcCceEEecCC-----------------------CCCccch-hhcCCCCCCEEEccCCcCcc
Q 047447           66 EIIDCQNFKILPYELGNLKALETLIVDGT-----------------------LIREVPE-SLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-----------------------~l~~l~~-~~~~~~~L~~l~l~~n~i~~  121 (150)
                      ++++ ++...+|..++.+..|+.++++.|                       +++.+++ .++++..|..+++.+|.+..
T Consensus       441 ~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~  519 (565)
T KOG0472|consen  441 DLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ  519 (565)
T ss_pred             eccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence            6664 344445555566666666666655                       4444444 36788889999999999999


Q ss_pred             cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447          122 LPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       122 lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      +|..++++++|+++++++|+++ .|+.
T Consensus       520 IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  520 IPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             CChhhccccceeEEEecCCccC-CCHH
Confidence            9999999999999999999988 5653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=1.6e-12  Score=100.73  Aligned_cols=132  Identities=27%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             CCCcEEecccCCCcccccc---CCccccCCCcCcccccc-----cceecccccCCCcCcccccC----------------
Q 047447            3 KSLQSIEISNCSILKRFLE---IPSCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCM----------------   58 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~---~~~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~----------------   58 (150)
                      +.|++|++++|.+.+ +|.   .+..+++++|.++.+|.     ++|++++|++. .+|.....                
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~  379 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA  379 (788)
T ss_pred             cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcc
Confidence            457777777765543 333   22235566666665554     56666664432 33321110                


Q ss_pred             -CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447           59 -FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL  137 (150)
Q Consensus        59 -l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l  137 (150)
                       ..+|+.|++++|.+.+ +|.   ..++|+.|++++|.++.+|...   ..|+.+++++|+++.+|..+..+++|+.+++
T Consensus       380 l~~~L~~LdLs~N~Lt~-LP~---l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        380 LPSGLKELIVSGNRLTS-LPV---LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccccceEEecCCcccC-CCC---cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence             1245566666655543 332   1245677777777777666432   3567788888888888888888889999999


Q ss_pred             cCCCCC
Q 047447          138 SDNPLK  143 (150)
Q Consensus       138 ~~n~l~  143 (150)
                      ++|+++
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            999887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.38  E-value=6.7e-13  Score=102.87  Aligned_cols=79  Identities=33%  Similarity=0.421  Sum_probs=35.5

Q ss_pred             CccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447           61 SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        61 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n  140 (150)
                      +|+.|++++|.+.+ +|..+  .++|+.|++++|.+..+|..+.  +.|+.|++++|.++.+|..+.  .+|+.+++++|
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             cceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence            44444454444333 23222  1345555555555554444331  345555555555555444332  13444445555


Q ss_pred             CCCCCC
Q 047447          141 PLKILP  146 (150)
Q Consensus       141 ~l~~~p  146 (150)
                      .+..+|
T Consensus       399 ~L~~LP  404 (754)
T PRK15370        399 NLVRLP  404 (754)
T ss_pred             CcccCc
Confidence            544444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.37  E-value=1.2e-12  Score=101.50  Aligned_cols=138  Identities=23%  Similarity=0.250  Sum_probs=93.2

Q ss_pred             CCCcEEecccCCCccccccCC----ccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447            3 KSLQSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN   72 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   72 (150)
                      ++|++|++++|.+. .+|..+    ..+++++|.+..+|.      +.|++++|++ ..+|..+.  .+|+.|++++|++
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCcc-CccccccC--CCCcEEECCCCcc
Confidence            47888999888654 455433    337888888887775      6778887544 45665443  4677788877766


Q ss_pred             cCCCchhhc-------------------CcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCC
Q 047447           73 FKILPYELG-------------------NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLK  133 (150)
Q Consensus        73 ~~~~~~~~~-------------------~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~  133 (150)
                      .+. |..+.                   ..++|+.|++++|.++.+|..+.  ++|+.|++++|+++.+|..+.  ++|+
T Consensus       296 t~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~  370 (754)
T PRK15370        296 RTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTIT  370 (754)
T ss_pred             ccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcC
Confidence            542 21110                   12456777777777776665543  578888888888887776553  5788


Q ss_pred             EEEccCCCCCCCCCCC
Q 047447          134 RLVLSDNPLKILPKIL  149 (150)
Q Consensus       134 ~l~l~~n~l~~~p~~~  149 (150)
                      .|++++|.+..+|..+
T Consensus       371 ~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        371 TLDVSRNALTNLPENL  386 (754)
T ss_pred             EEECCCCcCCCCCHhH
Confidence            9999999888888643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=1.3e-11  Score=95.80  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             CCCcEEecccCCCccccccCC---ccccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447            3 KSLQSIEISNCSILKRFLEIP---SCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK   74 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~---~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   74 (150)
                      ++|++|++++|++. .+|...   ..+++.+|.++.+|.     +.|++++|. +..+|.   ..++|+.|++++|.+.+
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             CCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCc-cccccc---cccccceeECCCCcccc
Confidence            46677777766543 334322   224445554444433     344444432 223332   12445555555554443

>PLN03150 hypothetical protein; Provisional

Probab=99.29  E-value=1.9e-11  Score=93.82  Aligned_cols=104  Identities=28%  Similarity=0.360  Sum_probs=89.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n  117 (150)
                      +.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|+.++.+++|+.|++++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            46788888888888988999999999999999999999988999999999999999888 77888899999999999999


Q ss_pred             cCcc-cCccccCC-CCCCEEEccCCCC
Q 047447          118 GLKR-LPESLNQL-SSLKRLVLSDNPL  142 (150)
Q Consensus       118 ~i~~-lp~~~~~~-~~L~~l~l~~n~l  142 (150)
                      .+++ +|..++.. .++..+++.+|..
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCcc
Confidence            9887 88877653 4667888888753

>PLN03210 Resistant to P

Probab=99.27  E-value=5.2e-11  Score=96.89  Aligned_cols=97  Identities=24%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCC-CCC
Q 047447           26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGT-LIR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~   97 (150)
                      +.+..+.++.+|.       ++|++.+++ +..++..+..+++|+.++++++...+.+|. +..+++|+.|++.+| .+.
T Consensus       594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        594 LRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             EEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc
Confidence            5555555555554       455555533 334444455555555555555544444442 444555555555554 233


Q ss_pred             ccchhhcCCCCCCEEEccCCc-CcccCc
Q 047447           98 EVPESLGQLSSLKILVLTNNG-LKRLPE  124 (150)
Q Consensus        98 ~l~~~~~~~~~L~~l~l~~n~-i~~lp~  124 (150)
                      .+|..++.+++|+.+++++|. ++.+|.
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            555555555555555555543 444443

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=2.1e-11  Score=79.08  Aligned_cols=83  Identities=33%  Similarity=0.435  Sum_probs=23.2

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccC--ccccCCCCCCEE
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLP--ESLNQLSSLKRL  135 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp--~~~~~~~~L~~l  135 (150)
                      +.+++.|++++|.+....  .+..++.|+.|++++|.++++.+.+ ..+++|++|++++|.|.++.  ..+..+++|+.|
T Consensus        41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            444555555554444331  2344455555555555555443333 23455555555555554432  123444555555


Q ss_pred             EccCCCCC
Q 047447          136 VLSDNPLK  143 (150)
Q Consensus       136 ~l~~n~l~  143 (150)
                      ++.+|++.
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=5.6e-12  Score=89.56  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=27.6

Q ss_pred             CCCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS   38 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~   38 (150)
                      +++|+.||||.|++...-|+.+..       ++.++|+|+.+|+
T Consensus        90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            578999999999877766665544       5566688887776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.4e-13  Score=98.80  Aligned_cols=121  Identities=25%  Similarity=0.368  Sum_probs=103.7

Q ss_pred             ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      ++++.|++..+|.       +.|-+++ +.++.+|..++.+..|..||.+.|.+... |..++++.+|+.+.+.+|.+..
T Consensus       126 l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~  203 (722)
T KOG0532|consen  126 LDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED  203 (722)
T ss_pred             hhhccchhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh
Confidence            7788888888777       5566666 67889999999889999999999877664 5567899999999999999999


Q ss_pred             cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447           99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus        99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      +|+.+. .-.|..|++++|++..+|-.|.+|+.|+++-+.+|++++=|..+
T Consensus       204 lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  204 LPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             CCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            999887 45688999999999999999999999999999999998877644

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=4.6e-11  Score=91.71  Aligned_cols=88  Identities=34%  Similarity=0.580  Sum_probs=81.9

Q ss_pred             ccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccC
Q 047447           62 LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSD  139 (150)
Q Consensus        62 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~  139 (150)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+++ +|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999999999999999999999999999998 788889999999999999999997 899999999999999999


Q ss_pred             CCCC-CCCCCC
Q 047447          140 NPLK-ILPKIL  149 (150)
Q Consensus       140 n~l~-~~p~~~  149 (150)
                      |.++ .+|..+
T Consensus       500 N~l~g~iP~~l  510 (623)
T PLN03150        500 NSLSGRVPAAL  510 (623)
T ss_pred             CcccccCChHH
Confidence            9998 888754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=4.7e-11  Score=84.47  Aligned_cols=105  Identities=28%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             cceecccccCCC----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcC
Q 047447           39 CKLVLEKCLSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQ  105 (150)
Q Consensus        39 ~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~  105 (150)
                      +.|++++|.+..    .++..+..++++++|++++|.+.+.    ++..+...++|+.+++++|.++.     +...+..
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence            455566555442    2223344455566666666555432    22223344566666666665541     2223445


Q ss_pred             CCCCCEEEccCCcCcc-cCccc-c----CCCCCCEEEccCCCCC
Q 047447          106 LSSLKILVLTNNGLKR-LPESL-N----QLSSLKRLVLSDNPLK  143 (150)
Q Consensus       106 ~~~L~~l~l~~n~i~~-lp~~~-~----~~~~L~~l~l~~n~l~  143 (150)
                      +++|+++++++|.+++ -...+ .    ..+.|+++++++|.+.
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            5566666666666554 11111 1    1245666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.09  E-value=1.6e-10  Score=62.36  Aligned_cols=56  Identities=36%  Similarity=0.601  Sum_probs=27.0

Q ss_pred             CceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCC
Q 047447           86 LETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNP  141 (150)
Q Consensus        86 L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~  141 (150)
                      |+++++++|.++.+++ .+..+++|+++++++|.++.++ ..+.++++|+++++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444455444444443 3344455555555555554432 234555555555555554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.3e-10  Score=75.46  Aligned_cols=97  Identities=25%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~  116 (150)
                      +.|++++|.+. .+. .+..++.|+.|++++|.+....+.....+++|+.|++++|.+..+.  ..+..++.|+.+++.+
T Consensus        45 ~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   45 EVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             -EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             CEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            57899996544 443 4678999999999999888754322246899999999999988553  3567899999999999


Q ss_pred             CcCcccCc----cccCCCCCCEEEc
Q 047447          117 NGLKRLPE----SLNQLSSLKRLVL  137 (150)
Q Consensus       117 n~i~~lp~----~~~~~~~L~~l~l  137 (150)
                      |+++..+.    .+..+|+|+.||-
T Consensus       123 NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  123 NPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcccchhhHHHHHHHHcChhheeCC
Confidence            99987543    3577889998864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.07  E-value=3.8e-12  Score=93.98  Aligned_cols=137  Identities=29%  Similarity=0.412  Sum_probs=71.1

Q ss_pred             ecccCCCccccccCCcc--------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447            9 EISNCSILKRFLEIPSC--------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN   72 (150)
Q Consensus         9 ~l~~~~~~~~~p~~~~~--------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   72 (150)
                      .|++ ...+++|-...+        .+++.|++..+|.        +.+.+++| -...+|..+..+..|++++++.|.+
T Consensus        56 ~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   56 LLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             cccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchh
Confidence            3443 344555554444        5566666666666        33334442 2344555555566666666655443


Q ss_pred             cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCC---------------------
Q 047447           73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSS---------------------  131 (150)
Q Consensus        73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~---------------------  131 (150)
                      +. .|..+..++ |+.+.+++|+++.+|+.++..+.|.+++.+.|++..+|..++.+.+                     
T Consensus       134 S~-lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L  211 (722)
T KOG0532|consen  134 SH-LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL  211 (722)
T ss_pred             hc-CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence            33 233344444 4555555555555555555555555555555555544443333333                     


Q ss_pred             -CCEEEccCCCCCCCCCCC
Q 047447          132 -LKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       132 -L~~l~l~~n~l~~~p~~~  149 (150)
                       |..||+++|++..+|.+|
T Consensus       212 pLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             ceeeeecccCceeecchhh
Confidence             566677777776666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=2.5e-10  Score=61.62  Aligned_cols=60  Identities=32%  Similarity=0.476  Sum_probs=54.6

Q ss_pred             CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcC
Q 047447           60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGL  119 (150)
Q Consensus        60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i  119 (150)
                      ++|++|++++|++....+..|..+++|+++++++|.++.+++ .+..+++|+++++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999998888777899999999999999999998876 779999999999999875

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.04  E-value=3.2e-12  Score=98.65  Aligned_cols=89  Identities=26%  Similarity=0.318  Sum_probs=79.4

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL  137 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l  137 (150)
                      .+.|+.|++.+|.+....-+.+.++.+|+.|++++|.+..+|. .+.++..|++|++++|.++.+|..+..++.|++|..
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            5567888899888887766678899999999999999999987 568999999999999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 047447          138 SDNPLKILPK  147 (150)
Q Consensus       138 ~~n~l~~~p~  147 (150)
                      .+|++..+|+
T Consensus       438 hsN~l~~fPe  447 (1081)
T KOG0618|consen  438 HSNQLLSFPE  447 (1081)
T ss_pred             cCCceeechh
Confidence            9999999985

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.9e-11  Score=85.65  Aligned_cols=146  Identities=19%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             CCCCcEEecccCCCccccc--------cCCccccCCCcCcccccc----------cceecccccCCC-cCcccccCCCCc
Q 047447            2 LKSLQSIEISNCSILKRFL--------EIPSCNIDGGIGIERLAS----------CKLVLEKCLSLQ-SLPSSLCMFKSL   62 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p--------~~~~~l~l~~~~l~~l~~----------~~L~l~~~~~~~-~~~~~~~~l~~L   62 (150)
                      |+.++.||||.|-+..-.|        +.+..++++.|++...-+          +.|.++.|.+.. .+-.....+|++
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            5667777777664333111        112226777777664333          667777776653 222334567888


Q ss_pred             cEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcc--cCcc-----ccCCCCCC
Q 047447           63 TSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKR--LPES-----LNQLSSLK  133 (150)
Q Consensus        63 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~--lp~~-----~~~~~~L~  133 (150)
                      ..|++..|...........-+..|+.|++++|.+-..+  ...+.++.|..++++.+.+.+  +|+.     ...+++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            88888887533332222334567888899888777555  356788888888888888887  4443     34577899


Q ss_pred             EEEccCCCCCCCCC
Q 047447          134 RLVLSDNPLKILPK  147 (150)
Q Consensus       134 ~l~l~~n~l~~~p~  147 (150)
                      +|++..|++.++++
T Consensus       305 ~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  305 YLNISENNIRDWRS  318 (505)
T ss_pred             eeecccCccccccc
Confidence            99999999877664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.5e-10  Score=80.22  Aligned_cols=118  Identities=22%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447           26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      +++++|.|+.+..        +.|++++|.+.. +. .+..+++|+.||+++|.+.... .+-.++.+++.|.+++|.+.
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHh
Confidence            4555555544333        455555543322 21 1455566666666665444332 22334555666666666555


Q ss_pred             ccchhhcCCCCCCEEEccCCcCccc--CccccCCCCCCEEEccCCCCCCCCC
Q 047447           98 EVPESLGQLSSLKILVLTNNGLKRL--PESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        98 ~l~~~~~~~~~L~~l~l~~n~i~~l--p~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .+. .++.+-+|..|++.+|+|+.+  ...+++++.|+++.+.+|++..+|.
T Consensus       366 ~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  366 TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            432 345566677777777777764  3457788888888888888876653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.95  E-value=3.5e-10  Score=80.03  Aligned_cols=105  Identities=30%  Similarity=0.278  Sum_probs=63.3

Q ss_pred             cceecccccCCC----cCcccccCC-CCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKCLSLQ----SLPSSLCMF-KSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      ++|++++|....    .+...+..+ ++|+.|++++|.+.+.    ++..+..+++++.+++++|.++.     ++..+.
T Consensus       111 ~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~  190 (319)
T cd00116         111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK  190 (319)
T ss_pred             cEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH
Confidence            456666655432    222334445 6677777777766632    23344555677777777776651     233445


Q ss_pred             CCCCCCEEEccCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447          105 QLSSLKILVLTNNGLKR-----LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       105 ~~~~L~~l~l~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ..+.|+++++++|.+++     +...+..+++|+++++++|.+.
T Consensus       191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            55677788887777663     2334556677888888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=9.4e-11  Score=81.23  Aligned_cols=104  Identities=26%  Similarity=0.285  Sum_probs=88.7

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      +++|+++| .++.+..+..-+|.++.|++++|.+.....  +..+++|+.||+++|.++++-.+-..+.+++.|.++.|.
T Consensus       287 telDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  287 TELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhcccccc-chhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            78999994 667777777788999999999999877643  778999999999999999887777788899999999999


Q ss_pred             CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447          119 LKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       119 i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      |..+ .++..+-+|..||+++|+|+.+.
T Consensus       364 iE~L-SGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  364 IETL-SGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             Hhhh-hhhHhhhhheeccccccchhhHH
Confidence            9886 35678889999999999987553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.87  E-value=7.4e-11  Score=83.98  Aligned_cols=116  Identities=23%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeec-CcccCCCchhhcCcCcCceEEecCCC
Q 047447           26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID-CQNFKILPYELGNLKALETLIVDGTL   95 (150)
Q Consensus        26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~   95 (150)
                      +.+..|.|+.+|.         +.||+++|++...-|+.|.++.++..|-+.+ |+++......|.++..++.|.+.-|.
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            5555555555554         4455555544444455555555544433333 33333333445555555555554444


Q ss_pred             CCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCC
Q 047447           96 IREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP  141 (150)
Q Consensus        96 l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~  141 (150)
                      +..++. .+..++++..|.+.+|.+..+++ .+..+.+++++++..|+
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            443332 44555555555555555555554 35555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=4.3e-09  Score=76.88  Aligned_cols=116  Identities=28%  Similarity=0.393  Sum_probs=69.7

Q ss_pred             ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447           26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      +++++|.+..+|.        +.|++++| ....+|........|+++.+++|..... +..+..+..+..+.+.+|++.
T Consensus       168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             cccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceee
Confidence            5555555555544        34555553 3444444333444466666665542222 223445555666666666666


Q ss_pred             ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCC
Q 047447           98 EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus        98 ~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~  144 (150)
                      .++..++.+++++.+++++|.++.++. ++...+++.+++++|.+..
T Consensus       246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             eccchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence            556666777777788888888777665 6777778888887777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.75  E-value=9.2e-09  Score=51.59  Aligned_cols=39  Identities=38%  Similarity=0.601  Sum_probs=21.5

Q ss_pred             CCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447          108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       108 ~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +|++|++++|+|+++|..+.++++|+.+++++|+++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            455556666666655555556666666666666655543

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.71  E-value=3.4e-10  Score=86.20  Aligned_cols=117  Identities=23%  Similarity=0.146  Sum_probs=81.7

Q ss_pred             ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447           26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      .+.++|++..+..        +.|++++|++.. +. .+..+++|++||+++|.+....--...++. |+.|.+.+|.++
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence            4445565554433        788899965543 32 567888999999999776554221223344 888999998887


Q ss_pred             ccchhhcCCCCCCEEEccCCcCcccCc--cccCCCCCCEEEccCCCCCCCC
Q 047447           98 EVPESLGQLSSLKILVLTNNGLKRLPE--SLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        98 ~l~~~~~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      ++. .+.++.+|+.|+++.|-+.+..+  .++.+..|+.|++.||++..-|
T Consensus       246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            664 45688889999999998887432  3566778899999999886544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=5.4e-09  Score=73.42  Aligned_cols=118  Identities=15%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             CCCCcEEecccCCCccccccCCcc----------ccCCCcCcccccc----------------------cceecccccCC
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC----------NIDGGIGIERLAS----------------------CKLVLEKCLSL   49 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~----------l~l~~~~l~~l~~----------------------~~L~l~~~~~~   49 (150)
                      +|+|++||||+|.+....+..+..          +++.++.+.....                      +++....| .+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence            578999999999877655544433          6666666553221                      33333332 22


Q ss_pred             C-----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEcc
Q 047447           50 Q-----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVLT  115 (150)
Q Consensus        50 ~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~  115 (150)
                      +     .+...+...+.++.+.++.|.+...    ....|.++++|+.||+.+|.++     .+...+..+++|+.++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            2     1222344455555555555544321    2234555666666666666554     123344555556666666


Q ss_pred             CCcCc
Q 047447          116 NNGLK  120 (150)
Q Consensus       116 ~n~i~  120 (150)
                      +|.+.
T Consensus       250 dcll~  254 (382)
T KOG1909|consen  250 DCLLE  254 (382)
T ss_pred             ccccc
Confidence            66554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.65  E-value=3.2e-08  Score=72.32  Aligned_cols=142  Identities=32%  Similarity=0.353  Sum_probs=84.6

Q ss_pred             CCCcEEecccCCCcccccc-------CCccccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            3 KSLQSIEISNCSILKRFLE-------IPSCNIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~-------~~~~l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      +.++.|++.++.+.. +|.       .+..+++++|.+..+|.        +.|++++| .+..+|...+.++.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence            345666666655443 222       12225666666665532        55666664 33444444345666666666


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ++|.+... |........|+.+.+++|.....+..+..+..+..+.+.+|++..++..++.+++++.+++++|.++.++.
T Consensus       194 s~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         194 SGNKISDL-PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             cCCccccC-chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            66554443 22223344466666666654455555556666666666777766666777888889999999999887765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.9e-08  Score=72.65  Aligned_cols=143  Identities=21%  Similarity=0.278  Sum_probs=99.4

Q ss_pred             CCCCCcEEecccCCCcccccc-------CCccccCCCcCcc---------cccc-cceecccccCCCcCcccccCCCCcc
Q 047447            1 MLKSLQSIEISNCSILKRFLE-------IPSCNIDGGIGIE---------RLAS-CKLVLEKCLSLQSLPSSLCMFKSLT   63 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~-------~~~~l~l~~~~l~---------~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~   63 (150)
                      .+|+|+.|+|+.|.+..-...       ....+.++++.++         .+|. +.|++++|...........-+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            378999999999876532111       1111666666665         3444 7788998754443333445577899


Q ss_pred             EEEeecCcccCCC-chhhcCcCcCceEEecCCCCCcc--chh-----hcCCCCCCEEEccCCcCcccCc--cccCCCCCC
Q 047447           64 SLEIIDCQNFKIL-PYELGNLKALETLIVDGTLIREV--PES-----LGQLSSLKILVLTNNGLKRLPE--SLNQLSSLK  133 (150)
Q Consensus        64 ~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~l~~l--~~~-----~~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~  133 (150)
                      .|++++|++.... ....+.++.|..++++.+++.++  |+.     .-..++|++|++..|+|.+++.  .+..+++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            9999999877653 23467888999999999998854  332     2468899999999999987653  355567778


Q ss_pred             EEEccCCCCC
Q 047447          134 RLVLSDNPLK  143 (150)
Q Consensus       134 ~l~l~~n~l~  143 (150)
                      ++.+..|.+.
T Consensus       330 ~l~~~~n~ln  339 (505)
T KOG3207|consen  330 HLRITLNYLN  339 (505)
T ss_pred             hhhccccccc
Confidence            7777777664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.59  E-value=3e-09  Score=65.82  Aligned_cols=88  Identities=25%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             CCCCccEEEeecCcccCCCchhh-cCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEE
Q 047447           58 MFKSLTSLEIIDCQNFKILPYEL-GNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLV  136 (150)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~  136 (150)
                      ...+|+..++++|.+.. +|+.| ...+..+.+++.+|.+.++|..+..+++|+.++++.|.+...|..+..+.++..|+
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            34455566666654433 33333 34456666777777777777666667777777777777766666655566666666


Q ss_pred             ccCCCCCCCC
Q 047447          137 LSDNPLKILP  146 (150)
Q Consensus       137 l~~n~l~~~p  146 (150)
                      ..+|.+..+|
T Consensus       130 s~~na~~eid  139 (177)
T KOG4579|consen  130 SPENARAEID  139 (177)
T ss_pred             CCCCccccCc
Confidence            6666665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.57  E-value=1.6e-07  Score=47.11  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             cCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccC
Q 047447           85 ALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP  123 (150)
Q Consensus        85 ~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp  123 (150)
                      +|+.|++++|.++.+|+.+.+++.|+.+++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            567777777777777666677777777777777776643

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.53  E-value=7.7e-07  Score=64.90  Aligned_cols=51  Identities=16%  Similarity=0.286  Sum_probs=25.7

Q ss_pred             CCCCcEEecccCCCccccccC---CccccCCC-cCcccccc------cceecccccCCCcCc
Q 047447            2 LKSLQSIEISNCSILKRFLEI---PSCNIDGG-IGIERLAS------CKLVLEKCLSLQSLP   53 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~---~~~l~l~~-~~l~~l~~------~~L~l~~~~~~~~~~   53 (150)
                      ++.++.|++++|. +..+|..   +..+.+++ +.++.+|.      +.|.+++|..+..+|
T Consensus        51 ~~~l~~L~Is~c~-L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCD-IESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCC-CcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc
Confidence            4678888888874 4444532   22244433 33343332      555555554344343

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.46  E-value=1.1e-08  Score=63.30  Aligned_cols=88  Identities=26%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             CccEEEeecCcccCC--CchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447           61 SLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL  137 (150)
Q Consensus        61 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l  137 (150)
                      .+..++++.|.+-..  .+..+..-..|..+++++|.+..+|+.+ ...+.++.+++++|.|.++|.++..++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            455677777765432  2233445556888999999999999877 5667899999999999999999999999999999


Q ss_pred             cCCCCCCCCCC
Q 047447          138 SDNPLKILPKI  148 (150)
Q Consensus       138 ~~n~l~~~p~~  148 (150)
                      +.|++...|+-
T Consensus       108 ~~N~l~~~p~v  118 (177)
T KOG4579|consen  108 RFNPLNAEPRV  118 (177)
T ss_pred             ccCccccchHH
Confidence            99999887753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=1.8e-08  Score=70.89  Aligned_cols=141  Identities=21%  Similarity=0.236  Sum_probs=101.0

Q ss_pred             CCCCcEEecccCCCcccc-------------------ccCCccccCCCcCcccccc-------------cceecccccCC
Q 047447            2 LKSLQSIEISNCSILKRF-------------------LEIPSCNIDGGIGIERLAS-------------CKLVLEKCLSL   49 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~-------------------p~~~~~l~l~~~~l~~l~~-------------~~L~l~~~~~~   49 (150)
                      +..|+.|+|.+|.+...-                   |..+.-++.+.|++..-+.             +.+.++.|.+.
T Consensus       119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~  198 (382)
T KOG1909|consen  119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR  198 (382)
T ss_pred             ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc
Confidence            567889999998765321                   1111227778888876554             44555554432


Q ss_pred             C----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhh-cCCCCCCEEEcc
Q 047447           50 Q----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESL-GQLSSLKILVLT  115 (150)
Q Consensus        50 ~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~-~~~~~L~~l~l~  115 (150)
                      .    .+...+..+++|+.||+.+|.++..    +...+..+++|+.+++++|.+.     .+...+ ...++|+.+.+.
T Consensus       199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA  278 (382)
T ss_pred             CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence            2    2335578899999999999987654    4456778899999999999876     233444 457899999999


Q ss_pred             CCcCcc-----cCccccCCCCCCEEEccCCCC
Q 047447          116 NNGLKR-----LPESLNQLSSLKRLVLSDNPL  142 (150)
Q Consensus       116 ~n~i~~-----lp~~~~~~~~L~~l~l~~n~l  142 (150)
                      +|.|+.     +...+...+.|..|++++|++
T Consensus       279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            999885     233456678999999999998

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.37  E-value=2.5e-07  Score=73.58  Aligned_cols=102  Identities=27%  Similarity=0.363  Sum_probs=74.9

Q ss_pred             cceecccccC-CCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLS-LQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~  116 (150)
                      ++|-+.++.. ...++ ..|..++.|+.||+++|.-.+.+|..++.+-+|+.|++++..+..+|..++++..|.+|++..
T Consensus       548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence            4556666431 33333 336678888888888888888888888888888888888888888888888888888888877


Q ss_pred             CcCcc-cCccccCCCCCCEEEccCC
Q 047447          117 NGLKR-LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       117 n~i~~-lp~~~~~~~~L~~l~l~~n  140 (150)
                      +.... +|.....+.+|++|.+...
T Consensus       628 ~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  628 TGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccchhhhcccccEEEeecc
Confidence            66433 4455556788888877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.25  E-value=3.7e-06  Score=55.42  Aligned_cols=99  Identities=24%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~  116 (150)
                      ..+|+++|.+.. ++ .|..++.|..|.+++|++....|.--..++.++.|.+.+|.+.++-+  .+..++.|++|.+-+
T Consensus        45 d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            567888865433 22 35678899999999999888877655567889999999998875533  456788999999999


Q ss_pred             CcCcccCc----cccCCCCCCEEEccC
Q 047447          117 NGLKRLPE----SLNQLSSLKRLVLSD  139 (150)
Q Consensus       117 n~i~~lp~----~~~~~~~L~~l~l~~  139 (150)
                      |+++..+.    .+..+++|+.||..+
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            99887432    367788999998764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=1.2e-06  Score=60.35  Aligned_cols=120  Identities=17%  Similarity=0.088  Sum_probs=78.2

Q ss_pred             CCCCCcEEecccCCCccccccCCcc----------ccCCCcCcccccc----------------------cceecccccC
Q 047447            1 MLKSLQSIEISNCSILKRFLEIPSC----------NIDGGIGIERLAS----------------------CKLVLEKCLS   48 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~~~----------l~l~~~~l~~l~~----------------------~~L~l~~~~~   48 (150)
                      +||+|+.++||+|.+...+|..+..          +.+++|.+..+..                      ++..+..|+ 
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-
Confidence            6899999999999999888887765          6677777775544                      333333322 


Q ss_pred             CCcCc-----ccccCCCCccEEEeecCcccCC-----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEE
Q 047447           49 LQSLP-----SSLCMFKSLTSLEIIDCQNFKI-----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILV  113 (150)
Q Consensus        49 ~~~~~-----~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~  113 (150)
                      ...-+     ..+.+...++.+.+.+|.+...     .-..+.++.+|+.|++.+|.++.     +..++..++.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            22211     2234445677777777765432     22344567788888888887662     233556677788888


Q ss_pred             ccCCcCcc
Q 047447          114 LTNNGLKR  121 (150)
Q Consensus       114 l~~n~i~~  121 (150)
                      +.+|.++.
T Consensus       249 lnDClls~  256 (388)
T COG5238         249 LNDCLLSN  256 (388)
T ss_pred             ccchhhcc
Confidence            88887664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.99  E-value=5.9e-06  Score=66.03  Aligned_cols=85  Identities=26%  Similarity=0.339  Sum_probs=71.8

Q ss_pred             CCCCccEEEeecCc--ccCCCchhhcCcCcCceEEecCC-CCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447           58 MFKSLTSLEIIDCQ--NFKILPYELGNLKALETLIVDGT-LIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR  134 (150)
Q Consensus        58 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~  134 (150)
                      ..+.++.|-+.+|.  +.....+.|..++.|..||+++| .+..+|..++.+-+||+|++++..+..+|..++.+..|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            34578888888876  33333455888999999999988 5679999999999999999999999999999999999999


Q ss_pred             EEccCCCC
Q 047447          135 LVLSDNPL  142 (150)
Q Consensus       135 l~l~~n~l  142 (150)
                      |++..+.-
T Consensus       623 Lnl~~~~~  630 (889)
T KOG4658|consen  623 LNLEVTGR  630 (889)
T ss_pred             eccccccc
Confidence            99987653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.84  E-value=7.8e-05  Score=54.69  Aligned_cols=105  Identities=31%  Similarity=0.465  Sum_probs=62.5

Q ss_pred             ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCC---CC
Q 047447           26 NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL---IR   97 (150)
Q Consensus        26 l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~---l~   97 (150)
                      ++++++.++.+|.     +.|.+++|..++.+|..+  ..+|++|++++|.....+|.      +|+.|++..+.   +.
T Consensus        57 L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~  128 (426)
T PRK15386         57 LYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIK  128 (426)
T ss_pred             EEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccc
Confidence            6777777776665     778888877777777544  35788888888754444443      35555555543   33


Q ss_pred             ccchhhcCC------------------CCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447           98 EVPESLGQL------------------SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        98 ~l~~~~~~~------------------~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n  140 (150)
                      .+|+.+..+                  ++|++|++++|....+|..  -..+|+.|+++.+
T Consensus       129 ~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        129 NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHIE  187 (426)
T ss_pred             cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEeccc
Confidence            455443222                  2566666666664444421  2246777777655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.82  E-value=5.9e-07  Score=69.18  Aligned_cols=101  Identities=30%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             ceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCc
Q 047447           40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNG  118 (150)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~  118 (150)
                      +.+.+. +.+..+...+.-++.++.|++++|++..+.  .+..+++|++||++.|.++.+|. ....+. |+.|.+.+|.
T Consensus       168 ~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~  243 (1096)
T KOG1859|consen  168 TASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA  243 (1096)
T ss_pred             hhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence            345555 344555666777889999999999988875  57789999999999999988776 333444 8999999999


Q ss_pred             CcccCccccCCCCCCEEEccCCCCCCC
Q 047447          119 LKRLPESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus       119 i~~lp~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      ++.+. .+.++.+|+.||++.|-|...
T Consensus       244 l~tL~-gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  244 LTTLR-GIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             HHhhh-hHHhhhhhhccchhHhhhhcc
Confidence            88863 467888999999999987643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.66  E-value=1.2e-05  Score=59.37  Aligned_cols=85  Identities=31%  Similarity=0.426  Sum_probs=39.0

Q ss_pred             ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCE
Q 047447           56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKR  134 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~  134 (150)
                      +..+++|++|++++|.+...-+  +..++.|+.|++.+|.+..+. .+..+..|+.+++++|.+..+... ...+.+++.
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            3445555555555555444322  234444555555555554332 122244555555555555544331 234444444


Q ss_pred             EEccCCCCC
Q 047447          135 LVLSDNPLK  143 (150)
Q Consensus       135 l~l~~n~l~  143 (150)
                      +++.+|.+.
T Consensus       191 l~l~~n~i~  199 (414)
T KOG0531|consen  191 LDLGGNSIR  199 (414)
T ss_pred             HhccCCchh
Confidence            455554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=0.0001  Score=48.81  Aligned_cols=83  Identities=29%  Similarity=0.447  Sum_probs=66.8

Q ss_pred             CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccCc--cccCCCCCCEEE
Q 047447           60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLPE--SLNQLSSLKRLV  136 (150)
Q Consensus        60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~~l~  136 (150)
                      .+...+|+++|.+...  +.|..++.|.+|.+.+|.++.+.+.+ ..++.++.|.+.+|.|..+.+  .+..++.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566789998876554  24668899999999999999887766 466779999999999988643  467889999999


Q ss_pred             ccCCCCCC
Q 047447          137 LSDNPLKI  144 (150)
Q Consensus       137 l~~n~l~~  144 (150)
                      +-+|+++.
T Consensus       120 ll~Npv~~  127 (233)
T KOG1644|consen  120 LLGNPVEH  127 (233)
T ss_pred             ecCCchhc
Confidence            99998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=1.8e-06  Score=60.27  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             cceecccccCCCcCc--ccccCCCCccEEEeecCcccCCCchh-----------------------------hcCcCcCc
Q 047447           39 CKLVLEKCLSLQSLP--SSLCMFKSLTSLEIIDCQNFKILPYE-----------------------------LGNLKALE   87 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------------~~~l~~L~   87 (150)
                      +.+++++|+..++..  --+.+++.|..|+++||......-..                             ...++.+.
T Consensus       237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence            677888877655332  33567788888888888654321111                             12345555


Q ss_pred             eEEecCC-CCC-ccchhhcCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEEEccCC
Q 047447           88 TLIVDGT-LIR-EVPESLGQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        88 ~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l~~n  140 (150)
                      .||+++| .++ .+..++-+++.|+++.++.|. |.. ---.+...++|.+|++.+.
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            5555554 223 223344455555666555554 211 1113455666777766553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.50  E-value=6.1e-05  Score=58.97  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             cceecccccC-CCcCccccc-CCCCccEEEeecCcccC-CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEcc
Q 047447           39 CKLVLEKCLS-LQSLPSSLC-MFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT  115 (150)
Q Consensus        39 ~~L~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~  115 (150)
                      ++|+++|... ...++..++ -+|+|+.|.+.+-.+.. .+...+..+++|..||+++..++.+ .++..+++|+.|.+.
T Consensus       125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR  203 (699)
T ss_pred             hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence            4455555321 223333333 24555555554422211 1222333455555555555554433 233344444444433


Q ss_pred             C
Q 047447          116 N  116 (150)
Q Consensus       116 ~  116 (150)
                      +
T Consensus       204 n  204 (699)
T KOG3665|consen  204 N  204 (699)
T ss_pred             C
Confidence            3

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.50  E-value=5.2e-05  Score=56.05  Aligned_cols=90  Identities=32%  Similarity=0.320  Sum_probs=66.4

Q ss_pred             cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447           55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR  134 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~  134 (150)
                      .+..+.+++.+++.+|.+.+... .+..+++|+++++++|.++.+. .+..++.|+.|++.+|.|..+.. +..++.|+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL  166 (414)
T ss_pred             ccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence            35677888888888887766533 1457888999999999888664 23455568888999999888643 455788888


Q ss_pred             EEccCCCCCCCCC
Q 047447          135 LVLSDNPLKILPK  147 (150)
Q Consensus       135 l~l~~n~l~~~p~  147 (150)
                      +++++|++..+..
T Consensus       167 l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  167 LDLSYNRIVDIEN  179 (414)
T ss_pred             ccCCcchhhhhhh
Confidence            8899888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=0.00012  Score=57.38  Aligned_cols=103  Identities=19%  Similarity=0.159  Sum_probs=67.4

Q ss_pred             cceecccccCCC-cCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEcc
Q 047447           39 CKLVLEKCLSLQ-SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLT  115 (150)
Q Consensus        39 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~  115 (150)
                      +.|.+.+..... ....-..++++|..||+++.++...  .++..+.+|+.|.+.+=.+...  -..+.+++.|+.||++
T Consensus       151 ~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS  228 (699)
T KOG3665|consen  151 RSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS  228 (699)
T ss_pred             ceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence            567777743322 2233445788888889988777665  4567888888887766555532  2355678888888888


Q ss_pred             CCcCcccC-------ccccCCCCCCEEEccCCCCC
Q 047447          116 NNGLKRLP-------ESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       116 ~n~i~~lp-------~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ......-+       +.-..++.|+.||.+++.+.
T Consensus       229 ~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  229 RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            76643322       12234788888888887653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.00028  Score=49.64  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             CcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccC--ccccCCCCCCEEEccCCCCC
Q 047447           84 KALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLP--ESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        84 ~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp--~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +++..+.+.+|.+....  +.....+.+..|.++.++|.++.  +++.++++|+.+.+.++++.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            44444555555554322  13344555555666666665532  34566666666666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00017  Score=30.29  Aligned_cols=18  Identities=39%  Similarity=0.495  Sum_probs=11.1

Q ss_pred             CCEEEccCCCCCCCCCCC
Q 047447          132 LKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       132 L~~l~l~~n~l~~~p~~~  149 (150)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            566666666666666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.00074  Score=46.30  Aligned_cols=96  Identities=24%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             ceecccccCCCcCcccccCCCCccEEEeecC--cccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEcc
Q 047447           40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC--QNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLT  115 (150)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~  115 (150)
                      .+++.++.+++.  ..+-.+++|++|.++.|  .+.+.++-....+++|+++++++|+++.+  .+.+..+.+|..|++.
T Consensus        47 ~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~  124 (260)
T KOG2739|consen   47 LLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF  124 (260)
T ss_pred             hhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence            445555433222  23456788889999888  55555554455668899999999988743  1234566667777887


Q ss_pred             CCcCcccC----ccccCCCCCCEEEc
Q 047447          116 NNGLKRLP----ESLNQLSSLKRLVL  137 (150)
Q Consensus       116 ~n~i~~lp----~~~~~~~~L~~l~l  137 (150)
                      .|..+.+-    ..+.-+++|++++-
T Consensus       125 n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  125 NCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cCCccccccHHHHHHHHhhhhccccc
Confidence            77765532    22455677777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00048  Score=47.17  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=51.9

Q ss_pred             cCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCC--CCC-ccchhhcCCCCCCEEEccCCcCcccC--ccccCCCC
Q 047447           57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGT--LIR-EVPESLGQLSSLKILVLTNNGLKRLP--ESLNQLSS  131 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n--~l~-~l~~~~~~~~~L~~l~l~~n~i~~lp--~~~~~~~~  131 (150)
                      .....++.+.+.++.++...  .|..+++|++|.++.|  .+. .++.....+++|++++++.|.|+.+.  .....+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34455555555555444432  3457778888888888  333 44444455688888888888877632  22455566


Q ss_pred             CCEEEccCCCCC
Q 047447          132 LKRLVLSDNPLK  143 (150)
Q Consensus       132 L~~l~l~~n~l~  143 (150)
                      |..|++..|...
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            777777766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.0003  Score=49.49  Aligned_cols=61  Identities=23%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             CCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC--ccchhhcCCCCCCEEEccCCc
Q 047447           58 MFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR--EVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      .+|.++.|+++.|.+...+...-....+|+.+.+.+..+.  .....+..++.++.+.++.|.
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            4445555555544443332111012334444444444333  112223344444444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.75  E-value=0.00097  Score=26.10  Aligned_cols=16  Identities=50%  Similarity=0.702  Sum_probs=7.0

Q ss_pred             CCCEEEccCCCCCCCC
Q 047447          131 SLKRLVLSDNPLKILP  146 (150)
Q Consensus       131 ~L~~l~l~~n~l~~~p  146 (150)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666655554

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.71  E-value=0.0006  Score=28.59  Aligned_cols=17  Identities=41%  Similarity=0.636  Sum_probs=7.9

Q ss_pred             CCEEEccCCcCcccCcc
Q 047447          109 LKILVLTNNGLKRLPES  125 (150)
Q Consensus       109 L~~l~l~~n~i~~lp~~  125 (150)
                      |+++++++|+++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.52  E-value=0.0042  Score=43.44  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             ccCCCCccEEEeecCcccCCCchhh----cCcCcCceEEecCCCCCccch-h-------------hcCCCCCCEEEccCC
Q 047447           56 LCMFKSLTSLEIIDCQNFKILPYEL----GNLKALETLIVDGTLIREVPE-S-------------LGQLSSLKILVLTNN  117 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~l~l~~n~l~~l~~-~-------------~~~~~~L~~l~l~~n  117 (150)
                      +..+++++.+++++|.+....|+.+    .+...+.+|.+++|++..+.. -             ...-+.|+...+..|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4456666666666666655554432    334556666666666553321 0             123445555555555


Q ss_pred             cCcccCccccC--C---CCCCEEEccCCCCC
Q 047447          118 GLKRLPESLNQ--L---SSLKRLVLSDNPLK  143 (150)
Q Consensus       118 ~i~~lp~~~~~--~---~~L~~l~l~~n~l~  143 (150)
                      .+...+.....  +   ..|+.+.+..|.|.
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence            55554433221  1   24555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.00059  Score=48.09  Aligned_cols=79  Identities=20%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             cceecccccCCCc---CcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCC-CC-ccchhhcCCCCCCEE
Q 047447           39 CKLVLEKCLSLQS---LPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTL-IR-EVPESLGQLSSLKIL  112 (150)
Q Consensus        39 ~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l  112 (150)
                      ..|+++|+...-.   +..-...++++.+||+++|..... ....|.+++.|+++.+++|. +. +.--.+...++|.+|
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence            5678888753321   122235789999999999876544 34567789999999999984 32 111245788899999


Q ss_pred             EccCC
Q 047447          113 VLTNN  117 (150)
Q Consensus       113 ~l~~n  117 (150)
                      ++-++
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            87554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=9.6e-05  Score=51.42  Aligned_cols=78  Identities=26%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             cCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc-cCc-----cccC
Q 047447           57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR-LPE-----SLNQ  128 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~-lp~-----~~~~  128 (150)
                      ..++.|+.|.++-|+++..-|  +..+..|+.+++..|.+.++.+  -+.++++|+.|.+..|+-.+ -+.     .+..
T Consensus        38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            457778888888877777654  5677788888888887776655  34678888888887777444 221     1334


Q ss_pred             CCCCCEEE
Q 047447          129 LSSLKRLV  136 (150)
Q Consensus       129 ~~~L~~l~  136 (150)
                      +++|++||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            56666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.29  E-value=0.0033  Score=27.35  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=13.7

Q ss_pred             CCCCEEEccCCCCCCCCCC
Q 047447          130 SSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       130 ~~L~~l~l~~n~l~~~p~~  148 (150)
                      ++|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677777777777777764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.29  E-value=0.0033  Score=27.35  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=13.7

Q ss_pred             CCCCEEEccCCCCCCCCCC
Q 047447          130 SSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       130 ~~L~~l~l~~n~l~~~p~~  148 (150)
                      ++|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677777777777777764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.17  E-value=0.018  Score=35.18  Aligned_cols=82  Identities=17%  Similarity=0.298  Sum_probs=45.9

Q ss_pred             ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCC
Q 047447           54 SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSS  131 (150)
Q Consensus        54 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~  131 (150)
                      ..|..+.+++.+.+.. .+.......|..+.+++.+.+.+ .+..++. .+..++.++.+.+..+ +..++. .+.++ .
T Consensus        29 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred             hhcccccccccccccc-cccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence            4466777888888876 34444445677777788888865 4444444 5567888888888664 555433 35665 7


Q ss_pred             CCEEEccC
Q 047447          132 LKRLVLSD  139 (150)
Q Consensus       132 L~~l~l~~  139 (150)
                      ++.+.+..
T Consensus       105 l~~i~~~~  112 (129)
T PF13306_consen  105 LKEINIPS  112 (129)
T ss_dssp             --EEE-TT
T ss_pred             ceEEEECC
Confidence            88777664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.0014  Score=45.85  Aligned_cols=81  Identities=28%  Similarity=0.364  Sum_probs=44.5

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc--ccCCCCCCEEE
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES--LNQLSSLKRLV  136 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~--~~~~~~L~~l~  136 (150)
                      +.+.++|++.+|.+...  .....++.|+.|.++-|.++.+. .+..|+.|+++++..|.|.++-+-  +.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            44455555555554433  12345666666666666665543 234566666666666666654332  45566666666


Q ss_pred             ccCCCC
Q 047447          137 LSDNPL  142 (150)
Q Consensus       137 l~~n~l  142 (150)
                      +..|+.
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.40  E-value=0.074  Score=32.39  Aligned_cols=87  Identities=18%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             ceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           40 KLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        40 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      .+.+.+ + ...++ ..|.++.+++.+.+.. .........|..++.++.+.+..+ +..++. .+.++ .++.+.+.. 
T Consensus        39 ~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-  112 (129)
T PF13306_consen   39 SINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-  112 (129)
T ss_dssp             EEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-
T ss_pred             cccccc-c-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-
Confidence            555555 2 33333 4466676788888864 433333456667888888888664 555554 45565 777777654 


Q ss_pred             cCcccCc-cccCCCCC
Q 047447          118 GLKRLPE-SLNQLSSL  132 (150)
Q Consensus       118 ~i~~lp~-~~~~~~~L  132 (150)
                      .+..++. .+.++++|
T Consensus       113 ~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  113 NITKIEENAFKNCTKL  128 (129)
T ss_dssp             B-SS----GGG-----
T ss_pred             CccEECCccccccccC
Confidence            4444433 35555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.36  E-value=0.00074  Score=45.99  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447           55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR  134 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~  134 (150)
                      .+......+.||++.|+.... ...|..+..+..++++.|.+..+|+.++....+..++...|+.+..|..++..+.+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            345566677777777654433 2335556667777888888877777777777777777777777778888888888887


Q ss_pred             EEccCCCC
Q 047447          135 LVLSDNPL  142 (150)
Q Consensus       135 l~l~~n~l  142 (150)
                      ++.-+|.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            77777664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.0082  Score=39.98  Aligned_cols=75  Identities=23%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             cEEEeecCcccCCCchhhcCcCcCceEEecCCC-CC-ccchhh-cCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEEEc
Q 047447           63 TSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IR-EVPESL-GQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRLVL  137 (150)
Q Consensus        63 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~-~l~~~~-~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l  137 (150)
                      +.++.++..+...--+.+..++.++.+.+.+|. +. ...+-+ +-.++|+.|+++.|. |++ --..+..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            344444444433322334444555555555442 22 111111 234455555555554 554 1223444444444443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=93.89  E-value=0.046  Score=23.82  Aligned_cols=17  Identities=53%  Similarity=0.716  Sum_probs=12.9

Q ss_pred             CCCEEEccCCCCCCCCC
Q 047447          131 SLKRLVLSDNPLKILPK  147 (150)
Q Consensus       131 ~L~~l~l~~n~l~~~p~  147 (150)
                      +|+.|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            57777788888877776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.66  E-value=0.038  Score=41.28  Aligned_cols=102  Identities=24%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             cceecccccCCCc--CcccccCCCCccEEEeecC-cccCCCc----hhhcCcCcCceEEecCCC-CCcc-chhh-cCCCC
Q 047447           39 CKLVLEKCLSLQS--LPSSLCMFKSLTSLEIIDC-QNFKILP----YELGNLKALETLIVDGTL-IREV-PESL-GQLSS  108 (150)
Q Consensus        39 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~l~l~~n~-l~~l-~~~~-~~~~~  108 (150)
                      +.+.+.++.....  +-......++|+.|+++++ ......+    .....+..++.++++++. +++. -..+ ..++.
T Consensus       191 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~  270 (482)
T KOG1947|consen  191 KRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPN  270 (482)
T ss_pred             hHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCC
Confidence            3445555544333  2233345666666666652 2211111    122334556666666665 4422 1222 33666


Q ss_pred             CCEEEccCCc-Ccc--cCccccCCCCCCEEEccCC
Q 047447          109 LKILVLTNNG-LKR--LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       109 L~~l~l~~n~-i~~--lp~~~~~~~~L~~l~l~~n  140 (150)
                      |+.+.+..|. +++  +......++.|++++++.+
T Consensus       271 L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  271 LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            6666655555 444  3333445566666666644

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.82  E-value=0.042  Score=23.21  Aligned_cols=17  Identities=24%  Similarity=0.409  Sum_probs=11.1

Q ss_pred             CCCCcEEecccCCCccc
Q 047447            2 LKSLQSIEISNCSILKR   18 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~   18 (150)
                      +++|++|+|++|.+.+.
T Consensus         1 ~~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDE   17 (24)
T ss_dssp             -TT-SEEE-TSSBEHHH
T ss_pred             CCCCCEEEccCCcCCHH
Confidence            57899999999986543

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.47  E-value=0.11  Score=22.48  Aligned_cols=17  Identities=18%  Similarity=0.554  Sum_probs=13.8

Q ss_pred             CCCCcEEecccCCCccc
Q 047447            2 LKSLQSIEISNCSILKR   18 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~   18 (150)
                      ++.|++|+|++|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            68899999999976553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.40  E-value=0.033  Score=41.65  Aligned_cols=81  Identities=25%  Similarity=0.281  Sum_probs=48.9

Q ss_pred             cCCCCccEEEeecCc-ccCCCchhhc-CcCcCceEEecCCC-CC--ccchhhcCCCCCCEEEccCCc-Ccc--cCccccC
Q 047447           57 CMFKSLTSLEIIDCQ-NFKILPYELG-NLKALETLIVDGTL-IR--EVPESLGQLSSLKILVLTNNG-LKR--LPESLNQ  128 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~l~l~~n~-l~--~l~~~~~~~~~L~~l~l~~n~-i~~--lp~~~~~  128 (150)
                      ..+.+++.++++++. ++...-..+. .++.|+.+.+.+|. ++  .+......++.|++++++.|. +++  +......
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            346778888888877 3333222222 36788888877775 55  333445678888888888777 333  3333344


Q ss_pred             CCCCCEEEc
Q 047447          129 LSSLKRLVL  137 (150)
Q Consensus       129 ~~~L~~l~l  137 (150)
                      +++++.+.+
T Consensus       320 c~~l~~l~~  328 (482)
T KOG1947|consen  320 CPNLRELKL  328 (482)
T ss_pred             Ccchhhhhh
Confidence            555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.23  E-value=0.16  Score=37.77  Aligned_cols=98  Identities=20%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             cceecccccCCCc--CcccccCCCCccEEEeecCcccCCC-----chhhcCcCcCceEEecCCCCC--ccchhhcCCCCC
Q 047447           39 CKLVLEKCLSLQS--LPSSLCMFKSLTSLEIIDCQNFKIL-----PYELGNLKALETLIVDGTLIR--EVPESLGQLSSL  109 (150)
Q Consensus        39 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L  109 (150)
                      +.+++.+|.....  +-.--.+.+.++++.+++|......     ...-..+..+..+.++++...  ...+.+..++.|
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL  428 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence            4566666543322  2222235677777777777554332     122234566777777777554  233455677777


Q ss_pred             CEEEccCCc-Ccc--cCccccCCCCCCEEE
Q 047447          110 KILVLTNNG-LKR--LPESLNQLSSLKRLV  136 (150)
Q Consensus       110 ~~l~l~~n~-i~~--lp~~~~~~~~L~~l~  136 (150)
                      +..++.+++ ++.  +...-.+++++++..
T Consensus       429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  429 ERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            777776665 443  322334455555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.42  E-value=0.26  Score=21.43  Aligned_cols=16  Identities=38%  Similarity=0.544  Sum_probs=11.0

Q ss_pred             CCCCEEEccCCCCCCC
Q 047447          130 SSLKRLVLSDNPLKIL  145 (150)
Q Consensus       130 ~~L~~l~l~~n~l~~~  145 (150)
                      ++|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4577777777777644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.53  E-value=0.044  Score=36.62  Aligned_cols=80  Identities=21%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhc-CcCcCceEEecCC-CCCcc-chhhcCCCCCCEEEc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELG-NLKALETLIVDGT-LIREV-PESLGQLSSLKILVL  114 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-~l~~L~~l~l~~n-~l~~l-~~~~~~~~~L~~l~l  114 (150)
                      +.++.+++.+...--+.+..+++++.|.+.+|.-.+.-- +.++ -.++|+.|++++| .|++- ...+..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            667777766555444556778888888888876544311 1222 4578999999988 57643 446778888888877


Q ss_pred             cCCc
Q 047447          115 TNNG  118 (150)
Q Consensus       115 ~~n~  118 (150)
                      .+-.
T Consensus       184 ~~l~  187 (221)
T KOG3864|consen  184 YDLP  187 (221)
T ss_pred             cCch
Confidence            6543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.45  E-value=0.42  Score=35.60  Aligned_cols=103  Identities=21%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             cceecccccCCCcCc-ccc-cCCCCccEEEeecCcccCCCc-h-hhcCcCcCceEEecCCCCC---ccchhhcCCCCCCE
Q 047447           39 CKLVLEKCLSLQSLP-SSL-CMFKSLTSLEIIDCQNFKILP-Y-ELGNLKALETLIVDGTLIR---EVPESLGQLSSLKI  111 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~L~~l~l~~n~l~---~l~~~~~~~~~L~~  111 (150)
                      ++++.++|...+..+ ..+ .+..+|+.+.+..|...+... . .-..++.|+.+++.++...   ++.....+++.||.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            455666665443222 112 345778888888876543321 1 1135677888888887554   24444468888999


Q ss_pred             EEccCCc-Cccc-----CccccCCCCCCEEEccCCC
Q 047447          112 LVLTNNG-LKRL-----PESLNQLSSLKRLVLSDNP  141 (150)
Q Consensus       112 l~l~~n~-i~~l-----p~~~~~~~~L~~l~l~~n~  141 (150)
                      +.+++|. |++-     ...-..+..+..+.+++++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            8888887 5542     1222334556666666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.32  E-value=0.45  Score=20.92  Aligned_cols=14  Identities=29%  Similarity=0.437  Sum_probs=11.5

Q ss_pred             CCCcEEecccCCCc
Q 047447            3 KSLQSIEISNCSIL   16 (150)
Q Consensus         3 ~~L~~L~l~~~~~~   16 (150)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57899999998764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.27  E-value=0.014  Score=39.99  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             hcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447           80 LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN  150 (150)
Q Consensus        80 ~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~  150 (150)
                      +......+.+|++.|.+..+-..+..++.+..++++.|.+.-+|+.++....+++++...|..+..|.+++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence            44556678889998877766556666677788899999999999999998889999999998888887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 6e-16
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 23/159 (14%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFK 60
           L  LQ + I    ++    E+P         +++ A    L L +   L++LP+S+    
Sbjct: 103 LSHLQHMTIDAAGLM----ELPDT-------MQQFAGLETLTLARN-PLRALPASIASLN 150

Query: 61  SLTSLEIIDCQNFKILPYELGN---------LKALETLIVDGTLIREVPESLGQLSSLKI 111
            L  L I  C     LP  L +         L  L++L ++ T IR +P S+  L +LK 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210

Query: 112 LVLTNNGLKRLPESLNQLSSLKRLVLSD-NPLKILPKIL 149
           L + N+ L  L  +++ L  L+ L L     L+  P I 
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIV-DGTLIREVPESLGQL 106
            L +L  ++     L  L++  C   +  P   G    L+ LI+ D + +  +P  + +L
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 107 SSLKILVLTNN-GLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
           + L+ L L     L RLP  + QL +   +++  +    L +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 2   LKSLQSIEISNCSILKRF---------LEIPSCNIDGGIG-IERLASCKLVLEKCLSLQS 51
               +++     + L+ +               N            + ++      +L++
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 52  LPSSL--CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSL 109
               L         +LE+         P +   L  L+ + +D   + E+P+++ Q + L
Sbjct: 71  TADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 110 KILVLTNNGLKRLPESLNQLSSLKRLVLSDNP-LKILPK 147
           + L L  N L+ LP S+  L+ L+ L +   P L  LP+
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 5/103 (4%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           + S            +L        +     L   +       +              ++
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNN 57

Query: 109 LKILVLTNNGLKRLPESLNQLSS--LKRLVLSDNPLKILPKIL 149
            +I   T   LK   + L   +      L L   PL   P   
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQA 100

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFK 60
           L  L+ +++  C+ L+     P             A   +L+L+ C +L +LP  +    
Sbjct: 228 LPKLEELDLRGCTALR---NYPPI-------FGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 61  SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL 103
            L  L++  C N   LP  +  L A   ++V   L  ++ +  
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 9   EISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68
            I   + L + +   +           +       +     ++   S    K LT +E+ 
Sbjct: 443 AIQRLTKL-QIIYFANSPFTYDN--IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 69  DCQNFKILPYELGNLKALETLIVDG----------TLIREVPESLGQLSSLKILVLTNNG 118
           +C N   LP  L +L  L++L +                 + +       ++I  +  N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 119 LKRLPES--LNQLSSLKRLVLSDNPLKILPKILN 150
           L+  P S  L ++  L  L    N ++ L     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 9e-12
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGTLI-------REV 99
           L SL        +L  L  +D     F   P +  N   L+   +            R+ 
Sbjct: 740 LTSLSDDFR-ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 100 PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           P  +    SL  L + +N ++++ E L     L  L ++DNP   + 
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID 843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 42  VLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE--LGNLKALETLIVDGTLIREV 99
             +       L         +    +      +  P    L  +  L  L      +R +
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHL 588

Query: 100 PESLGQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPKILN 150
               G    L  L L  N ++ +PE        ++ L  S N LK +P I N
Sbjct: 589 EA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 24/166 (14%)

Query: 7   SIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLE 66
           + ++S     +  +      +D    +      +  + +   ++ +        SL   +
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS--RISLKDTQ 429

Query: 67  IIDCQN-FKILPYELGNLKALETLIVDG--------------------TLIREVPESLGQ 105
           I +  N    +   +  L  L+ +                                S   
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 106 LSSLKILVLT-NNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           L  L  + L     + +LP+ L  L  L+ L ++ N      ++  
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 14/104 (13%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN----------FKILPYELGNLKALETLIVDGTLIRE 98
           +Q  P+ L  F + + +  I   N           K       N   L T+ +    +  
Sbjct: 685 IQKFPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 99  VPESL--GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN 140
           + +      L  L  + ++ N     P      S LK   +   
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 10/105 (9%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--------SLG 104
                   + +++ +   +  K           + T+I+   L+  +PE        +  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 105 QLSSLKILVLTNNGLKRLPESL--NQLSSLKRLVLSDNPLKILPK 147
               L  + L  N L  L +      L  L  + +S N     P 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 14/111 (12%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--FKILP--YELGNLKALETLIVDGTLIREVPESL 103
            ++ +P           +E +   +   K +P  +   ++  + ++      I     ++
Sbjct: 606 QIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 104 G------QLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPK 147
                  +  +   + L+ N +++ P E     S +  ++LS+N +  +P+
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN------FKILPYELGNLKALETLIVDGTLIREVPES 102
             S P+       L +  I   ++       +  P  +    +L  L +    IR+V E 
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824

Query: 103 LGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
           L     L IL + +N    +   S+         VL  +  
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 3/118 (2%)

Query: 36  LASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL 95
             +     E  +        L     +T L +        +P  +G L  L+ L      
Sbjct: 299 SLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS 358

Query: 96  IREVPESLGQLSSLKILVLTNNGLKRL---PESLNQLSSLKRLVLSDNPLKILPKILN 150
                   G       +        R+      L+    L    L  + +   P++  
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           L  LP       SL  L + + Q    LP    +L   E L V   L+  +P    +   
Sbjct: 152 LTMLPELPT---SLEVLSVRNNQ-LTFLPELPESL---EALDVSTNLLESLPAVPVRNHH 204

Query: 109 LK----ILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            +          N +  +PE++  L     ++L DNPL    
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 6e-09
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 26/121 (21%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQL 106
           L+L SLP +L     +T LEI        LP    +L   E L      +  +PE    L
Sbjct: 69  LNLSSLPDNL--PPQITVLEITQNA-LISLPELPASL---EYLDACDNRLSTLPELPASL 122

Query: 107 -----------------SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
                            + L+ +   NN L  LPE     +SL+ L + +N L  LP++ 
Sbjct: 123 KHLDVDNNQLTMLPELPALLEYINADNNQLTMLPEL---PTSLEVLSVRNNQLTFLPELP 179

Query: 150 N 150
            
Sbjct: 180 E 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 83  LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
           +     L ++   +  +P++L     + +L +T N L  LPE       L+ L   DN L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRL 112

Query: 143 KILPKIL 149
             LP++ 
Sbjct: 113 STLPELP 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 8e-12
 Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQL 106
             L SLP+       L  L +   +    LP     LK    L+V G  +  +P     L
Sbjct: 211 NRLTSLPALPS---GLKELIVSGNR-LTSLPVLPSELK---ELMVSGNRLTSLPMLPSGL 263

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            SL    +  N L RLPESL  LSS   + L  NPL    
Sbjct: 264 LSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
            L SLP+       L  L   + Q    LP     L+    L V    +  +P    +L 
Sbjct: 152 QLASLPALPS---ELCKLWAYNNQ-LTSLPMLPSGLQ---ELSVSDNQLASLPTLPSELY 204

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
            L      NN L  LP      S LK L++S N L  LP + 
Sbjct: 205 KLWAY---NNRLTSLPAL---PSGLKELIVSGNRLTSLPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 7e-10
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQ 105
              L +LP  L     +T+L I D      LP     L+   TL V G  +  +P     
Sbjct: 49  ESGLTTLPDCL--PAHITTLVIPDNN-LTSLPALPPELR---TLEVSGNQLTSLPVLPPG 102

Query: 106 LSSLKILVLTNNGLKRLPESL--------------NQLSSLKRLVLSDNPLKILPKIL 149
           L  L I       L  LP  L                   L+ L +SDN L  LP + 
Sbjct: 103 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQL- 106
           +L SLP+       L +LE+   Q    LP     L  L       T +  +P  L +L 
Sbjct: 72  NLTSLPALPP---ELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127

Query: 107 -------------SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
                          L+ L +++N L  LP   ++L  L      +N L  LP + 
Sbjct: 128 IFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLW---AYNNQLTSLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           L SLP        L  L +   +    LP     L    +L V    +  +PESL  LSS
Sbjct: 233 LTSLPVLPS---ELKELMVSGNR-LTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSS 285

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
              + L  N L        +   +        P+
Sbjct: 286 ETTVNLEGNPLSERTLQALR--EITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 62  LTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGL 119
                +++     +  LP  L     + TL++    +  +P    +L +L+   ++ N L
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLE---VSGNQL 93

Query: 120 KRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
             LP     L  L         L  LP  L
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGL 123

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 5e-11
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLP-SSLCMFK 60
           L+   +++  +        ++ S  +        +   +    + L L     + LC  +
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLE----NSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 61  SLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
            L  +  +D  + ++  LP  L  L+ LE L      +  V   +  L  L+ L+L NN 
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR 519

Query: 119 LKRLPE--SLNQLSSLKRLVLSDNPLKILPK 147
           L++      L     L  L L  N L     
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
            + L   E+S         E+ SC     +  E       ++    +L  L       + 
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 62  LTSLEIID-----------CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLK 110
            ++L+ +D            +              +  L +    +  +   L QL  + 
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVT 466

Query: 111 ILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148
            L L++N L+ LP +L  L  L+ L  SDN L+ +  +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 504

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 19  FLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LP 77
            L      +     ++ +   +      L  + L  +  +      + ++   +  + + 
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 78  YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL 137
             L  L  +  L +    +R +P +L  L  L++L  ++N L+ +   +  L  L+ L+L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLL 515

Query: 138 SDNPLKILPKILN 150
            +N L+    I  
Sbjct: 516 CNNRLQQSAAIQP 528

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 17  KRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKIL 76
            R L +   ++     +E+L     +      L++LP +L   + L  L+  D     + 
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502

Query: 77  PYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132
              + NL  L+ L++    +++      L     L +L L  N L +      +L+ +
Sbjct: 503 G--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGT-------LIRE 98
            L  L        +L  L  ID     F   P +  N   L+   +           +RE
Sbjct: 499 KLTKLSDDFR-ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 99  VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            PE +    SL  L + +N ++++ E +    ++  L + DNP   + 
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREVPESL 103
            L+    +L        ++II      +    +   L  +K L  L      +     + 
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPKIL 149
           G    L  L L  N +  +P +       ++ L  + N LK +P I 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 37/173 (21%)

Query: 9   EISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68
            +   + L R   + +         E   +     E     ++        K LT +E+ 
Sbjct: 201 AVMRLTKL-RQFYMGNSPFVAENICEAWEN--ENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 69  DCQNFKILPYELGNLKALETLIVDGTLIREV----------------------------- 99
           +C N   LP  L  L  ++ + V                                     
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 100 -----PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
                  SL ++  L +L    N L+    +      L  L L+ N +  +P 
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 28/172 (16%)

Query: 2   LKSLQSIEISNCSILK------------RFLEIPSCNIDGGIGIERLASCKLVLEKCLSL 49
           LK L  +E+ NC  L             + + +       G  ++              +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 50  QSL------------PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97
           Q +             +SL   K L  LE +  Q  +      G+   L +L +    I 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQIT 366

Query: 98  EVPESL-GQLSSLKILVLTNNGLKRLPESLN--QLSSLKRLVLSDNPLKILP 146
           E+P +  G    ++ L   +N LK +P   +   +S +  +  S N +  + 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 5/104 (4%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
           ++  +  ++     L    + +         E    +  E         +        L 
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLK 249

Query: 108 SLKILVLT-NNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L  + +     L +LP  L  L  ++ + ++ N      ++ +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL--GNLKALETLIVDGTLIREVPESLGQ 105
           SL+    +      LTS+++   +    L  +     L  L  + +      + P     
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534

Query: 106 LSSLKILVLT-------NNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
            S+LK   +        N  L+  PE +    SL +L +  N ++ + +
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 33/159 (20%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSL--------- 52
           +  + +I+ S   I             G +  +          K +++ S+         
Sbjct: 401 VSVMSAIDFSYNEI-------------GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 53  --PSSLCMFKSLTSLEI-------IDCQNFKILPYELGNLKALETLIVDGTLIREVPESL 103
                      L+S+ +       I   + K       N   L ++ +    + ++ +  
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

Query: 104 --GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN 140
               L  L  + L+ N   + P      S+LK   + + 
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 10/101 (9%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 45  KCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETL---IVDGTLIREVPE 101
           K       P  +    S    + +     K            + +   I      + + +
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 102 SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
           S         +   +N +  + +++ +L+ L++  + ++P 
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF 218

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDGTLIR-EVPESLGQLSS 108
            +PSSL     L  L I    N    +P  +  L  L  L +  T +   +P+ L Q+ +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 109 LKILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL 142
           L  L  + N L   LP S++ L +L  +    N +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 76  LPYELGNLKALETLIVDG-TLIREVPESLGQLSSLKILVLTNNGLK-RLPESLNQLSSLK 133
                G+ K  + + +   +L  ++   +G   +L  L L NN +   LP+ L QL  L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 134 RLVLSDNPL 142
            L +S N L
Sbjct: 272 SLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDG-TLIREVPESLGQLSS 108
           ++P S   F  L +   I        +P    NL  L  + +    L  +     G   +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222

Query: 109 LKILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL 142
            + + L  N L   L   +    +L  L L +N +
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 59  FKSLTSLEIIDCQN--FKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115
             +   L  +D      + + Y     ++ LE L +    +  +      + +LK+L L+
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           +N L  +  +  Q   L+ L L  N +  L 
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQL 106
           L+ +      F  +  LE +   N ++  L      +  L+ L +    +  V  +  Q 
Sbjct: 260 LEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
             L+ L L +N +  L  S     +LK L LS N  
Sbjct: 318 DRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 61  SLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTN 116
           +L + +I+  +N  +  LP   L + + +E L ++   I E+   +     +++ L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 117 NGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
           N ++ LP      +  L  LVL  N L  LP+
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQ 105
              + + S+L        + I          +E   L   + +    + +R++P   L  
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 106 LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPK 147
              +++L L +  ++ +   +     ++++L +  N ++ LP 
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESL-G 104
           ++ + +    F    +++ +         + P+   N+  L  L+++   +  +P  +  
Sbjct: 81  IEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 105 QLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
               L  L ++NN L+R+  ++    +SL+ L LS N L  + 
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--FKILPYEL-GNLKALETLIVDGTLIREVPESLG 104
           +++ LP  +  F+++  L ++  +      LP  +  N   L TL +    +  + +   
Sbjct: 104 AIRYLPPHV--FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 105 Q-LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           Q  +SL+ L L++N L  +   L+ + SL    +S N L  L   + 
Sbjct: 162 QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIA 206

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 55  SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
            L       ++E +D  +  I          L  L +    + +    L     L  + L
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDL 255

Query: 115 TNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPKILN 150
           + N L+++      ++  L+RL +S+N L  L     
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLS 107
           + ++P  L    SLT L +   +  K+    L  L  L  L +    I  V   SL    
Sbjct: 183 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            L+ L L NN L ++P  L     ++ + L +N +  + 
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLG 104
            L    + +    F+ +  L  I   +  I     G   +L  L +DG  I +V   SL 
Sbjct: 156 PLKSSGIENG--AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK 213

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPKIL 149
            L++L  L L+ N +  +   SL     L+ L L++N L  +P  L
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLIREVPESLG 104
            +  + ++    K L +L  +      I  +    L N   L  L ++   + +VP  L 
Sbjct: 203 KITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260

Query: 105 QLSSLKILVLTNNGLKRLPES-------LNQLSSLKRLVLSDNPLKI 144
               ++++ L NN +  +  +         + +S   + L  NP++ 
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQ 105
           L L+ +P  L        L++ + +  +I   +  NLK L TLI+    I ++ P +   
Sbjct: 41  LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98

Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           L  L+ L L+ N LK LPE +    +L+ L + +N +  + K
Sbjct: 99  LVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRK 138

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESLG 104
            +  +      FK+L +L  +   N    KI P     L  LE L +    ++E+PE + 
Sbjct: 63  KITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM- 119

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
              +L+ L +  N + ++ +   N L+ +  + L  NPLK   
Sbjct: 120 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 64  SLEIIDC--QNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK 120
            L ++ C     + +P +L        L +    I E+ +     L +L  L+L NN + 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 121 RL-PESLNQLSSLKRLVLSDNPLKILP 146
           ++ P +   L  L+RL LS N LK LP
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELP 116

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 12/105 (11%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGTLIREVPES--- 102
           S+ ++ +      +   L  +   N     +P  L + K ++ + +    I  +  +   
Sbjct: 227 SISAVDNG--SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 103 ----LGQLSSLKILVLTNNGLKRL---PESLNQLSSLKRLVLSDN 140
                 + +S   + L +N ++     P +   +     + L + 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 41  LVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIRE 98
           L L +   L+ +      F+ L +L+ ++     I  +P  L  L  LE L + G    E
Sbjct: 176 LDLGELKKLEYISEG--AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE 232

Query: 99  VPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
           +   S   LSSLK L + N+ +  +   + + L+SL  L L+ N L  LP
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNF----KILPYELGNLKALETLIVDGTLIREVPESLG 104
           ++S+PS    F  + SL  +D         I       L  L+ L +    I+++P +L 
Sbjct: 159 IESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLT 215

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            L  L+ L ++ N    +   S + LSSLK+L + ++ + ++ +
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQ 105
             L  +P  +    +   L +++     I      +L  LE L +    IR++   +   
Sbjct: 64  RGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 106 LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
           L+SL  L L +N L  +P  +   LS L+ L L +NP++ +P
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 59  FKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVL 114
           F  L SL  ++  +     I       L  L  L +    I  +P  +  ++ SL  L L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 115 TN-NGLKRLPE-SLNQLSSLKRLVLSDNPLKILPKILN 150
                L+ + E +   L +LK L L    +K +P +  
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 50  QSLPSSLCMFKSLTSLEIIDCQNFKIL----PYELGNLKALETLIVDGTLIREV-PESLG 104
                SL       +L  +  +N + L      +L  L  L  L +  + +R V P++  
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 105 QLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
               L  L L+ N L+ L     Q  SL+ LVLS NPL
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 55  SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG-TLIREVP-ESLGQLSSLKIL 112
             C     + L          L + L   + L  L ++    ++ +    L  L  L+ L
Sbjct: 3   DACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 113 VLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
            +  +GL+ + P++ +    L RL LS N L+ L 
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 59  FKSLTSLEIIDCQN--FKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115
             +   L  +D      + + Y     ++ LE L +    +  +      + +LK+L L+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           +N L  +  +  Q   L+ L L  N +  L 
Sbjct: 310 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQL 106
           L+ +      F  +  LE +   N ++  L      +  L+ L +    +  V  +  Q 
Sbjct: 266 LEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
             L+ L L +N +  L   L+   +LK L LS N  
Sbjct: 324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKIL---PYELGNLKALETLIVDGTLIREVPESLG 104
           +++ LP++L    S   +E+++  + +I     Y       ++ L +    IR +P  + 
Sbjct: 62  TMRKLPAAL--LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 105 Q-LSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
           Q +  L +LVL  N L  LP  + +    L  L +S+N L+ +  
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 7e-06
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNN 117
             +   +   +    K+    L + + +E L ++   I E+   +     +++ L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
            ++ LP      +  L  LVL  N L  LP+
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 58  MFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILV 113
            F    +++ +         + P+   N+  L  L+++   +  +P  +      L  L 
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153

Query: 114 LTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILP 146
           ++NN L+R+ +      +SL+ L LS N L  + 
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 55  SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
            L       ++E +D  +  I          L  L +    + +    L     L  + L
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDL 261

Query: 115 TNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPKIL 149
           + N L+++      ++  L+RL +S+N L  L    
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           L+ +      F++ TSL+ +   + ++   +L  + +L    V   L+  +        +
Sbjct: 159 LERIEDDT--FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI----PIA 212

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           ++ L  ++N +  +   +     L  L L  N L     +LN
Sbjct: 213 VEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLN 252

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGTLIREVPESLGQL 106
           L+S+  +  +  +L +L  +D     F  +P      + +  L +  T IR V   +   
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--P 430

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            +L++L ++NN L         L  L+ L +S N LK LP
Sbjct: 431 QTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLP 467

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQ 105
            S  S+PS L    ++ SL++   +   I   +L     L+ LI+  + I  +  ++   
Sbjct: 15  RSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72

Query: 106 LSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
           L SL+ L L++N L  L  S    LSSLK L L  NP + L  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 49  LQSLPSSLCMFKSLTSLEIID------CQNFKILPYELGNLKALETLIVDG---TLIREV 99
           +  +P S    + L SLE +D       + +       G   +L+TL++       +++ 
Sbjct: 322 VFLVPCS--FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 100 PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            E L  L +L  L ++ N    +P+S      ++ L LS   ++++ 
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-----LPYELGNLKALETLIVDGTLIREVP 100
            +  + L +S C   +  SL+ +      +         L  LK L +L +       +P
Sbjct: 345 LMVEEYLKNSAC-KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 101 ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
           +S      ++ L L++ G++ +   +    +L+ L +S+N L      L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFL 450

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGT-LIREVPE- 101
            L SL SS   F  L+SL+ ++          +     NL  L+TL +       E+   
Sbjct: 85  HLSSLSSSW--FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 102 SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKIL 149
               L+SL  L +    L+    +SL  +  +  L L  +    L +I 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           ++ + +  C+ ++L  L++ +          L  L+    L +    ++ +P++      
Sbjct: 422 IRVVKT--CIPQTLEVLDVSNNN-LDSFSLFLPRLQ---ELYISRNKLKTLPDA-SLFPV 474

Query: 109 LKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142
           L ++ ++ N LK +P+   ++L+SL+++ L  NP 
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKI 111
              L    +L  L +   +   I      +L +LE L +    +  +  S  G LSSLK 
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 112 LVLTNNGLKRLPES--LNQLSSLKRLVLSDNPL 142
           L L  N  + L  +     L++L+ L + +   
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
           L S++ +E+ + ++ +   +     +D      +  + +  +    S   L   L     
Sbjct: 195 LSSVRYLELRDTNLAR--FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 62  LTSLEIIDCQNFKILPYELGNLKALETL------------IVDGTLIREVPESLGQLSSL 109
           L+ +E  DC    +  +       +  L            I    L  ++      L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 110 KILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
           K + + N+ +  +P      L SL+ L LS+N +    
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 33/164 (20%)

Query: 9   EISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQ------SLPSSLCMFKSL 62
            ++N S     L++ S N  G I      + K  L++ L LQ       +P +L     L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE-LYLQNNGFTGKIPPTLSNCSEL 420

Query: 63  TSL-------------EIIDCQNFKIL-----------PYELGNLKALETLIVDGTLIR- 97
            SL              +      + L           P EL  +K LETLI+D   +  
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 98  EVPESLGQLSSLKILVLTNNGLK-RLPESLNQLSSLKRLVLSDN 140
           E+P  L   ++L  + L+NN L   +P+ + +L +L  L LS+N
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGTLIR-EVPESLGQL 106
            +  +LC      +L+ +  QN      +P  L N   L +L +    +   +P SLG L
Sbjct: 383 PILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 107 SSLKILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL 142
           S L+ L L  N L+  +P+ L  + +L+ L+L  N L
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG-TLIREVPESLGQLSSL 109
                L    +     I              N  ++  L +    L   +P+ +G +  L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 110 KILVLTNNGLK-RLPESLNQLSSLKRLVLSDNPL 142
            IL L +N +   +P+ +  L  L  L LS N L
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 9   EISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQ------SLPSSLC-MFKS 61
              +CS+L   L + S N  G + ++ L   + +  K L L        LP SL  +  S
Sbjct: 313 FFGSCSLL-ESLALSSNNFSGELPMDTLLKMRGL--KVLDLSFNEFSGELPESLTNLSAS 369

Query: 62  LTSLEIIDCQNFKILPYELGN--LKALETLIVDG-TLIREVPESLGQLSSLKILVLTNNG 118
           L +L++        +   L       L+ L +       ++P +L   S L  L L+ N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 119 LK-RLPESLNQLSSLKRLVLSDN 140
           L   +P SL  LS L+ L L  N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 9   EISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQ------SLPSSLCMFKSL 62
            + +CS L + L+I    + G          +L L   L++        +P      KSL
Sbjct: 218 FLGDCSAL-QHLDISGNKLSGDFSRAISTCTELKL---LNISSNQFVGPIPPLPL--KSL 271

Query: 63  TSLEIIDCQNFKILPYEL-GNLKALETLIVDGT-LIREVPESLGQLSSLKILVLTNNGLK 120
             L + + +    +P  L G    L  L + G      VP   G  S L+ L L++N   
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 121 -RLP-ESLNQLSSLKRLVLSDNPL 142
             LP ++L ++  LK L LS N  
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGT-LIREVPE--SLG 104
              ++ SSL     L SL + +      +        +L +L +    L   V    SLG
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 105 QLSSLKILVLTNNGLKRL--PESLNQLSSLKRLVLSDNPL 142
             S LK L +++N L          +L+SL+ L LS N +
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNF----KILPYELGNLKALETLIVDGTLIREVPESLG 104
           ++S+PS    F  + SL  +D         I       L  L  L +    +RE+P +L 
Sbjct: 148 IESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT 204

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            L  L  L L+ N L  +   S   L  L++L +  + ++++ +
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 41  LVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIRE 98
           L L +   L  +      F+ L++L  ++     +  +P  L  L  L+ L + G  +  
Sbjct: 165 LDLGELKRLSYISEG--AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221

Query: 99  VPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
           +   S   L  L+ L +  + ++ +   + + L SL  + L+ N L +LP
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETL-IVDGTLIREVPE-SL 103
           L ++P+    F  L+ L+ +  +N     I  Y    + +L  L + +   +  + E + 
Sbjct: 124 LTTIPNG--AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 104 GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
             LS+L+ L L    L+ +P +L  L  L  L LS N L  + 
Sbjct: 182 EGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR 223

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 86  LETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143
              L +    I+ +   S   L  L+IL L+ N ++ +   + N L++L  L L DN L 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 144 ILP 146
            +P
Sbjct: 126 TIP 128

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 59  FKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
               + ++ +D +  +I          +   LE L +    I +V   +   + LK L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDL 198

Query: 115 TNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
           ++N L  +       + +  + L +N L ++ K L
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 58  MFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115
           +  S  +LE ++ Q   I  +         L+TL +    +  +       + +  + L 
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           NN L  + ++L    +L+   L  N      
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQL 106
           ++  +  +          ++ D    + L     +   ++ L + G  + ++    L   
Sbjct: 1   AIHEIKQNG---NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           + L++L L++N L    + L  LS+L+ L L++N ++ L 
Sbjct: 58  TKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 11/100 (11%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQL 106
           +  +   +        L+ +D  + K+  +  E  +   +  + +    +  + ++L   
Sbjct: 181 IYDVKGQVV----FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            +L+   L  NG            + +   ++   +K L 
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 82  NLKALETLIVDGTLIREVPESLGQ-LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSD 139
           N    +   V  + +++   SL Q   ++K L L+ N L ++    L   + L+ L LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 140 NPLKILPKILN 150
           N L     + +
Sbjct: 68  NVLYETLDLES 78

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117
                S+E +   N  I        +  + + +    I  + +   G  S ++ L L  N
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 118 GLKRLP--ESLNQLSSLKRLVLSDNPLKILPKILN 150
            +  +   E      +L+ L L  N +  +   + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLS 107
           L  +P  L   ++L  L +   +   I   +L     L  L +    IR +   SL  L 
Sbjct: 184 LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           +L+ L L NN L R+P  L  L  L+ + L  N +  + 
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQ 105
           L L+++P  +      T L++ +    ++   +   L+ L  L++    I ++ E +   
Sbjct: 43  LGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100

Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           L  L+ L ++ N L  +P +L   SSL  L + DN ++ +PK
Sbjct: 101 LRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPK 140

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQL 106
            L++       F  L  L  +     K+        + L  L +D   I+ +    L + 
Sbjct: 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY 216

Query: 107 SSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPKIL 149
           S L  L L +N ++ +   SL+ L +L+ L L +N L  +P  L
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLIREVPESLG 104
            +Q++          + L  +   + +I  +    L  L  L  L +D   +  VP  L 
Sbjct: 204 KIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261

Query: 105 QLSSLKILVLTNNGLKRLPES-------LNQLSSLKRLVLSDNPLKIL 145
            L  L+++ L  N + ++  +         + +    + L +NP+   
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS- 107
           L  +P +L    SL  L I D +  K+       L+ +  + + G  +       G    
Sbjct: 114 LVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 108 -SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
             L  L ++   L  +P+ L    +L  L L  N ++ + 
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIE 209

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 64  SLEIIDC--QNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK 120
            L ++ C     K +P E+        L +    I E+ +     L  L  LVL NN + 
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 121 RLPE-SLNQLSSLKRLVLSDNPLKILP 146
           ++ E + + L  L++L +S N L  +P
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIP 118

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
           L S+  I  +N  I                 ++ +     V +  L+   L + +    +
Sbjct: 42  LNSIDQIIANNSDIKS---------------VQGIQYLPNVTKLFLNGNKL-TDIKPLTN 85

Query: 62  LTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLK 120
           L +L  +     KI     L +LK L++L ++   I ++   L  L  L+ L L NN + 
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT 144

Query: 121 RLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            +   L++L+ L  L L DN +  +  +  
Sbjct: 145 DI-TVLSRLTKLDTLSLEDNQISDIVPLAG 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQ 105
           L L  +P  L    ++T L +   Q  ++          L +L V    I ++ PE   +
Sbjct: 14  LKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71

Query: 106 LSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
           L  LK+L L +N L +L + +    ++L  L L  N ++ +  
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKI 111
             +     +LT L ++     KI        K L TL +    +      +  QL +L+ 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 112 LVLTNNGLKRLPE---SLNQLSSLKRLVLSDNPLKILPK 147
           L+L+NN ++ L      +   SSLK+L LS N +K    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREV--P 100
             SL++L +   +  + + L I++       KI       L  LE L +    I +    
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 101 ESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKILN 150
           +    L ++  + L+ N   +L   S   + SL+RL+L    LK +    +
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 58  MFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILV 113
             K L+ L I++ ++    +I      +L  L+ + +    +  +P S      SLK L 
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 114 LTNNGLKRLPESL--NQLSSLKRLVLSDNPL 142
           L  N +  + + +      +L  L +  NP 
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 58  MFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDGTLIREV---PESLGQLSSLKI 111
            ++ L ++  I     +  ++       + +L+ L++    ++ V   P     L +L I
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 112 LVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
           L L+NN +  + +  L  L  L+ L L  N L  L K
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETL---------IVDGTL 95
           +L+++ SS   F+ L +L I+D  N     I    L  L+ LE L         +     
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 96  IREVPESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
                  L  LS L IL L +NG   +  E    L  LK + L  N L  LP
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN----FKILPYELGNLKALETLIVDGTLIREV-PES 102
            +  + S    F  L  LE++D        ++   E   L+ +  + +      ++   S
Sbjct: 392 KISKIESD--AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 103 LGQLSSLKILVLTNNGLKRL---PESLNQLSSLKRLVLSDNPLKILP 146
              + SL+ L+L    LK +   P     L +L  L LS+N +  + 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE--- 101
           S+Q + ++   F    +L  +D  +             L+ L+ L++    I+ +     
Sbjct: 108 SIQKIKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 102 SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPL 142
            +   SSLK L L++N +K   P   + +  L  L L++  L
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDG-TLIREVPESL 103
            +Q+L S      + +SL+ ++  +    +  P     +  L  L ++   L   + E L
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 104 G---QLSSLKILVLTNNGLKRLPESL---NQLSSLKRLVLSDNPLKILPK 147
                 +S++ L L+N+ L     +     + ++L  L LS N L ++  
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 51  SLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLK--ALETLIVDGTLIREV-PESLG 104
           SL   LC+  + TS+  +   N ++          LK   L  L +    +  V  +S  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 105 QLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDN 140
            L  L+   L  N ++ L   SL+ L +++ L L  +
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 48  SLQSLPS--SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLG 104
           SL  L +   L + +S T   I      KI  +    LK LE L ++   I  +      
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 105 QLSSLKILVLTNNGLKRLPESLNQL-----SSLKRLVLSDNPLKILP 146
            L +LK L L+N+       +         S L  L L+ N +  + 
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESLG---QL 106
           P        L  L + + Q    L  +L       ++  L +  + +     +     + 
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 107 SSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
           ++L +L L+ N L  +  +S   L  L+   L  N ++ L 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQ 105
           L+   +P +L    S  +L++       +  Y   +   L+ L +    I+ +   +   
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 106 LSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
           LS L  L+LT N ++ L   + + LSSL++LV  +  L  L 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKI 111
             S   F  L  L++  C+   I      +L  L TLI+ G  I+ +   +   LSSL+ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 112 LVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
           LV     L  L    +  L +LK L ++ N ++   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 58  MFKSLTSLEIIDCQN----FKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKIL 112
           +F  L+SLE++           LP     L+ L  L +    + ++ P +   LSSL++L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 113 VLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPK 147
            +++N    L       L+SL+ L  S N +    K
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE--VPESLG 104
           L   S  S     ++L  L+I               L +LE L + G   +E  +P+   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 105 QLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
           +L +L  L L+   L++L P + N LSSL+ L +S N    L 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 59  FKSLTSLEIIDCQNFKI-----LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILV 113
              L SLE +D     +              +L+ L +    +  +  +   L  L+ L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 114 LTNNGLKRL--PESLNQLSSLKRLVLSDNPLKILP 146
             ++ LK++        L +L  L +S    ++  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 57  CMFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKIL 112
            +F  L +L  +D   CQ  ++ P    +L +L+ L +       +       L+SL++L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 113 VLTNNGLKRLPESL--NQLSSLKRLVLSDNPL 142
             + N +    +    +  SSL  L L+ N  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLK 110
             +     SL  L  ++     +  + +G+LK L+ L V   LI+    PE    L++L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 111 ILVLTNNGLKRL-PESLNQLSSLK----RLVLSDNPLKILP 146
            L L++N ++ +    L  L  +      L LS NP+  + 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL-GNLKALETLIVDGTLIREVPESLGQLS 107
           L +   +       T L  ++    ++   ++ G L  L TL +    ++ +P     L 
Sbjct: 43  LYTFSLAT--LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 108 SLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
           +L +L ++ N L  LP      L  L+ L L  N LK LP
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
           +L +LP  L   K  T L + +   +      L     L  L +D   + ++    G L 
Sbjct: 21  NLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLP 77

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            L  L L++N L+ LP     L +L  L +S N L  LP
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLS 107
           LQSLP       +LT L++   +   +    L  L  L+ L + G  ++ +P  L     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 108 SLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
            L+ L L NN L  LP  L N L +L  L+L +N L  +PK
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN--FKILPYEL-GNLKALETLIVDGTLIREVPESL-G 104
           L SLP      + L  L+ +  +    K LP  L      LE L +    + E+P  L  
Sbjct: 112 LTSLPLGA--LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 105 QLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNP 141
            L +L  L+L  N L  +P+       L    L  NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 14/151 (9%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKS 61
           L SL+ +++S   +   F    S +  G   ++ L      L     + ++ S+    + 
Sbjct: 346 LPSLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYL-----DLSFN-GVITMSSNFLGLEQ 397

Query: 62  LTSLEIIDCQNFKILPYE--LGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNNG 118
           L  L+       K +       +L+ L  L +  T  R         LSSL++L +  N 
Sbjct: 398 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 119 LKR--LPESLNQLSSLKRLVLSDNPLKILPK 147
            +   LP+   +L +L  L LS   L+ L  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQ 105
           L+   +P +L    S  +L++       +  Y   +   L+ L +    I+ +   +   
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 106 LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
           LS L  L+LT N ++ L   + + LSSL++LV  +  L  L 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN----FKILPYELGNLKALETLIVDGTLIREVPES-L 103
            +   + +  F  L+SLE++           LP     L+ L  L +    + ++  +  
Sbjct: 433 TRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 104 GQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142
             LSSL++L + +N LK +P+   ++L+SL+++ L  NP 
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 49  LQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQL 106
           L+ L S S   F  L  L++  C+   I      +L  L TLI+ G  I+ +   +   L
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 107 SSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
           SSL+ LV     L  L    +  L +LK L ++ N ++   
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 20/162 (12%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLP-------- 53
           L ++ S  + + +I      +   + + G     L +CK      L L+SL         
Sbjct: 281 LTNVSSFSLVSVTIE----RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 54  -SSLCMFKSLTSLEIID-----CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
             +      L SLE +D                    +L+ L +    +  +  +   L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 108 SLKILVLTNNGLKRLPES--LNQLSSLKRLVLSDNPLKILPK 147
            L+ L   ++ LK++ E      L +L  L +S    ++   
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKIL---PYELGNLKALETLIVDGTLIREVPE-SL 103
            +Q++      ++SL+ L  +      I          L +L+ L+   T +  +    +
Sbjct: 63  EIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 104 GQLSSLKILVLTNNGLKRL--PESLNQLSSLKRLVLSDNPLKILPK 147
           G L +LK L + +N ++    PE  + L++L+ L LS N ++ +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 48  SLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLG 104
            +QSL   +     SL  L  ++     +  + +G+LK L+ L V   LI+    PE   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 105 QLSSLKILVLTNNGLKRLP-ESLNQLSSLK----RLVLSDNPLKILPK 147
            L++L+ L L++N ++ +    L  L  +      L LS NP+  +  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 86  LETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLK 143
            + L +    +R +   S      L++L L+   ++ +   +   LS L  L+L+ NP++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 144 ILPK 147
            L  
Sbjct: 90  SLAL 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 41  LVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREV 99
           L +     L ++  +     +LTSL I  C N   +PY  + +L  L  L +    I  +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 100 PE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
               L +L  L+ + L    L  +   +   L+ L+ L +S N L  L +
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQ 105
               ++P  +        L++   +   +   E  +   LE L ++  ++  V   +   
Sbjct: 21  KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

Query: 106 LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
           L +L+ L L +N LK +P      LS+L +L +S+N + IL 
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE-SL 103
           +L ++P      + L  L  ++        I    L  L  L+ + + G  +  V   + 
Sbjct: 235 NLTAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPL 142
             L+ L++L ++ N L  L ES+ + + +L+ L+L  NPL
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 59  FKSLTSLEIIDCQN--FKILPYE-LGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVL 114
           F +L +L  +  ++   K++P      L  L  L +    I  + +     L +LK L +
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 115 TNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            +N L  +   + + L+SL++L L    L  +P 
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGT-LIREVPESLG 104
           L S+P+       L  L ++  ++     I  Y    L  L+ L +     +  +  +  
Sbjct: 164 LTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
              +L  L +T+  L  +P  ++  L  L+ L LS NP+  + 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLG 104
           L  +      F  L SLE +    C    I    L +L  L  L +    I  + + S  
Sbjct: 140 LVYISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 105 QLSSLKILVLT-NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           +L  LK+L ++    L  +  +     +L  L ++   L  +P
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 86  LETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143
              L +    I+ + +        L+ L L  N +  +   + N L +L+ L L  N LK
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 144 ILPK 147
           ++P 
Sbjct: 94  LIPL 97

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL-G 104
           L+ L S    F S   L+++D    +I   E G   +L  L TLI+ G  I+ +      
Sbjct: 40  LRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 105 QLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
            LSSL+ LV     L  L       L +LK L ++ N ++   
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 49  LQSLPSSLCMFKSLTSLE---IIDCQNFKILPYELGNLKALETLIVDGTLIREVPES--L 103
           +QSL      F  L+SL+    ++     +  + +G+LK L+ L V   LI+        
Sbjct: 88  IQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLK----RLVLSDNPLKILP 146
             L++L+ L L++N ++ +    L  L  +      L LS NP+  + 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQL 106
           +   +P +L    S  +L++       +  Y   +   L+ L +    I+ + +     L
Sbjct: 18  NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 107 SSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
           S L  L+LT N ++ L     + LSSL++LV  +  L  L 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN--FKILPYE----LGNLKALE-TLIVDGTLIREVPE 101
           +QS       F +LT+LE +D  +   + +       L  +  L  +L +    +  +  
Sbjct: 136 IQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 102 SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP 141
              +   LK L L  N LK +P+   ++L+SL+++ L  NP
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQN-----FKILPYELGNLKALETLIVDGTLIREVPESL 103
           LQSLP    +F  LT L  +   +                 +L+ L +    +  +  + 
Sbjct: 40  LQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97

Query: 104 GQLSSLKILVLTNNGLKRLPES--LNQLSSLKRLVLSDNPLKILP 146
             L  L+ L   ++ LK++ E      L +L  L +S    ++  
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQ- 105
             L S+P+ +    S T LE+   +   +       L  L  L +    +          
Sbjct: 17  KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 106 --LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
              +SLK L L+ NG+  +  +   L  L+ L    + LK + 
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKIL----PYELGNLKALETLIVDGTLIREVPE-S 102
             +   +   +F  L+SLE++            P     L+ L  L +    + ++   +
Sbjct: 137 HTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 103 LGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
              LSSL++L +++N    L       L+SL+ L  S N +    K
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDG--TLIREVPESL 103
           L+ +     +F SL +L  +D                L +LE L + G       +P+  
Sbjct: 113 LKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            +L +L  L L+   L++L   + N LSSL+ L +S N    L  
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 41  LVLEKCLSLQSLPSSLCMFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDGTLIR 97
           L +      ++    +  F  L +L  +D   CQ  ++ P    +L +L+ L +      
Sbjct: 155 LKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 98  EVPES-LGQLSSLKILVLTNNGLKRLPESL--NQLSSLKRLVLSDNPL 142
            +       L+SL++L  + N +    +    +  SSL  L L+ N  
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKI 111
            ++     +LT L++  CQ + I      +   L+TL++    +  +   +L    +LK 
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109

Query: 112 LVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
           L     G+  +    L+   +L+ L L  N +  + 
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQ 105
           L L  +P +L    S   LE        I       L  L  L +    I  +  ++   
Sbjct: 22  LGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 106 LSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
              L  LVLT N L  +   +L+   +LK L      +  + 
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESL 103
           +  + +  ++       S+E I+ Q    F I          L+ L +  T + E+P  L
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL 297

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143
             LS+LK LVL+ N  + L + S +   SL  L +  N  +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKI 111
             +      L +L +       +    L   KAL+ L    T I  +    L    +L+ 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 112 LVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPK 147
           L L +N +  +          LK L   +N +  L K
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 48  SLQSLPSSLCMFKSLTSLEIID----CQNFKILPYELGNLKALETLIVDG---TLIREVP 100
             ++L        +  SL  +      +  ++    L NL+ L  L +            
Sbjct: 312 KFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 101 ESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILP 146
             L  LS L+ L L+ N    L  E+  +   L+ L L+   LK+  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG--TLIREVPESLGQ 105
            L  LPS L    +L  L +   +   +      N  +L  L + G    +      L  
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 106 LSSLKILVLTNNGLKRLP---ESLNQLSSLKRLVLSDNPLKILPK 147
           L +L+ L L+++ ++        L  LS L+ L LS N    L  
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKA--LETLIVDGTLIREV-PESLGQLSSLKILVLT 115
            +SL      D  +  I P     L    +E++ +       +   +    S L+ L LT
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
              L  LP  L  LS+LK+LVLS N  + L 
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLC 317

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN----FKILPYELGNLKALETLIVDGTLIREVP-ES 102
              SL +    FK    LE++D        K       NL  L+ L +  +L+     + 
Sbjct: 387 EPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 103 LGQLSSLKILVLTNNGLKRL----PESLNQLSSLKRLVLSDNPLKILPK 147
              L +L+ L L  N   +       SL  L  L+ LVLS   L  + +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 10/158 (6%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLS---LQSLPSSLCM 58
            ++L  I  SN   L   L I        +G   L + + + E  LS   +++       
Sbjct: 313 FENLCQISASNFPSLT-HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 59  FKSLTSLEIIDCQNFKIL---PYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILV 113
            ++L+ L+ ++    + L            LE L +  T ++          L  LK+L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 114 LTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPKILN 150
           L+++ L     +  + L +L+ L L  N          
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN------FKILPYELGNLKALETLIVDGTLIREVP- 100
            L      L  F  L +L+ ++ Q              L  L  LE L++    +  +  
Sbjct: 436 LLDISSEQL--FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 101 ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
            +   L  +  + L++N L               L L+ N + I+ 
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 48  SLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP-ESLGQ 105
            L  +   +L   K+L  L  I      I    L N K LE+L +    I  +       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 106 LSSLKILVLTNNGLKRL-PESLNQLSSLKRLVL--SDNPLKILP 146
              LK+L   NN +  L  E ++ L     L L  + N +  + 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 59  FKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115
            ++L  LEI+         I  +   +LK +  + +    +               L L 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 116 NNGLKRLPES-LNQLSSLKRLVLSDNPL 142
           +N +  +  S L  LS  + + L  NPL
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPL 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKI 111
             S   F  L  L++  C+   I       L  L  LI+ G  I+   P S   L+SL+ 
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 112 LVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
           LV     L  L    + QL +LK+L ++ N +    
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIID----CQNFKILPYELGNLKALETLIVDGTLIREVPE-S 102
           + +       +F  LTSL  +           L     N   L  L +    + ++    
Sbjct: 435 NTKIDFDG--IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 103 LGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147
              L  L++L +++N L  L  S  NQL SL  L  S N ++    
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLK 110
            S+    + L  L+I               L +L TL + G   ++          ++L 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 111 ILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            L L+   L+++     + L  L+ L +S N L  L  
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 53  PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKI 111
             +      L++L +         P     L +LE L+   T +  +    +GQL +LK 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 112 LVLTNNGLKRL--PESLNQLSSLKRLVLSDNPLKILPK 147
           L + +N +     P   + L++L  + LS N ++ +  
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 57  CMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKIL 112
            +F + T+L  +D       +I       L  L+ L +    +  +  S   QL SL  L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

Query: 113 VLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
             + N ++       +   SL    L++N +
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 45  KCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPE-- 101
           + LS+            L  L+ +     K  + ++   L +L  L +    +       
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 102 -SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148
            S    +SL+ L L+ NG   +  +   L  L+ L    + LK + + 
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 4   SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPS-SLCMFKSL 62
            L  + +         ++    N+ G      L   +L+L +    ++L      + + L
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAG------LHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 63  TSLEIIDC-----QNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117
             + I +       +F     +   L  +  + + G  I+ +   + +    + L +   
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317

Query: 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            LK+ P     L  LK L L+ N   I  K + 
Sbjct: 318 QLKQFPT--LDLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREVP-ES 102
            L SL S       L +L+ ++  +  I    LP    NL  L  + +    I+ +    
Sbjct: 115 KLASLESF--PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 103 LGQLSSLKI----LVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
           L  L         L ++ N +  + +   Q   L  L L  N  
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 54  SSLCMFKSLTSLEIIDCQN--FKILPYE--LGNLKALETLIVDGTLIREVPES------L 103
             L     +  L+I+      F     +       +LE L +   +++   E+       
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 104 GQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPK 147
             LS L++L L +N L  LP    + L++L+ L L+ N L +L  
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 4   SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLS---LQSLPSSLCMFK 60
            L+ +++S              N         L     ++        ++    +     
Sbjct: 205 VLEILDVSGNGWTVDITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 61  SLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTN 116
           + +S+  +D  +   F +       LK L+ L +    I ++ + +   L +L++L L+ 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 117 NGLKRLP-ESLNQLSSLKRLVLSDNPLKILPK 147
           N L  L   +   L  +  + L  N + I+  
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 48  SLQSLPSSLCMFKSLTSLEIID----CQNFKILPYELGNLKALETLIVDGTLIREVPES- 102
            ++++ +S   F  L  L++++         I      NL  L  L +  + I  +    
Sbjct: 35  YIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92

Query: 103 LGQLSSLKILVLTNNGLKRL---PESLNQLSSLKRLVLSDNPLKILP 146
              L  L  L L   GL            L +L RL LS N ++ L 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--------FKILPYELGNLKALETLIVDGTLIREV 99
              S            SLE +             ++       L  L+ L ++   +  +
Sbjct: 437 RFSSCSGD-QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 100 P-ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           P      L++L+ L L +N L  L  +    ++L+ L +S N L     
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNP 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIID---CQNFKILPYELGNLKALETLIVDGTLIREVP-ESL 103
            + SL S   +F++L  L++++    +  KI       L  L+ L +   L+ E+   + 
Sbjct: 277 FVFSLNSR--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
             L  +  + L  N +  + + +   L  L+ L L DN L  + 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV---PES 102
              L     +     +L  L++   + + + P     L  L  L +    + +       
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 103 LGQLSSLKILVLTNNGLKRLPE--SLNQLSSLKRLVLSDNPLKILPK 147
              L +L  L L+ N ++ L    S  +L+SLK +  S N + ++ +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 58  MFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115
           +  S  +LE ++ Q      +  ++     L+TL +    +  +       + +  + L 
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
           NN L  + ++L    +L+   L  N      
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 59  FKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
               + ++ +D +  +I          +   LE L +    I +V   +   + LK L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDL 198

Query: 115 TNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           ++N L  +       + +  + L +N L ++ K L 
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 61  SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGL 119
                ++ D    + L     +   ++ L + G  + ++    L   + L++L L++N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 120 KRLPESLNQLSSLKRLVLSDNPLKILP 146
               + L  LS+L+ L L++N ++ L 
Sbjct: 71  YETLD-LESLSTLRTLDLNNNYVQELL 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 11/101 (10%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQ 105
            +  +   +        L+ +D  + K+  +  E  +   +  + +    +  + ++L  
Sbjct: 180 FIYDVKGQVV----FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
             +L+   L  NG            + +   ++   +K L 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
            +SL++L  +D  N  +   EL    ++ETL      I  V  S GQ    K + L NN 
Sbjct: 76  LESLSTLRTLDLNNNYVQ--ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNK 131

Query: 119 LKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
           +  L +      S ++ L L  N +  +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE--- 101
           SL+   +SL   +S  +++ +D       +I   +L     LE L +   ++ E  +   
Sbjct: 21  SLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLES 78

Query: 102 ---------------SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
                           L    S++ L   NN + R+  S       K + L++N + +L 
Sbjct: 79  LSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLR 136

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLIREVPE-SLG 104
           LQ L   L  F+ L +L+ +  Q+  +  LP +   +L  L  L + G  I  VPE +  
Sbjct: 117 LQELGPGL--FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            L SL  L+L  N +  +   +   L  L  L L  N L  LP 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKIL----PYELGNLKALETLIVDGTLIREVPE-SL 103
           L  + ++   F  L  LE +D  +   L    P     L  L TL +D   ++E+     
Sbjct: 68  LARIDAAA--FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
             L++L+ L L +N L+ LP+ +   L +L  L L  N +  +P
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGTLIREVPE-SL 103
           +LQ+LP     F+ L +L  +     +I          L +L+ L++    +  V   + 
Sbjct: 140 ALQALPDDT--FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 104 GQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142
             L  L  L L  N L  LP   L  L +L+ L L+DNP 
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 16/158 (10%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEK-------CLSLQSLPS 54
             S+ ++++S       F E  +      I   ++ S  L             + +   +
Sbjct: 211 NTSITTLDLSGN----GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 55  SLCMFKSLTSLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLK 110
                   + ++  D      F +L     +   LE L +    I ++ + +   L+ L 
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 111 ILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
            L L+ N L  +       L  L+ L LS N ++ L  
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPE-SL 103
            + +L  S+  F   T LE +     +I   +      L  L  L +    +  +     
Sbjct: 286 KIFALLKSV--FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
             L  L++L L+ N ++ L + S   L +LK L L  N LK +P
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYEL-GNLKALETLIVDGTLIREVPE-SLG 104
           +  +  +   F  LT L  ++     +  +   +  NL  LE L +    IR + + S  
Sbjct: 311 INKIDDNA--FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368

Query: 105 QLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142
            L +LK L L  N LK +P+   ++L+SL+++ L  NP 
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 40  KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN--FKILPYE-LGNLKALETLIVDGTLI 96
            L +E+      + ++   F+ L+SL I+      F  L       L  LE L +    +
Sbjct: 58  FLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 97  REV---PESLGQLSSLKILVLTNNGLKRLPES--LNQLSSLKRLVLSDNPLKILPK 147
                       L+SL++LVL +N +K++  +     +     L L+ N +K + +
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLG 104
             L  +P    +   +  +++      ++       L+ L+ L V+      V    +  
Sbjct: 20  RGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 105 QLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLK 143
            LSSL IL L  N   +L     N L++L+ L L+   L 
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN----FKILPYELGNLKALETLIVDGT-LIREVPES 102
            L+ L     M   + SL+ +D       +     +    K+L +L +    L   +   
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 103 LGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           L     +K+L L +N +K +P+ + +L +L+ L ++ N LK +P 
Sbjct: 419 L--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQL 106
            L  +P  L   +  T L I      ++   ++ +L  L  LI+    I+ +  S     
Sbjct: 11  GLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68

Query: 107 SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
             L+ L L++N L ++    +   +LK L LS N    LP 
Sbjct: 69  QELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPI 107

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 33  IERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVD 92
           +   +   + L+  L  +    S    K+L+  +++         Y       +      
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 93  GTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPKI 148
            +  R V      ++S    L  +NN L     E+   L+ L+ L+L  N LK L KI
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 16/123 (13%)

Query: 40  KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNL-------------KAL 86
           +  L    +L  +P      KS T       +  +  P   G               +  
Sbjct: 14  QEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73

Query: 87  ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
             L ++   +  +PE    L SL     + N L  LPE    L SL     +   L  LP
Sbjct: 74  HELELNNLGLSSLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 147 KIL 149
            +L
Sbjct: 131 PLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 13/105 (12%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQN--FKILPYELGNLKALETLIVDGTLIREVPESLGQ 105
            L+ LP      ++ + L+IID  N   K LP    +L   E +      + E+PE L  
Sbjct: 142 QLEKLPE----LQNSSFLKIIDVDNNSLKKLPDLPPSL---EFIAAGNNQLEELPE-LQN 193

Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           L  L  +   NN LK+LP+      SL+ +V  +N L+ LP++ N
Sbjct: 194 LPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQN 235

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQL 106
             +       C+ +    LE+ +      LP    +L   E+L+     + E+PE    L
Sbjct: 58  REMAVSRLRDCLDRQAHELEL-NNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSL 113

Query: 107 SSLKILVLTNNGLKRLPESL----------------NQLSSLKRLVLSDNPLKILPKIL 149
            SL +       L  LP  L                   S LK + + +N LK LP + 
Sbjct: 114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 23/121 (19%)

Query: 46  CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-- 103
            L L SLP        L SL +  C +   LP    +LK+L     +   + ++P  L  
Sbjct: 80  NLGLSSLPELP---PHLESL-VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135

Query: 104 --------------GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
                            S LKI+ + NN LK+LP+      SL+ +   +N L+ LP++ 
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQ 192

Query: 150 N 150
           N
Sbjct: 193 N 193

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLS 107
           SL+ LP       SL S+   +    + LP EL NL  L T+  D  L++ +P+      
Sbjct: 206 SLKKLPDLPL---SLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLKTLPDLPP--- 257

Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           SL+ L + +N L  LPE    L+ L       + L  LP 
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS 108
           L  LP+       L  L          +P    NLK    L V+   +RE P+    +  
Sbjct: 329 LIELPALPP---RLERLIASFNH-LAEVPELPQNLK---QLHVEYNPLREFPDIPESVED 381

Query: 109 LKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           L++    N+ L  +PE      +LK+L +  NPL+  P I  
Sbjct: 382 LRM----NSHLAEVPELP---QNLKQLHVETNPLREFPDIPE 416

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 21/115 (18%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQL-- 106
           L++LP       SL +L + D      LP    +L  L+      + + E+P +L  L  
Sbjct: 249 LKTLPDLPP---SLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 107 ------------SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
                        SL+ L ++NN L  LP        L+RL+ S N L  +P++ 
Sbjct: 305 SSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELP 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 59  FKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116
            ++L  L  I   N  +  LP    +L+    L V    + ++PE    L+ L +     
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 117 NGLKRLPESL--------------NQLSSLKRLVLSDNPLKILPKIL 149
           +GL  LP +L              +   SL+ L +S+N L  LP + 
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 336

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQL 106
           SL S+PS L   +++ SL++ + +   I   +L     L+ L++    I  + E S   L
Sbjct: 42  SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99

Query: 107 SSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
            SL+ L L+ N L  L  S    LSSL  L L  NP K L 
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI-----------LPYELGNLKALETLIVDGTLIR 97
              L          +S+E ++ ++  +               L        + +    + 
Sbjct: 210 HILLLEIF--VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 98  EVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142
           +V + L Q+S L  L  + N LK +P+   ++L+SL+++ L  NP 
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGTLIREVP----- 100
           LQS        KS+ ++  +     +    L   +    ++E L +  T +         
Sbjct: 186 LQSYEPK--SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 101 ----ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
                SL +  + + + +T+  L ++ + LNQ+S L  L  S N LK +P 
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI-------LPYELGNLKALETLIVDGTLIREVPE 101
           L +L SS   FK L+SL  ++             L   L  L+ L     +     ++  
Sbjct: 112 LSNLSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG--NMDTFTKIQR 167

Query: 102 -SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPKIL 149
                L+ L+ L +  + L+    +SL  + ++  L+L      +L +I 
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
            LQ+LP    +F  L +L  +     ++         +L  L  L +    ++ +P+ + 
Sbjct: 96  KLQALPIG--VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
            +L+SLK L L NN LKR+PE   ++L+ LK L L +N LK +P
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQL 106
            L ++PS++        L++   +   +       L  L  L ++   ++ +P  +  +L
Sbjct: 27  KLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84

Query: 107 SSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILP 146
            +L+ L +T+N L+ LP  + +QL +L  L L  N LK LP
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYEL-GNLKALETLIVDGTLIREVPESL-G 104
           L+SLP  +  F SLT L  +     ++  LP  +   L +L+ L +    ++ VPE    
Sbjct: 121 LKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP 141
           +L+ LK L L NN LKR+PE + + L  LK L L +NP
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 33  IERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIV 91
             +  +     E  L    +P    +  +L   + ID  + +I   +    L+ L+TL+V
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 71

Query: 92  DGTLIREVPESLGQ-LSSLKILVLTNNGLKRLPE--SLNQLSSLKRLVLSDNPL 142
           +   I  + E L Q L  L  L+LTNN L  L +   L  L SL  L +  NP+
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILV 113
           S +     LTSL+ +   N       L NL  LE L +    + +    L +L++L+ L+
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLI 205

Query: 114 LTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            TNN +  +   L  L++L  L L+ N LK +  + +
Sbjct: 206 ATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLAS 241

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           S+L     LT L  +     +I     L  L AL  L ++   + ++   +  L +L  L
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYL 314

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L  N +  +   ++ L+ L+RL   +N +  +  + N
Sbjct: 315 TLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLAN 351

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           S++     LT+L  ++    ++     + NLK L  L +    I ++   +  L+ L+ L
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
              NN +  +   L  L+++  L    N +  L  + N
Sbjct: 337 FFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           S +    SLT L+ +   N K+     L NL  +  L      I ++   L  L+ +  L
Sbjct: 322 SDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQL 380

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149
            L +      P +     S+   V +     I P  +
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 59  FKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117
              LT+L+ +     ++     L +L  L  L +    I  +   L  L+ L  L L  N
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275

Query: 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            +  +   L  L++L  L L++N L+ +  I N
Sbjct: 276 QISNIS-PLAGLTALTNLELNENQLEDISPISN 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKIL-PYELGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           S +    +LT++  +   + +I     L NL  +  L ++       P +     S+   
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148
           V    G    P +++   S     ++ N      ++
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEV 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 59  FKSLTSLEIIDCQNFKIL-PYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117
             +L            +       +L  + TL  D   I+   + +  L++L  +  +NN
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNN 78

Query: 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L  +   L  L+ L  +++++N +  +  + N
Sbjct: 79  QLTDITP-LKNLTKLVDILMNNNQIADITPLAN 110

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILV 113
           S L     + SL +    N   L   L N+  L  L V  + +++V   +  L+ L  L 
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183

Query: 114 LTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           L  N ++ +   L  L+SL       N +  +  + N
Sbjct: 184 LNYNQIEDI-SPLASLTSLHYFTAYVNQITDITPVAN 219

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 59  FKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117
             +L  L  +     KI     L NL  L  L ++   I ++   L  L+ +  L L  N
Sbjct: 84  LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGAN 142

Query: 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
                   L+ ++ L  L ++++ +K +  I N
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           + L    +L+ L  ++    +I     + +L  L+ L V    I ++   L  LS L  L
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL 292

Query: 113 VLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKILN 150
            L NN L     E +  L++L  L LS N +  +  + +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKIL-PYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKI 111
           S +   K LT L++++  + +I     L NL  L +L ++   +  E  E +G L++L  
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 112 LVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143
           L L+ N +  +   L  LS +     ++  +K
Sbjct: 316 LFLSQNHITDIRP-LASLSKMDSADFANQVIK 346

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNL----KALETLIVDGTLIRE-VPES 102
            L++      M K+++SLE +D     +  +         +++  L +   ++   V   
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 103 LGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           L     +K+L L NN +  +P+ +  L +L+ L ++ N LK +P 
Sbjct: 448 LPP--KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLIREVP-ESL 103
           +L  L +       LT+L  +   +  +  +  E    +  L  L +    +  +     
Sbjct: 50  NLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146
             L +L++L+L NN +  +   +   ++ L++L LS N +   P
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 40  KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYE-LGNLKALETLIVDGTLI 96
            L+L     L  + S    F  + +L  +D  +  +  L      +L+ALE L++    I
Sbjct: 68  SLLLSHN-HLNFISSE--AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124

Query: 97  REVPE-SLGQLSSLKILVLTNNGLKRLPE----SLNQLSSLKRLVLSDNPLKILPK 147
             V   +   ++ L+ L L+ N + R P       N+L  L  L LS N LK LP 
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 47  LSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELGNLKALETLIVDGTLIREVPE-SLG 104
             L ++P SL        L++      ++   +    L  L +L++    +  +   +  
Sbjct: 28  QQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85

Query: 105 QLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILP 146
            + +L+ L L++N L  L     + L +L+ L+L +N + ++ 
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
               L ++  +FK L  L  I+  N KI   E G       +  +++    +  V   + 
Sbjct: 43  EFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
             L SLK L+L +N +  +   S   LSS++ L L DN +  +  
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYEL-GNLKALETLIVDGTLIREVPE-SLG 104
           +  +      F+  + +  I   + ++  + +++   L++L+TL++    I  V   S  
Sbjct: 69  ITDIEEGA--FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
            LSS+++L L +N +  +   + + L SL  L L  NP 
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 87  ETLIVDGTLIREVPES--LGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143
             L ++      +  +    +L  L+ +  +NN +  + E +    S +  ++L+ N L+
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 144 ILP 146
            + 
Sbjct: 95  NVQ 97

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
           +++ +P     F     L  ID  N +I          L++L +L++ G  I E+P+SL 
Sbjct: 43  TIKVIPPGA--FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147
             L SL++L+L  N +  L   +   L +L  L L DN L+ + K
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQL 106
            L  +P++L   +++T + +       I P      K L  + +    I E+   +   L
Sbjct: 22  GLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

Query: 107 SSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
            SL  LVL  N +  LP+SL   L SL+ L+L+ N +  L  
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKI--LPYEL-GNLKALETLIVDGTLIREVPESLG 104
            +  L      F+ L SL  +     KI  LP  L   L +L+ L+++   I  +     
Sbjct: 67  QISELAPDA--FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124

Query: 105 Q-LSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
           Q L +L +L L +N L+ + + + + L +++ + L+ NP 
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 40  KLVLEKCLSLQSL------PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG 93
           ++ +     L  L        +       T L  +DC   KI   ++   K L  L  D 
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT 200

Query: 94  TLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
             I ++   L Q   L  L  ++N L  +   +  L+ L     S NPL  L 
Sbjct: 201 NNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
               T L ++DCQ   I   +L     L  L ++ T + E+   +   + LK L   N  
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350

Query: 119 LKRLPESLNQLSSLKRLVLSDNPLKILPK 147
           ++     + ++ +L     ++     +PK
Sbjct: 351 IQDFSS-VGKIPALNNNFEAEGQTITMPK 378

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 59  FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
               T+L  + C + K+   ++  L  L  L  D   + ++  S  Q   L  L    N 
Sbjct: 81  LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS--QNPLLTYLNCARNT 138

Query: 119 LKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           L  +   ++  + L  L    N       +  
Sbjct: 139 LTEID--VSHNTQLTELDCHLNKKITKLDVTP 168

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 55  SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
            L     L   +   C+  K L  ++ +   L  L      I E+   L Q   L  L L
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYL 325

Query: 115 TNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            N  L  L   ++  + LK L   +  ++    +  
Sbjct: 326 NNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGK 359

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
            ++     L S++ +D  + +I     L  L  L+ L +D   I  +   L  L++L+ L
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYL 156

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            + N  +  L   L  LS L  L   DN +  +  + +
Sbjct: 157 SIGNAQVSDL-TPLANLSKLTTLKADDNKISDISPLAS 193

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           + +     L++L+++     +I     L  L  L+ L +    + ++   L  LS L  L
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTL 178

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
              +N +  +   L  L +L  + L +N +  +  + N
Sbjct: 179 KADDNKISDIS-PLASLPNLIEVHLKNNQISDVSPLAN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
            LQ+L + +  F  LT L  +   N ++    LG   +L  L+ L + G  ++ +P  + 
Sbjct: 70  QLQTLSAGV--FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
            +L+ LK L L  N L+ +P    ++L++L+ L LS N L+ +P 
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL-G 104
           L SLP  +  F  LT L+ +     ++     G    L  L+ L ++   ++ +P     
Sbjct: 95  LASLPLGV--FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 105 QLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP 141
           +L++L+ L L+ N L+ +P  + ++L  L+ + L  N 
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQL 106
               +P  L  +K LT +++ + +   +      N+  L TLI+    +R +P      L
Sbjct: 42  QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101

Query: 107 SSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
            SL++L L  N +  +PE + N LS+L  L +  NPL
Sbjct: 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 87  ETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKIL 145
             L +DG     VP+ L     L ++ L+NN +  L     + ++ L  L+LS N L+ +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 146 PK 147
           P 
Sbjct: 94  PP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 73  FKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLPESL-NQLS 130
           F ++P EL N K L  + +    I  +       ++ L  L+L+ N L+ +P    + L 
Sbjct: 43  FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102

Query: 131 SLKRLVLSDNPLKILPK 147
           SL+ L L  N + ++P+
Sbjct: 103 SLRLLSLHGNDISVVPE 119

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
            +  L     +F SL +L+ +   + ++    +G   +L  L  L +    +  +P ++ 
Sbjct: 51  QITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108

Query: 104 GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147
            +L  LK L +  N L  LP  + +L+ L  L L  N LK +P 
Sbjct: 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 49  LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESLGQ 105
           L +LP  +  F SLT L ++D    ++          L  L+ L +    + E+P  + +
Sbjct: 76  LGALPVGV--FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER 133

Query: 106 LSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP 141
           L+ L  L L  N LK +P  + ++LSSL    L  NP
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
           + +    +L +L  +     K+     L +LK L++L ++   I ++   L  L  L+ L
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 139

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L NN +  +   L++L+ L  L L DN +  +  +  
Sbjct: 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG 176

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
            LQSLP+ +  F  LT+L+ +     ++     G    L  L  L +    ++ +P+ + 
Sbjct: 96  QLQSLPNGV--FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
            +L++L  L L+ N L+ LPE + ++L+ LK L L  N LK +P 
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 12/149 (8%)

Query: 3   KSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSL 62
              Q     +         +   ++   +    L S   ++     ++S+       + L
Sbjct: 8   PIKQIFP-DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG----IQYL 62

Query: 63  TSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNG 118
            ++  +     K+  +++     L  L  LI+ G  ++ +P  +  +L++LK LVL  N 
Sbjct: 63  PNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120

Query: 119 LKRLPESL-NQLSSLKRLVLSDNPLKILP 146
           L+ LP+ + ++L++L  L L+ N L+ LP
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILV 113
           S L   K LT LE +     ++          L  L +D   +R+  +SL  L +L+IL 
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 114 LTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           + NN LK +   L  LS L+ L L  N +     +  
Sbjct: 135 IRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTR 170

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQLSSLKIL 112
            SL   +  T+L+ +   + +I     L +L  LE L V+   ++ +  +    + L  L
Sbjct: 54  QSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRL 111

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L NN L+   +SL  L +L+ L + +N LK +  +  
Sbjct: 112 FLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGF 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 54  SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKIL 112
           + +    +L  L I+           L  L +L  L +  +   +     +  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 113 VLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
            L+ NG       L  L  LK L +  + +     I +
Sbjct: 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIED 179

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
            L  + S   +F  L  L  ++ +  ++   E         ++ L +    I+E+   + 
Sbjct: 40  ELGRISSD-GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98

Query: 104 GQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
             L  LK L L +N +  +   S   L+SL  L L+ NP 
Sbjct: 99  LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 2   LKSLQSIEISNCSILKRFLEIPSCNIDGGI--GIERLASCKLVLEKCLSLQSLPSSLCMF 59
              L+ IEIS   +L+         I+  +   + +L   ++ +EK  +L  +      F
Sbjct: 53  FGDLEKIEISQNDVLEV--------IEADVFSNLPKLH--EIRIEKANNLLYINPE--AF 100

Query: 60  KSLTSLEIIDCQN---FKILPYELGNLKALETL-IVDGTLIREVPESL--GQLSSLKILV 113
           ++L +L+ +   N     +      +      L I D   I  +  +   G      IL 
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 114 LTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILP 146
           L  NG++ +  S  N     +  +  +N L+ LP
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 58  MFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQ-LSSLKILVLT 115
           +     +LE +   N  ++    L  L  L+ L +    I    + L + L +L  L L+
Sbjct: 44  LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 116 NNGLKRLPE--SLNQLSSLKRLVLSDNPLKILP 146
            N LK +     L +L  LK L L +  +  L 
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 47/164 (28%)

Query: 8   IEISNCS-------ILKRFLEIPSCN----IDGGIGIE-RLASCKLVLEKCLSLQSLPSS 55
           + + NC+       +L++ L     N     D    I+ R+ S +  L + L  +   + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 56  LCMFKSLTSLEII--DCQNFKILPYELGNLKALE----TLIVDGTLIREVPESLGQLSSL 109
           L          ++  + QN K          A       L+   T  ++V + L   ++ 
Sbjct: 247 L----------LVLLNVQNAKAW-------NAFNLSCKILLT--TRFKQVTDFLSAATTT 287

Query: 110 KI-LVLTNNGLKRLPESLNQLS--------SLKRLVLSDNPLKI 144
            I L   +  L    E  + L          L R VL+ NP ++
Sbjct: 288 HISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 58  MFKSLTSLEIIDCQNFKILPYE-LGNLKALETLIVDGTLIREVPESLGQ-LSSLKILVLT 115
           +      LE +   N  +     L  L  L+ L +    +    E L +   +L  L L+
Sbjct: 37  LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 116 NNGLKRLPE--SLNQLSSLKRLVLSDNPLKILP 146
            N +K L     L +L +LK L L +  +  L 
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG---NLKALETLIVDGTLIREVPESL- 103
           SL+SLP+   +F  LTSL  +     K+     G    L +L  L +    ++ +P  + 
Sbjct: 39  SLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96

Query: 104 GQLSSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
            +L+ LK L L  N L+ LP+ + ++L+ LK L L  N LK +P 
Sbjct: 97  DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 48  SLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQL 106
              S+P+ +      T L++       +       L +L  L + G  ++ +P  +  +L
Sbjct: 18  GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 107 SSLKILVLTNNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
           +SL  L L+ N L+ LP  + ++L+ LK L L+ N L+ LP 
Sbjct: 76  TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.01
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.55

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=9.3e-22  Score=138.84  Aligned_cols=144  Identities=24%  Similarity=0.311  Sum_probs=83.6

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccC---------
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCM---------   58 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~---------   58 (150)
                      +++|++|+|++|.+. .+|..+..      +++++|.++.+|.        ++|++++|+..+.+|..+..         
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            456677777776655 55654433      6666666666654        66667766666666654433         


Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEc
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVL  137 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l  137 (150)
                      +++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|+.+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            666666666665555 44555556666666666666666555555555666666666655444 5555555555555555


Q ss_pred             cCCCCC-CCCC
Q 047447          138 SDNPLK-ILPK  147 (150)
Q Consensus       138 ~~n~l~-~~p~  147 (150)
                      ++|.+. .+|.
T Consensus       261 ~~n~~~~~~p~  271 (328)
T 4fcg_A          261 KDCSNLLTLPL  271 (328)
T ss_dssp             TTCTTCCBCCT
T ss_pred             CCCCchhhcch
Confidence            554433 4443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=5.3e-21  Score=134.99  Aligned_cols=146  Identities=25%  Similarity=0.352  Sum_probs=129.1

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      .+.+++|+|++|.+. .+|..+..      +++++|.++.+|.        ++|++++|.+. .+|..+..+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            468999999998865 77876554      8899999988876        88999997665 88999999999999999


Q ss_pred             ecCcccCCCchhhcC---------cCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEcc
Q 047447           68 IDCQNFKILPYELGN---------LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLS  138 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~---------l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~  138 (150)
                      ++|+..+.+|..+..         +++|+.|++++|.++.+|..++.+++|++|++++|.++++|..+..+++|++|+++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            999999988876654         99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCCCCC
Q 047447          139 DNPLK-ILPKIL  149 (150)
Q Consensus       139 ~n~l~-~~p~~~  149 (150)
                      +|.+. .+|..+
T Consensus       238 ~n~~~~~~p~~~  249 (328)
T 4fcg_A          238 GCTALRNYPPIF  249 (328)
T ss_dssp             TCTTCCBCCCCT
T ss_pred             CCcchhhhHHHh
Confidence            98776 777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=5.8e-20  Score=127.69  Aligned_cols=145  Identities=26%  Similarity=0.274  Sum_probs=103.9

Q ss_pred             CCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      .+++|++++|.+.+..|..+..      +++++|.++.++.       ++|++++|. .+.+|..+..+++|++|++++|
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC
Confidence            4555555555544332222221      5555555554443       667777754 4466777778888888888888


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      .+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.+|.. +..+++|++|++++|+++.+|..
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            8887777778888888888888888887766 457788888888888888887765 57788888899988888888875


Q ss_pred             C
Q 047447          149 L  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       191 ~  191 (290)
T 1p9a_G          191 F  191 (290)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1.9e-20  Score=144.86  Aligned_cols=89  Identities=28%  Similarity=0.431  Sum_probs=64.9

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEE
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLV  136 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~  136 (150)
                      +++++.|++++|.+.+.+|..++.++.|+.|++++|.++ .+|..++.+++|+.|++++|++++ +|..+..+++|++++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            455667777777777777777777777777777777776 667777777777777777777776 777777777777777


Q ss_pred             ccCCCCC-CCCC
Q 047447          137 LSDNPLK-ILPK  147 (150)
Q Consensus       137 l~~n~l~-~~p~  147 (150)
                      +++|+++ .+|.
T Consensus       711 ls~N~l~g~iP~  722 (768)
T 3rgz_A          711 LSNNNLSGPIPE  722 (768)
T ss_dssp             CCSSEEEEECCS
T ss_pred             CcCCcccccCCC
Confidence            7777776 6664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=3e-20  Score=143.73  Aligned_cols=66  Identities=26%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             CcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC-CCCCCC
Q 047447           84 KALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK-ILPKIL  149 (150)
Q Consensus        84 ~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~-~~p~~~  149 (150)
                      ++++.+++++|.++ .+|..++.+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence            45666777777666 566677777777888888887776 7777777888888888888777 676554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=1.8e-19  Score=124.62  Aligned_cols=145  Identities=21%  Similarity=0.235  Sum_probs=80.0

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcC-cccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIG-IERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL   65 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~-l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L   65 (150)
                      +++|++|++++|.+.+..|..+..      +++++|. ++.++.         ++|++++|.+.+..+..+..+++|++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            445555555555444332332221      5555554 444321         555566655444444555556666666


Q ss_pred             EeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447           66 EIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ++++|.+.+..+..+..+++|+.+++++|.++.++. .+..+++|+++++++|.+++ .|..+..+++|+.|++++|.+.
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            666665555544555566666666666666665544 35556666666666666665 3555666666666666666666


Q ss_pred             CCC
Q 047447          144 ILP  146 (150)
Q Consensus       144 ~~p  146 (150)
                      .+|
T Consensus       215 ~~~  217 (285)
T 1ozn_A          215 ALP  217 (285)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=1.9e-20  Score=131.28  Aligned_cols=146  Identities=21%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCC-CccEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFK-SLTSL   65 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~-~L~~L   65 (150)
                      +++|++|++++|.+.+.+|..+..      +++++|.++ .+|.        ++|++++|.+.+.+|..+..++ +|++|
T Consensus       100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence            566677777766666555554432      566666655 3332        5566666555445555555555 55555


Q ss_pred             EeecCcccC-----------------------CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcc-
Q 047447           66 EIIDCQNFK-----------------------ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKR-  121 (150)
Q Consensus        66 ~l~~~~~~~-----------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~-  121 (150)
                      ++++|.+.+                       ..|..+..+++|+.+++++|.++..++.+..+++|+++++++|.+++ 
T Consensus       180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  259 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred             ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc
Confidence            555555544                       44444555556666666666555444445566667777777777664 


Q ss_pred             cCccccCCCCCCEEEccCCCCC-CCCC
Q 047447          122 LPESLNQLSSLKRLVLSDNPLK-ILPK  147 (150)
Q Consensus       122 lp~~~~~~~~L~~l~l~~n~l~-~~p~  147 (150)
                      +|..+..+++|++|++++|++. .+|.
T Consensus       260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             CChHHhcCcCCCEEECcCCcccccCCC
Confidence            6666777777777777777766 5554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=3.7e-19  Score=121.09  Aligned_cols=105  Identities=19%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            445555544333333344455555555555555544444444455555555555555554443 3445555555555555


Q ss_pred             cCcccCc-cccCCCCCCEEEccCCCCC
Q 047447          118 GLKRLPE-SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       118 ~i~~lp~-~~~~~~~L~~l~l~~n~l~  143 (150)
                      .++.++. .+..+++|+.+++++|++.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            5555332 3445555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=6.3e-19  Score=121.12  Aligned_cols=144  Identities=22%  Similarity=0.244  Sum_probs=79.2

Q ss_pred             CCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      .|++|++++|.+.+..+..+..      +++++|.++.++.         ++|++++|.+....+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            4566666665543322212211      5555555554443         555666654433333444556666666666


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.++. .+..+++|++|++++|.++.+|
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            666555555555566666666666666665554 34556666666666666666443 3555666666666666666555


Q ss_pred             C
Q 047447          147 K  147 (150)
Q Consensus       147 ~  147 (150)
                      .
T Consensus       198 ~  198 (270)
T 2o6q_A          198 E  198 (270)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=2.8e-20  Score=130.45  Aligned_cols=141  Identities=13%  Similarity=0.188  Sum_probs=105.0

Q ss_pred             CCCCCcEEeccc-CCCccccccCCcc------ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCCCccE
Q 047447            1 MLKSLQSIEISN-CSILKRFLEIPSC------NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         1 ~l~~L~~L~l~~-~~~~~~~p~~~~~------l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~   64 (150)
                      +++.|++|++++ |.+.+.+|..+..      +++++|.++ .+|.        ++|++++|.+.+..|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            378999999994 8888888876654      888888887 4554        88999999888899999999999999


Q ss_pred             EEeecCcccCCCchhhcCcC-cCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCC
Q 047447           65 LEIIDCQNFKILPYELGNLK-ALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNP  141 (150)
Q Consensus        65 L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~  141 (150)
                      |++++|.+.+.+|..+..++ .|+.+++++|.+. .+|..+..+. |+.+++++|.+++ .|..+..+++|+.|++++|.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            99999999988998888887 8999999998876 4555555444 5666666555554 33334444444444444443


Q ss_pred             C
Q 047447          142 L  142 (150)
Q Consensus       142 l  142 (150)
                      +
T Consensus       233 l  233 (313)
T 1ogq_A          233 L  233 (313)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=5e-19  Score=122.96  Aligned_cols=142  Identities=18%  Similarity=0.130  Sum_probs=122.6

Q ss_pred             CCCCCcEEecccCCCccccccC-----CccccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            1 MLKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      .+++|++|++++|.+.+ ++..     +..+++++|.++.+|.        ++|++++|.+.+..+..|..+++|++|++
T Consensus        53 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             TCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             cCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            36899999999988664 3432     2228999999988776        88999998766655677899999999999


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ++|.+.+..+..|..+++|+.|++++|.++.+|+. +..+++|+.+++++|.++.+|..+...++|+.+++++|++.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99999988777888999999999999999998874 57899999999999999999999988899999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=6.7e-19  Score=119.83  Aligned_cols=143  Identities=20%  Similarity=0.264  Sum_probs=120.6

Q ss_pred             CCcEEecccCCCccccccCCc----cccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            4 SLQSIEISNCSILKRFLEIPS----CNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~----~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      ..++++++++.+ ..+|..+.    .+++++|.++.++.         ++|++++|.+.+..+..+..+++|++|++++|
T Consensus        15 ~~~~l~~~~~~l-~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSL-DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCC-SSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCc-cccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            467888888654 35555443    38888888876654         88999998777777777889999999999999


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCCCCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .+.+..+..|..+++|+.|++++|.++.+++. +..+++|++|++++|.++.++. .+..+++|++|++++|.++.+|.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99988888889999999999999999988764 5889999999999999999776 58899999999999999997775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=1e-18  Score=120.13  Aligned_cols=142  Identities=24%  Similarity=0.273  Sum_probs=121.1

Q ss_pred             CCCCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccE
Q 047447            1 MLKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~   64 (150)
                      ++++|++|++++|.+. .+|...+.       +++++|.++.++.         ++|++++|.+....+..+..+++|++
T Consensus        59 ~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             SCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence            3689999999998765 45554322       8899999887764         88999998776666677889999999


Q ss_pred             EEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447           65 LEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL  142 (150)
Q Consensus        65 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l  142 (150)
                      |++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|.. +..+++|+.+++++|++
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            9999999888777778999999999999999998876 578899999999999999997764 78899999999999997


Q ss_pred             C
Q 047447          143 K  143 (150)
Q Consensus       143 ~  143 (150)
                      .
T Consensus       218 ~  218 (270)
T 2o6q_A          218 D  218 (270)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=9.6e-19  Score=120.39  Aligned_cols=141  Identities=23%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      +++|++|++++|.+.+ ++..     +..+++++|.++.++.         ++|++++|.+.+..+..+..+++|++|++
T Consensus        62 l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            4566666666665443 2211     1115556665554443         55666665544444444556666666666


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~  143 (150)
                      ++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.+++++. .+..+++|+.+++++|++.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            6666665555555666666666666666665544 34566666666666666666433 3566666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.8e-19  Score=118.58  Aligned_cols=138  Identities=16%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      ++.|++|++++|.+. .+|. +..      +++++|.++.++.       ++|++++|.+....+..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~i~-~l~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCTT-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCcc-ChHH-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            467899999998765 4552 222      6677776665544       788888877766677778888889999999


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCC-CCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTL-IREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +|.+.+..+..+..+++|+.|++++|. ++.++ .+..+++|+++++++|.+++++ .+..+++|+++++++|++.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            888888777788888889999998887 77776 5778888999999988888876 6788888999999888875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=3.8e-19  Score=124.56  Aligned_cols=148  Identities=20%  Similarity=0.163  Sum_probs=119.5

Q ss_pred             CCCCcEEecccCCCccccccCC--cc------ccCCCcCccccc------------c-cceecccccCCCcCcccccCCC
Q 047447            2 LKSLQSIEISNCSILKRFLEIP--SC------NIDGGIGIERLA------------S-CKLVLEKCLSLQSLPSSLCMFK   60 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~--~~------l~l~~~~l~~l~------------~-~~L~l~~~~~~~~~~~~~~~l~   60 (150)
                      +++|++|++++|.+.+.+|..+  ..      +++++|.++.+|            . ++|++++|.+.+..+..+..++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            6899999999999888888765  22      888999888653            3 7899999887777668899999


Q ss_pred             CccEEEeecCcccCC--Cchhh--cCcCcCceEEecCCCCCcc---chh-hcCCCCCCEEEccCCcCcccC--ccccCCC
Q 047447           61 SLTSLEIIDCQNFKI--LPYEL--GNLKALETLIVDGTLIREV---PES-LGQLSSLKILVLTNNGLKRLP--ESLNQLS  130 (150)
Q Consensus        61 ~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~l~l~~n~l~~l---~~~-~~~~~~L~~l~l~~n~i~~lp--~~~~~~~  130 (150)
                      +|++|++++|.+.+.  .+..+  ..+++|+.|++++|.++.+   +.. +..+++|+++++++|.+++.+  ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999987765  33344  7889999999999999844   333 357889999999999998843  3466678


Q ss_pred             CCCEEEccCCCCCCCCCCC
Q 047447          131 SLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       131 ~L~~l~l~~n~l~~~p~~~  149 (150)
                      +|++|++++|.++.+|..+
T Consensus       254 ~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             TCCEEECTTSCCSSCCSSC
T ss_pred             CCCEEECCCCccChhhhhc
Confidence            9999999999999888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=116.23  Aligned_cols=137  Identities=19%  Similarity=0.206  Sum_probs=113.9

Q ss_pred             cEEecccCCCccccccCCcc----ccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447            6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ   71 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   71 (150)
                      +.++++++.+ +.+|..+..    +++++|.++.++.          ++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        14 ~~l~~s~n~l-~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCC-SSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCc-ccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            5788888764 456665433    8888888887632          789999977666666678899999999999999


Q ss_pred             ccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCC
Q 047447           72 NFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +.+..+..|..+++|+.|++++|.++.+ |..+..+++|+++++++|.++.+ |..+..+++|+.+++++|++.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9888888899999999999999999977 45778899999999999999995 777899999999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=1.5e-18  Score=111.43  Aligned_cols=135  Identities=21%  Similarity=0.243  Sum_probs=113.5

Q ss_pred             CCCCcEEecccCCCc-cccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh
Q 047447            2 LKSLQSIEISNCSIL-KRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE   79 (150)
Q Consensus         2 l~~L~~L~l~~~~~~-~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   79 (150)
                      .+.|++|++++|.+. +.+|..+.          .++. ++|++++|.+...  ..+..+++|++|++++|.+.+.+|..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA----------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG----------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred             cccCCEEECCCCCCChhhHHHHHH----------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH
Confidence            367899999988865 45655422          2233 6899999875444  67889999999999999999888888


Q ss_pred             hcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCc----cccCCCCCCEEEccCCCCCCCCCC
Q 047447           80 LGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPE----SLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        80 ~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~----~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      +..+++|+.|++++|.++.++  ..+..+++|+++++++|.++++|.    .+..+++|+++++++|.+..+|.+
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            888999999999999999876  678899999999999999999876    688999999999999999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=2.7e-18  Score=118.72  Aligned_cols=147  Identities=22%  Similarity=0.301  Sum_probs=116.2

Q ss_pred             CCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcC-cccccCCCCccEEE
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSL-PSSLCMFKSLTSLE   66 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~-~~~~~~l~~L~~L~   66 (150)
                      +.|++|++++|.+.+..+..+..      +++++|.++.++.         ++|++++|...+.+ +..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            57899999998766543333322      8888888876632         88899997644444 67788899999999


Q ss_pred             eecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCC
Q 047447           67 IIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~  144 (150)
                      +++|.+.+..+..+..+++|+.+++++|.++.++. .+..+++|+++++++|.++.++. .+..+++|+.+++++|.+..
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            99998888878888889999999999999987765 47889999999999999998665 48889999999999999884


Q ss_pred             C-CCCC
Q 047447          145 L-PKIL  149 (150)
Q Consensus       145 ~-p~~~  149 (150)
                      + |..+
T Consensus       192 ~~~~~~  197 (285)
T 1ozn_A          192 VHPHAF  197 (285)
T ss_dssp             ECTTTT
T ss_pred             cCHhHc
Confidence            4 5443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=2.7e-18  Score=118.17  Aligned_cols=146  Identities=23%  Similarity=0.276  Sum_probs=121.9

Q ss_pred             CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      +++|+.|++++|.+. .++.     .+..+++++|.++.++.       ++|++++|.+.+..+..+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             HTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             ccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            578999999998754 3332     22228899999887665       8899999877666666678999999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+.+++++|.+++++.. +..+++|++|++++|.+..+|.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99998888788999999999999999998876 468999999999999999996654 6889999999999999997765


Q ss_pred             C
Q 047447          148 I  148 (150)
Q Consensus       148 ~  148 (150)
                      .
T Consensus       199 ~  199 (272)
T 3rfs_A          199 G  199 (272)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=3.3e-19  Score=131.76  Aligned_cols=110  Identities=18%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc-CcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG-NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++.++.. ..+++|+.|++++|
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN  201 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCC
Confidence            5666777666555566677788888888888887777666665 677788888888877766433 35777888888888


Q ss_pred             cCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447          118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      .++++|..+..+++|+.|++++|.+..+|..+
T Consensus       202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             CCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CCCCCCHhHcCCCCccEEEecCCcCcccchhh
Confidence            88887777777888888888888887777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3.8e-18  Score=114.76  Aligned_cols=137  Identities=20%  Similarity=0.183  Sum_probs=99.4

Q ss_pred             cEEecccCCCccccccCCcc----ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447            6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN   72 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   72 (150)
                      +.++++++. .+.+|.....    +++++|.++.++.         ++|++++|.+....+..+..+++|++|++++|.+
T Consensus        22 ~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            345555543 3344443322    5666666555422         6788888765433335567888888888888888


Q ss_pred             cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447           73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~  143 (150)
                      .+..+..|..+++|+.|++++|.++.+|..+..+++|+++++++|.++.++. .+..+++|+.+++++|++.
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8776777788888888888888888888888888888888888888888664 4778888888888888876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=5.2e-18  Score=119.46  Aligned_cols=70  Identities=26%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             hhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           78 YELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        78 ~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|..+..+++|+++++++|+++.+|.
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence            344455555555555555554433 4455555555555555555555555555556666666665555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=4.5e-19  Score=124.44  Aligned_cols=110  Identities=18%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhh-cCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL-GNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++.++.. ..+++|+++++++|
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN  201 (317)
T ss_dssp             EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC
Confidence            555666655544444556667777777777777766655544 3566777777777776655432 24667777777777


Q ss_pred             cCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447          118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      .++++|..+..+++|+.+++++|.++.+|..+
T Consensus       202 ~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             cCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence            77776666777777777777777777666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.9e-18  Score=114.72  Aligned_cols=122  Identities=21%  Similarity=0.209  Sum_probs=111.1

Q ss_pred             ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447           26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV   99 (150)
Q Consensus        26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l   99 (150)
                      ++++++.++.+|.      ++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|+.|++++|.++.+
T Consensus        24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            7888889998887      8899999888777788899999999999999998777667789999999999999999988


Q ss_pred             ch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447          100 PE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       100 ~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|.
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH
Confidence            76 4689999999999999999999999999999999999999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=2.8e-18  Score=127.32  Aligned_cols=140  Identities=20%  Similarity=0.238  Sum_probs=98.6

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-----------cceecccccCCCcCccc-ccCCCCcc
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-----------CKLVLEKCLSLQSLPSS-LCMFKSLT   63 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-----------~~L~l~~~~~~~~~~~~-~~~l~~L~   63 (150)
                      ++.|++|++++|.+.+..|..+..      +++++|.++.++.           ++|++++|.+.+.+|.. +..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            567777888877776655654433      6777777764321           67777776665546543 56677777


Q ss_pred             EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447           64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL  142 (150)
Q Consensus        64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l  142 (150)
                      +|++++|.+.+..|..+.  ++|+.|++++|.++.+|..+..+++|+++++++|.++.+|.. +..+++|+++++++|++
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            777777777766655432  577888888887777777666777888888888888777765 67777888888888876


Q ss_pred             C
Q 047447          143 K  143 (150)
Q Consensus       143 ~  143 (150)
                      .
T Consensus       481 ~  481 (520)
T 2z7x_B          481 D  481 (520)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4.4e-18  Score=113.80  Aligned_cols=137  Identities=16%  Similarity=0.219  Sum_probs=102.5

Q ss_pred             cEEecccCCCccccccCC----ccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447            6 QSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN   72 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   72 (150)
                      +.++++++. ++.+|..+    ..+++++|.++.++.         ++|++++|.+....|..|..+++|++|++++|.+
T Consensus        14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            456666654 33445433    237777777766553         7788888777666677888888888888888888


Q ss_pred             cCCCchhhcCcCcCceEEecCCCCCccc-hhhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447           73 FKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~  143 (150)
                      ....+..|..+++|+.|++++|.++.++ ..+..+++|+++++++|.++.++. .+..+++|+.+++++|++.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            8766666788888888888888888664 467788888888888888888654 4777888888888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1.5e-18  Score=121.10  Aligned_cols=105  Identities=22%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccC-CCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ +..+..+++|+.+++++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            445555544444444445555556666665555544 3444555566666666666666544 33455566666666666


Q ss_pred             CcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447          117 NGLKRLPE-SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       117 n~i~~lp~-~~~~~~~L~~l~l~~n~l~  143 (150)
                      |.+++++. .+..+++|+++++++|.+.
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CccCccChhhccCcccCCEeECCCCCCc
Confidence            66665433 3555666666666666665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.78  E-value=3.5e-18  Score=129.90  Aligned_cols=145  Identities=17%  Similarity=0.096  Sum_probs=107.5

Q ss_pred             CCCcEEecccCCCccccccCCc-------c------ccCCCcCcccccc---------cceecccccCCCcCcccccC-C
Q 047447            3 KSLQSIEISNCSILKRFLEIPS-------C------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCM-F   59 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~-------~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~-l   59 (150)
                      ++|++|++++|.+.+..|..+.       .      +++++|.++.+|.         ++|++++|.+. .+|..+.. .
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            4677788887777766665444       1      7778888777665         67888886655 55544322 2


Q ss_pred             -------CCccEEEeecCcccCCCchhhc--CcCcCceEEecCCCCCccchhhcCCCCCCEEEcc------CCcCcc-cC
Q 047447           60 -------KSLTSLEIIDCQNFKILPYELG--NLKALETLIVDGTLIREVPESLGQLSSLKILVLT------NNGLKR-LP  123 (150)
Q Consensus        60 -------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~------~n~i~~-lp  123 (150)
                             ++|++|++++|.+. .+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|+++      +|.+.+ +|
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                   27888888888777 5666665  7888888888888888888888888888888884      455555 78


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCCC
Q 047447          124 ESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       124 ~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      ..+..+++|+.|++++|.+..+|..+
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~  585 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDIRKVNEKI  585 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred             HHHhcCCCCCEEECCCCcCCccCHhH
Confidence            88888888888888888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=3e-19  Score=139.38  Aligned_cols=9  Identities=22%  Similarity=0.475  Sum_probs=4.7

Q ss_pred             CCCCcEEec
Q 047447            2 LKSLQSIEI   10 (150)
Q Consensus         2 l~~L~~L~l   10 (150)
                      ++.|++|+|
T Consensus       346 L~~L~~LdL  354 (876)
T 4ecn_A          346 LTELKVLSF  354 (876)
T ss_dssp             CTTCCEEES
T ss_pred             cccceEeee
Confidence            445555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=2e-18  Score=126.09  Aligned_cols=108  Identities=27%  Similarity=0.293  Sum_probs=73.6

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+++++++|
T Consensus       302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence            6677777665555566666777777777777776666666667777777777777777655 446667777777777777


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCC-CCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLK-ILP  146 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~-~~p  146 (150)
                      .++++|.. +..+++|+++++++|++. ..|
T Consensus       382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            77775543 566777777777777766 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=8.2e-19  Score=132.24  Aligned_cols=110  Identities=20%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..+..+++|+.|++++|.++.+ |..+..+++|+.+++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            5556666555555555556666666666666665552 455556666666666666666544 33456666666666666


Q ss_pred             CcCcc-cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447          117 NGLKR-LPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       117 n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      |.+++ .|..+..+++|+.|++++|+++.+|..
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            66666 355566666666666666666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=7.7e-18  Score=118.75  Aligned_cols=86  Identities=28%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             ccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447           62 LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        62 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n  140 (150)
                      |++|++++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|..+..+++|+.+++++|
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence            3334444444444444556666777777777777776554 567777788888888887777777777788888888888


Q ss_pred             CCCCCCC
Q 047447          141 PLKILPK  147 (150)
Q Consensus       141 ~l~~~p~  147 (150)
                      .++.+|.
T Consensus       275 ~l~~~~~  281 (332)
T 2ft3_A          275 NITKVGV  281 (332)
T ss_dssp             CCCBCCT
T ss_pred             CCCccCh
Confidence            7776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=9.7e-19  Score=121.98  Aligned_cols=122  Identities=25%  Similarity=0.276  Sum_probs=88.7

Q ss_pred             ccCCCcCcccccc--------cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447           26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI   96 (150)
Q Consensus        26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l   96 (150)
                      +++++|.++.+|.        ++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+
T Consensus        83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            5555555554443        666777755443332 4566777888888888777777777777888888888888877


Q ss_pred             Cc--cchhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCC
Q 047447           97 RE--VPESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        97 ~~--l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ..  +|..+..+++|+++++++|.++++ |..+..+++|++|++++|.+..++.
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence            64  566777888888888888888884 6678888888888888888876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=3.6e-18  Score=117.57  Aligned_cols=59  Identities=24%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCCCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      ++|++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.+++++|.++
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            4444444433333233344455555555555544442 3444555555555555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=6.4e-19  Score=133.90  Aligned_cols=146  Identities=23%  Similarity=0.250  Sum_probs=117.8

Q ss_pred             CCCCCcEEecccCCCccccccCCcc------ccCCCcC-ccc--cc-------------c-cceecccccCCCcCcc--c
Q 047447            1 MLKSLQSIEISNCSILKRFLEIPSC------NIDGGIG-IER--LA-------------S-CKLVLEKCLSLQSLPS--S   55 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~-l~~--l~-------------~-~~L~l~~~~~~~~~~~--~   55 (150)
                      ++++|++|++++|.+.+.+|..+..      +++++|. ++.  +|             . ++|++++|.+. .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            3688999999999999999987665      8888887 664  44             2 78899997766 8888  8


Q ss_pred             ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCC-CCEEEccCCcCcccCccccCCC--CC
Q 047447           56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS-LKILVLTNNGLKRLPESLNQLS--SL  132 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~l~~n~i~~lp~~~~~~~--~L  132 (150)
                      +..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++.+|..+..+++ |+++++++|.++.+|..+...+  +|
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence            8999999999999999887888 788888889999988888888888888888 8888888888888887766544  67


Q ss_pred             CEEEccCCCCC-CCCCC
Q 047447          133 KRLVLSDNPLK-ILPKI  148 (150)
Q Consensus       133 ~~l~l~~n~l~-~~p~~  148 (150)
                      +.+++++|.+. .+|..
T Consensus       405 ~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             EEEECCSSCTTTTTTCS
T ss_pred             CEEECcCCcCCCcchhh
Confidence            77777777776 44443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=1.1e-17  Score=117.91  Aligned_cols=65  Identities=34%  Similarity=0.417  Sum_probs=38.5

Q ss_pred             cCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCCCCCCCCCC
Q 047447           85 ALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus        85 ~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      +|+.+++++|.++.+ +..+..+++|+.+++++|.+++++ ..+..+++|+.|++++|.+..+|..+
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l  259 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL  259 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence            344444555555533 345566666667777666666643 34666666777777766666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=8.6e-18  Score=123.03  Aligned_cols=108  Identities=30%  Similarity=0.357  Sum_probs=70.8

Q ss_pred             cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|+..+.++. .+..+++|++|++++|.+.+. | .+..+++|+.|++++|.++.+ +..+..+++|+.+++++
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence            4455555444444442 355566666666666665543 2 355666777777777777755 44667777888888888


Q ss_pred             CcCcc-cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447          117 NGLKR-LPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       117 n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      |.++. .+..+..+++|+.|++++|.++.+|..
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence            88777 355677788888888888888776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=7.5e-18  Score=123.06  Aligned_cols=110  Identities=25%  Similarity=0.293  Sum_probs=92.6

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+ +..+..+++|+++++++|
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred             eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence            3455555555555667788899999999999999888888899999999999999999876 457789999999999999


Q ss_pred             cCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447          118 GLKRL-PESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       118 ~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      .++++ |..+..+++|++|++++|.++.+|..
T Consensus       358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhhccccccccEEECCCCccccCCHh
Confidence            99984 77899999999999999999988763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=3.1e-18  Score=115.64  Aligned_cols=145  Identities=18%  Similarity=0.072  Sum_probs=102.5

Q ss_pred             CCCCcEEecccCCCccccccCCcc-------ccCCC-cCcccccc---------cceecccccCCCcCcccccCCCCcc-
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGG-IGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLT-   63 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~-~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~-   63 (150)
                      +++|++|++++|...+.++...+.       +++++ |.++.++.         ++|++++|.+. .+|. +..+++|+ 
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~  131 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDI  131 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCS
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-ccccccccc
Confidence            567777777777534444442221       66666 66666553         66777776543 3555 66677776 


Q ss_pred             --EEEeecC-cccCCCchhhcCcCcCc-eEEecCCCCCccchhhcCCCCCCEEEccCCc-CcccC-ccccCC-CCCCEEE
Q 047447           64 --SLEIIDC-QNFKILPYELGNLKALE-TLIVDGTLIREVPESLGQLSSLKILVLTNNG-LKRLP-ESLNQL-SSLKRLV  136 (150)
Q Consensus        64 --~L~l~~~-~~~~~~~~~~~~l~~L~-~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~-i~~lp-~~~~~~-~~L~~l~  136 (150)
                        +|++++| .+.+..+..|..+++|+ .+++++|.++.+|......++|+.+++++|. ++.++ ..+..+ ++|+.++
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence              8888887 66665566678888888 8888888888777654344788889999885 88865 457788 8899999


Q ss_pred             ccCCCCCCCCCC
Q 047447          137 LSDNPLKILPKI  148 (150)
Q Consensus       137 l~~n~l~~~p~~  148 (150)
                      +++|+++.+|..
T Consensus       212 l~~N~l~~l~~~  223 (239)
T 2xwt_C          212 VSQTSVTALPSK  223 (239)
T ss_dssp             CTTCCCCCCCCT
T ss_pred             CCCCccccCChh
Confidence            999999888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=121.56  Aligned_cols=147  Identities=20%  Similarity=0.164  Sum_probs=113.6

Q ss_pred             CCCcEEecccCCCccccccCC--cc------ccCCCcCccc------------ccc-cceecccccCCCcCcccccCCCC
Q 047447            3 KSLQSIEISNCSILKRFLEIP--SC------NIDGGIGIER------------LAS-CKLVLEKCLSLQSLPSSLCMFKS   61 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~--~~------l~l~~~~l~~------------l~~-~~L~l~~~~~~~~~~~~~~~l~~   61 (150)
                      +.|++|++++|.+.+..|..+  ..      +++++|.++.            ++. ++|++++|.+....+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            569999999999888777765  22      8888888775            223 88999998876777778889999


Q ss_pred             ccEEEeecCcccCC--C--chhhcCcCcCceEEecCCCCCccchh----hcCCCCCCEEEccCCcCccc-CccccCC---
Q 047447           62 LTSLEIIDCQNFKI--L--PYELGNLKALETLIVDGTLIREVPES----LGQLSSLKILVLTNNGLKRL-PESLNQL---  129 (150)
Q Consensus        62 L~~L~l~~~~~~~~--~--~~~~~~l~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~l~~n~i~~l-p~~~~~~---  129 (150)
                      |++|++++|.+.+.  .  +..+..+++|+.|++++|.++.++..    +..+++|++|++++|.+++. |..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            99999999987653  2  12235788899999999988765542    46778889999999998884 7766665   


Q ss_pred             CCCCEEEccCCCCCCCCCCC
Q 047447          130 SSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus       130 ~~L~~l~l~~n~l~~~p~~~  149 (150)
                      ++|++|++++|.++.+|..+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~  270 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGL  270 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCC
T ss_pred             CcCCEEECCCCCCCchhhhh
Confidence            58888888888888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=7.6e-18  Score=120.20  Aligned_cols=141  Identities=23%  Similarity=0.258  Sum_probs=109.4

Q ss_pred             cEEecccCCCccccccCCcc----ccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447            6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ   71 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   71 (150)
                      +.++++++. ++.+|..+..    +++++|.++.++.          ++|++++|.+....+..|..+++|++|++++|.
T Consensus        21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            467777755 3345554433    7777777775543          678899876666556678889999999999998


Q ss_pred             ccCCCchhhcCcCcCceEEecCCCCCccc-hhhcCCCCCCEEEccCCcCcccCccc----cCCCCCCEEEccCCCCCCCC
Q 047447           72 NFKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNNGLKRLPESL----NQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~i~~lp~~~----~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +.+..+..|..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.+|..+    ..+++|+.|++++|.++.+|
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            88777777888999999999999998764 47788999999999999999988764    56889999999999998877


Q ss_pred             C
Q 047447          147 K  147 (150)
Q Consensus       147 ~  147 (150)
                      .
T Consensus       180 ~  180 (361)
T 2xot_A          180 L  180 (361)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=121.73  Aligned_cols=108  Identities=24%  Similarity=0.372  Sum_probs=67.1

Q ss_pred             cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|+..+.++. .+..+++|++|++++|.+... | .+..+++|+.|++++|.++.+ +..+..+++|+.|++++
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence            4445555444443332 345566666666666555432 2 255666677777777766655 34566777777777777


Q ss_pred             CcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447          117 NGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       117 n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      |.++.+ +..+..+++|+.|++++|.++.+|..
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence            777773 44577777888888888887766653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.7e-18  Score=112.65  Aligned_cols=123  Identities=26%  Similarity=0.404  Sum_probs=109.7

Q ss_pred             ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447           26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV   99 (150)
Q Consensus        26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l   99 (150)
                      ++++++.++.+|.      +.|++++|.+....+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+
T Consensus        16 v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             EECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             EEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            7788888888876      8899999876665566788999999999999999998899999999999999999999998


Q ss_pred             chh-hcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447          100 PES-LGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       100 ~~~-~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      |+. +..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|..
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            874 58899999999999999995 56789999999999999999987763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=3.9e-18  Score=117.39  Aligned_cols=120  Identities=19%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             CCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      .|++|++++|.+.+..+..+..      +++++|.++.++.         ++|++++|.+....+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            5888899888765543323322      7777777776554         778888876666656677788888888888


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCcccC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKRLP  123 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~lp  123 (150)
                      +|.+.+..+..+..+++|+.|++++|.++.  +|..+..+++|+++++++|.+++++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            888777666567788888888888888875  5677788888888888888877643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=4.5e-18  Score=122.24  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447           26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV   99 (150)
Q Consensus        26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l   99 (150)
                      +++++|.+..+|.      ++|++++|.+...  ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+
T Consensus       210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          210 LDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  287 (390)
T ss_dssp             EECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred             EECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence            5566666655544      6677777654432  4577888899999999888888788888888899999999988887


Q ss_pred             chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447          100 PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       100 ~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +..+..+++|+++++++|.++.+|..+..+++|+.|++++|.+..+|
T Consensus       288 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence            77777888899999999988888887888888888888888887665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=8.3e-18  Score=122.73  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=86.7

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      +++|++|+|++|.+.+..+..+..      +++++|.++.++.         ++|++++|.+....+..+..+++|++|+
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence            455556666655543322222211      5555555554443         5556666544433334455666666666


Q ss_pred             eecCcccCCCc-hhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCC
Q 047447           67 IIDCQNFKILP-YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus        67 l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~  144 (150)
                      +++|+..+.++ ..|..+++|+.|++++|.++.+| .+..+++|+.|++++|.++++ |..+..+++|+.|++++|.+..
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence            66654444433 35666777777777777777665 356677777888888877774 5667778888888888888775


Q ss_pred             CC
Q 047447          145 LP  146 (150)
Q Consensus       145 ~p  146 (150)
                      ++
T Consensus       246 ~~  247 (440)
T 3zyj_A          246 IE  247 (440)
T ss_dssp             EC
T ss_pred             EC
Confidence            43

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=9.1e-18  Score=125.81  Aligned_cols=140  Identities=18%  Similarity=0.178  Sum_probs=96.7

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-----------cceecccccCCCcCcc-cccCCCCcc
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-----------CKLVLEKCLSLQSLPS-SLCMFKSLT   63 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-----------~~L~l~~~~~~~~~~~-~~~~l~~L~   63 (150)
                      +++|++|++++|.+.+..|..+..      +++++|.++.++.           ++|++++|.+.+.+|. .+..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            467777777777776655554433      6777777765432           6677777666554554 356677777


Q ss_pred             EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447           64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL  142 (150)
Q Consensus        64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l  142 (150)
                      +|++++|.+.+..|..+.  ++|+.+++++|.++.+|..+..+++|+++++++|.++.+|.. +..+++|+.+++++|++
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            777777777665554332  567778888777777777666777788888888877777766 67777788888887776


Q ss_pred             C
Q 047447          143 K  143 (150)
Q Consensus       143 ~  143 (150)
                      .
T Consensus       510 ~  510 (562)
T 3a79_B          510 D  510 (562)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=122.44  Aligned_cols=139  Identities=19%  Similarity=0.166  Sum_probs=82.1

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      +++|++|+|++|.+.+..|..+..      +++++|.++.+|.         ++|++++|.+....+..+..+++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            456666666666555443433322      5666666655543         5666666655555555566666666666


Q ss_pred             eecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCC
Q 047447           67 IIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n  140 (150)
                      +++|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+.+++++|.+..++ ..+..+++|+.+++++|
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            66666666555566666667777776666665554 4566666666666666666533 23455555555544443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.1e-18  Score=136.16  Aligned_cols=144  Identities=19%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             CCCCcEEecccCCCcc-----------------ccccCCc--c------ccCCCcCcc-cccc--------cceeccccc
Q 047447            2 LKSLQSIEISNCSILK-----------------RFLEIPS--C------NIDGGIGIE-RLAS--------CKLVLEKCL   47 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~-----------------~~p~~~~--~------l~l~~~~l~-~l~~--------~~L~l~~~~   47 (150)
                      +++|++|+|++|.+.+                 .+|..+.  .      +++++|.+. .+|.        ++|++++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5677777777777666                 2555543  2      444444322 2222        445555544


Q ss_pred             -CCC-cCcccccCCC-------CccEEEeecCcccCCCch--hhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccC
Q 047447           48 -SLQ-SLPSSLCMFK-------SLTSLEIIDCQNFKILPY--ELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN  116 (150)
Q Consensus        48 -~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~  116 (150)
                       +.+ .+|..++.++       +|++|++++|.+. .+|.  .+..+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence             333 3443333222       5555555555544 3444  4555555555555555555444 444555555555555


Q ss_pred             CcCcccCccccCCCC-CCEEEccCCCCCCCCC
Q 047447          117 NGLKRLPESLNQLSS-LKRLVLSDNPLKILPK  147 (150)
Q Consensus       117 n~i~~lp~~~~~~~~-L~~l~l~~n~l~~~p~  147 (150)
                      |.++.+|..+..+++ |+.|++++|.+..+|.
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~  636 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN  636 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred             CccccchHHHhhccccCCEEECcCCCCCcCch
Confidence            555555555555554 5555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.6e-17  Score=125.34  Aligned_cols=94  Identities=15%  Similarity=0.052  Sum_probs=40.7

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      ++.|++|+|++|.+.+..|..+..      +++++|.++.++.         ++|++++|.+....+..|..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            345555555555444322222221      4455554444332         4445555433222222234445555555


Q ss_pred             eecCcccCCCchhhcCcCcCceEEecCCC
Q 047447           67 IIDCQNFKILPYELGNLKALETLIVDGTL   95 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~   95 (150)
                      +++|.+.+..|..|..+++|+.|++++|.
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            55544444444444444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=1.7e-17  Score=119.22  Aligned_cols=64  Identities=22%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             CcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           84 KALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        84 ~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      ++|+.+++++|.++.+ |..+..+++|+.+++++|.++++|..+..+++|++|++++|.+..+|.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc
Confidence            3444444444444432 234444555555555555555444444445555555555555554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=7.6e-18  Score=126.99  Aligned_cols=131  Identities=20%  Similarity=0.214  Sum_probs=102.3

Q ss_pred             ccccccCC----ccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcC
Q 047447           16 LKRFLEIP----SCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGN   82 (150)
Q Consensus        16 ~~~~p~~~----~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   82 (150)
                      +..+|..+    ..+++++|.|+.++.         ++|++++|.+.+..+..|.++++|++|++++|++.+..+..|.+
T Consensus        43 l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           43 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            34455433    337788887777664         78889887665555566888899999999998888777778888


Q ss_pred             cCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCCCCCCCC
Q 047447           83 LKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        83 l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +++|+.|++++|.++.+++ .++.+++|++|++++|.++.  .|..+..+++|++|++++|.++.++
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            8999999999998887776 57888899999999998876  4667788888999999998887543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.4e-17  Score=125.72  Aligned_cols=146  Identities=16%  Similarity=0.069  Sum_probs=82.1

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      ++.|++|+|++|.+.+..|..+..      +++++|.++.+|.         ++|++++|.+.+..|..+..+++|++|+
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            567777777777655543333222      6677777666554         6667777665555555566666666666


Q ss_pred             eecCcccCCCc-----------------------------------------------------------hhhcCcCcCc
Q 047447           67 IIDCQNFKILP-----------------------------------------------------------YELGNLKALE   87 (150)
Q Consensus        67 l~~~~~~~~~~-----------------------------------------------------------~~~~~l~~L~   87 (150)
                      +++|.+.+...                                                           ..+..+++|+
T Consensus       178 L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~  257 (597)
T 3oja_B          178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV  257 (597)
T ss_dssp             CTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             CcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC
Confidence            66665543211                                                           1233445555


Q ss_pred             eEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           88 TLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        88 ~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .|++++|.+..+ |..+..+++|+.|++++|.++++|..+..+++|+.|++++|.+..+|.
T Consensus       258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~  318 (597)
T 3oja_B          258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER  318 (597)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc
Confidence            555555555533 334555555555555555555555444555555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=2.7e-17  Score=125.49  Aligned_cols=146  Identities=25%  Similarity=0.238  Sum_probs=78.7

Q ss_pred             CCCCcEEecccCCCccccccCCc-------cccCCCcCcccccc---------cceecccccCC--CcCcccccCCCCcc
Q 047447            2 LKSLQSIEISNCSILKRFLEIPS-------CNIDGGIGIERLAS---------CKLVLEKCLSL--QSLPSSLCMFKSLT   63 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~-------~l~l~~~~l~~l~~---------~~L~l~~~~~~--~~~~~~~~~l~~L~   63 (150)
                      +++|++|++++|.+.+.+|....       .+++++|.+..++.         ++|++++|...  +..|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            44555666665555444432111       14555555443221         44445444332  34455566666666


Q ss_pred             EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch---------hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCC
Q 047447           64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE---------SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLK  133 (150)
Q Consensus        64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---------~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~  133 (150)
                      +|++++|.+.+..+..|..+++|+.+++++|.++.++.         .+..+++|+.+++++|.++.+|.. +..+++|+
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            66666666666555556666666666666666553321         144556666666666666665543 55566666


Q ss_pred             EEEccCCCCCCCCC
Q 047447          134 RLVLSDNPLKILPK  147 (150)
Q Consensus       134 ~l~l~~n~l~~~p~  147 (150)
                      .+++++|.++.+|.
T Consensus       564 ~L~Ls~N~l~~l~~  577 (680)
T 1ziw_A          564 IIDLGLNNLNTLPA  577 (680)
T ss_dssp             EEECCSSCCCCCCT
T ss_pred             eeECCCCCCCcCCH
Confidence            66666666665554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=2.8e-17  Score=115.84  Aligned_cols=142  Identities=18%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             CCCCcEEecccCCCcc--ccccCC-----ccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            2 LKSLQSIEISNCSILK--RFLEIP-----SCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~--~~p~~~-----~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      +++|++|++++|.+..  ..|..+     ..+++++|.++.+|.      ++|++++|.+....+..+..+++|++|+++
T Consensus       146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            5778888888877642  223322     227788888887775      889999987777666788999999999999


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccC------CCCCCEEEccCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQ------LSSLKRLVLSDNP  141 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~------~~~L~~l~l~~n~  141 (150)
                      +|.+.+..+..+..+++|+.+++++|.++.+|..+..+++|+++++++|.++.++.. +..      ...++.+++++|+
T Consensus       226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            999999888889999999999999999999999899999999999999999997543 433      4679999999999


Q ss_pred             CC
Q 047447          142 LK  143 (150)
Q Consensus       142 l~  143 (150)
                      +.
T Consensus       306 ~~  307 (332)
T 2ft3_A          306 VP  307 (332)
T ss_dssp             SC
T ss_pred             cc
Confidence            86

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=3.4e-17  Score=114.54  Aligned_cols=137  Identities=20%  Similarity=0.249  Sum_probs=78.3

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      +++|++|++++|.+.+ ++. +..      +++++|.++.++.       ++|++++|.+.. ++. +..+++|++|+++
T Consensus        62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECC
Confidence            4566666666665443 222 111      5666666655443       566666654332 332 5566666666666


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +|.+.+..+  +..+++|+.|++++|.++.++. +..+++|+.+++++|.+++++. +..+++|++|++++|.+..++
T Consensus       138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence            665554432  5566666666666666665544 5566666666666666666543 555666666666666665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=8.2e-17  Score=106.55  Aligned_cols=105  Identities=26%  Similarity=0.334  Sum_probs=87.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.++.+++ .+..+++|+++++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            688999876654444556789999999999998887777778889999999999999987776 4688999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~  143 (150)
                      .+++++.. +..+++|+++++++|++.
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          135 QLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccceeCHHHhccCCCccEEEecCCCee
Confidence            99987654 788899999999999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2.7e-17  Score=120.41  Aligned_cols=106  Identities=22%  Similarity=0.288  Sum_probs=63.7

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+....+..+..+++|++|++++|+..+.++ ..|..+++|+.|++++|.++.+| .+..+++|+.|++++|
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN  228 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCC
Confidence            444555543332222344445555555555543333333 34556666777777777666654 3556677777777777


Q ss_pred             cCccc-CccccCCCCCCEEEccCCCCCCC
Q 047447          118 GLKRL-PESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus       118 ~i~~l-p~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      .++++ |..+..+++|+.|++++|.+..+
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceE
Confidence            77774 55677788888888888887744

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=1e-17  Score=117.53  Aligned_cols=139  Identities=15%  Similarity=0.064  Sum_probs=111.0

Q ss_pred             CCCcEEecccCCCccccccCCcc---ccCCCcCcccccc---------cceecccccCCCcCcccc-cCCCCccEEEeec
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC---NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSL-CMFKSLTSLEIID   69 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~---l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~   69 (150)
                      +.|++|++++|.+.+..+..+..   +++++|.++.++.         ++|++++|.+....+..+ ..+++|++|++++
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            45555555555544433333222   8888888887654         889999987766666665 4789999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      |.+.+..+  ...+++|+.+++++|.++.+++.+..+++|+++++++|.++.+|..+..+++|+.+++++|++.
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             CcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            99877632  3458999999999999999988888999999999999999999999999999999999999986

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=4.3e-18  Score=119.22  Aligned_cols=143  Identities=23%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             CCCCcEEecccCCCccccc-----------cCCccccCCCcCcccccc---------cceecccccCCCc--Ccccc--c
Q 047447            2 LKSLQSIEISNCSILKRFL-----------EIPSCNIDGGIGIERLAS---------CKLVLEKCLSLQS--LPSSL--C   57 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p-----------~~~~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~--~~~~~--~   57 (150)
                      +++|++|++++|.+.+. |           ..+..+++++|.++.++.         ++|++++|...+.  .+..+  .
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            56788888888776653 3           223336777777776653         7777887765543  23333  6


Q ss_pred             CCCCccEEEeecCcccCC--Cc-hhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCccccCCCCC
Q 047447           58 MFKSLTSLEIIDCQNFKI--LP-YELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPESLNQLSSL  132 (150)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~--~~-~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L  132 (150)
                      .+++|++|++++|.+.+.  .+ ..+..+++|+.|++++|.++..+  ..+..+++|+++++++|.++.+|..+.  ++|
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L  276 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL  276 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence            677788888877776632  22 23446677777777777777543  234556777777777777777776655  677


Q ss_pred             CEEEccCCCCCCCCC
Q 047447          133 KRLVLSDNPLKILPK  147 (150)
Q Consensus       133 ~~l~l~~n~l~~~p~  147 (150)
                      ++|++++|+++.+|.
T Consensus       277 ~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          277 SVLDLSYNRLDRNPS  291 (312)
T ss_dssp             EEEECCSSCCCSCCC
T ss_pred             eEEECCCCCCCCChh
Confidence            777777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2e-17  Score=114.94  Aligned_cols=112  Identities=25%  Similarity=0.246  Sum_probs=58.0

Q ss_pred             ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      +++++|.++.++.       ++|++++|.+.. + ..+..+++|+.|++++|.+.+.  +.+..+++|+.|++++|.++.
T Consensus        95 L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            4455555444433       455555543322 2 2344555555555555554443  334555555555555555554


Q ss_pred             cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +++ +..+++|+++++++|.+++++. +..+++|+.+++++|++.
T Consensus       171 ~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence            443 4555555555555555555542 555555666665555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.5e-17  Score=110.17  Aligned_cols=124  Identities=17%  Similarity=0.202  Sum_probs=108.5

Q ss_pred             ccCCCcCcccccc------cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS------CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      ++++++.++.+|.      ++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus        16 l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~   95 (220)
T 2v70_A           16 VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN   95 (220)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence            8899999998887      789999977655544 447899999999999999998888889999999999999999998


Q ss_pred             cch-hhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCC-CCCC
Q 047447           99 VPE-SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKIL-PKIL  149 (150)
Q Consensus        99 l~~-~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~-p~~~  149 (150)
                      +++ .+..+++|++|++++|.++++ |..+..+++|++|++++|.++.+ |..+
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence            766 578999999999999999995 67799999999999999999966 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.7e-17  Score=108.73  Aligned_cols=126  Identities=21%  Similarity=0.259  Sum_probs=101.8

Q ss_pred             cEEecccCCCccccccCCccccCCCcCcccccccceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcC
Q 047447            6 QSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLK   84 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~   84 (150)
                      ++++++++.+ +.+|..+..      .+     ++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..|..++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~------~l-----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL------HT-----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT------TC-----SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CEEEcCCCCc-CcCccCCCC------CC-----CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence            4566666553 445543321      11     5789999765444443 378999999999999999998899999999


Q ss_pred             cCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447           85 ALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        85 ~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +|+.|++++|.++.+++ .+..+++|++|++++|.+++ .|..+..+++|+++++++|++.
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99999999999997765 57889999999999999998 5778999999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.9e-18  Score=121.18  Aligned_cols=23  Identities=48%  Similarity=0.560  Sum_probs=14.3

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCC
Q 047447          126 LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       126 ~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      +..+++|+.|++++|.++.+|..
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~  295 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDG  295 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTT
T ss_pred             HhcccCCCEEECCCCCCCccCHH
Confidence            34556666666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.8e-17  Score=122.56  Aligned_cols=139  Identities=15%  Similarity=0.064  Sum_probs=112.9

Q ss_pred             CCCcEEecccCCCccccccCCc---cccCCCcCcccccc---------cceecccccCCCcCccccc-CCCCccEEEeec
Q 047447            3 KSLQSIEISNCSILKRFLEIPS---CNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLC-MFKSLTSLEIID   69 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~---~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~   69 (150)
                      +.|++|++++|.+.+..+..+.   .+++++|.++.++.         ++|++++|.+.+..|..+. .+++|+.|++++
T Consensus        99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            3455555555554443333222   28888888886643         8899999888777777776 799999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      |.+.+..+  ...+++|+.|++++|.++.+|+.+..+++|+.+++++|.++++|..+..+++|+.+++++|++.
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             Cccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            99887633  3468999999999999999988888999999999999999999999999999999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=1.8e-17  Score=124.93  Aligned_cols=120  Identities=23%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447           26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI   96 (150)
Q Consensus        26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l   96 (150)
                      +++++|.++.++.         ++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            5555555554433         5666666555544455566666666666666666666666666666666666666666


Q ss_pred             Cccc-hhhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCCCCCCC
Q 047447           97 REVP-ESLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus        97 ~~l~-~~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      ..++ ..++.+++|+++++++|.+++  +|..++.+++|++|++++|.+..+
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            6554 355666666666666666654  566666666666666666666643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=6.4e-17  Score=121.96  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=54.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCC---CchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVL  114 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l  114 (150)
                      ++|++++|.+....|..+..+++|++|++++|.+.+.   .+..+..+++|+.+++++|.++.+ |..+..+++|+++++
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence            4455555444444444445555555555555554431   113344555555555555555533 234455555555555


Q ss_pred             cCCcCcc-cCccccCCCCCCEEEccCCCCCCCC
Q 047447          115 TNNGLKR-LPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       115 ~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      ++|.+++ .|..+..++.| .+++++|.++.+|
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~  539 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIIL  539 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence            5555555 34445555555 5555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=124.40  Aligned_cols=107  Identities=26%  Similarity=0.328  Sum_probs=49.0

Q ss_pred             cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC--ccchhhcCCCCCCEEEcc
Q 047447           39 CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR--EVPESLGQLSSLKILVLT  115 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~  115 (150)
                      ++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+.  .+|..+..+++|+.++++
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  478 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  478 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence            444444443333222 23444455555555555444444444444445555555554443  234444444445555554


Q ss_pred             CCcCccc-CccccCCCCCCEEEccCCCCCCC
Q 047447          116 NNGLKRL-PESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus       116 ~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      +|.++++ |..+..+++|+++++++|.++.+
T Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            4444442 34444444444444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=6.2e-17  Score=106.22  Aligned_cols=104  Identities=29%  Similarity=0.452  Sum_probs=92.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+ ..+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|++|++++|
T Consensus        34 ~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence            6789999654 5778889999999999999999998888889999999999999999998765 6789999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~  143 (150)
                      .++.+|.. +..+++|+.+++++|++.
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          113 DISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCeeChhhhhcCccccEEEeCCCCee
Confidence            99997764 788999999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=3.1e-17  Score=120.60  Aligned_cols=146  Identities=21%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceeccc---------------------
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEK---------------------   45 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~---------------------   45 (150)
                      +++|++|++++|.+.+..|..+..      +++++|.++.++.         +.|++++                     
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence            566777777776655433333222      5555555554432         3444444                     


Q ss_pred             ---ccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc
Q 047447           46 ---CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        46 ---~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~  121 (150)
                         |...+.++.......+|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+++
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence               33333333333333355555555555554444456667777777777777765544 45667777777777777777


Q ss_pred             -cCccccCCCCCCEEEccCCCCCCCCC
Q 047447          122 -LPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       122 -lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                       .|..+..+++|+.|++++|.++.+|.
T Consensus       287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          287 VEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             ECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             ECHHHhcCcccCCEEECCCCcCceeCH
Confidence             35567777777777777777776664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=4.6e-17  Score=113.91  Aligned_cols=140  Identities=23%  Similarity=0.264  Sum_probs=115.8

Q ss_pred             CCCCCcEEecccCCCccccccCC-----ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            1 MLKSLQSIEISNCSILKRFLEIP-----SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~-----~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      .+++|++|++++|.+.+ ++...     ..+++++|.++.++.       ++|++++|.+.. ++. +..+++|++|+++
T Consensus        83 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           83 NLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             TCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECC
T ss_pred             cCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEcc
Confidence            47899999999998554 44321     228899999887765       889999976544 443 7889999999999


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      +|.+.+..+  +..+++|+.|++++|.++.+++ +..+++|+++++++|.+++++ .+..+++|+.+++++|++...|.
T Consensus       160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence            998877544  8899999999999999998775 778999999999999999977 48899999999999999887664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.72  E-value=2.5e-17  Score=123.18  Aligned_cols=145  Identities=20%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      +++|++|++++|.+.+..+.     .+..+++++|.+...+.          ++|++++|...+..|..+..+++|++|+
T Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            56677777777664432221     11227777777765422          8899999988888888899999999999


Q ss_pred             eecCccc-CCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCCCC
Q 047447           67 IIDCQNF-KILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        67 l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +++|.+. +.+|..+..+++|+.|++++|.++.+ |..+..+++|+++++++|.+++++ ..+..+++|+.+++++|++.
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999987 56788899999999999999999976 668899999999999999999965 45889999999999999987


Q ss_pred             -CCC
Q 047447          144 -ILP  146 (150)
Q Consensus       144 -~~p  146 (150)
                       ..|
T Consensus       532 ~~~~  535 (570)
T 2z63_A          532 CSCP  535 (570)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence             554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=115.80  Aligned_cols=84  Identities=24%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             cCCCCccEEEeecCcccCCCchhhcCc---CcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCC
Q 047447           57 CMFKSLTSLEIIDCQNFKILPYELGNL---KALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLK  133 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~  133 (150)
                      ..+++|++|++++|.+.+..|+.+..+   ++|+.|++++|.++.+|..+.  ++|+.+++++|.++++|. +..+++|+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~  297 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD  297 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence            344555555555555555444433333   355555555555555544332  455555555555555443 34455555


Q ss_pred             EEEccCCCCC
Q 047447          134 RLVLSDNPLK  143 (150)
Q Consensus       134 ~l~l~~n~l~  143 (150)
                      .+++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            5555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.8e-17  Score=110.28  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CCCcEEecccCCCcccccc-CCcc------ccCCCcC-cccccc---------cceeccc-ccCCCcCcccccCCCCccE
Q 047447            3 KSLQSIEISNCSILKRFLE-IPSC------NIDGGIG-IERLAS---------CKLVLEK-CLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~-~~~~------l~l~~~~-l~~l~~---------~~L~l~~-~~~~~~~~~~~~~l~~L~~   64 (150)
                      +.|++|++++|.+.+ +|. .+..      +++++|. ++.++.         ++|++++ |.+....+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            368899999987654 444 3322      7777775 766654         7788887 4443333456778888888


Q ss_pred             EEeecCcccCCCchhhcCcCcCc---eEEecCC-CCCccch-hhcCCCCCC-EEEccCCcCcccCccccCCCCCCEEEcc
Q 047447           65 LEIIDCQNFKILPYELGNLKALE---TLIVDGT-LIREVPE-SLGQLSSLK-ILVLTNNGLKRLPESLNQLSSLKRLVLS  138 (150)
Q Consensus        65 L~l~~~~~~~~~~~~~~~l~~L~---~l~l~~n-~l~~l~~-~~~~~~~L~-~l~l~~n~i~~lp~~~~~~~~L~~l~l~  138 (150)
                      |++++|.+.+ +|. +..+++++   .+++++| .++.+++ .+..+++|+ .+++++|.++.+|......++|+.++++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            8888887766 444 67777777   8888888 7887765 467788888 8888888888877654344778888888


Q ss_pred             CCC-CCCCCC
Q 047447          139 DNP-LKILPK  147 (150)
Q Consensus       139 ~n~-l~~~p~  147 (150)
                      +|+ ++.+|.
T Consensus       188 ~n~~l~~i~~  197 (239)
T 2xwt_C          188 KNKYLTVIDK  197 (239)
T ss_dssp             TCTTCCEECT
T ss_pred             CCCCcccCCH
Confidence            885 776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=8e-17  Score=121.43  Aligned_cols=105  Identities=22%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc--cc--hhhcCCCCCCEEE
Q 047447           39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE--VP--ESLGQLSSLKILV  113 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~--~~~~~~~~L~~l~  113 (150)
                      ++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+..  ++  ..+..+++|+.++
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            4455555444433332 25556666666666666666556666666666666666666653  12  3456666777777


Q ss_pred             ccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447          114 LTNNGLKR-LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       114 l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +++|.+++ .|..+..+++|+.+++++|++.
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccC
Confidence            77777666 3556677777777777777766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=4.8e-17  Score=102.37  Aligned_cols=124  Identities=19%  Similarity=0.157  Sum_probs=93.8

Q ss_pred             CCCcEEecccCCCc-cccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhh
Q 047447            3 KSLQSIEISNCSIL-KRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL   80 (150)
Q Consensus         3 ~~L~~L~l~~~~~~-~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   80 (150)
                      +.|++|++++|.+. +.+|..+..          ++. ++|++++|.+...  ..+..+++|++|++++|.+.+.+|..+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~----------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDE----------FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTT----------CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhh----------cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            56888888888766 455553322          222 5778888755443  567788889999999888888777777


Q ss_pred             cCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCc----cccCCCCCCEEEcc
Q 047447           81 GNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPE----SLNQLSSLKRLVLS  138 (150)
Q Consensus        81 ~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~----~~~~~~~L~~l~l~  138 (150)
                      ..+++|+.+++++|.++.++  ..+..+++|+++++++|.+++++.    .+..+++|+.++++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77888999999988888764  567888889999998888888765    57788888888775

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=3.1e-16  Score=103.77  Aligned_cols=110  Identities=26%  Similarity=0.295  Sum_probs=95.7

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+++++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            689999987665555567899999999999999887777778899999999999999998876 4689999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      .++.++.. +..+++|+++++++|.++.+|..
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A          111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            99997654 78899999999999999977764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=1.9e-16  Score=109.99  Aligned_cols=139  Identities=27%  Similarity=0.289  Sum_probs=113.3

Q ss_pred             CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      ++.|++|++++|.+.. ++..     +..+++++|.++.++.       ++|++++|.+. .++ .+..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCccc-ChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCC
Confidence            4678999999987543 3431     2228888888887664       88999997654 344 488999999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.+.+.  +.+..+++|+.|++++|.++.+ +.+..+++|++|++++|.+++++. +..+++|+.|++++|.++.+|.
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence            988775  4578899999999999999987 567889999999999999999765 8899999999999999987764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=8.5e-17  Score=119.36  Aligned_cols=108  Identities=22%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             cceecccccCCC--cCcccccCCCCccEEEeecCcccCCCch-hhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEc
Q 047447           39 CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDCQNFKILPY-ELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVL  114 (150)
Q Consensus        39 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l  114 (150)
                      ++|++++|.+.+  .+|..+..+++|++|++++|.+.+.+|. .+..+++|+.+++++|.++ ..+..+.  ++|+.+++
T Consensus       351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence            444455443332  3333444555555555555554443332 2444455555555555543 2222221  57778888


Q ss_pred             cCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447          115 TNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       115 ~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      ++|.++.+|..+..+++|+++++++|+++.+|..
T Consensus       429 s~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          429 HSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             CSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            8888878887777888889999998888888864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=9.5e-17  Score=121.02  Aligned_cols=143  Identities=21%  Similarity=0.240  Sum_probs=114.8

Q ss_pred             CCcEEecccCCCcccccc-CCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            4 SLQSIEISNCSILKRFLE-IPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~-~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      .+++|||++|.+.+ +|. .+..      +++++|.|+.++.         ++|++++|++.+..+..|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            68999999988654 454 3332      8999999988765         88999997655444467899999999999


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCccc-CccccCCC----CCCEEEccCC
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKRL-PESLNQLS----SLKRLVLSDN  140 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~----~L~~l~l~~n  140 (150)
                      ++|.+.+..+..|+.+++|+.|++++|.++.  .|..+..++.|+++++++|.++++ +..+..+.    ....++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9999988777789999999999999999874  567788999999999999999985 44454433    3457888888


Q ss_pred             CCCCCCC
Q 047447          141 PLKILPK  147 (150)
Q Consensus       141 ~l~~~p~  147 (150)
                      .+..++.
T Consensus       212 ~l~~i~~  218 (635)
T 4g8a_A          212 PMNFIQP  218 (635)
T ss_dssp             CCCEECT
T ss_pred             cccccCc
Confidence            8876654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=3.3e-16  Score=101.23  Aligned_cols=106  Identities=25%  Similarity=0.340  Sum_probs=91.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.++.+++ .+..+++|+++++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            688999976655444567889999999999999888777778899999999999999998876 4688999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~  144 (150)
                      .++.+|.. +..+++|+++++++|++..
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          111 QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99998766 5789999999999999873

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=113.07  Aligned_cols=106  Identities=19%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhcCcCcCceEEecCC-CCCccc-hhhcCCCCCCEEEcc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELGNLKALETLIVDGT-LIREVP-ESLGQLSSLKILVLT  115 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l~l~  115 (150)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.+++++| .++.++ ..+..+++|++++++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            445555543332222224455555555555554443322 23445555555555555 244332 234455555555555


Q ss_pred             CCcCcc-cCccccCCCCCCEEEccCCCCCC
Q 047447          116 NNGLKR-LPESLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       116 ~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~  144 (150)
                      +|.+++ .|..+..+++|+++++++|.+..
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            555554 24445555555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.70  E-value=4e-16  Score=119.06  Aligned_cols=145  Identities=23%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             CCCCcEEecccCCCccccccCCc------cccCCCcCccc---ccc--------cceecccccCCCcCcccccCCCCccE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPS------CNIDGGIGIER---LAS--------CKLVLEKCLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~------~l~l~~~~l~~---l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~   64 (150)
                      ++.|++|++++|.+.+..+..+.      .+++++|.+..   +|.        ++|++++|.+.+..+..+..+++|++
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence            56788888888775543332222      15556555431   221        66777776555444455666777777


Q ss_pred             EEeecCcccCCCc--------hhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCE
Q 047447           65 LEIIDCQNFKILP--------YELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKR  134 (150)
Q Consensus        65 L~l~~~~~~~~~~--------~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~  134 (150)
                      |++++|.+.+..+        ..+..+++|+.+++++|.++.+|. .+..+++|+.+++++|.++.+|.. +..+++|+.
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            7777776654311        125566677777777777776665 456677777777777777775544 456667777


Q ss_pred             EEccCCCCCCCC
Q 047447          135 LVLSDNPLKILP  146 (150)
Q Consensus       135 l~l~~n~l~~~p  146 (150)
                      +++++|.++.++
T Consensus       589 L~L~~N~l~~~~  600 (680)
T 1ziw_A          589 LNLQKNLITSVE  600 (680)
T ss_dssp             EECTTSCCCBCC
T ss_pred             EECCCCcCCccC
Confidence            777777666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=3.2e-18  Score=128.56  Aligned_cols=106  Identities=26%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      +.|++++|.+ +.+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+| .++.+++|+.|++++|.
T Consensus       444 ~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          444 RVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             SEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             eEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            5689999754 45776 899999999999999888 67888999999999999999999988 88999999999999999


Q ss_pred             Cccc--CccccCCCCCCEEEccCCCCCCCCCC
Q 047447          119 LKRL--PESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       119 i~~l--p~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      ++++  |..++.+++|+.|++++|+++.+|+.
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9996  88999999999999999999977764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3.2e-16  Score=118.51  Aligned_cols=139  Identities=22%  Similarity=0.193  Sum_probs=92.4

Q ss_pred             CCCCcEEecccCCCcccccc----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            2 LKSLQSIEISNCSILKRFLE----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      |+.|++|+|++|.+.+..|-    .+..|++++|.+..++.       +.|++++|.+.. + +.+..+++|+.|++++|
T Consensus        64 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCC
Confidence            56777777777765543220    11116677776665544       667777765443 3 34667777777777777


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      .+.+.  ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+++++ .+..+++|+.|++++|++...|
T Consensus       142 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          142 KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             ccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            76665  456677777888887777776655 667777888888887777764 4677777888888777765444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.5e-16  Score=113.57  Aligned_cols=123  Identities=17%  Similarity=0.151  Sum_probs=109.5

Q ss_pred             ccCCCcCcccccc------cceecccccCCCcCccccc-CCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLC-MFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      ++++++.++.+|.      +.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus        23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence            7889999998887      7899999876665556666 89999999999999998888889999999999999999998


Q ss_pred             cch-hhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447           99 VPE-SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        99 l~~-~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      +++ .+..+++|+.|++++|.|+.+ +..+..+++|+.|++++|.++.+|..
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            876 678999999999999999995 67799999999999999999988864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=5.6e-16  Score=116.35  Aligned_cols=129  Identities=26%  Similarity=0.242  Sum_probs=66.1

Q ss_pred             CCcEEecccCCCccccccCCcc----ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447            4 SLQSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK   74 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   74 (150)
                      +|++|++++|.+.+ +|..+..    +++++|.++.+|.     ++|++++|.+.+ +|. +..  +|++|++++|.+.+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence            56667776665443 5543322    6666666665554     556666654433 444 333  55556665555544


Q ss_pred             CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           75 ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        75 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                       +|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|. +.  ++|+.|++++|.|+.+|.
T Consensus       135 -lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          135 -LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             -CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence             332   34455555555555554443   33445555555555555444 33  444555555544444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=5.1e-17  Score=121.15  Aligned_cols=124  Identities=19%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             CCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      +.|++|++++|.+.+..|..+..      +++++|.++.++.         ++|++++|.+.+..+..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            35677777776655443433322      5566665554442         55666665544444444566666666666


Q ss_pred             ecCcccCC-CchhhcCcCcCceEEecCCC-CCccch-hhcCCCCCCEEEccCCcCcc-cCccc
Q 047447           68 IDCQNFKI-LPYELGNLKALETLIVDGTL-IREVPE-SLGQLSSLKILVLTNNGLKR-LPESL  126 (150)
Q Consensus        68 ~~~~~~~~-~~~~~~~l~~L~~l~l~~n~-l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~  126 (150)
                      ++|.+.+. .|..+..+++|+.+++++|. ++.++. .+..+++|+++++++|.+++ .|..+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            66655542 34455566666666666665 344442 45556666666666666555 44433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=7e-17  Score=124.39  Aligned_cols=104  Identities=25%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      +.|++++|.+ ..+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|..++.+++|++|++++|.
T Consensus       227 ~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          227 HALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             CEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred             cEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence            7899999765 478877889999999999999888 77888999999999999999999999889999999999999999


Q ss_pred             CcccCccccCCCCCCEEEccCCCCCC
Q 047447          119 LKRLPESLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       119 i~~lp~~~~~~~~L~~l~l~~n~l~~  144 (150)
                      |+.+|..++.+++|++|++++|.++.
T Consensus       305 l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          305 VTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCccChhhhcCCCccEEeCCCCccCC
Confidence            99999999999999999999999883

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=5.1e-16  Score=116.58  Aligned_cols=129  Identities=22%  Similarity=0.246  Sum_probs=75.4

Q ss_pred             CCCCcEEecccCCCccccccCCc----cccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447            2 LKSLQSIEISNCSILKRFLEIPS----CNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN   72 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~----~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   72 (150)
                      +++|++|++++|.+.+ +|. +.    .+++++|.++.+|.     ++|++++|.+. .+|.   .+++|++|++++|.+
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred             cCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCC
Confidence            3455555555555443 444 22    15555565555553     55666664433 2443   455666666666665


Q ss_pred             cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCC-------CEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSL-------KILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L-------~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      .+ +|. +.  ++|+.|++++|.++.+|. +..  +|       +.+++++|.|+.+|..+..+++|+.|++++|+++
T Consensus       173 ~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          173 TF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            55 444 43  667777777777766665 432  55       7777777777777776666777777777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.2e-16  Score=106.82  Aligned_cols=137  Identities=20%  Similarity=0.180  Sum_probs=99.0

Q ss_pred             CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      +++|++|++++|.+. .+|..     +..+++++|.++.++.       ++|++++|.+. .++.. .. ++|++|++++
T Consensus        40 l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~  115 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDN  115 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCS
T ss_pred             cCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccC
Confidence            578899999988654 44521     1127778887776654       77888886543 34432 23 7888888888


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      |.+.+.  +.+..+++|+.|++++|.++.++ .+..+++|+++++++|.++++ ..+..+++|+.+++++|++...|
T Consensus       116 N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          116 NELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            877664  34778888888888888888775 567788888888888888887 56777888888888888776554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.67  E-value=7.8e-16  Score=115.35  Aligned_cols=143  Identities=16%  Similarity=0.148  Sum_probs=108.7

Q ss_pred             CCcEEecccCCCcccc----ccCCccccCCCcCccc-ccc--------cceecccccCCC--cCcccccCCCCccEEEee
Q 047447            4 SLQSIEISNCSILKRF----LEIPSCNIDGGIGIER-LAS--------CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~----p~~~~~l~l~~~~l~~-l~~--------~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~   68 (150)
                      .|++|++++|.+....    ...+..+++++|.++. +|.        ++|++++|.+.+  ..|..+..+++|++|+++
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            5788888887754321    1122238888888775 232        788898876554  334567888999999999


Q ss_pred             cCcccCCCc-hhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           69 DCQNFKILP-YELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        69 ~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +|.+.+.+| ..+..+++|+.+++++|.++ ..+..+.  ++|+.+++++|.++.+|..+..+++|++|++++|+++.+|
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence            988888555 45778889999999999886 3343332  6899999999999999988889999999999999999998


Q ss_pred             CC
Q 047447          147 KI  148 (150)
Q Consensus       147 ~~  148 (150)
                      ..
T Consensus       490 ~~  491 (562)
T 3a79_B          490 DG  491 (562)
T ss_dssp             TT
T ss_pred             HH
Confidence            75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=9.7e-16  Score=108.39  Aligned_cols=103  Identities=30%  Similarity=0.312  Sum_probs=63.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|.+.. .+. +..+++|++|++++|.+.+.  +.+..+++|+.+++++|.++.++ .+..+++|+.+++++|.
T Consensus       224 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          224 NSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred             CEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence            556666654332 222 55666666677666655543  34566666777777776666553 35566667777777776


Q ss_pred             Ccc-cCccccCCCCCCEEEccCCCCCCCC
Q 047447          119 LKR-LPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       119 i~~-lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      +++ .+..+..+++|+.+++++|++..++
T Consensus       299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          299 LGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCCcChhHhhccccCCEEEccCCcccccc
Confidence            665 3445666677777777777766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=8.8e-16  Score=112.77  Aligned_cols=117  Identities=22%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      +++++|.++.++.       ++|++++|.+.+. +. +..+++|+.|++++|.+.+..|  +..+++|+.+++++|.++.
T Consensus       270 L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          270 LKLGANQISNISPLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             EECCCCccCccccccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            4555555544332       5556666543332 22 4556666666666666555544  4566666666666666665


Q ss_pred             cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447           99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      + +.+..+++|+.+++++|.+++++. +..+++|+.+++++|++..+|..
T Consensus       346 ~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          346 V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred             c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence            5 345566777777777777766433 66677777777777766655543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=1.2e-15  Score=107.84  Aligned_cols=137  Identities=20%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             CCCCcEEecccCCCccccc----cCCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            2 LKSLQSIEISNCSILKRFL----EIPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p----~~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      ++.|++|++++|.+.+..+    ..+..+++++|.++.++.       ++|++++|.+.. + +.+..+++|++|++++|
T Consensus       198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred             CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence            3455555555554433221    112228888888887664       889999976544 4 45889999999999999


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      .+.+.  +.+..+++|+.+++++|.+... +..+..+++|+++++++|.+++++. +..+++|+.+++++|+++
T Consensus       276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            88775  4578999999999999999855 4578899999999999999999655 888999999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=4.3e-16  Score=116.19  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=116.1

Q ss_pred             CCCcEEecccCCCccccccCCcc----ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      +..-+.+.+++. .+.+|.....    +++++|.++.++.         ++|++++|.+.+..|..+..+++|++|++++
T Consensus         5 ~~~~~c~~~~~~-l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            5 DASGVCDGRSRS-FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             CTTSEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCceEECCCCc-cccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            444456666655 4456664433    8899998886643         8899999877776677888999999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCc-CcccC-ccccCCCCCCEEEccCCCCC-C
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNG-LKRLP-ESLNQLSSLKRLVLSDNPLK-I  144 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~-i~~lp-~~~~~~~~L~~l~l~~n~l~-~  144 (150)
                      |.+.+..+..+..+++|+.|++++|.++.  .+..++.+++|+++++++|. +..+| ..+..+++|++|++++|.+. .
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            99888888889999999999999998884  45678889999999999998 66666 46888999999999999988 4


Q ss_pred             CCCCC
Q 047447          145 LPKIL  149 (150)
Q Consensus       145 ~p~~~  149 (150)
                      .|..+
T Consensus       164 ~~~~l  168 (549)
T 2z81_A          164 QSQSL  168 (549)
T ss_dssp             CTTTT
T ss_pred             Chhhh
Confidence            56544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=2.9e-16  Score=101.45  Aligned_cols=127  Identities=14%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             CCCCcEEecccCCCccccccCCccccCCCcCccccc-c-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLA-S-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE   79 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~-~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   79 (150)
                      ++.|++|++++|.+. .+|..           .... . ++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~~-----------~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIENL-----------GATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCCG-----------GGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             cCCceEEEeeCCCCc-hhHHh-----------hhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcch
Confidence            567889999988755 33321           1111 2 588999976554 3 56888999999999999988766566


Q ss_pred             hcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcccCcc----ccCCCCCCEEEccCCCC
Q 047447           80 LGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKRLPES----LNQLSSLKRLVLSDNPL  142 (150)
Q Consensus        80 ~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~lp~~----~~~~~~L~~l~l~~n~l  142 (150)
                      +..+++|+.+++++|.++.+|.  .+..+++|+++++++|.++.+|..    +..+++|+.++++.|.+
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6899999999999999998887  778999999999999999998875    88899999999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=6e-16  Score=120.87  Aligned_cols=83  Identities=25%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh--hcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE--LGNLKALETLIVDGTLIREV--PESLGQLSSLKILVL  114 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l  114 (150)
                      ++|++++|.+.+..|..|..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..+  ++.++++++|++|++
T Consensus        76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            44444444443334444444444444444444444433322  44444444444444444422  123444444444444


Q ss_pred             cCCcCcc
Q 047447          115 TNNGLKR  121 (150)
Q Consensus       115 ~~n~i~~  121 (150)
                      ++|.+++
T Consensus       156 s~N~i~~  162 (844)
T 3j0a_A          156 SSNQIFL  162 (844)
T ss_dssp             ESSCCCC
T ss_pred             CCCcCCe
Confidence            4444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=3.2e-16  Score=98.57  Aligned_cols=107  Identities=26%  Similarity=0.263  Sum_probs=95.2

Q ss_pred             cceecccccCC-CcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc-cchhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSL-QSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE-VPESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~l~~  116 (150)
                      +.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.+++++|.++. +|..+..+++|+++++++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~   97 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG   97 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence            68899998776 58888888999999999999988876  668899999999999999997 777777899999999999


Q ss_pred             CcCcccC--ccccCCCCCCEEEccCCCCCCCCC
Q 047447          117 NGLKRLP--ESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       117 n~i~~lp--~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.+++++  ..+..+++|+++++++|.++.+|.
T Consensus        98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            9999965  778999999999999999987765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.66  E-value=2.2e-15  Score=110.61  Aligned_cols=78  Identities=26%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+..+++ +..+++|+.+++++|.
T Consensus       246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred             CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence            445555543322221  4444445555555444443322  3344444444444444443322 3334444444444444


Q ss_pred             Ccc
Q 047447          119 LKR  121 (150)
Q Consensus       119 i~~  121 (150)
                      +++
T Consensus       321 l~~  323 (466)
T 1o6v_A          321 ISD  323 (466)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.66  E-value=2.9e-15  Score=109.88  Aligned_cols=136  Identities=27%  Similarity=0.317  Sum_probs=72.5

Q ss_pred             CCCcEEecccCCCccccccCCcc---ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447            3 KSLQSIEISNCSILKRFLEIPSC---NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK   74 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~---l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   74 (150)
                      ++|++|++++|.+.+ +|.....   +++++|.++.++.     ++|++++|.+.+ +| .+..+++|++|++++|.+.+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence            356666666665444 4443322   5666666665443     666677654433 55 46667777777777666554


Q ss_pred             CCchhhcCcCcCceEEecCCCCCccchhhcCCCC--------------------CCEEEccCCcCcccCccccCCCCCCE
Q 047447           75 ILPYELGNLKALETLIVDGTLIREVPESLGQLSS--------------------LKILVLTNNGLKRLPESLNQLSSLKR  134 (150)
Q Consensus        75 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~--------------------L~~l~l~~n~i~~lp~~~~~~~~L~~  134 (150)
                       +|..   ..+|+.+++++|.++.+| .++.+++                    |+++++++|.++.+|. ++.+++|++
T Consensus       168 -lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~  241 (454)
T 1jl5_A          168 -LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTT  241 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred             -cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCE
Confidence             2221   124555555555444443 2334444                    4444444444444442 555666666


Q ss_pred             EEccCCCCCCCCC
Q 047447          135 LVLSDNPLKILPK  147 (150)
Q Consensus       135 l~l~~n~l~~~p~  147 (150)
                      +++++|.++.+|.
T Consensus       242 L~l~~N~l~~l~~  254 (454)
T 1jl5_A          242 IYADNNLLKTLPD  254 (454)
T ss_dssp             EECCSSCCSSCCS
T ss_pred             EECCCCcCCcccc
Confidence            6666666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=9.8e-16  Score=100.65  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447           26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE   98 (150)
Q Consensus        26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~   98 (150)
                      +++++|.++.+|.       ++|++++|. ...+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus        49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           49 ITLANINVTDLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             EEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             EeccCCCccChHHHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            7778888877665       889999973 3333 468889999999999999988777788999999999999999984


Q ss_pred             -cchhhcCCCCCCEEEccCCc-CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           99 -VPESLGQLSSLKILVLTNNG-LKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        99 -l~~~~~~~~~L~~l~l~~n~-i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                       .+..+..+++|+++++++|. ++.+| .+..+++|+.|++++|.++.++
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence             66788899999999999998 88887 6889999999999999998776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=1.4e-15  Score=98.17  Aligned_cols=106  Identities=24%  Similarity=0.354  Sum_probs=80.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n  117 (150)
                      +.++++++ .++.+|..+.  +++++|++++|.+.+..|..|..+++|+.|++++|.++.+|+. +..+++|++|++++|
T Consensus        15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            35666663 4466665543  6788888888888877777788888888888888888877764 477888888888888


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .|+.+|.. +..+++|+++++++|++...+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88887665 7778888888888888775543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=6.9e-16  Score=98.86  Aligned_cols=107  Identities=27%  Similarity=0.320  Sum_probs=94.9

Q ss_pred             cceecccccCC-CcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc-cchhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSL-QSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE-VPESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.. +|..+..+++|+++++++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  104 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG  104 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence            68899998765 57888788999999999999998776  678899999999999999996 676777899999999999


Q ss_pred             CcCcccC--ccccCCCCCCEEEccCCCCCCCCC
Q 047447          117 NGLKRLP--ESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       117 n~i~~lp--~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.+++++  ..+..+++|+++++++|.+..+|.
T Consensus       105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            9999976  678999999999999999987775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=7.2e-16  Score=109.53  Aligned_cols=70  Identities=24%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             hhcCcC-cCceEEecCCCCCccchhhcCCCCCCEEEccC-CcCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447           79 ELGNLK-ALETLIVDGTLIREVPESLGQLSSLKILVLTN-NGLKRLPES-LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        79 ~~~~l~-~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~-n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      .|..+. .++.+++++|.++.+++......+++.+.+.+ |.++.+|.. +..+++|+.|++++|+++.+|..
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            344443 47778888888888877666667788888875 558888754 78889999999999999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.8e-15  Score=114.41  Aligned_cols=139  Identities=27%  Similarity=0.286  Sum_probs=114.4

Q ss_pred             CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      ++.|++|++++|.+. .+|..     +..|++++|.+..++.       +.|++++|.+. .++ .+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCC-CCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCC-CChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecC
Confidence            578999999998754 34431     1228899999887765       88999997654 444 688999999999999


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.+.+.  +.+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+|.
T Consensus       119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          119 NGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA  192 (605)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH
Confidence            988774  4588999999999999999987 577899999999999999999655 8899999999999999987753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=117.93  Aligned_cols=147  Identities=21%  Similarity=0.167  Sum_probs=116.6

Q ss_pred             CCCCCcEEecccCCCccccc-cCCcc------ccCCCcCcccccc---------cceecccccCCCcCccc--ccCCCCc
Q 047447            1 MLKSLQSIEISNCSILKRFL-EIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSS--LCMFKSL   62 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p-~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~--~~~l~~L   62 (150)
                      ++++|++|+|++|...+.++ ..+..      +++++|.+..+..         ++|++++|.+.+..+..  +..+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            36788888888886666663 33333      8899999887633         88999998877766654  8899999


Q ss_pred             cEEEeecCcccCCCc-hhhcCcCcCceEEecCCCCCcc-chhhcCC--CCCCEEEccCCcCcc-cCccccCCCC------
Q 047447           63 TSLEIIDCQNFKILP-YELGNLKALETLIVDGTLIREV-PESLGQL--SSLKILVLTNNGLKR-LPESLNQLSS------  131 (150)
Q Consensus        63 ~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~--~~L~~l~l~~n~i~~-lp~~~~~~~~------  131 (150)
                      ++|++++|.+.+..+ ..|..+++|+.|++++|.++.. +..+..+  ++|+.++++.|.+.+ .|..+..+++      
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            999999999988765 6789999999999999998854 5566555  789999999999887 6666666554      


Q ss_pred             CCEEEccCCCCC-CCCC
Q 047447          132 LKRLVLSDNPLK-ILPK  147 (150)
Q Consensus       132 L~~l~l~~n~l~-~~p~  147 (150)
                      |+.+++++|.+. .+|.
T Consensus       206 L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITG  222 (844)
T ss_dssp             BSEEBCSSCCSSTTTTS
T ss_pred             eeEEecCCCcCchhHHH
Confidence            999999999876 4443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=1.1e-14  Score=106.81  Aligned_cols=99  Identities=23%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|...+.+  .+..+++|++|++++|.+.+. |  +..+++|+.+++++|.++.++  ++.+++|+++++++|.
T Consensus       151 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          151 TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred             CEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc
Confidence            44455554344433  245566666666666665553 2  556666777777777666552  5567777777777777


Q ss_pred             CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447          119 LKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       119 i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      ++++|  +..+++|+.+++++|.++.+|
T Consensus       224 l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          224 LTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            77766  667777777777777776555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=3.4e-15  Score=96.02  Aligned_cols=102  Identities=27%  Similarity=0.387  Sum_probs=68.6

Q ss_pred             ceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCc
Q 047447           40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNG  118 (150)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~  118 (150)
                      +++++++ .++.+|..+  .+++++|++++|.+.+..|..|..+++|+.|++++|.++.+++ .+..+++|+++++++|.
T Consensus        13 ~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4566663 344455443  2667777777777777666667777777777777777776665 34677777777777777


Q ss_pred             CcccCcc-ccCCCCCCEEEccCCCCCC
Q 047447          119 LKRLPES-LNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       119 i~~lp~~-~~~~~~L~~l~l~~n~l~~  144 (150)
                      ++.++.. +..+++|+++++++|++..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7776543 6677777777777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=8.3e-15  Score=107.46  Aligned_cols=135  Identities=24%  Similarity=0.321  Sum_probs=103.6

Q ss_pred             CCcEEecccCCCcc--ccccCCccccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccCCC
Q 047447            4 SLQSIEISNCSILK--RFLEIPSCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKIL   76 (150)
Q Consensus         4 ~L~~L~l~~~~~~~--~~p~~~~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   76 (150)
                      .+++|++++|.+.+  .+|.....+++++|.++.+|.     ++|++++|.+. .++..   .++|++|++++|.+.+ +
T Consensus        72 ~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~-l  146 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-L  146 (454)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-C
T ss_pred             CCCEEEecCCccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCC-C
Confidence            46788888877554  334444448888888887765     77888886443 33321   2689999999998887 6


Q ss_pred             chhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447           77 PYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus        77 ~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      | .+..+++|+.+++++|.++.+|...   .+|+++++++|.++++| .++.+++|+++++++|.+..+|..
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC
Confidence            6 5889999999999999998877543   48999999999999988 588889999999999988877653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=8e-15  Score=111.15  Aligned_cols=35  Identities=49%  Similarity=0.571  Sum_probs=15.2

Q ss_pred             CCCEEEccCCcCcccCccccCCCCCCEEEccCCCC
Q 047447          108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL  142 (150)
Q Consensus       108 ~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l  142 (150)
                      +|+.|++++|.++.+|..+..+++|+.+++++|++
T Consensus       262 ~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             cCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            34444444444444444444444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=9.7e-15  Score=110.70  Aligned_cols=61  Identities=36%  Similarity=0.444  Sum_probs=52.3

Q ss_pred             cCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447           83 LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL  149 (150)
Q Consensus        83 l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~  149 (150)
                      +++|+.|++++|.++.+|   ..+++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|..+
T Consensus       220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l  280 (622)
T 3g06_A          220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL  280 (622)
T ss_dssp             CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred             CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence            367889999999888877   456789999999999999887   6688999999999999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.61  E-value=2.5e-14  Score=105.06  Aligned_cols=135  Identities=21%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             CCCCcEEecccCCCccccccC----CccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447            2 LKSLQSIEISNCSILKRFLEI----PSCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ   71 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~----~~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   71 (150)
                      ++.|++|++++|.+.+ +|-.    +..+++++|.++.++-      ++|++++|.+.+ ++  +..+++|++|++++|.
T Consensus        63 l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred             cCCCCEEEccCCcCCe-EccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence            4566666666665443 2211    1115555555554322      555565544332 22  4455555555555555


Q ss_pred             ccC---------------------CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCC
Q 047447           72 NFK---------------------ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLS  130 (150)
Q Consensus        72 ~~~---------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~  130 (150)
                      +.+                     .+  .+..+++|+.+++++|.++.+|  +..+++|+.+++++|.+++++  +..++
T Consensus       139 l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~  212 (457)
T 3bz5_A          139 LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNI  212 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCC
Confidence            444                     32  2445566666666666666654  556667777777777777653  66777


Q ss_pred             CCCEEEccCCCCCCCC
Q 047447          131 SLKRLVLSDNPLKILP  146 (150)
Q Consensus       131 ~L~~l~l~~n~l~~~p  146 (150)
                      +|+.+++++|+++.+|
T Consensus       213 ~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          213 QLTFLDCSSNKLTEID  228 (457)
T ss_dssp             TCSEEECCSSCCSCCC
T ss_pred             CCCEEECcCCcccccC
Confidence            7888888888877766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=5.4e-15  Score=96.83  Aligned_cols=110  Identities=20%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             CCCcEEecccCCCccccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc
Q 047447            3 KSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG   81 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   81 (150)
                      +.|++|++++|.+.+..+...         +..++. ++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   99 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGL---------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCS---------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             CCCCEEECCCCcCCccCCccc---------cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence            368888998887654322211         222333 6899999887777788899999999999999999998888889


Q ss_pred             CcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcc
Q 047447           82 NLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        82 ~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~  121 (150)
                      .+++|+.|++++|.++.+ |..+..+++|+++++++|.++.
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            999999999999999965 5577889999999999999774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=8.8e-15  Score=95.95  Aligned_cols=114  Identities=22%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             cEEecccCCCccccccCCcc----ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCccc
Q 047447            6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNF   73 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   73 (150)
                      ++++++++.+ +.+|..+..    +++++|.++.+|.        ++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus        13 ~~l~~~~~~l-~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGL-KVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCC-SSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCC-CcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            5788888764 456654433    8899999888775        88999998777666677999999999999999999


Q ss_pred             CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCc
Q 047447           74 KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK  120 (150)
Q Consensus        74 ~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~  120 (150)
                      +..+..|..+++|+.|++++|.++.+++ .+..+++|+.+++++|.+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            9888889999999999999999998887 5788999999999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=4.6e-15  Score=101.65  Aligned_cols=134  Identities=23%  Similarity=0.221  Sum_probs=104.4

Q ss_pred             CCcEEecccCCCccccc-----cCCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447            4 SLQSIEISNCSILKRFL-----EIPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ   71 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p-----~~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   71 (150)
                      .+..++++++.+. +++     ..+..+++++|.++.++.       ++|++++|.+. .++. +..+++|++|++++|.
T Consensus        20 ~l~~l~l~~~~i~-~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTT-SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCcc-cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCc
Confidence            4556677776644 333     122238888888887765       88999997554 4444 8899999999999998


Q ss_pred             ccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCC
Q 047447           72 NFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus        72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      +.+..+  +.. ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.++.+
T Consensus        97 l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           97 LKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             cCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            877432  233 88999999999998875 5788999999999999999986 688899999999999999866

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=6.4e-15  Score=113.52  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             CcEEecccCCCccccccCC-ccccCCCcCcccccccceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCc
Q 047447            5 LQSIEISNCSILKRFLEIP-SCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNL   83 (150)
Q Consensus         5 L~~L~l~~~~~~~~~p~~~-~~l~l~~~~l~~l~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l   83 (150)
                      ++.|+|..+.+... +... ..++++.+.|.     .+++..+ .....+..+..+..|+.|++++|.+. .+|..+..+
T Consensus       175 ~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~-----~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l  246 (727)
T 4b8c_D          175 TPKIELFANGKDEA-NQALLQHKKLSQYSID-----EDDDIEN-RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred             cceEEeeCCCCCcc-hhhHhhcCccCccccc-----Ccccccc-ceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence            45556655544332 2222 22555555554     3344443 33355677889999999999999877 566666799


Q ss_pred             CcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447           84 KALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN  150 (150)
Q Consensus        84 ~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~  150 (150)
                      ++|+.|++++|.++.+|..++.+++|++|++++|.|+.+|..++.+++|++|++++|.++.+|..|+
T Consensus       247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~  313 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG  313 (727)
T ss_dssp             CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTT
T ss_pred             CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.1e-15  Score=114.88  Aligned_cols=96  Identities=21%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~  116 (150)
                      +.|++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+  |..++.+++|+.+++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            78999997655 889999999999999999999887 56 789999999999999999977  78899999999999999


Q ss_pred             CcCcccCccc----cCCCCCCEEEc
Q 047447          117 NGLKRLPESL----NQLSSLKRLVL  137 (150)
Q Consensus       117 n~i~~lp~~~----~~~~~L~~l~l  137 (150)
                      |.++++|...    ..+++|+.|++
T Consensus       543 N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          543 NSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CcCCCCccHHHHHHHHCcccCccCC
Confidence            9999976543    34788998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.5e-14  Score=93.37  Aligned_cols=105  Identities=28%  Similarity=0.316  Sum_probs=89.7

Q ss_pred             cceecccccCCCcCcccccCCC-CccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFK-SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~  116 (150)
                      ++|++++|.+. .++. +..+. +|++|++++|.+.+.  +.+..+++|+.+++++|.++.+|+.+ ..+++|+++++++
T Consensus        22 ~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           22 RELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             EEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             eEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            67899997554 4554 44544 999999999998876  56889999999999999999887644 8899999999999


Q ss_pred             CcCcccCc--cccCCCCCCEEEccCCCCCCCCC
Q 047447          117 NGLKRLPE--SLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       117 n~i~~lp~--~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.++.+|.  .+..+++|+.+++++|++..+|.
T Consensus        98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            99998887  78999999999999999987775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.8e-13  Score=88.23  Aligned_cols=107  Identities=28%  Similarity=0.413  Sum_probs=89.4

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      +.++++++ ..+.+|..+  .+++++|++++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus        10 ~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            35666664 345566433  3689999999999887777778899999999999999998876 4689999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447          118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      .++.++.. +..+++|+++++++|.++.+|..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            99997654 78899999999999999988874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=5.1e-15  Score=106.26  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=101.8

Q ss_pred             CCCCcEEecccCCCccc----cc---------------cCCccccCCCcCcc--ccc----------c-cceecccccCC
Q 047447            2 LKSLQSIEISNCSILKR----FL---------------EIPSCNIDGGIGIE--RLA----------S-CKLVLEKCLSL   49 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~----~p---------------~~~~~l~l~~~~l~--~l~----------~-~~L~l~~~~~~   49 (150)
                      ++.|++|+|++|.+...    ++               ..+..+++++|.++  .++          . ++|++++|.+.
T Consensus       121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            56777777777766422    22               23344777777775  233          1 77888887554


Q ss_pred             C-----cCcccccCCCCccEEEeecCccc----CCCchhhcCcCcCceEEecCCCCCc-----cchhh--cCCCCCCEEE
Q 047447           50 Q-----SLPSSLCMFKSLTSLEIIDCQNF----KILPYELGNLKALETLIVDGTLIRE-----VPESL--GQLSSLKILV  113 (150)
Q Consensus        50 ~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~--~~~~~L~~l~  113 (150)
                      .     ..+..+..+++|++|++++|.+.    ..+|..+..+++|+.|++++|.++.     ++..+  +.+++|++|+
T Consensus       201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~  280 (386)
T 2ca6_A          201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  280 (386)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence            2     23336677888888888888875    5567777888888999998888873     35555  3488899999


Q ss_pred             ccCCcCcc-----cCccc-cCCCCCCEEEccCCCCCCC
Q 047447          114 LTNNGLKR-----LPESL-NQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus       114 l~~n~i~~-----lp~~~-~~~~~L~~l~l~~n~l~~~  145 (150)
                      +++|.++.     +|..+ .++++|++|++++|.+...
T Consensus       281 L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            99988887     77776 5678899999999888743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=8.2e-14  Score=89.89  Aligned_cols=86  Identities=19%  Similarity=0.161  Sum_probs=75.6

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++. +..+++|+++++++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            6899999877766678889999999999999998887777788999999999999999988874 789999999999999


Q ss_pred             cCcccCc
Q 047447          118 GLKRLPE  124 (150)
Q Consensus       118 ~i~~lp~  124 (150)
                      .+...+.
T Consensus       116 ~~~c~~~  122 (174)
T 2r9u_A          116 PWDCECR  122 (174)
T ss_dssp             CBCTTBG
T ss_pred             Ccccccc
Confidence            9886543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=7.1e-14  Score=89.83  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|.+.+..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus        33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            688999987777767889999999999999999998877788999999999999999998877 5789999999999999


Q ss_pred             cCcc
Q 047447          118 GLKR  121 (150)
Q Consensus       118 ~i~~  121 (150)
                      .++.
T Consensus       113 ~~~c  116 (170)
T 3g39_A          113 PWDC  116 (170)
T ss_dssp             CBCT
T ss_pred             CCCC
Confidence            8764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=3.5e-15  Score=105.07  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             cceecccccCCC--cCcccccCCCCccEEEeecC-cccCC-CchhhcCcC-cCceEEecCCC--CC--ccchhhcCCCCC
Q 047447           39 CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDC-QNFKI-LPYELGNLK-ALETLIVDGTL--IR--EVPESLGQLSSL  109 (150)
Q Consensus        39 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~~n~--l~--~l~~~~~~~~~L  109 (150)
                      ++|++++|...+  .++..+..+++|++|++++| .+.+. ++..+..++ +|+.|++++|.  ++  .++..+..+++|
T Consensus       145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L  224 (336)
T 2ast_B          145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  224 (336)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence            555555552222  23444455555666666555 44432 334445555 56666665552  32  334444555566


Q ss_pred             CEEEccCCc-Ccc-cCccccCCCCCCEEEccCC
Q 047447          110 KILVLTNNG-LKR-LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       110 ~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l~~n  140 (150)
                      +++++++|. +++ .+..+..+++|++|++++|
T Consensus       225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            666666655 443 4444555555666666555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=5.4e-15  Score=106.12  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=15.9

Q ss_pred             cCCCCCCEEEccCCcCc-----ccCccccCCCCCCEEEccCCCC
Q 047447          104 GQLSSLKILVLTNNGLK-----RLPESLNQLSSLKRLVLSDNPL  142 (150)
Q Consensus       104 ~~~~~L~~l~l~~n~i~-----~lp~~~~~~~~L~~l~l~~n~l  142 (150)
                      ..+++|+.|++++|.++     .+|..+..+++|++|++++|.+
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            33444444444444442     1333334444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.49  E-value=6.2e-15  Score=103.77  Aligned_cols=141  Identities=21%  Similarity=0.185  Sum_probs=103.2

Q ss_pred             CCCcEEecccCCCccccccCCc-----cccCCCcCccc--ccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            3 KSLQSIEISNCSILKRFLEIPS-----CNIDGGIGIER--LAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~~-----~l~l~~~~l~~--l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      +.+++|++++|.+.+..+....     .+++++|.+..  ++.        ++|++++|.+....+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            5677777777765554443221     16777776652  332        78888888766677777888899999999


Q ss_pred             ecC-cccC-CCchhhcCcCcCceEEecCC-CCCc--cchhhcCCC-CCCEEEccCC--cCcc--cCccccCCCCCCEEEc
Q 047447           68 IDC-QNFK-ILPYELGNLKALETLIVDGT-LIRE--VPESLGQLS-SLKILVLTNN--GLKR--LPESLNQLSSLKRLVL  137 (150)
Q Consensus        68 ~~~-~~~~-~~~~~~~~l~~L~~l~l~~n-~l~~--l~~~~~~~~-~L~~l~l~~n--~i~~--lp~~~~~~~~L~~l~l  137 (150)
                      ++| .+.+ .++..+..+++|+.|++++| .++.  ++..+..++ +|++|++++|  .+++  ++..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            988 4554 25666778889999999998 8873  566677888 8999999998  4553  6777788899999999


Q ss_pred             cCCC-CC
Q 047447          138 SDNP-LK  143 (150)
Q Consensus       138 ~~n~-l~  143 (150)
                      ++|. ++
T Consensus       230 ~~~~~l~  236 (336)
T 2ast_B          230 SDSVMLK  236 (336)
T ss_dssp             TTCTTCC
T ss_pred             CCCCcCC
Confidence            9988 54

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.49  E-value=3e-13  Score=95.75  Aligned_cols=102  Identities=30%  Similarity=0.255  Sum_probs=74.0

Q ss_pred             ceecccccCCCcCcccccCCCCccEEEeec-CcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIID-CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      .++.++++.+..+|. +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            446666435566777 77777888888875 77777766777788888888888888876654 5677888888888888


Q ss_pred             cCcccCccc-cCCCCCCEEEccCCCCC
Q 047447          118 GLKRLPESL-NQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       118 ~i~~lp~~~-~~~~~L~~l~l~~n~l~  143 (150)
                      .++.+|..+ ..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            888876553 3344 888888888775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=4.8e-14  Score=100.51  Aligned_cols=84  Identities=21%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             CccEEEeecCcccCCC----chhhcCcC-cCceEEecCCCCCccc-h----hhcCC-CCCCEEEccCCcCcc-----cCc
Q 047447           61 SLTSLEIIDCQNFKIL----PYELGNLK-ALETLIVDGTLIREVP-E----SLGQL-SSLKILVLTNNGLKR-----LPE  124 (150)
Q Consensus        61 ~L~~L~l~~~~~~~~~----~~~~~~l~-~L~~l~l~~n~l~~l~-~----~~~~~-~~L~~l~l~~n~i~~-----lp~  124 (150)
                      +|++|++++|.+....    +..+..++ +|+.|++++|.++... .    .+..+ ++|++|++++|.+++     ++.
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            5555555555444322    22223333 5555555555554221 1    22233 355555555555554     333


Q ss_pred             cccC-CCCCCEEEccCCCCCC
Q 047447          125 SLNQ-LSSLKRLVLSDNPLKI  144 (150)
Q Consensus       125 ~~~~-~~~L~~l~l~~n~l~~  144 (150)
                      .+.. .++|++|++++|.+..
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCCceEEECcCCCCCc
Confidence            3333 2356666666665553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.1e-15  Score=100.49  Aligned_cols=116  Identities=22%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             CCCcEEecccCCCcccccc------CC------ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCcc
Q 047447            3 KSLQSIEISNCSILKRFLE------IP------SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLT   63 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~------~~------~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~   63 (150)
                      +.++.++++.+.+.+.+|.      .+      ..+++++|.++.+|.       ++|++++|.+. .+|..+..+++|+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            4556666666665555443      11      114444444444333       45555554332 4444444455555


Q ss_pred             EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc
Q 047447           64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~  121 (150)
                      +|++++|.+.+ +| .+..+++|+.+++++|.++.++.  .+..+++|+++++++|.+.+
T Consensus        97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            55665555444 22 34555555666665555554433  44555556666665555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=1.2e-13  Score=98.53  Aligned_cols=142  Identities=18%  Similarity=0.137  Sum_probs=102.8

Q ss_pred             CCCcEEecccCCCccccc-----------cCCccccCCCcCcccc-------------cc-cceecccccCCCcCccc--
Q 047447            3 KSLQSIEISNCSILKRFL-----------EIPSCNIDGGIGIERL-------------AS-CKLVLEKCLSLQSLPSS--   55 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p-----------~~~~~l~l~~~~l~~l-------------~~-~~L~l~~~~~~~~~~~~--   55 (150)
                      +.|++|+|++|.+.+..+           ..+..+++++|.++..             +. ++|++++|.+....+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            359999999988655322           1344488888888753             22 78999998765555443  


Q ss_pred             --ccCC-CCccEEEeecCcccCCCchhhc----C-cCcCceEEecCCCCC-----ccchhhcCCC-CCCEEEccCCcCcc
Q 047447           56 --LCMF-KSLTSLEIIDCQNFKILPYELG----N-LKALETLIVDGTLIR-----EVPESLGQLS-SLKILVLTNNGLKR  121 (150)
Q Consensus        56 --~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~l~l~~n~l~-----~l~~~~~~~~-~L~~l~l~~n~i~~  121 (150)
                        +..+ ++|++|++++|.+.+..+..+.    . ..+|+.|++++|.++     .++..+...+ +|++|++++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3444 7999999999998777665433    3 358999999999887     3344555665 89999999999887


Q ss_pred             cC-c----cccCC-CCCCEEEccCCCCCC
Q 047447          122 LP-E----SLNQL-SSLKRLVLSDNPLKI  144 (150)
Q Consensus       122 lp-~----~~~~~-~~L~~l~l~~n~l~~  144 (150)
                      .. .    .+... ++|++|++++|.+..
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            43 2    34455 589999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=1.7e-12  Score=92.12  Aligned_cols=95  Identities=23%  Similarity=0.199  Sum_probs=49.2

Q ss_pred             cccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecC-CCCCccch-hhcCC-CCCCEEEccCCcCcccCccccCC
Q 047447           53 PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG-TLIREVPE-SLGQL-SSLKILVLTNNGLKRLPESLNQL  129 (150)
Q Consensus        53 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~-~~~~~-~~L~~l~l~~n~i~~lp~~~~~~  129 (150)
                      |..|..+++|++|++++|.+....+..+.....+..+++.+ +.+..++. .+..+ ..++.+++++|.|+.++......
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~  176 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG  176 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence            34445555555555555554444433333444444555433 24444443 22222 24556666666666666555455


Q ss_pred             CCCCEEEcc-CCCCCCCCC
Q 047447          130 SSLKRLVLS-DNPLKILPK  147 (150)
Q Consensus       130 ~~L~~l~l~-~n~l~~~p~  147 (150)
                      .+++.+++. +|.++.+|.
T Consensus       177 ~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCT
T ss_pred             cchhHHhhccCCcccCCCH
Confidence            566666665 356666665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=7.5e-14  Score=102.01  Aligned_cols=84  Identities=26%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             CCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCcc-chh----hc-CCCCCCEEEccCCcCc-----ccCc
Q 047447           60 KSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREV-PES----LG-QLSSLKILVLTNNGLK-----RLPE  124 (150)
Q Consensus        60 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~l-~~~----~~-~~~~L~~l~l~~n~i~-----~lp~  124 (150)
                      ++|++|++++|.+.+.    ++..+..+++|+.+++++|.++.. +..    +. ..++|+++++++|.++     .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3555555555555443    334445567777777777766532 222    22 2567777777777777     3566


Q ss_pred             cccCCCCCCEEEccCCCCC
Q 047447          125 SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       125 ~~~~~~~L~~l~l~~n~l~  143 (150)
                      .+..+++|+++++++|++.
T Consensus       393 ~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHHhCCCccEEECCCCCCC
Confidence            6677777888888887765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.35  E-value=3.3e-13  Score=98.57  Aligned_cols=13  Identities=23%  Similarity=0.733  Sum_probs=6.4

Q ss_pred             CCcEEecccCCCc
Q 047447            4 SLQSIEISNCSIL   16 (150)
Q Consensus         4 ~L~~L~l~~~~~~   16 (150)
                      +|++|++++|.+.
T Consensus        86 ~L~~L~L~~n~i~   98 (461)
T 1z7x_W           86 KIQKLSLQNCCLT   98 (461)
T ss_dssp             CCCEEECTTSCCB
T ss_pred             ceeEEEccCCCCC
Confidence            3555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=1e-14  Score=95.87  Aligned_cols=101  Identities=24%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+| .+..+++|+++++++|.
T Consensus        51 ~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred             CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc
Confidence            889999976544 66 7888999999999998877 46666777889999999999998876 57788899999999999


Q ss_pred             CcccCc--cccCCCCCCEEEccCCCCC
Q 047447          119 LKRLPE--SLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       119 i~~lp~--~~~~~~~L~~l~l~~n~l~  143 (150)
                      ++.++.  .+..+++|+++++++|++.
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccc
Confidence            998654  6888999999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1e-12  Score=94.22  Aligned_cols=141  Identities=17%  Similarity=0.065  Sum_probs=102.0

Q ss_pred             CCCcEEecccCCCcccc-----------ccCCccccCCCcCcccc---------cc-cceecccccCCCcCcccc-----
Q 047447            3 KSLQSIEISNCSILKRF-----------LEIPSCNIDGGIGIERL---------AS-CKLVLEKCLSLQSLPSSL-----   56 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~-----------p~~~~~l~l~~~~l~~l---------~~-~~L~l~~~~~~~~~~~~~-----   56 (150)
                      +.|++|+|++|.+....           +..+..+++++|.++..         +. +.|++++|.+...-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            57889999998865421           12333488888887631         11 789999986644322222     


Q ss_pred             cCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc-----c
Q 047447           57 CMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR-----L  122 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~-----l  122 (150)
                      ...++|++|++++|.+...    ++..+...++|+.|++++|.++.     +...+...++|+.|++++|.|++     +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2467899999999987653    34455778899999999998873     34566778899999999999985     3


Q ss_pred             CccccCCCCCCEEEccCCCCC
Q 047447          123 PESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       123 p~~~~~~~~L~~l~l~~n~l~  143 (150)
                      +..+...++|++|++++|.|.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            344566788999999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=2.7e-11  Score=85.68  Aligned_cols=83  Identities=20%  Similarity=0.089  Sum_probs=69.3

Q ss_pred             cceeccc-ccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEK-CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++ |.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+|+.......|+.|++.+|
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence            5889986 555445557789999999999999999998888899999999999999999988875433334999999999


Q ss_pred             cCcc
Q 047447          118 GLKR  121 (150)
Q Consensus       118 ~i~~  121 (150)
                      .+..
T Consensus       114 ~~~c  117 (347)
T 2ifg_A          114 PLHC  117 (347)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            9873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=9.6e-10  Score=77.30  Aligned_cols=87  Identities=14%  Similarity=0.242  Sum_probs=73.3

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCC-EEEccCCcCcccC-ccccCCCCCCEE
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLK-ILVLTNNGLKRLP-ESLNQLSSLKRL  135 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~-~l~l~~n~i~~lp-~~~~~~~~L~~l  135 (150)
                      +++|+.+++++|.+....+..|.++.+|+.+++.+| +..+++ ++..+.+|+ .+.+.+ .++.++ ..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            778999999988877776778999999999999887 777765 678999999 999987 777765 568899999999


Q ss_pred             EccCCCCCCCCC
Q 047447          136 VLSDNPLKILPK  147 (150)
Q Consensus       136 ~l~~n~l~~~p~  147 (150)
                      ++.+|.++.++.
T Consensus       303 ~l~~n~i~~I~~  314 (329)
T 3sb4_A          303 LATGDKITTLGD  314 (329)
T ss_dssp             EECSSCCCEECT
T ss_pred             EeCCCccCccch
Confidence            999998887766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.01  E-value=3.8e-10  Score=84.74  Aligned_cols=62  Identities=18%  Similarity=0.147  Sum_probs=35.6

Q ss_pred             CchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEcc
Q 047447           76 LPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLS  138 (150)
Q Consensus        76 ~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~  138 (150)
                      +|..+..+++|+.|++++|.++.  +...+..+++|+.|+++ +.+.+  ++.....+++|++|+++
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            34445556667777777666542  22334666677777766 33333  33334556777777777

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.99  E-value=1.8e-10  Score=86.51  Aligned_cols=77  Identities=18%  Similarity=0.038  Sum_probs=38.9

Q ss_pred             cceecccccCCCc----CcccccCCCCccEEEeecCcccC----CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCC
Q 047447           39 CKLVLEKCLSLQS----LPSSLCMFKSLTSLEIIDCQNFK----ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLK  110 (150)
Q Consensus        39 ~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~  110 (150)
                      ++|++++|.+...    ++.....+++|++|++++|.+.+    .++..+..+++|+.|++++|.+..++..+..+++|+
T Consensus       167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~  246 (592)
T 3ogk_B          167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE  246 (592)
T ss_dssp             SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred             CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence            5566666543322    22223345566666666655542    222333455666666666665555444444455555


Q ss_pred             EEEcc
Q 047447          111 ILVLT  115 (150)
Q Consensus       111 ~l~l~  115 (150)
                      +++++
T Consensus       247 ~L~l~  251 (592)
T 3ogk_B          247 EFCGG  251 (592)
T ss_dssp             EEEEC
T ss_pred             hhccc
Confidence            55544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=6.3e-09  Score=73.12  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCc-eEEecCCCCCccch-hhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALE-TLIVDGTLIREVPE-SLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~  116 (150)
                      +.+++++|++...-...|.++.+|+.+++.+| +....+..|.++.+|+ .+++.+ .++.+++ ++..|++|+.+++..
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence            56777775544333456889999999999986 6655567899999999 999988 7777764 789999999999999


Q ss_pred             CcCcccCc-cccCCCCCCEEEc
Q 047447          117 NGLKRLPE-SLNQLSSLKRLVL  137 (150)
Q Consensus       117 n~i~~lp~-~~~~~~~L~~l~l  137 (150)
                      +.++.++. .|.++++|+.++.
T Consensus       307 n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          307 DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             SCCCEECTTTTCTTCCCCEEEC
T ss_pred             CccCccchhhhcCCcchhhhcc
Confidence            99999765 5899999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=2.1e-10  Score=82.16  Aligned_cols=119  Identities=18%  Similarity=0.089  Sum_probs=89.4

Q ss_pred             CCCcEEecccCCCccccccCC-------ccccCCCcCcccc-------------cc-cceecccccCCC----cCccccc
Q 047447            3 KSLQSIEISNCSILKRFLEIP-------SCNIDGGIGIERL-------------AS-CKLVLEKCLSLQ----SLPSSLC   57 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~~~-------~~l~l~~~~l~~l-------------~~-~~L~l~~~~~~~----~~~~~~~   57 (150)
                      +.|++|+|++|.+.......+       ..+++++|.++..             +. ++|++++|.+..    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            589999999998755322222       2288999988631             11 789999986543    3445557


Q ss_pred             CCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc
Q 047447           58 MFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~  121 (150)
                      ..++|++|++++|.+...    ++..+...++|+.|++++|.++.     +...+...++|+++++++|.|++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            789999999999987653    34556778899999999999973     34456678899999999999986

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.71  E-value=3.7e-07  Score=66.02  Aligned_cols=92  Identities=15%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             cccccCCCCccEEEeecCccc-----CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-cc
Q 047447           53 PSSLCMFKSLTSLEIIDCQNF-----KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ES  125 (150)
Q Consensus        53 ~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~  125 (150)
                      ...|.++++|+.+++.++...     ...+..|.++++|+.+.+.+ .++.+.. ++..|.+|+.+.+..+ ++.+. ..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            345667788888888775543     23345677888888888874 4666654 6678888888888544 66654 45


Q ss_pred             ccCCCCCCEEEccCCCCCCCCC
Q 047447          126 LNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       126 ~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |.++ +|+.+++.+|.+..++.
T Consensus       342 F~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             SSSS-CCCEEEECCSSCCBCCC
T ss_pred             CCCC-CCCEEEEcCCCCccccc
Confidence            7777 89999998887766554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.71  E-value=3.4e-09  Score=79.58  Aligned_cols=17  Identities=12%  Similarity=0.270  Sum_probs=12.7

Q ss_pred             CCCCcEEecccCCCccc
Q 047447            2 LKSLQSIEISNCSILKR   18 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~   18 (150)
                      ++.|++|++++|....+
T Consensus        65 ~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             CTTCCEEEEECSCGGGG
T ss_pred             CCCceEEeccCCCchhh
Confidence            67889999988765543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=1.1e-08  Score=66.30  Aligned_cols=105  Identities=16%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             cceecccc-cCCC----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKC-LSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      ++|++++| .+..    .+...+...++|++|++++|.+...    +.+.+...++|+.|++++|.++.     +...+.
T Consensus        39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~  118 (185)
T 1io0_A           39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ  118 (185)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred             CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence            57788886 4432    2344556678899999999887543    33445556789999999998873     455667


Q ss_pred             CCCCCCEEEc--cCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447          105 QLSSLKILVL--TNNGLKR-----LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       105 ~~~~L~~l~l--~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ..++|++|++  ++|.|+.     +...+...++|++|++++|.+.
T Consensus       119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            7888999999  8888886     3445566788999999988763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.61  E-value=8.4e-09  Score=77.46  Aligned_cols=37  Identities=30%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             cCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCC
Q 047447          104 GQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       104 ~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n  140 (150)
                      ..+++|++|++++|.+++  ++..+..+++|+.|++++|
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            355667777777776554  2333456677777777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=9.4e-08  Score=65.42  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             cCCCCccEEEeecCcccC--CCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc-cCc-------
Q 047447           57 CMFKSLTSLEIIDCQNFK--ILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR-LPE-------  124 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~-lp~-------  124 (150)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|++++|.++.+..  .+..+ .|++|++.+|++.+ +|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            357888889999888877  345666788888999999888886532  23333 88888888888876 542       


Q ss_pred             cccCCCCCCEEE
Q 047447          125 SLNQLSSLKRLV  136 (150)
Q Consensus       125 ~~~~~~~L~~l~  136 (150)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            256678888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.48  E-value=2.1e-07  Score=66.44  Aligned_cols=105  Identities=15%  Similarity=0.070  Sum_probs=60.5

Q ss_pred             cceecccccCCCcCccccc--CCCCccEEEeecC--cccCC-----Cchhh--cCcCcCceEEecCCCCCc-cchhh---
Q 047447           39 CKLVLEKCLSLQSLPSSLC--MFKSLTSLEIIDC--QNFKI-----LPYEL--GNLKALETLIVDGTLIRE-VPESL---  103 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~~~~~-----~~~~~--~~l~~L~~l~l~~n~l~~-l~~~~---  103 (150)
                      +.|++..|.+.......+.  .+++|++|+++.+  ...+.     +...+  ..+++|+.|++.+|.+.. .+..+   
T Consensus       196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a  275 (362)
T 2ra8_A          196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES  275 (362)
T ss_dssp             SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred             cEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence            5666665543322222222  5778888877532  11111     11112  246778888888877652 22222   


Q ss_pred             cCCCCCCEEEccCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447          104 GQLSSLKILVLTNNGLKR-----LPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       104 ~~~~~L~~l~l~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ..+++|+.|+++.|.+++     ++..+..+++|+.|++++|.+.
T Consensus       276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            356778888888887776     3344456678888888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=4.3e-07  Score=58.31  Aligned_cols=80  Identities=23%  Similarity=0.241  Sum_probs=34.2

Q ss_pred             CccEEEeecCcccCCCchhhcCcCcCceEEecCCC-CCc-cchhhcCC----CCCCEEEccCCc-Ccc-cCccccCCCCC
Q 047447           61 SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IRE-VPESLGQL----SSLKILVLTNNG-LKR-LPESLNQLSSL  132 (150)
Q Consensus        61 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~-l~~~~~~~----~~L~~l~l~~n~-i~~-lp~~~~~~~~L  132 (150)
                      .|+.||+++|.++..--..+..+++|+.|++++|. ++. --..+..+    ++|++|++++|. |++ --..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34555555554433322333445555555555552 331 11222221    245555555543 444 11223444555


Q ss_pred             CEEEccCC
Q 047447          133 KRLVLSDN  140 (150)
Q Consensus       133 ~~l~l~~n  140 (150)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=3e-07  Score=59.57  Aligned_cols=91  Identities=20%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             cccccCCCCccEEEeecC-cccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc-
Q 047447           53 PSSLCMFKSLTSLEIIDC-QNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR-  121 (150)
Q Consensus        53 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~-  121 (150)
                      ...+...+.|++|++++| .+...    +...+...++|+.|++++|.++.     +...+...++|++|++++|.|++ 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344567889999999998 66543    34456677899999999999873     34556677899999999999986 


Q ss_pred             ----cCccccCCCCCCEEEc--cCCCCC
Q 047447          122 ----LPESLNQLSSLKRLVL--SDNPLK  143 (150)
Q Consensus       122 ----lp~~~~~~~~L~~l~l--~~n~l~  143 (150)
                          +...+...++|++|++  ++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence                4556777889999999  889875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.30  E-value=7.5e-06  Score=59.19  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-----ccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCC
Q 047447           60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-----EVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSL  132 (150)
Q Consensus        60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-----~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L  132 (150)
                      .+|+.+.+. +.+.......|.++++|+.+.+.++.+.     .++. .+..|++|+.+.+. +.++.++. .|.++++|
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence            455555553 2444444556777777888877776554     3443 56777788888777 34666543 47777888


Q ss_pred             CEEEccCCCCCCC
Q 047447          133 KRLVLSDNPLKIL  145 (150)
Q Consensus       133 ~~l~l~~n~l~~~  145 (150)
                      +.+.+..+ ++.+
T Consensus       326 ~~l~lp~~-l~~I  337 (401)
T 4fdw_A          326 TQLTIPAN-VTQI  337 (401)
T ss_dssp             CEEEECTT-CCEE
T ss_pred             cEEEECcc-ccEE
Confidence            88887544 4443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.1e-06  Score=56.44  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCccc-CCCchhhcCc----CcCceEEecCCC-CCc-cchhhcCCCCCCE
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNF-KILPYELGNL----KALETLIVDGTL-IRE-VPESLGQLSSLKI  111 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l----~~L~~l~l~~n~-l~~-l~~~~~~~~~L~~  111 (150)
                      +.||+++|.+...--..+..+++|++|++++|... ..--..+..+    ++|+.|++++|. +++ --..+..+++|+.
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            78999999855544455788999999999999743 3322344443    479999999984 773 2345668999999


Q ss_pred             EEccCCc-Ccc
Q 047447          112 LVLTNNG-LKR  121 (150)
Q Consensus       112 l~l~~n~-i~~  121 (150)
                      |++++|. +++
T Consensus       144 L~L~~c~~Itd  154 (176)
T 3e4g_A          144 LFLSDLPGVKE  154 (176)
T ss_dssp             EEEESCTTCCC
T ss_pred             EECCCCCCCCc
Confidence            9999987 775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=2.7e-06  Score=58.20  Aligned_cols=65  Identities=26%  Similarity=0.352  Sum_probs=53.0

Q ss_pred             cCcCcCceEEecCCCCCccc---hhhcCCCCCCEEEccCCcCcccCccccCCC--CCCEEEccCCCCC-CCC
Q 047447           81 GNLKALETLIVDGTLIREVP---ESLGQLSSLKILVLTNNGLKRLPESLNQLS--SLKRLVLSDNPLK-ILP  146 (150)
Q Consensus        81 ~~l~~L~~l~l~~n~l~~l~---~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~--~L~~l~l~~n~l~-~~p  146 (150)
                      ..++.|+.|++++|.++.++   ..+..+++|+.|++++|.|+++ ..+..++  +|+.|++++|++. .+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence            45789999999999998654   4567899999999999999987 3344444  8999999999987 454

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=2.4e-05  Score=55.86  Aligned_cols=102  Identities=21%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc--CcCcCceEEecC--CC------CCccchhh--cCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG--NLKALETLIVDG--TL------IREVPESL--GQL  106 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~--n~------l~~l~~~~--~~~  106 (150)
                      +.|.+++|... .++. + .+++|++|++..|.+.......+.  .+++|+.|+++.  +.      +..+.+.+  ..+
T Consensus       175 ~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~  251 (362)
T 2ra8_A          175 NNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF  251 (362)
T ss_dssp             CEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC
T ss_pred             cEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC
Confidence            78888886322 3333 3 378999999988776544333333  689999999853  11      22222333  357


Q ss_pred             CCCCEEEccCCcCcc-cCccc---cCCCCCCEEEccCCCCC
Q 047447          107 SSLKILVLTNNGLKR-LPESL---NQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       107 ~~L~~l~l~~n~i~~-lp~~~---~~~~~L~~l~l~~n~l~  143 (150)
                      ++|++|.+.+|.+.+ .+..+   ..+++|++|+++.|.+.
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            899999999999875 32222   35788999999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.54  E-value=0.00022  Score=43.35  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             cEEEeecCccc-CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCc
Q 047447           63 TSLEIIDCQNF-KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK  120 (150)
Q Consensus        63 ~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~  120 (150)
                      ..++.+++.+. ..+|..  -..+++.|++++|.++.++. .+..+++|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35677766554 245532  22358888888888888876 4577888888888888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.37  E-value=0.00027  Score=46.11  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=58.7

Q ss_pred             cceecccccCCC-----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhc
Q 047447           39 CKLVLEKCLSLQ-----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~  104 (150)
                      +.|++++++.++     .+-..+..-+.|+.|++++|.+...    +.+.+..-.+|+.|++++|.++     .+.+.+.
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~  123 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL  123 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence            456676642222     2233445556777777777776533    2333444466777888777776     2344555


Q ss_pred             CCCCCCEEEccCC---cCcc-----cCccccCCCCCCEEEccCCC
Q 047447          105 QLSSLKILVLTNN---GLKR-----LPESLNQLSSLKRLVLSDNP  141 (150)
Q Consensus       105 ~~~~L~~l~l~~n---~i~~-----lp~~~~~~~~L~~l~l~~n~  141 (150)
                      .-+.|++|+++++   .+..     +.+.+..-+.|+.++++.|.
T Consensus       124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            6666777777654   3332     22334445667777776554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.30  E-value=0.0018  Score=46.44  Aligned_cols=81  Identities=11%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCC
Q 047447           56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLK  133 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~  133 (150)
                      |.++..|+.+.+.. .+.......|.++.+|+.+.+.++ ++.+.. ++..|.+|+.+.+..+ ++.+.. +|.++++|+
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            34444555544432 222222234444555555555432 333322 3444555555554322 333322 244455555


Q ss_pred             EEEccC
Q 047447          134 RLVLSD  139 (150)
Q Consensus       134 ~l~l~~  139 (150)
                      .+++.+
T Consensus       361 ~i~~~~  366 (394)
T 4gt6_A          361 NIEYSG  366 (394)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.25  E-value=0.0022  Score=45.95  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             hcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEc
Q 047447           80 LGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVL  137 (150)
Q Consensus        80 ~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l  137 (150)
                      |..+..|+.+.+. +.+..++. ++..+.+|+.+.+..+ ++.+. .+|.++++|+.+.+
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            4444444444443 22333332 3344444444444322 33322 22444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00038  Score=45.39  Aligned_cols=84  Identities=21%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             cCCCCccEEEeecC-cccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEccCCcCcc-----
Q 047447           57 CMFKSLTSLEIIDC-QNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVLTNNGLKR-----  121 (150)
Q Consensus        57 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~~n~i~~-----  121 (150)
                      ..-+.|++|+++++ .+...    +.+.+..-.+|+.|++++|.++     .+.+.+..-+.|++|+++.|.|.+     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44567888888775 43221    3344555567888888888776     244556666778888888888875     


Q ss_pred             cCccccCCCCCCEEEccCC
Q 047447          122 LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       122 lp~~~~~~~~L~~l~l~~n  140 (150)
                      +.+.+..-+.|+.|++++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            2344555567888888754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.09  E-value=0.0013  Score=39.96  Aligned_cols=55  Identities=24%  Similarity=0.182  Sum_probs=40.4

Q ss_pred             ceecccccCCC--cCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447           40 KLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR   97 (150)
Q Consensus        40 ~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~   97 (150)
                      .++.+++ .++  .+|..+  -.++++|++++|.+....+..|..+++|+.+++.+|.+.
T Consensus        12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4556663 344  666432  246889999998888877778888889999999998775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.06  E-value=0.0024  Score=45.42  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCC
Q 047447           56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLK  133 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~  133 (150)
                      |.++.+++.+.+.. .+.......|.++.+|+.+.+.++.++.+.. ++..|.+|+.+.+..+ ++.+. .+|.++++|+
T Consensus       259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            44455666666643 3333333456777888888887777777655 6677888888887643 55544 3467777777


Q ss_pred             EEEcc
Q 047447          134 RLVLS  138 (150)
Q Consensus       134 ~l~l~  138 (150)
                      .+.+.
T Consensus       337 ~i~ip  341 (379)
T 4h09_A          337 TISYP  341 (379)
T ss_dssp             CCCCC
T ss_pred             EEEEC
Confidence            66654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.05  E-value=0.0035  Score=44.89  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCC
Q 047447           55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSL  132 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L  132 (150)
                      .|..+.+|+.+.+.. .+...-...|..+.+|+.+++.++ ++.+.. ++.+|.+|+.+++..+ ++.+. .+|.++++|
T Consensus       292 ~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            456778888888865 344444456788888888888643 666654 6778888888888765 66654 457888888


Q ss_pred             CEEEccCC
Q 047447          133 KRLVLSDN  140 (150)
Q Consensus       133 ~~l~l~~n  140 (150)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            88887643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.80  E-value=0.0034  Score=44.96  Aligned_cols=86  Identities=12%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCC
Q 047447           55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSL  132 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L  132 (150)
                      .|..+..++.+......+   ....|..+.+|+.+.+.++ ++.+.. ++..+.+|+.+++..+ ++.+. .+|.++++|
T Consensus       271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            455667777776654321   1235667888888888654 555654 6778888888888643 66654 457888888


Q ss_pred             CEEEccCCCCCCCC
Q 047447          133 KRLVLSDNPLKILP  146 (150)
Q Consensus       133 ~~l~l~~n~l~~~p  146 (150)
                      +.+.+..+ ++.++
T Consensus       346 ~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          346 SNINFPLS-LRKIG  358 (394)
T ss_dssp             CEECCCTT-CCEEC
T ss_pred             CEEEECcc-ccEeh
Confidence            88887655 44443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.55  E-value=0.02  Score=40.57  Aligned_cols=84  Identities=23%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCC
Q 047447           55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSL  132 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L  132 (150)
                      .+..+..|+.+.+.. .+...-...|..+..++.+.+.. .+..++. .+..+.+|+.+.+..+.++.+++ .|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~-~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPK-NVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECT-TCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCC-CccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            345566777777765 33333345677788888888865 3555554 66889999999998888888654 58889999


Q ss_pred             CEEEccCC
Q 047447          133 KRLVLSDN  140 (150)
Q Consensus       133 ~~l~l~~n  140 (150)
                      +.+.+..+
T Consensus       313 ~~i~lp~~  320 (379)
T 4h09_A          313 SSVTLPTA  320 (379)
T ss_dssp             CEEECCTT
T ss_pred             CEEEcCcc
Confidence            99988543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 1e-07
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 82  NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNP 141
              +LE L V    + E+P        L+ L+ + N L  +PE      +LK+L +  NP
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELP---QNLKQLHVEYNP 335

Query: 142 LKILPKIL 149
           L+  P I 
Sbjct: 336 LREFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-06
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 57  CMFKSLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVL 114
            +     SLE ++  N K+  LP     L   E LI     + EVPE      +LK L +
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQ---NLKQLHV 331

Query: 115 TNNGLKRLPESLNQLSSLK 133
             N L+  P+    +  L+
Sbjct: 332 EYNPLREFPDIPESVEDLR 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 8   IEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67
             +S  + L   L++ +  I     +  L +   +        +    +    +L +L  
Sbjct: 257 APLSGLTKL-TELKLGANQISNISPLAGLTALTNLELNE----NQLEDISPISNLKNLTY 311

Query: 68  IDCQNFKIL-PYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESL 126
           +      I     + +L  L+ L      + +V  SL  L+++  L   +N +  L   L
Sbjct: 312 LTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-L 369

Query: 127 NQLSSLKRLVLSDN 140
             L+ + +L L+D 
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 32  GIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIV 91
            +  L+    + E  L    + +   +        +   +N       + NLK L  L +
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 92  DGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
               I ++   +  L+ L+ L   NN +  +  SL  L+++  L    N +  L  + N
Sbjct: 315 YFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 102 SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
           S   L  +  L     G+K + + +  L++L ++  S+N L  +  + N
Sbjct: 39  SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKN 86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 95  LIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
           +   +P+ L QL  L  L ++ N L         L        ++N  
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 57  CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116
            + K+L  L++ + + +  LP  L  LK L +L V    +       G L    +    N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 117 N 117
           N
Sbjct: 301 N 301

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 100 PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
              L  L +L  L+L  N L  +P+       L    L  NP 
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 6e-04
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 84  KALETLIVDGTLIREVPESLGQLSSLKILVLTNN-----GLKRLPESLNQLSSLKRLVLS 138
           K+L+   +     + V   L +  S+K +VL+ N       + L E++     L+    S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 139 DNPLKILP 146
           D     + 
Sbjct: 68  DIFTGRVK 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 7e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 86  LETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGL-----KRLPESLNQLSSLKRLVLS 138
           +++L +    + +    E L  L   +++ L + GL     K +  +L    +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 139 DNPL 142
            N L
Sbjct: 64  SNEL 67

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.001
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 101 ESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRL-VLSDNPLKILPKI 148
           +     S   IL ++   +  LP     L +LK+L   S   LK LP +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTL 241

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 40  KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV 99
           +L L+     +   +SL    +L  L +       +    L N   L  L ++   + +V
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 100 PESLGQLSSLKILVLTNNGLKRLPES-------LNQLSSLKRLVLSDNPLKILP 146
           P  L     ++++ L NN +  +  +         + +S   + L  NP++   
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 80  LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSD 139
           L NL  L TL  D   I ++   L  L +L  + L NN +  +   L   S+L  + L++
Sbjct: 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.78
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.9e-19  Score=118.61  Aligned_cols=144  Identities=26%  Similarity=0.265  Sum_probs=103.7

Q ss_pred             CCcEEecccCCCccccccC-Ccc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            4 SLQSIEISNCSILKRFLEI-PSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~-~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      .+++|+|++|.+.+ +|.. +..      +++++|.|+.++.       ++|++++|++ ...+..+..+++|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCC-cCHHHhhccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            57888888876553 3432 222      7778888776665       7788888643 44555677788888888888


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |...+..+..+..+.+++.+++.+|.+..+++ .+..++.++.+++++|.++.++. .+..+++|++|++++|+|+.+|+
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence            77777666666777778888888887777765 44667788888888888887553 46778888888888888888876


Q ss_pred             CC
Q 047447          148 IL  149 (150)
Q Consensus       148 ~~  149 (150)
                      .+
T Consensus       190 ~~  191 (266)
T d1p9ag_         190 GF  191 (266)
T ss_dssp             TT
T ss_pred             hH
Confidence            54

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5e-18  Score=114.87  Aligned_cols=142  Identities=18%  Similarity=0.127  Sum_probs=121.7

Q ss_pred             CCCCCcEEecccCCCccccccCCc-----cccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447            1 MLKSLQSIEISNCSILKRFLEIPS-----CNIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI   67 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~~-----~l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   67 (150)
                      ++++|++|+|++|.+. .+|....     .+++++|+++..+.        ++|+++++......+..+..+.+++++++
T Consensus        53 ~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l  131 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (266)
T ss_dssp             TCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccc
Confidence            4789999999999755 5554322     28899999886655        88999998777766677788999999999


Q ss_pred             ecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447           68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~  143 (150)
                      ++|.+....+..+..++.++.+++++|.++.++. .+..+++|++|++++|.|+.+|+.+..+++|+.+++++|++.
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            9999888777888889999999999999998875 578899999999999999999999999999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=1.2e-18  Score=120.21  Aligned_cols=147  Identities=19%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             CCCCCcEEeccc-CCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccE
Q 047447            1 MLKSLQSIEISN-CSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTS   64 (150)
Q Consensus         1 ~l~~L~~L~l~~-~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~   64 (150)
                      ++++|++|+|++ |++.+.+|..+..      +++++|.+..++.         +++++++|.....+|..+..++.++.
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            367888888875 5667777776554      6677776665433         44555555555555555555555555


Q ss_pred             EEeecCcccCCCchh------------------------------------------------hcCcCcCceEEecCCCC
Q 047447           65 LEIIDCQNFKILPYE------------------------------------------------LGNLKALETLIVDGTLI   96 (150)
Q Consensus        65 L~l~~~~~~~~~~~~------------------------------------------------~~~l~~L~~l~l~~n~l   96 (150)
                      +++++|.+.+.+|..                                                +..++.++.+++.+|.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555444333332                                                33344455555555655


Q ss_pred             CccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC-CCCC
Q 047447           97 REVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK-ILPK  147 (150)
Q Consensus        97 ~~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~-~~p~  147 (150)
                      ...++.++.+++++.+++++|++++ +|.+++++++|++|++++|+++ .+|+
T Consensus       234 ~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            5445566778889999999999986 8999999999999999999988 7875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.3e-17  Score=107.79  Aligned_cols=106  Identities=24%  Similarity=0.260  Sum_probs=92.5

Q ss_pred             cceecccccCCCcC-cccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSL-PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|.+...+ +..|..+++|++|++++|.+....+..|..++.|+.|++++|.++.+++ ++.++++|++|++++
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            68899998776544 4567889999999999999999888889999999999999999998876 678999999999999


Q ss_pred             CcCcccCc-cccCCCCCCEEEccCCCCCC
Q 047447          117 NGLKRLPE-SLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       117 n~i~~lp~-~~~~~~~L~~l~l~~n~l~~  144 (150)
                      |.|+.++. .+..+++|+++++++|++..
T Consensus       112 N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         112 NQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHhcCCccccccccccccccc
Confidence            99999654 58889999999999998863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=8.3e-17  Score=110.53  Aligned_cols=89  Identities=26%  Similarity=0.268  Sum_probs=55.6

Q ss_pred             CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447           59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL  137 (150)
Q Consensus        59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l  137 (150)
                      .+++++|++++|...+..+..+..++.++.+++++|.+..++. .+..+++|++|++++|.++.+|.++..+++|++|++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEEC
Confidence            3445555555555555555556666666666666666665533 455666667777776666666666666666777777


Q ss_pred             cCCCCCCCCC
Q 047447          138 SDNPLKILPK  147 (150)
Q Consensus       138 ~~n~l~~~p~  147 (150)
                      ++|+|+.+++
T Consensus       250 s~N~i~~i~~  259 (305)
T d1xkua_         250 HNNNISAIGS  259 (305)
T ss_dssp             CSSCCCCCCT
T ss_pred             CCCccCccCh
Confidence            7666666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-16  Score=106.57  Aligned_cols=108  Identities=28%  Similarity=0.355  Sum_probs=55.5

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|......+..+.....|+.+++++|.+.+..+..|..+++++.+++++|.+..+++ ++..+++|+++++++|
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            344444443322223333444455555555555444444445555555556655555554433 4455555666666655


Q ss_pred             cCcc-cCccccCCCCCCEEEccCCCCCCCC
Q 047447          118 GLKR-LPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       118 ~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      .+++ .|..+..+++|+++++++|.+..+|
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccChhHhhhhhhccccccccccccccc
Confidence            5555 3445555566666666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.5e-16  Score=94.96  Aligned_cols=104  Identities=26%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|++ +.++ .+..+++|++|++++|.+.. +|+.+..+++|+.+++++|.++.++ .+..+++|+++++++|.
T Consensus         1 R~L~Ls~n~l-~~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL-TVLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC-SSCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC-CCCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            3567777544 3444 36777788888888777654 4556777888888888888877765 46677888888888888


Q ss_pred             CcccCc--cccCCCCCCEEEccCCCCCCCC
Q 047447          119 LKRLPE--SLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus       119 i~~lp~--~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      |++++.  .+..+++|+.+++++|++...+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            877653  4677778888888888776544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=8.1e-16  Score=105.52  Aligned_cols=105  Identities=19%  Similarity=0.204  Sum_probs=90.0

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      +.|++++|......+..+..++.+++|++++|.+.+..+..+.++++|+.|++++|.++.+|+++..+++|+++++++|+
T Consensus       174 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence            45566666555566677888999999999999999888888999999999999999999999999999999999999999


Q ss_pred             CcccCcc-------ccCCCCCCEEEccCCCCC
Q 047447          119 LKRLPES-------LNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       119 i~~lp~~-------~~~~~~L~~l~l~~n~l~  143 (150)
                      |+.++..       ....++|+.+++++|+++
T Consensus       254 i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9987542       234678999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-15  Score=102.31  Aligned_cols=145  Identities=22%  Similarity=0.309  Sum_probs=113.7

Q ss_pred             CCcEEecccCCCccccccCCcc-------ccCCCcCcccccc---------cceecccccCCCcC-cccccCCCCccEEE
Q 047447            4 SLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS---------CKLVLEKCLSLQSL-PSSLCMFKSLTSLE   66 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~-~~~~~~l~~L~~L~   66 (150)
                      .+++|+|++|.+. .+|...+.       +++++|.+..++.         ..+.+..++....+ +..+.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            5788999998754 55654332       7888888876655         44455544455544 56688899999999


Q ss_pred             eecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCCCCC
Q 047447           67 IIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~l~~  144 (150)
                      +++|......+..+....+|+.+++.+|.++.+++ .+..++.|+.+++++|.++.++ ..+..+++|+.+++++|.+..
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99998877777778888999999999999998865 6778899999999999999964 568889999999999999985


Q ss_pred             C-CCCC
Q 047447          145 L-PKIL  149 (150)
Q Consensus       145 ~-p~~~  149 (150)
                      + |..|
T Consensus       192 i~~~~f  197 (284)
T d1ozna_         192 VHPHAF  197 (284)
T ss_dssp             ECTTTT
T ss_pred             cChhHh
Confidence            5 4443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=7.4e-17  Score=104.18  Aligned_cols=116  Identities=19%  Similarity=0.116  Sum_probs=97.3

Q ss_pred             CcEEecccCCCccccccCCcc----ccCCCcCccc-ccc---------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            5 LQSIEISNCSILKRFLEIPSC----NIDGGIGIER-LAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         5 L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~-l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      .+.++.++++ ++.+|..+..    +++++|.|+. ++.         ++|++++|.+....+..+..+++|++|++++|
T Consensus        10 ~~~v~Cs~~~-L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCC-cCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4678888765 4466765433    8889998874 322         78999998888787888899999999999999


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR  121 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~  121 (150)
                      ++.+..+..|.++++|++|++++|.++.+++ ++..+++|+++++++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999888899999999999999999998876 67899999999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3e-15  Score=97.82  Aligned_cols=137  Identities=26%  Similarity=0.277  Sum_probs=85.8

Q ss_pred             CCCcEEecccCCCcccccc-----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            3 KSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      ..|++|++++|.+.. ++.     .+..+++++|.++.++.       ++|++++|++ +.++ .+..+++|+.+++++|
T Consensus        46 ~~L~~L~l~~~~i~~-l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCC-chhHhhCCCCCEEeCCCccccCccccccCccccccccccccc-cccc-cccccccccccccccc
Confidence            356677777665432 221     11226666666665554       6677777543 3444 3667777777777776


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP  146 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p  146 (150)
                      .....  +.+..++.++.+++.+|.++..+ .+..+++|+.+++++|.+++++. +..+++|+.|++++|.++.+|
T Consensus       123 ~~~~~--~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         123 GISDI--NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CCCCC--GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccc--ccccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh
Confidence            65432  24566777777777777766543 34456777777777777776543 666777777777777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4e-15  Score=96.42  Aligned_cols=139  Identities=20%  Similarity=0.270  Sum_probs=108.3

Q ss_pred             CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      ++++++|++++|.+.. ++.     .+..+++++|.++.++.       ++|++++|.. ..++ .+..++.|+.+++++
T Consensus        39 l~~l~~L~l~~~~i~~-l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCC-ccccccCCCcCcCccccccccCcccccCCccccccccccccc-cccc-ccccccccccccccc
Confidence            4678888888876543 321     12227888888876654       7888988654 3444 478899999999998


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      |......  .+..+++|+.+++++|.+..++ .+..+++++.+++.+|.+++++ .+.++++|++|++++|+++.+|.
T Consensus       116 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         116 NQITDID--PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccc--ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCcc
Confidence            8776643  4678999999999999988765 5778999999999999999875 47899999999999999998763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=1.3e-16  Score=109.88  Aligned_cols=139  Identities=17%  Similarity=0.098  Sum_probs=111.3

Q ss_pred             CCCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEE
Q 047447            2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLE   66 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~   66 (150)
                      ++.++++++++|.+.+.+|..+..       ++++.|.++....        ..++++++...+..|..+..+++++.++
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            566777777777766666654433       4556666653322        5567777777778888888999999999


Q ss_pred             eecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCC
Q 047447           67 IIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPL  142 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l  142 (150)
                      +++|.+.+.++ .+..+++++.+++++|.++ .+|+.++++++|++|++++|++++ +|. ++++++|+.+++++|+.
T Consensus       228 ~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             ccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            99999887765 5788899999999999998 899999999999999999999997 874 57888999999999974

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.1e-14  Score=93.81  Aligned_cols=86  Identities=22%  Similarity=0.271  Sum_probs=58.9

Q ss_pred             CCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447           58 MFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL  137 (150)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l  137 (150)
                      ..+.+..+.++++.+...  ..+..++.++.+++.+|.+...+. +..+++|+.+++++|.+++++. +..+++|++|++
T Consensus       127 ~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHL  202 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred             cccchhhhhchhhhhchh--hhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEEC
Confidence            334444444444333322  224566778888888887765543 6678888888888888888754 778888889999


Q ss_pred             cCCCCCCCCC
Q 047447          138 SDNPLKILPK  147 (150)
Q Consensus       138 ~~n~l~~~p~  147 (150)
                      ++|+++.+|+
T Consensus       203 s~N~lt~i~~  212 (227)
T d1h6ua2         203 KNNQISDVSP  212 (227)
T ss_dssp             TTSCCCBCGG
T ss_pred             cCCcCCCCcc
Confidence            8888887763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2e-14  Score=100.85  Aligned_cols=137  Identities=23%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447            2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID   69 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   69 (150)
                      ++.|++|++++|.+.. ++.     .+..+++++|.++.++.       ++++++++... .++ .+..++.++.+++..
T Consensus       218 ~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~-~~~-~~~~~~~l~~l~~~~  294 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NIS-PLAGLTALTNLELNE  294 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCS
T ss_pred             cCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCcccccccCCEeeccCcccC-CCC-ccccccccccccccc
Confidence            4567777777775443 221     11126666666665544       55666664432 222 134444555555554


Q ss_pred             CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCC
Q 047447           70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      |.+.+.  ..+..++.++.+++++|.++.+++ +..+++|+.|++++|.+++++ .+..+++|+++++++|+++.+
T Consensus       295 n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         295 NQLEDI--SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             SCCSCC--GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             cccccc--cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCC
Confidence            444332  123444555555555555544432 344555555555555555443 344455555555555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.3e-14  Score=93.54  Aligned_cols=132  Identities=22%  Similarity=0.245  Sum_probs=106.2

Q ss_pred             CCCCCcEEecccCCCccccccCC-----ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            1 MLKSLQSIEISNCSILKRFLEIP-----SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~-----~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      +|++|++|++++|.+.+ ++...     ..+++++|.++.++.       +.+++++|... .+ ..+..++.++.++++
T Consensus        66 ~l~~L~~L~L~~n~i~~-l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLG  142 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECC
T ss_pred             hCCCCCEEeCCCccccC-ccccccCcccccccccccccccccccccccccccccccccccc-cc-ccccccccccccccc
Confidence            37899999999997665 33221     128899999988776       78899887543 33 357889999999999


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccC
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSD  139 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~  139 (150)
                      +|.+...  ..+..+++|+.+++++|.++.+++ +.++++|+.|++++|.+++++ .+.++++|++|++++
T Consensus       143 ~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccc--cccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            9887653  346688999999999999987764 778999999999999999986 588999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=3.7e-14  Score=99.44  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=93.5

Q ss_pred             CCCCcEEecccCCCccccccCC----ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447            2 LKSLQSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC   70 (150)
Q Consensus         2 l~~L~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (150)
                      ++.|++|++++|.+.+..+...    ..++++++.++.++.       +.+.+++|.+.. + ..+..+++++.+++++|
T Consensus       240 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSS
T ss_pred             ccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccccc-c-cccchhcccCeEECCCC
Confidence            5678888888877554322111    117788888887776       556666654332 2 34667788888888888


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n  140 (150)
                      ++.+..+  +..+++|+.|++++|.++.++ .+..+++|+++++++|++++++. +.++++|+.|++++|
T Consensus       318 ~l~~l~~--l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         318 NISDISP--VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCcc--cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            7766532  667888888888888887765 46778888888888888888653 677888888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5.7e-14  Score=90.86  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=101.2

Q ss_pred             CCCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447            1 MLKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII   68 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   68 (150)
                      +|++|++|++++|.+.+ ++..     +..+++++|.+..++.       ++++++++.....  ..+..+++|+.++++
T Consensus        60 ~l~nL~~L~Ls~N~l~~-~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS  136 (199)
T ss_dssp             GCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             cCCCcCcCccccccccC-cccccCCcccccccccccccccccccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence            37899999999997654 3331     1228888888887765       7788988655432  347789999999999


Q ss_pred             cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEE
Q 047447           69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRL  135 (150)
Q Consensus        69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l  135 (150)
                      +|.+...  +.+..+++++.+++.+|.++.++ .++++++|++|++++|++++++ .+..+++|+.|
T Consensus       137 ~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         137 SNTISDI--SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             hhhhccc--ccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            9887543  35788999999999999998876 4788999999999999999975 57888888865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.8e-15  Score=93.60  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~  116 (150)
                      +.|++++|.+ ..++ .+..+++|++|++++|.+....+..+..+++++.+++++|.++.++.  .+..+++|+++++++
T Consensus        44 ~~L~Ls~N~i-~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          44 DAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             SEEECCSSCC-CEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             CEEECCCCCC-CccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCC
Confidence            4677777543 3333 46677777777777777766555555667777777777777776543  456777777777777


Q ss_pred             CcCcccCc----cccCCCCCCEEE
Q 047447          117 NGLKRLPE----SLNQLSSLKRLV  136 (150)
Q Consensus       117 n~i~~lp~----~~~~~~~L~~l~  136 (150)
                      |+++..|.    .+..+++|+.||
T Consensus       122 N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         122 NPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             CccccccchHHHHHHHCCCcCeeC
Confidence            77776654    356677777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.4e-14  Score=85.39  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=88.1

Q ss_pred             cEEecccCCCccccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcC
Q 047447            6 QSIEISNCSILKRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLK   84 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~   84 (150)
                      ++|+|++|++. .++.           +..++. ++|++++|. ++.+|..+..+++|+.|++++|.+... | .+..++
T Consensus         1 R~L~Ls~n~l~-~l~~-----------l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~   65 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-----------LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENV-D-GVANLP   65 (124)
T ss_dssp             SEEECTTSCCS-SCCC-----------GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCS
T ss_pred             CEEEcCCCCCC-CCcc-----------cccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccccccc-C-cccccc
Confidence            57888887754 3322           222333 689999965 567888899999999999999988765 3 488999


Q ss_pred             cCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcccC---cc-ccCCCCCCEE
Q 047447           85 ALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKRLP---ES-LNQLSSLKRL  135 (150)
Q Consensus        85 ~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~lp---~~-~~~~~~L~~l  135 (150)
                      +|+.+++++|.++.++.  .+..+++|+.+++++|+++..+   .. ...+++++.+
T Consensus        66 ~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          66 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999999997753  6788999999999999988643   32 3446777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.3e-15  Score=92.04  Aligned_cols=106  Identities=25%  Similarity=0.306  Sum_probs=89.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n  117 (150)
                      ++|++++|. ++.++..+..+++|+.|++++|.+...  +.+..+++|+.+++++|.++.+++. +..+++|+++++++|
T Consensus        21 r~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          21 RELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             EEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             cEEECCCCC-CCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceeccc
Confidence            578999965 455566567799999999999988765  3478899999999999999988764 467999999999999


Q ss_pred             cCcccCc--cccCCCCCCEEEccCCCCCCCCC
Q 047447          118 GLKRLPE--SLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       118 ~i~~lp~--~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .++.+++  .+..+++|+++++++|++...|.
T Consensus        98 ~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          98 SLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cccccccccccccccccchhhcCCCccccccc
Confidence            9998764  57889999999999999887663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.4e-14  Score=86.84  Aligned_cols=101  Identities=29%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             eecccccCCCcCcccccCCCCccEEEeecCc-ccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCc
Q 047447           41 LVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ-NFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNG  118 (150)
Q Consensus        41 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~  118 (150)
                      ++.++ +.....|..+..++++++|++.+++ +....++.|..+++|+.|++++|.++.+++ ++..+++|+++++++|.
T Consensus        13 l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            44444 2334445555566666666665544 444444556666666666666666666543 45666666666666666


Q ss_pred             CcccCccccCCCCCCEEEccCCCC
Q 047447          119 LKRLPESLNQLSSLKRLVLSDNPL  142 (150)
Q Consensus       119 i~~lp~~~~~~~~L~~l~l~~n~l  142 (150)
                      ++.+|..+.....|+.+++++|++
T Consensus        92 l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CcccChhhhccccccccccCCCcc
Confidence            666655543334566666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=9e-13  Score=86.63  Aligned_cols=135  Identities=23%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CCCCCcEEecccCCCccccccCC----ccccCCCcCcccccc-------cceecccccCCC-------------------
Q 047447            1 MLKSLQSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS-------CKLVLEKCLSLQ-------------------   50 (150)
Q Consensus         1 ~l~~L~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~-------~~L~l~~~~~~~-------------------   50 (150)
                      +|++|++|++++|.+.+..|-..    ..++++++.++.++.       +++.++++....                   
T Consensus        61 ~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhh
Confidence            37889999999987665333111    116666666665544       333333332111                   


Q ss_pred             -cCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCC
Q 047447           51 -SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQL  129 (150)
Q Consensus        51 -~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~  129 (150)
                       .....+...++++.|++++|.+....  .+..+++|+.+++++|.++.+++ +..+++|++|++++|++++++. +.++
T Consensus       141 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l  216 (227)
T d1h6ua2         141 ITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANT  216 (227)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTC
T ss_pred             hchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccC
Confidence             01123567888999999998876543  37889999999999999988764 7789999999999999999864 7899


Q ss_pred             CCCCEEEccC
Q 047447          130 SSLKRLVLSD  139 (150)
Q Consensus       130 ~~L~~l~l~~  139 (150)
                      ++|+.+++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            9999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=86.71  Aligned_cols=144  Identities=16%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             CCcEEecccCCCccccccCCcc-------ccCCCcCcccc-cc---------cceecccccCC-CcCcccccCCCCccEE
Q 047447            4 SLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERL-AS---------CKLVLEKCLSL-QSLPSSLCMFKSLTSL   65 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l-~~---------~~L~l~~~~~~-~~~~~~~~~l~~L~~L   65 (150)
                      .+++|++++|.+. .+|...+.       +++++|.+... +.         .++.+..++.. ...+..+.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            5677777776543 44443221       56666654431 11         44555443333 3334556667777777


Q ss_pred             EeecCcccCC-------------------------CchhhcCcC-cCceEEecCCCCCccchhhcCCCCCCEEE-ccCCc
Q 047447           66 EIIDCQNFKI-------------------------LPYELGNLK-ALETLIVDGTLIREVPESLGQLSSLKILV-LTNNG  118 (150)
Q Consensus        66 ~l~~~~~~~~-------------------------~~~~~~~l~-~L~~l~l~~n~l~~l~~~~~~~~~L~~l~-l~~n~  118 (150)
                      ++++|.+...                         .+..|..++ .++.+++.+|.++.++........++.+. +.+|.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            7776654322                         112222332 45567777777777666555566666654 56677


Q ss_pred             CcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447          119 LKRLPES-LNQLSSLKRLVLSDNPLKILPKI  148 (150)
Q Consensus       119 i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~  148 (150)
                      ++.+|.. +.++++|++|++++|+++.+|..
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            8888765 78899999999999999988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=76.94  Aligned_cols=82  Identities=24%  Similarity=0.179  Sum_probs=70.9

Q ss_pred             cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447           39 CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN  117 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n  117 (150)
                      ++|++++++.++.++ ..|.++++|+.|++++|++....+..|..+++|+.+++++|.++.++........++.+++++|
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCC
Confidence            578888776566665 5688999999999999999988888999999999999999999999886555567999999999


Q ss_pred             cCc
Q 047447          118 GLK  120 (150)
Q Consensus       118 ~i~  120 (150)
                      .+.
T Consensus       114 p~~  116 (156)
T d2ifga3         114 PLH  116 (156)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=4.7e-13  Score=86.50  Aligned_cols=80  Identities=24%  Similarity=0.220  Sum_probs=40.0

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccC
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTN  116 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~  116 (150)
                      ++|++++|. ++.++.....+++|++|++++|.+...  +.+..+++|+.+++++|.++.++.  .+..+++|+.+++++
T Consensus        73 ~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          73 RILSLGRNL-IKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             CEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             cChhhcccc-ccccccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCC
Confidence            455555543 233333333344555555555554432  224455556666666555554432  345555566666655


Q ss_pred             CcCcc
Q 047447          117 NGLKR  121 (150)
Q Consensus       117 n~i~~  121 (150)
                      |++..
T Consensus       150 N~l~~  154 (198)
T d1m9la_         150 NPLYN  154 (198)
T ss_dssp             SHHHH
T ss_pred             Ccccc
Confidence            55443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-10  Score=76.82  Aligned_cols=93  Identities=13%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             cEEecccCCCccccccCCcc----ccCCCcCcccccc---------cceecccccCCCcCc-ccccCCCCccEEEeec-C
Q 047447            6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS---------CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIID-C   70 (150)
Q Consensus         6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~   70 (150)
                      +.++.++.. .+.+|..+..    +++++|.++.+|.         ++|++++|.....++ ..|..++.++++.+.. +
T Consensus        11 ~~i~c~~~~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCS-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCC-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            567777654 4466655433    7777777776655         777888876655444 4566778888777664 3


Q ss_pred             cccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447           71 QNFKILPYELGNLKALETLIVDGTLIREV   99 (150)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l   99 (150)
                      .+....+..|..+++|+.+++.+|.+...
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             cccccccccccccccccccccchhhhccc
Confidence            55555566677888888888888766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1e-12  Score=84.85  Aligned_cols=101  Identities=24%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447           39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG  118 (150)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~  118 (150)
                      ++|++++|++ +.++ .+..+++|+.|++++|.+.. ++..+..+++|+.+++++|.++.++ .+..+++|+.+++++|.
T Consensus        51 ~~L~Ls~n~I-~~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          51 KHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CEEECSEEEE-SCCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred             ceeECcccCC-CCcc-cccCCccccChhhccccccc-ccccccccccccccccccccccccc-cccccccccccccccch
Confidence            7899999765 4554 57889999999999988764 4444455678999999999998774 46678899999999999


Q ss_pred             CcccC--ccccCCCCCCEEEccCCCCC
Q 047447          119 LKRLP--ESLNQLSSLKRLVLSDNPLK  143 (150)
Q Consensus       119 i~~lp--~~~~~~~~L~~l~l~~n~l~  143 (150)
                      |+.++  ..+..+++|+.|++++|++.
T Consensus       127 i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         127 ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             hccccccccccCCCccceeecCCCccc
Confidence            99876  35889999999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.2e-10  Score=78.94  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             cCcCcCceEEecCC-CCC-ccchhhcCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEEEccCC
Q 047447           81 GNLKALETLIVDGT-LIR-EVPESLGQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRLVLSDN  140 (150)
Q Consensus        81 ~~l~~L~~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l~~n  140 (150)
                      ..+++|+.|++++| .++ .....+.++++|+++++++|. +++ ....++.+++|+.++++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34566666666665 344 333455566667777776653 554 3334556666777766654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=7.7e-09  Score=70.88  Aligned_cols=60  Identities=32%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             CcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447           82 NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus        82 ~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                      .+++|++|++++|.++.+|..   +++|+.|++++|.|+.+|..   +++|++|++++|+++.+|.
T Consensus       282 ~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC
T ss_pred             cCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCCc
Confidence            457789999999988887753   56788899999988888753   4578889999999887774

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=2.8e-08  Score=68.03  Aligned_cols=137  Identities=26%  Similarity=0.379  Sum_probs=80.5

Q ss_pred             CCcEEecccCCCccccccCCcc---ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccCC
Q 047447            4 SLQSIEISNCSILKRFLEIPSC---NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI   75 (150)
Q Consensus         4 ~L~~L~l~~~~~~~~~p~~~~~---l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   75 (150)
                      .+++|+|+++.+ +.+|+....   +++++|.|+.+|.     +.|++++|.. ..++..   .+.|++|++++|.+.. 
T Consensus        39 ~l~~LdLs~~~L-~~lp~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l-~~l~~l---p~~L~~L~L~~n~l~~-  112 (353)
T d1jl5a_          39 QAHELELNNLGL-SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQLEK-  112 (353)
T ss_dssp             TCSEEECTTSCC-SCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSCCSS-
T ss_pred             CCCEEEeCCCCC-CCCCCCCCCCCEEECCCCCCcccccchhhhhhhhhhhccc-chhhhh---cccccccccccccccc-
Confidence            577888887764 456654433   7778888887776     6777777543 333211   1357777777776554 


Q ss_pred             CchhhcCcCcCceEEecCCCCCccch-------------------hhcCCCCCCEEEccCCcCcccCc------------
Q 047447           76 LPYELGNLKALETLIVDGTLIREVPE-------------------SLGQLSSLKILVLTNNGLKRLPE------------  124 (150)
Q Consensus        76 ~~~~~~~l~~L~~l~l~~n~l~~l~~-------------------~~~~~~~L~~l~l~~n~i~~lp~------------  124 (150)
                      +|. +..++.|+.+++.++.+...+.                   .+..++.++.+.+..|.+...+.            
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~  191 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  191 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccc
Confidence            333 4566777777777665442211                   23345556666666655443211            


Q ss_pred             -------cccCCCCCCEEEccCCCCCCCCC
Q 047447          125 -------SLNQLSSLKRLVLSDNPLKILPK  147 (150)
Q Consensus       125 -------~~~~~~~L~~l~l~~n~l~~~p~  147 (150)
                             .+..++.++.++++.|....+|.
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKTLPD  221 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCCS
T ss_pred             cccccccccccccccccccccccccccccc
Confidence                   13445677788887777665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.5e-10  Score=76.53  Aligned_cols=141  Identities=20%  Similarity=0.240  Sum_probs=90.9

Q ss_pred             CCCcEEecccCCCcccccc-------CCccccCCCcCccc--------ccc-cceecccccCCCc--CcccccCCCCccE
Q 047447            3 KSLQSIEISNCSILKRFLE-------IPSCNIDGGIGIER--------LAS-CKLVLEKCLSLQS--LPSSLCMFKSLTS   64 (150)
Q Consensus         3 ~~L~~L~l~~~~~~~~~p~-------~~~~l~l~~~~l~~--------l~~-~~L~l~~~~~~~~--~~~~~~~l~~L~~   64 (150)
                      ..|++||+++|.+.+....       .+..+.+.++.+..        .+. ++|++++|...+.  +..-...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4678888887765433211       11225566655431        222 7889998866552  2223456889999


Q ss_pred             EEeecCcccCC--Cchhhc-CcCcCceEEecCC--CCC--ccchhhcCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEE
Q 047447           65 LEIIDCQNFKI--LPYELG-NLKALETLIVDGT--LIR--EVPESLGQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRL  135 (150)
Q Consensus        65 L~l~~~~~~~~--~~~~~~-~l~~L~~l~l~~n--~l~--~l~~~~~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l  135 (150)
                      |++++|.....  ....+. ..+.|+.++++++  .++  .+......+++|+++++++|. +++ ....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            99998754321  122222 3468999999876  344  233344678999999999876 776 55678889999999


Q ss_pred             EccCC-CCC
Q 047447          136 VLSDN-PLK  143 (150)
Q Consensus       136 ~l~~n-~l~  143 (150)
                      +++++ .+.
T Consensus       206 ~L~~C~~i~  214 (284)
T d2astb2         206 SLSRCYDII  214 (284)
T ss_dssp             ECTTCTTCC
T ss_pred             ECCCCCCCC
Confidence            99985 454

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=1.5e-09  Score=75.08  Aligned_cols=106  Identities=19%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             cceecccccCCCc-----CcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKCLSLQS-----LPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      +++++++|.+...     +...+...++|+.|++++|.+...    +...+..+++|+.|++++|.++.     +...+.
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            5566666544321     223345566777777777665432    23345566777777777777652     222332


Q ss_pred             --CCCCCCEEEccCCcCcc-----cCcccc-CCCCCCEEEccCCCCCC
Q 047447          105 --QLSSLKILVLTNNGLKR-----LPESLN-QLSSLKRLVLSDNPLKI  144 (150)
Q Consensus       105 --~~~~L~~l~l~~n~i~~-----lp~~~~-~~~~L~~l~l~~n~l~~  144 (150)
                        ....++++++++|.|+.     +...+. +.++|+++++++|.+..
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              23567777777777764     222332 45677777887777653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=2.3e-09  Score=74.06  Aligned_cols=105  Identities=13%  Similarity=0.133  Sum_probs=70.1

Q ss_pred             cceecccccCCC----cCcccccCCCCccEEEeecCcccCC-----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKCLSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI-----LPYELGNLKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      +.+.++++.+..    .+...+.....++.+++++|.+...     +...+...++|+.|++++|.++.     +...+.
T Consensus       161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~  240 (344)
T d2ca6a1         161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  240 (344)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             ceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccc
Confidence            345556644322    2223345567888999988876542     22345667889999999988762     344567


Q ss_pred             CCCCCCEEEccCCcCcc-----cCccccC--CCCCCEEEccCCCCC
Q 047447          105 QLSSLKILVLTNNGLKR-----LPESLNQ--LSSLKRLVLSDNPLK  143 (150)
Q Consensus       105 ~~~~L~~l~l~~n~i~~-----lp~~~~~--~~~L~~l~l~~n~l~  143 (150)
                      .++.|+++++++|.|++     +...+..  ...|++|++++|.+.
T Consensus       241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            88889999999998875     2223333  357899999998874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-08  Score=71.67  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             cceecccccCCC----cCcccccCCCCccEEEeecCcccCC----CchhhcC-cCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKCLSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGN-LKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      ++|++++|.+..    .+...+...++|++|++++|.+...    +...+.. ..+|+.|++++|.++.     ++..+.
T Consensus        30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~  109 (460)
T d1z7xw1          30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR  109 (460)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred             CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh
Confidence            456666664432    2334455666777777776655321    1112221 2356777777776652     233455


Q ss_pred             CCCCCCEEEccCCcCcc
Q 047447          105 QLSSLKILVLTNNGLKR  121 (150)
Q Consensus       105 ~~~~L~~l~l~~n~i~~  121 (150)
                      .+++|+++++++|.+++
T Consensus       110 ~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         110 TLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             SCTTCCEEECCSSBCHH
T ss_pred             ccccccccccccccchh
Confidence            66667777777766654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-08  Score=71.08  Aligned_cols=105  Identities=27%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             cceecccccCCCcC----cccccCCCCccEEEeecCcccCC----Cchhhc-CcCcCceEEecCCCCCc-----cchhhc
Q 047447           39 CKLVLEKCLSLQSL----PSSLCMFKSLTSLEIIDCQNFKI----LPYELG-NLKALETLIVDGTLIRE-----VPESLG  104 (150)
Q Consensus        39 ~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~l~~L~~l~l~~n~l~~-----l~~~~~  104 (150)
                      +.+++++|......    ...+...++|++|++++|.+...    +++.+. ....|++|++++|.++.     +...+.
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            45666665543322    12233456778888887776432    223332 34567888888887762     334455


Q ss_pred             CCCCCCEEEccCCcCcc-----cCcccc-CCCCCCEEEccCCCCC
Q 047447          105 QLSSLKILVLTNNGLKR-----LPESLN-QLSSLKRLVLSDNPLK  143 (150)
Q Consensus       105 ~~~~L~~l~l~~n~i~~-----lp~~~~-~~~~L~~l~l~~n~l~  143 (150)
                      .+++|++|++++|.|++     +.+.+. ..+.|+.+++.++.+.
T Consensus       395 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            67778888888887764     222232 2336778888777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.5e-08  Score=60.66  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             ccCCCCccEEEeecCcccCCC--chhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCccc-Cc-------
Q 047447           56 LCMFKSLTSLEIIDCQNFKIL--PYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRL-PE-------  124 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~l-p~-------  124 (150)
                      ...+++|++|++++|.+....  +..+..+++|+.|++++|.++.+++ .......++.+++.+|++... ..       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            356889999999999987753  4556788999999999999998766 333455789999999998763 21       


Q ss_pred             cccCCCCCCEEE
Q 047447          125 SLNQLSSLKRLV  136 (150)
Q Consensus       125 ~~~~~~~L~~l~  136 (150)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256788999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.6e-08  Score=60.59  Aligned_cols=69  Identities=26%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             CchhhcCcCcCceEEecCCCCCccc---hhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCCCC
Q 047447           76 LPYELGNLKALETLIVDGTLIREVP---ESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKI  144 (150)
Q Consensus        76 ~~~~~~~l~~L~~l~l~~n~l~~l~---~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l~~  144 (150)
                      ++..+..++.|+.+++++|.++.+.   ..+..+++|+.+++++|.|+.+++. ......|+.+++++|++..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3334457899999999999998653   3567899999999999999997652 3445579999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.13  E-value=1.1e-06  Score=54.51  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             ccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCccc----
Q 047447           56 LCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKRL----  122 (150)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~l----  122 (150)
                      +...+.+++|++++|.+...    +.+.+...+.|+.|++++|.++.     +...+...++|+++++++|.+..+    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            44455666777776655422    22334445667777777776652     233455666677777766654432    


Q ss_pred             ----CccccCCCCCCEEEccCC
Q 047447          123 ----PESLNQLSSLKRLVLSDN  140 (150)
Q Consensus       123 ----p~~~~~~~~L~~l~l~~n  140 (150)
                          ...+...++|+.++++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence                223344566777766544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.12  E-value=2.6e-06  Score=52.70  Aligned_cols=89  Identities=21%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             cCCCCccEEEeecCc-ccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEccCCcCcc-----
Q 047447           57 CMFKSLTSLEIIDCQ-NFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVLTNNGLKR-----  121 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~-~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~~n~i~~-----  121 (150)
                      .+.++|++|++++++ +...    +...+....+++.|++++|.++     .+...+...+.|+++++++|.|++     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            346889999998754 4332    2335667788999999999887     233456678899999999999886     


Q ss_pred             cCccccCCCCCCEEEccCCCCCCC
Q 047447          122 LPESLNQLSSLKRLVLSDNPLKIL  145 (150)
Q Consensus       122 lp~~~~~~~~L~~l~l~~n~l~~~  145 (150)
                      +-..+...++|++|++++|.+..+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCc
Confidence            234567778999999999876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.68  E-value=5.8e-06  Score=50.92  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             cccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEc--cCCcCcc--
Q 047447           55 SLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVL--TNNGLKR--  121 (150)
Q Consensus        55 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l--~~n~i~~--  121 (150)
                      .+...++|++|++++|.+...    +.+.+....+++.+++.+|.++     .+...+...++++.+++  +.|.+.+  
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            344566777777777765443    2233445567777777777665     12345566677776554  3445543  


Q ss_pred             ---cCccccCCCCCCEEEccCCC
Q 047447          122 ---LPESLNQLSSLKRLVLSDNP  141 (150)
Q Consensus       122 ---lp~~~~~~~~L~~l~l~~n~  141 (150)
                         +.+.+...+.|+.|+++.+.
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCC
Confidence               33445566777777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00055  Score=41.65  Aligned_cols=86  Identities=21%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             cCCCCccEEEeecCc-ccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc-----
Q 047447           57 CMFKSLTSLEIIDCQ-NFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR-----  121 (150)
Q Consensus        57 ~~l~~L~~L~l~~~~-~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~-----  121 (150)
                      .+.+.|++|+++++. +...    +...+...++|+.|++++|.++.     +...+...++++.+++.+|.++.     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            456899999998743 4322    33445678899999999998872     33456678899999999999875     


Q ss_pred             cCccccCCCCCCEEEcc--CCCC
Q 047447          122 LPESLNQLSSLKRLVLS--DNPL  142 (150)
Q Consensus       122 lp~~~~~~~~L~~l~l~--~n~l  142 (150)
                      +...+...++|+.++++  +|.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHhCccccEEeeccCCCcC
Confidence            33556777889887765  4555