Citrus Sinensis ID: 047448

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
cHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHcc
cHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcc
lqllrrydnrseshraqlldddgpsyVRVFVSILRDIYKEETVEYVLALIDEMLTanpkrarlfhdkslasedtyepflsnwfIQEKSCKILASIVRYLkhdpfaqrcnsleVGIFCYIQLLilkkpshpsrgvpVAINCLAALLkepmvrssfvqadgvklltplispastQQSIQLAGAMLALAVACFdlsqfiqyhpagrVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
lqllrrydnrseshraqlldddgpsyVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMnhentevtksALLCIQRLFLGAKYASFLQA
LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
***********************PSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASF***
LQLLRR*D************DDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYL*********NSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK*ASFLQA
LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
Q9LX65 441 V-type proton ATPase subu yes no 0.955 0.539 0.557 5e-68
Q84ZC0 452 Probable V-type proton AT yes no 0.698 0.384 0.57 1e-53
Q9UI12 483 V-type proton ATPase subu yes no 0.642 0.331 0.229 4e-09
Q8BVE3 483 V-type proton ATPase subu yes no 0.642 0.331 0.229 6e-09
Q9TVC1 483 V-type proton ATPase subu yes no 0.642 0.331 0.229 6e-08
O46563 483 V-type proton ATPase subu yes no 0.654 0.337 0.232 1e-07
Q9U5N0475 V-type proton ATPase subu N/A no 0.172 0.090 0.385 2e-07
Q9V3J1 468 V-type proton ATPase subu yes no 0.602 0.320 0.245 5e-07
O14265450 V-type proton ATPase subu yes no 0.216 0.12 0.444 6e-06
Q8MML6 445 V-type proton ATPase subu yes no 0.843 0.471 0.254 0.0004
>sp|Q9LX65|VATH_ARATH V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 141/253 (55%), Positives = 175/253 (69%), Gaps = 15/253 (5%)

Query: 1   LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKR 60
           LQLLRRYD + ES RAQLLD+DGP+YV +FVSILRDI+KEETVEYVLALI EML+ANP R
Sbjct: 32  LQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTR 91

Query: 61  ARLFHDKSLASEDTYEPFL-----SNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGI 115
           ARLFHD+SLA+EDTYEPFL      NWFIQEKSCKILA I+        A   N ++  +
Sbjct: 92  ARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNGIDDVL 151

Query: 116 FCYIQLLI--LKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQ 173
              ++ L   LK+PSHP+RGVP+AI+CL++LLKEP+VRSSFVQADGVKLL PLISPASTQ
Sbjct: 152 KGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQ 211

Query: 174 QSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE-VTKSALL 232
           QSIQL      L   C  +     Y PA   + T  +  +R+ +++ H   E V +  +L
Sbjct: 212 QSIQL------LYETCLCIWLLSYYEPAIEYLATS-RTMQRLTEVVKHSTKEKVVRVVIL 264

Query: 233 CIQRLFLGAKYAS 245
             + L     + +
Sbjct: 265 TFRNLLPKGTFGA 277
Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84ZC0|VATH_ORYSJ Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1 Back     alignment and function description
>sp|Q9UI12|VATH_HUMAN V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1 Back     alignment and function description
>sp|Q8BVE3|VATH_MOUSE V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1 Back     alignment and function description
>sp|Q9TVC1|VATH_PIG V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1 Back     alignment and function description
>sp|O46563|VATH_BOVIN V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2 Back     alignment and function description
>sp|Q9U5N0|VATH_MANSE V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|Q9V3J1|VATH_DROME V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=2 SV=2 Back     alignment and function description
>sp|O14265|VATH_SCHPO V-type proton ATPase subunit H OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma13 PE=3 SV=2 Back     alignment and function description
>sp|Q8MML6|VATH_DICDI V-type proton ATPase subunit H OS=Dictyostelium discoideum GN=vatH PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
356498440 452 PREDICTED: V-type proton ATPase subunit 0.799 0.440 0.625 4e-67
225454716 460 PREDICTED: V-type proton ATPase subunit 0.959 0.519 0.557 4e-67
14334994 441 AT3g42050/F4M19_10 [Arabidopsis thaliana 0.955 0.539 0.557 8e-67
356559428 452 PREDICTED: V-type proton ATPase subunit 0.799 0.440 0.625 1e-66
449437702 454 PREDICTED: V-type proton ATPase subunit 0.807 0.442 0.653 1e-66
15228443 441 V-type proton ATPase subunit H [Arabidop 0.955 0.539 0.557 3e-66
222424600 436 AT3G42050 [Arabidopsis thaliana] 0.955 0.545 0.557 4e-66
224145903 447 predicted protein [Populus trichocarpa] 0.803 0.447 0.638 3e-65
217073296 452 unknown [Medicago truncatula] gi|3884915 0.807 0.444 0.613 5e-65
297737281 483 unnamed protein product [Vitis vinifera] 0.959 0.494 0.513 4e-64
>gi|356498440|ref|XP_003518060.1| PREDICTED: V-type proton ATPase subunit H-like [Glycine max] Back     alignment and taxonomy information
 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/227 (62%), Positives = 158/227 (69%), Gaps = 28/227 (12%)

Query: 1   LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKR 60
           LQLLRRYD+R ESHRAQLLDDDGPSYVRVFV +LRDI+KE+TVEYVLALIDEML ANPKR
Sbjct: 32  LQLLRRYDHRPESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKR 91

Query: 61  ARLFHDKSLASEDTYEPFL-----SNWFIQEKSCKILASIVRYLKHD------------- 102
           ARLFHD +LA EDTYEPFL      NWFIQEKSCKILA +V     +             
Sbjct: 92  ARLFHDSALADEDTYEPFLRLLWKGNWFIQEKSCKILALVVSVRPKNQNGVVSNGEASNG 151

Query: 103 --PFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160
             PF    + + +G+  ++    LKKPSHP RGVP AINCLA LLKEP+VRSSFVQADGV
Sbjct: 152 KKPFTT-IDDVLIGLVKWL-CEQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVQADGV 209

Query: 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVT 207
           KLL PLISPASTQQSIQL      L   C  +     Y PA   + T
Sbjct: 210 KLLVPLISPASTQQSIQL------LYETCLCIWLLSYYEPAIEYLAT 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454716|ref|XP_002271887.1| PREDICTED: V-type proton ATPase subunit H-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|14334994|gb|AAK59761.1| AT3g42050/F4M19_10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356559428|ref|XP_003548001.1| PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Glycine max] gi|356559430|ref|XP_003548002.1| PREDICTED: V-type proton ATPase subunit H-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449437702|ref|XP_004136630.1| PREDICTED: V-type proton ATPase subunit H-like [Cucumis sativus] gi|449505987|ref|XP_004162622.1| PREDICTED: V-type proton ATPase subunit H-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15228443|ref|NP_189791.1| V-type proton ATPase subunit H [Arabidopsis thaliana] gi|12585473|sp|Q9LX65.1|VATH_ARATH RecName: Full=V-type proton ATPase subunit H; Short=V-ATPase subunit H; AltName: Full=Vacuolar H(+)-ATPase subunit H; AltName: Full=Vacuolar proton pump subunit H gi|7801655|emb|CAB91576.1| vacuolar H(+)-ATPase subunit-like protein [Arabidopsis thaliana] gi|20147135|gb|AAM10284.1| AT3g42050/F4M19_10 [Arabidopsis thaliana] gi|332644197|gb|AEE77718.1| V-type proton ATPase subunit H [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222424600|dbj|BAH20255.1| AT3G42050 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224145903|ref|XP_002325805.1| predicted protein [Populus trichocarpa] gi|222862680|gb|EEF00187.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217073296|gb|ACJ85007.1| unknown [Medicago truncatula] gi|388491592|gb|AFK33862.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297737281|emb|CBI26482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2083881 441 AT3G42050 [Arabidopsis thalian 0.923 0.521 0.579 1.6e-61
UNIPROTKB|G3V126 443 ATP6V1H "ATPase, H+ transporti 0.309 0.173 0.294 1.2e-14
UNIPROTKB|Q9UI12 483 ATP6V1H "V-type proton ATPase 0.309 0.159 0.294 1.6e-14
MGI|MGI:1914864 483 Atp6v1h "ATPase, H+ transporti 0.309 0.159 0.294 2.8e-14
UNIPROTKB|O46563 483 ATP6V1H "V-type proton ATPase 0.397 0.204 0.264 8.9e-14
RGD|1562450 441 Atp6v1h "ATPase, H+ transporti 0.309 0.174 0.282 1.1e-13
UNIPROTKB|E9PTI1 441 Atp6v1h "Protein Atp6v1h" [Rat 0.309 0.174 0.282 1.1e-13
UNIPROTKB|F1MZL8 483 ATP6V1H "V-type proton ATPase 0.397 0.204 0.264 1.4e-13
UNIPROTKB|Q9TVC1 483 ATP6V1H "V-type proton ATPase 0.397 0.204 0.254 1.5e-13
UNIPROTKB|E2RHZ8 483 ATP6V1H "Uncharacterized prote 0.397 0.204 0.254 2.1e-13
TAIR|locus:2083881 AT3G42050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 142/245 (57%), Positives = 174/245 (71%)

Query:     1 LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKR 60
             LQLLRRYD + ES RAQLLD+DGP+YV +FVSILRDI+KEETVEYVLALI EML+ANP R
Sbjct:    32 LQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTR 91

Query:    61 ARLFHDKSLASEDTYEPFL-----SNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGI 115
             ARLFHD+SLA+EDTYEPFL      NWFIQEKSCKILA I+        A   N ++  +
Sbjct:    92 ARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNGIDDVL 151

Query:   116 FCYIQLLI--LKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQ 173
                ++ L   LK+PSHP+RGVP+AI+CL++LLKEP+VRSSFVQADGVKLL PLISPASTQ
Sbjct:   152 KGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQ 211

Query:   174 QSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE-VTKSALL 232
             QSIQL    L     C  L  +  Y PA   + T  +  +R+ +++ H   E V +  +L
Sbjct:   212 QSIQL----LYETCLCIWLLSY--YEPAIEYLATS-RTMQRLTEVVKHSTKEKVVRVVIL 264

Query:   233 CIQRL 237
               + L
Sbjct:   265 TFRNL 269
GO:0005634 "nucleus" evidence=ISM
GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA
GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0000325 "plant-type vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
UNIPROTKB|G3V126 ATP6V1H "ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H, isoform CRA_c" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UI12 ATP6V1H "V-type proton ATPase subunit H" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914864 Atp6v1h "ATPase, H+ transporting, lysosomal V1 subunit H" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O46563 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1562450 Atp6v1h "ATPase, H+ transporting, lysosomal V1 subunit H" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTI1 Atp6v1h "Protein Atp6v1h" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZL8 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TVC1 ATP6V1H "V-type proton ATPase subunit H" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHZ8 ATP6V1H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G42050
vacuolar ATP synthase subunit H family protein; vacuolar ATP synthase subunit H family protein; FUNCTIONS IN- binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN- ATP synthesis coupled proton transport; LOCATED IN- vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN- 27 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- ATPase, V1 complex, subunit H, C-terminal (InterPro-IPR011987), ATPase, V1 c [...] (441 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
VHA-A
VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, [...] (623 aa)
   •••• 0.997
AT3G58730
vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (V [...] (261 aa)
   •••• 0.993
DET3
DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism; Encodes subunit C of t [...] (375 aa)
   • •• 0.983
VATF
vacuolar ATPase subunit F family protein; vacuolar ATPase subunit F family protein; FUNCTIONS I [...] (128 aa)
   • •• 0.983
VHA-E2
VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2); hydrogen-exporting ATPase, phosphorylative mec [...] (235 aa)
   •••• 0.962
VHA-A3
VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 3. Loc [...] (821 aa)
   • •• 0.951
TUF
TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism; Encod [...] (230 aa)
   •••• 0.950
VHA-A1
VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 1. Lo [...] (817 aa)
     •• 0.947
VHA-A2
VHA-A2 (VACUOLAR PROTON ATPASE A2); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 2. Loc [...] (821 aa)
     •• 0.936
AVP1
AVP1; ATPase/ hydrogen-translocating pyrophosphatase; Encodes a H(+)-translocating (pyrophospha [...] (770 aa)
   • •• 0.930

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
cd00256 429 cd00256, VATPase_H, VATPase_H, regulatory vacuolar 1e-41
pfam03224312 pfam03224, V-ATPase_H_N, V-ATPase subunit H 9e-34
pfam11698119 pfam11698, V-ATPase_H_C, V-ATPase subunit H 4e-22
cd00256429 cd00256, VATPase_H, VATPase_H, regulatory vacuolar 5e-21
COG5231432 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subu 1e-05
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information 
 Score =  146 bits (371), Expect = 1e-41
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 15/183 (8%)

Query: 1   LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKR 60
            Q ++  + +    + ++LD     YV+ FV++L  I K++TV YVL LID+ML  +  R
Sbjct: 31  YQFIKALEKKRV--KEEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTR 88

Query: 61  ARLFHDKSLASEDTYEPFL-----SNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGI 115
            +LFHD +L  + T+EPF       + FI   S  ILA +  +          +      
Sbjct: 89  VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLD------ 142

Query: 116 FCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQS 175
           + +  L         +  V  A  CL  LL+    R +FV ADGV  L  L+S A+    
Sbjct: 143 YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT--LG 200

Query: 176 IQL 178
            QL
Sbjct: 201 FQL 203

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. Length = 429
>gnl|CDD|217434 pfam03224, V-ATPase_H_N, V-ATPase subunit H Back     alignment and domain information
>gnl|CDD|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H Back     alignment and domain information
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 100.0
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 100.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 99.97
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 99.96
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 99.86
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.66
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.79
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.23
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.19
PF05804708 KAP: Kinesin-associated protein (KAP) 96.04
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.94
PF05804 708 KAP: Kinesin-associated protein (KAP) 95.37
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 95.35
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.29
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.12
PF04826 254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.6
KOG4224 550 consensus Armadillo repeat protein VAC8 required f 93.39
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 93.23
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 92.71
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 92.19
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 92.12
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.95
KOG2160 342 consensus Armadillo/beta-catenin-like repeat-conta 90.59
PF07539141 DRIM: Down-regulated in metastasis; InterPro: IPR0 89.07
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 89.0
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 88.33
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 85.95
PF08167165 RIX1: rRNA processing/ribosome biogenesis 85.61
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 85.51
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 84.52
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 84.38
PF09450106 DUF2019: Domain of unknown function (DUF2019); Int 83.94
PF12717 178 Cnd1: non-SMC mitotic condensation complex subunit 82.05
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-60  Score=445.43  Aligned_cols=234  Identities=34%  Similarity=0.540  Sum_probs=214.3

Q ss_pred             CchhhhhcCC-CHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccC-CCCcccccc
Q 047448            1 LQLLRRYDNR-SESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSL-ASEDTYEPF   78 (249)
Q Consensus         1 l~~I~~~Dk~-~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~-~~~~py~pf   78 (249)
                      +++|++||+. .++.|.+++.+++++|+.+|+|||+++.+||+|+|+|+||+|||+++++|+++|++.+. .+..+|.||
T Consensus        40 ~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~f  119 (442)
T KOG2759|consen   40 YQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSF  119 (442)
T ss_pred             HHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHH
Confidence            4789999995 45699999999999999999999999999999999999999999999999999999887 577889999


Q ss_pred             cC-----hHHHHHHHHHHHHHHHhhhcCCCchhhhhh-hhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhH
Q 047448           79 LS-----NWFIQEKSCKILASIVRYLKHDPFAQRCNS-LEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRS  152 (249)
Q Consensus        79 L~-----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~-~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~  152 (249)
                      ++     |+|+.+++++|+|+++++|+..  +   +. ....|++|| .+++.+ +++++|+++|+||||+|||+|+||.
T Consensus       120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~--~---~~~e~~~~~~~l-~~~l~~-~~~~~~~~~~~rcLQ~ll~~~eyR~  192 (442)
T KOG2759|consen  120 LNLLNRQDTFIVEMSFRILSKLACFGNCK--M---ELSELDVYKGFL-KEQLQS-STNNDYIQFAARCLQTLLRVDEYRY  192 (442)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhcccc--c---cchHHHHHHHHH-HHHHhc-cCCCchHHHHHHHHHHHhcCcchhh
Confidence            99     9999999999999999998766  3   23 348899999 999876 4689999999999999999999999


Q ss_pred             HHhhcccccchHhhh-cccc-ccchhhhH---------HH----------------------------------------
Q 047448          153 SFVQADGVKLLTPLI-SPAS-TQQSIQLA---------GA----------------------------------------  181 (249)
Q Consensus       153 ~fw~~~gv~~L~~iL-~~~~-~~~~~Qll---------p~----------------------------------------  181 (249)
                      .||..+|+..|+.++ ++.+ +|+|||++         |.                                        
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999 5544 58888876         11                                        


Q ss_pred             -------------H------------------------------------------------------------------
Q 047448          182 -------------M------------------------------------------------------------------  182 (249)
Q Consensus       182 -------------M------------------------------------------------------------------  182 (249)
                                   |                                                                  
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence                         1                                                                  


Q ss_pred             -----------------------------HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHH
Q 047448          183 -----------------------------LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC  233 (249)
Q Consensus       183 -----------------------------~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~  233 (249)
                                                   .++|||||||||||||||+||.+++++|||++||+||+|+||+||||||+|
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla  432 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA  432 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence                                         899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchh
Q 047448          234 IQRLFLGA  241 (249)
Q Consensus       234 ~q~~~~~~  241 (249)
                      +|++|+++
T Consensus       433 vQ~lm~~~  440 (442)
T KOG2759|consen  433 VQKLMVHN  440 (442)
T ss_pred             HHHHHhhc
Confidence            99999986

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 2e-19
1ho8_A 480 Vacuolar ATP synthase subunit H; heat repeat, hydr 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-05
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-04
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480 Back     alignment and structure
 Score = 85.6 bits (211), Expect = 2e-19
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM 219
            + L  L+        +      + + VA  D++  ++  P    ++     K  +M+L+
Sbjct: 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 456

Query: 220 NHENTEVTKSALLCIQRL 237
           NH ++ V   AL   Q +
Sbjct: 457 NHSDSRVKYEALKATQAI 474
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 100.0
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.78
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.77
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.7
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.64
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.61
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.51
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.43
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.37
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.31
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.29
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 98.21
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.2
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 98.19
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.13
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.11
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 98.06
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.87
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 97.85
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 97.79
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.77
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.74
3nmz_A458 APC variant protein; protein-protein complex, arma 97.74
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.72
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.65
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.63
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.6
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.22
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.17
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.02
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 96.94
3nmz_A458 APC variant protein; protein-protein complex, arma 96.89
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.69
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.58
3opb_A 778 SWI5-dependent HO expression protein 4; heat and a 94.85
3grl_A 651 General vesicular transport factor P115; vesicle t 94.78
3grl_A 651 General vesicular transport factor P115; vesicle t 94.31
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 94.13
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 93.74
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 92.94
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 92.93
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 92.89
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 91.75
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 91.73
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 91.54
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 91.4
3opb_A 778 SWI5-dependent HO expression protein 4; heat and a 91.13
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 91.06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 90.72
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 90.53
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 90.22
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 89.68
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 88.68
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 87.61
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 86.2
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 81.76
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 81.09
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
Probab=100.00  E-value=6.6e-54  Score=410.91  Aligned_cols=231  Identities=17%  Similarity=0.209  Sum_probs=192.7

Q ss_pred             CchhhhhcCCC-HHHHhhh----------hhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCh---HHHHHHHh
Q 047448            1 LQLLRRYDNRS-ESHRAQL----------LDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANP---KRARLFHD   66 (249)
Q Consensus         1 l~~I~~~Dk~~-~e~r~~~----------l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p---~rv~~F~~   66 (249)
                      +++||+||+++ ++.+.+.          +..+ +.|+++|+++|++++|+||+||||+||+|||+++|   +++++|++
T Consensus        43 ~~~ik~~dk~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~  121 (480)
T 1ho8_A           43 ASTAKALESILVKKNIGDGLSSSNNAHSGFKVN-GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQE  121 (480)
T ss_dssp             HHHHHHHHHHHHCC-----------------CS-STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHhhhhccchhhhhhhhcC-chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhh
Confidence            36899999965 4545544          5666 68999999999999999999999999999999999   99999999


Q ss_pred             ccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHH--HHHHHHhcCC-CCCCCChHHHHHHH
Q 047448           67 KSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFC--YIQLLILKKP-SHPSRGVPVAINCL  141 (249)
Q Consensus        67 ~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~--wL~~~~l~~~-~~~~~~i~~~v~~L  141 (249)
                      .++....||.||+.  |+|+++.|+.+++.+++++   +..   ++..+++++  |+ .++++++ +++.+|+  |++||
T Consensus       122 ~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~---~~~---~~~l~~l~~~~~~-~~~L~~~~~~~~~~i--~v~~L  192 (480)
T 1ho8_A          122 DPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG---LHN---VKLVEKLLKNNNL-INILQNIEQMDTCYV--CIRLL  192 (480)
T ss_dssp             CTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT---TCC---HHHHHHHHHCHHH-HHHHHCTTCHHHHHH--HHHHH
T ss_pred             CcccchHHHHHHhcccchHHHHHHHHHHHHHhccC---Ccc---HhHHHHHhhhHHH-HHHhccccCCchHHH--HHHHH
Confidence            87755579999998  8999999999999998874   322   466799999  99 9999874 3466776  99999


Q ss_pred             HHHhccchhhHHHhhccc--ccchHhhhccc-------------cccchhhhH-------------HH------------
Q 047448          142 AALLKEPMVRSSFVQADG--VKLLTPLISPA-------------STQQSIQLA-------------GA------------  181 (249)
Q Consensus       142 q~LLr~~~yR~~fw~~~g--v~~L~~iL~~~-------------~~~~~~Qll-------------p~------------  181 (249)
                      |+|||+++||..||+.+|  +++++.+++++             ++++|+||+             |.            
T Consensus       193 ~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~  272 (480)
T 1ho8_A          193 QELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSD  272 (480)
T ss_dssp             HHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHH
T ss_pred             HHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHH
Confidence            999999999999999877  88888887654             344455554             00            


Q ss_pred             -----------------------------------------H--------------------------------------
Q 047448          182 -----------------------------------------M--------------------------------------  182 (249)
Q Consensus       182 -----------------------------------------M--------------------------------------  182 (249)
                                                               |                                      
T Consensus       273 ~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~  352 (480)
T 1ho8_A          273 FLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEY  352 (480)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence                                                     0                                      


Q ss_pred             -------------------------------------------------------------------HHHHHHhchhhhh
Q 047448          183 -------------------------------------------------------------------LALAVACFDLSQF  195 (249)
Q Consensus       183 -------------------------------------------------------------------~~lava~~dig~~  195 (249)
                                                                                         .++||||||||||
T Consensus       353 ~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef  432 (480)
T 1ho8_A          353 QELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV  432 (480)
T ss_dssp             HTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence                                                                               2599999999999


Q ss_pred             hHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448          196 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA  241 (249)
Q Consensus       196 v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~  241 (249)
                      |||||+||.+++++|||++||+||+|+|++||||||+|+||+|++|
T Consensus       433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999987
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 249
d1ho8a_ 477 a.118.1.9 (A:) Regulatory subunit H of the V-type 3e-25
d1ho8a_477 a.118.1.9 (A:) Regulatory subunit H of the V-type 7e-21
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-04
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 477 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 3e-25
 Identities = 27/208 (12%), Positives = 59/208 (28%), Gaps = 36/208 (17%)

Query: 1   LQLLRRYDN-RSESHRAQLLDDD---------GPSYVRVFVSILRDIYKEETVEYVLALI 50
               +  ++   + +    L                +   + +L     E+  + V  LI
Sbjct: 40  ASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLI 99

Query: 51  DEMLTANPKRARLFHDKSLASEDTYEPFLS-----NWFIQEKSCKILASIVRYLKHDPFA 105
            E+L+++              +   + F          +      +++ +V+   H+   
Sbjct: 100 AELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNV-- 157

Query: 106 QRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFV---------- 155
                +E  +     + IL+          V I  L  L   P  R              
Sbjct: 158 ---KLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTL 213

Query: 156 -----QADGVKLLTPLISPASTQQSIQL 178
                +A   +L T +++  S    IQL
Sbjct: 214 FKILQRATDSQLATRIVATNSNHLGIQL 241
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 477 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 100.0
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.3
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.26
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.1
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.94
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.88
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.8
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.8
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.58
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.8
d1b3ua_588 Constant regulatory domain of protein phosphatase 95.84
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.62
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 91.81
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 90.73
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 90.08
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 88.2
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 88.15
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 87.77
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 87.51
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 86.63
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 83.48
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 82.33
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 80.21
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 80.2
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-56  Score=427.28  Aligned_cols=235  Identities=16%  Similarity=0.137  Sum_probs=190.7

Q ss_pred             CchhhhhcCC-CHHHHhhhhhhc---------chhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCC
Q 047448            1 LQLLRRYDNR-SESHRAQLLDDD---------GPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLA   70 (249)
Q Consensus         1 l~~I~~~Dk~-~~e~r~~~l~~~---------~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~   70 (249)
                      +++||+|||+ .+++|.++++.+         |++|+++|+|+|++++|+||+||||+||||||+++|.+..+|.-..++
T Consensus        40 l~~Ik~~dk~~~~~~r~~~l~~~~~~~~~~~~g~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~  119 (477)
T d1ho8a_          40 ASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED  119 (477)
T ss_dssp             HHHHHHHHHHHHCC-----------------CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHC
T ss_pred             HHHHHHHhccchHHHHHHHhhccchhhhhhccccHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhC
Confidence            4789999995 467788888866         789999999999999999999999999999999999776666555557


Q ss_pred             CCcccccccC-----hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047448           71 SEDTYEPFLS-----NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALL  145 (249)
Q Consensus        71 ~~~py~pfL~-----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LL  145 (249)
                      +..||.||++     |+|+.++|++++++|++++......   .+.+.++++|+ +.+..+++.+.++|  ||||||+||
T Consensus       120 ~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~---~e~l~~~~~~l-~~l~~~~~~~~~~i--~v~~lq~ll  193 (477)
T d1ho8a_         120 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKL---VEKLLKNNNLI-NILQNIEQMDTCYV--CIRLLQELA  193 (477)
T ss_dssp             TTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHH---HHHHHHCHHHH-HHHHCTTCHHHHHH--HHHHHHHHH
T ss_pred             ccchhHHHHHhccCchhHHHHHHHHHHHHHHhccccccch---HHHHHHhhHHH-HHhhcccccchHHH--HHHHHHHHh
Confidence            7788888877     9999999999999999996544222   35567788888 77766665555655  999999999


Q ss_pred             ccchhhHHHhhccc--ccchHhhhccc-------------cccchhhhH-------------HH----------------
Q 047448          146 KEPMVRSSFVQADG--VKLLTPLISPA-------------STQQSIQLA-------------GA----------------  181 (249)
Q Consensus       146 r~~~yR~~fw~~~g--v~~L~~iL~~~-------------~~~~~~Qll-------------p~----------------  181 (249)
                      |.++||..||+.++  +++|+++|+.+             +++.|+|++             |.                
T Consensus       194 r~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l  273 (477)
T d1ho8a_         194 VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDL  273 (477)
T ss_dssp             TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHH
T ss_pred             cCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHH
Confidence            99999999999755  89999999654             134555655             00                


Q ss_pred             --------------------------------------H-----------------------------------------
Q 047448          182 --------------------------------------M-----------------------------------------  182 (249)
Q Consensus       182 --------------------------------------M-----------------------------------------  182 (249)
                                                            |                                         
T Consensus       274 ~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lT  353 (477)
T d1ho8a_         274 LKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELT  353 (477)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                  0                                         


Q ss_pred             ---------------------------------------------------------------HHHHHHhchhhhhhHhc
Q 047448          183 ---------------------------------------------------------------LALAVACFDLSQFIQYH  199 (249)
Q Consensus       183 ---------------------------------------------------------------~~lava~~dig~~v~~~  199 (249)
                                                                                     +++||||||||||||||
T Consensus       354 sfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~  433 (477)
T d1ho8a_         354 SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL  433 (477)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC
Confidence                                                                           36999999999999999


Q ss_pred             cchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448          200 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA  241 (249)
Q Consensus       200 p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~  241 (249)
                      |+||.++++||||++||+||+|+||+||||||+|+||||+||
T Consensus       434 P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         434 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999997
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure